0.019644
0.000000
0.000000
0.000000
0.017159
0.000000
0.000000
0.000000
0.016188
0.00000
0.00000
0.00000
Ragland, D.A.
Nalam, M.N.L.
Cao, H.
Nalivaika, E.A.
Cai, Y.
Kurt-Yilmaz, N.
Schiffer, C.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
50.906
58.277
61.775
C27 H37 N3 O7 S
547.664
(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE
Darunavir; TMC114; UIC-94017
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
N
8
N
S
N
9
N
O
N
10
N
O
N
11
N
N
N
12
N
C
N
13
N
C
N
14
N
C
N
15
N
C
N
16
N
C
N
17
R
C
N
18
N
O
N
19
S
C
N
20
N
N
N
21
N
C
N
22
N
O
N
23
N
O
N
24
R
C
N
25
N
C
N
26
N
O
N
27
R
C
N
28
N
O
N
29
N
C
N
30
N
C
N
31
S
C
N
32
N
C
Y
33
N
C
Y
34
N
C
Y
35
N
C
Y
36
N
C
Y
37
N
C
Y
38
N
C
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
N
N
77
S
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
N
N
97
N
C
N
98
N
N
N
99
N
N
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
S
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
O
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
R
C
N
151
N
C
N
152
N
O
N
153
N
C
N
154
N
S
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
N
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
O
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
O
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
Y
231
N
C
Y
232
N
N
Y
233
N
C
Y
234
N
C
Y
235
N
N
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
S
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
N
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
C
N
325
N
S
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
P
N
363
N
O
N
364
N
O
N
365
N
O
N
366
N
O
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
N
372
N
C
N
373
N
C
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
R
C
N
389
N
O
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
N
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
N
439
N
O
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
N
N
453
S
C
N
454
N
C
N
455
N
O
N
456
N
C
N
457
N
C
N
458
N
C
N
459
N
O
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
Y
4
N
doub
Y
5
N
sing
Y
6
N
sing
N
7
N
sing
Y
8
N
doub
N
9
N
sing
Y
10
N
sing
N
11
N
sing
Y
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
doub
N
16
N
doub
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
doub
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
Y
68
N
doub
Y
69
N
sing
N
70
N
sing
Y
71
N
sing
N
72
N
sing
Y
73
N
doub
N
74
N
sing
Y
75
N
sing
N
76
N
sing
Y
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
Y
231
N
sing
Y
232
N
doub
Y
233
N
doub
N
234
N
sing
Y
235
N
sing
N
236
N
sing
Y
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
Y
339
N
doub
Y
340
N
sing
Y
341
N
sing
N
342
N
sing
Y
343
N
doub
N
344
N
sing
Y
345
N
doub
N
346
N
sing
Y
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
Y
427
N
doub
Y
428
N
sing
Y
429
N
sing
N
430
N
sing
Y
431
N
doub
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
136
11956
11963
10.1021/ja504096m
25091085
Drug resistance conferred by mutations outside the active site through alterations in the dynamic and structural ensemble of HIV-1 protease.
2014
10.2210/pdb4q1x/pdb
pdb_00004q1x
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
OSMIC Mirrors
IMAGE PLATE
2008-09-22
RIGAKU RAXIS IV
OSMIC Mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
10829.816
ASPARTYL PROTEASE
3.4.23.16
unp residues 1-99
Q7K, V32I
2
man
polymer
547.664
(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
18.015
water
93
nat
water
no
no
PQITLWKRPLVTIRIGGQLKEALLDTGADDTILEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
PQITLWKRPLVTIRIGGQLKEALLDTGADDTILEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HIV-1 M:B_HXB2R
sample
gag-pol, pol
11676
Human immunodeficiency virus 1
562
Escherichia coli
Tap56
Plasmid
pXC35
1
2.12
41.85
VAPOR DIFFUSION, HANGING DROP
6.2
126mM Phosphate buffer, 63mM Sodium Citrate, 24-29% Ammonium Sulfate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
chem_comp
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Structure summary
1
0
2015-02-18
1
1
2024-02-28
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2014-04-04
REL
REL
017
(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE
GOL
GLYCEROL
PO4
PHOSPHATE ION
HOH
water
017
200
2
017
017
101
A
GOL
2
3
GOL
GOL
102
A
PO4
1
4
PO4
PO4
101
B
HOH
1
5
HOH
HOH
201
A
HOH
2
5
HOH
HOH
202
A
HOH
4
5
HOH
HOH
203
A
HOH
5
5
HOH
HOH
204
A
HOH
6
5
HOH
HOH
205
A
HOH
8
5
HOH
HOH
206
A
HOH
12
5
HOH
HOH
207
A
HOH
14
5
HOH
HOH
208
A
HOH
16
5
HOH
HOH
209
A
HOH
18
5
HOH
HOH
210
A
HOH
19
5
HOH
HOH
211
A
HOH
20
5
HOH
HOH
212
A
HOH
23
5
HOH
HOH
213
A
HOH
24
5
HOH
HOH
214
A
HOH
25
5
HOH
HOH
215
A
HOH
26
5
HOH
HOH
216
A
HOH
29
5
HOH
HOH
217
A
HOH
30
5
HOH
HOH
218
A
HOH
31
5
HOH
HOH
219
A
HOH
33
5
HOH
HOH
220
A
HOH
38
5
HOH
HOH
221
A
HOH
40
5
HOH
HOH
222
A
HOH
41
5
HOH
HOH
223
A
HOH
50
5
HOH
HOH
224
A
HOH
58
5
HOH
HOH
225
A
HOH
59
5
HOH
HOH
226
A
HOH
60
5
HOH
HOH
227
A
HOH
61
5
HOH
HOH
228
A
HOH
63
5
HOH
HOH
229
A
HOH
66
5
HOH
HOH
230
A
HOH
69
5
HOH
HOH
231
A
HOH
70
5
HOH
HOH
232
A
HOH
77
5
HOH
HOH
233
A
HOH
78
5
HOH
HOH
234
A
HOH
81
5
HOH
HOH
235
A
HOH
84
5
HOH
HOH
236
A
HOH
85
5
HOH
HOH
237
A
HOH
86
5
HOH
HOH
238
A
HOH
87
5
HOH
HOH
239
A
HOH
88
5
HOH
HOH
240
A
HOH
89
5
HOH
HOH
241
A
HOH
90
5
HOH
HOH
242
A
HOH
91
5
HOH
HOH
243
A
HOH
92
5
HOH
HOH
244
A
HOH
93
5
HOH
HOH
245
A
HOH
64
5
HOH
HOH
246
A
HOH
65
5
HOH
HOH
247
A
HOH
73
5
HOH
HOH
248
A
HOH
76
5
HOH
HOH
249
A
HOH
3
5
HOH
HOH
201
B
HOH
7
5
HOH
HOH
202
B
HOH
9
5
HOH
HOH
203
B
HOH
10
5
HOH
HOH
204
B
HOH
11
5
HOH
HOH
205
B
HOH
13
5
HOH
HOH
206
B
HOH
15
5
HOH
HOH
207
B
HOH
17
5
HOH
HOH
208
B
HOH
21
5
HOH
HOH
209
B
HOH
22
5
HOH
HOH
210
B
HOH
27
5
HOH
HOH
211
B
HOH
28
5
HOH
HOH
212
B
HOH
32
5
HOH
HOH
213
B
HOH
34
5
HOH
HOH
214
B
HOH
35
5
HOH
HOH
215
B
HOH
36
5
HOH
HOH
216
B
HOH
37
5
HOH
HOH
217
B
HOH
39
5
HOH
HOH
218
B
HOH
42
5
HOH
HOH
219
B
HOH
43
5
HOH
HOH
220
B
HOH
44
5
HOH
HOH
221
B
HOH
45
5
HOH
HOH
222
B
HOH
46
5
HOH
HOH
223
B
HOH
47
5
HOH
HOH
224
B
HOH
48
5
HOH
HOH
225
B
HOH
49
5
HOH
HOH
226
B
HOH
51
5
HOH
HOH
227
B
HOH
52
5
HOH
HOH
228
B
HOH
53
5
HOH
HOH
229
B
HOH
54
5
HOH
HOH
230
B
HOH
55
5
HOH
HOH
231
B
HOH
56
5
HOH
HOH
232
B
HOH
57
5
HOH
HOH
233
B
HOH
62
5
HOH
HOH
234
B
HOH
67
5
HOH
HOH
235
B
HOH
68
5
HOH
HOH
236
B
HOH
71
5
HOH
HOH
237
B
HOH
72
5
HOH
HOH
238
B
HOH
74
5
HOH
HOH
239
B
HOH
75
5
HOH
HOH
240
B
HOH
79
5
HOH
HOH
241
B
HOH
80
5
HOH
HOH
242
B
HOH
82
5
HOH
HOH
243
B
HOH
83
5
HOH
HOH
244
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
LYS
7
n
7
LYS
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
ARG
14
n
14
ARG
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
ILE
32
n
32
ILE
32
A
LEU
33
n
33
LEU
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
ASN
37
n
37
ASN
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
LYS
41
n
41
LYS
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
PRO
63
n
63
PRO
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
CYS
95
n
95
CYS
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
1
n
1
PRO
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
THR
4
n
4
THR
4
B
LEU
5
n
5
LEU
5
B
TRP
6
n
6
TRP
6
B
LYS
7
n
7
LYS
7
B
ARG
8
n
8
ARG
8
B
PRO
9
n
9
PRO
9
B
LEU
10
n
10
LEU
10
B
VAL
11
n
11
VAL
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
ARG
14
n
14
ARG
14
B
ILE
15
n
15
ILE
15
B
GLY
16
n
16
GLY
16
B
GLY
17
n
17
GLY
17
B
GLN
18
n
18
GLN
18
B
LEU
19
n
19
LEU
19
B
LYS
20
n
20
LYS
20
B
GLU
21
n
21
GLU
21
B
ALA
22
n
22
ALA
22
B
LEU
23
n
23
LEU
23
B
LEU
24
n
24
LEU
24
B
ASP
25
n
25
ASP
25
B
THR
26
n
26
THR
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
ASP
29
n
29
ASP
29
B
ASP
30
n
30
ASP
30
B
THR
31
n
31
THR
31
B
ILE
32
n
32
ILE
32
B
LEU
33
n
33
LEU
33
B
GLU
34
n
34
GLU
34
B
GLU
35
n
35
GLU
35
B
MET
36
n
36
MET
36
B
ASN
37
n
37
ASN
37
B
LEU
38
n
38
LEU
38
B
PRO
39
n
39
PRO
39
B
GLY
40
n
40
GLY
40
B
LYS
41
n
41
LYS
41
B
TRP
42
n
42
TRP
42
B
LYS
43
n
43
LYS
43
B
PRO
44
n
44
PRO
44
B
LYS
45
n
45
LYS
45
B
MET
46
n
46
MET
46
B
ILE
47
n
47
ILE
47
B
GLY
48
n
48
GLY
48
B
GLY
49
n
49
GLY
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
GLY
52
n
52
GLY
52
B
PHE
53
n
53
PHE
53
B
ILE
54
n
54
ILE
54
B
LYS
55
n
55
LYS
55
B
VAL
56
n
56
VAL
56
B
ARG
57
n
57
ARG
57
B
GLN
58
n
58
GLN
58
B
TYR
59
n
59
TYR
59
B
ASP
60
n
60
ASP
60
B
GLN
61
n
61
GLN
61
B
ILE
62
n
62
ILE
62
B
PRO
63
n
63
PRO
63
B
ILE
64
n
64
ILE
64
B
GLU
65
n
65
GLU
65
B
ILE
66
n
66
ILE
66
B
CYS
67
n
67
CYS
67
B
GLY
68
n
68
GLY
68
B
HIS
69
n
69
HIS
69
B
LYS
70
n
70
LYS
70
B
ALA
71
n
71
ALA
71
B
ILE
72
n
72
ILE
72
B
GLY
73
n
73
GLY
73
B
THR
74
n
74
THR
74
B
VAL
75
n
75
VAL
75
B
LEU
76
n
76
LEU
76
B
VAL
77
n
77
VAL
77
B
GLY
78
n
78
GLY
78
B
PRO
79
n
79
PRO
79
B
THR
80
n
80
THR
80
B
PRO
81
n
81
PRO
81
B
VAL
82
n
82
VAL
82
B
ASN
83
n
83
ASN
83
B
ILE
84
n
84
ILE
84
B
ILE
85
n
85
ILE
85
B
GLY
86
n
86
GLY
86
B
ARG
87
n
87
ARG
87
B
ASN
88
n
88
ASN
88
B
LEU
89
n
89
LEU
89
B
LEU
90
n
90
LEU
90
B
THR
91
n
91
THR
91
B
GLN
92
n
92
GLN
92
B
ILE
93
n
93
ILE
93
B
GLY
94
n
94
GLY
94
B
CYS
95
n
95
CYS
95
B
THR
96
n
96
THR
96
B
LEU
97
n
97
LEU
97
B
ASN
98
n
98
ASN
98
B
PHE
99
n
99
PHE
99
B
5.3577
-1.7535
-0.5433
6.7925
1.7934
3.8655
-0.3250
-0.5213
0.0274
0.5578
0.2786
0.0948
0.0308
0.1400
0.0464
-0.0205
0.0476
0.0081
0.0046
0.0095
-0.1508
refined
20.6708
25.5966
29.2930
X-RAY DIFFRACTION
5.5800
-3.8897
0.6170
4.0372
1.3365
4.8030
-0.1273
-0.1495
-0.5015
0.1980
0.1766
0.3658
0.1627
0.0571
-0.0494
-0.0306
-0.0084
0.0483
-0.1126
0.0396
-0.0304
refined
19.7454
17.7228
23.3022
X-RAY DIFFRACTION
1.3203
0.3407
0.1954
2.7006
-0.1803
1.2932
-0.0101
0.1100
-0.1105
0.0152
0.0615
-0.0428
-0.0393
0.0334
-0.0514
-0.0153
0.0068
0.0044
-0.0109
-0.0048
-0.0730
refined
27.7034
28.5426
18.7744
X-RAY DIFFRACTION
7.0840
-0.7130
0.7942
4.1174
0.2351
1.8910
0.0210
-0.0378
-0.1559
-0.1888
0.0019
0.1530
-0.1866
-0.0269
-0.0229
-0.0366
0.0203
0.0163
-0.0833
0.0092
-0.0509
refined
12.3460
26.9290
18.3074
X-RAY DIFFRACTION
13.6109
-1.3070
-2.8432
6.9728
4.1726
6.6825
-0.0829
-0.5396
0.0748
0.2905
0.2428
-0.7591
0.2223
0.4740
-0.1599
-0.0145
-0.0172
-0.0806
-0.0904
0.0350
0.0353
refined
39.6262
30.5753
24.1687
X-RAY DIFFRACTION
37.6518
-19.2838
0.5477
17.6838
3.4306
5.0684
-0.1758
0.4548
-1.3705
0.0567
-0.3123
1.0305
0.0538
-0.6097
0.4881
-0.0929
-0.0386
0.0125
-0.0298
-0.0183
0.0363
refined
0.9174
21.4415
17.8713
X-RAY DIFFRACTION
9.0426
0.4289
1.2815
8.5736
3.7171
7.0339
0.2147
0.0595
0.0279
-0.0171
0.0964
-0.6187
-0.2752
0.2865
-0.3112
-0.0789
-0.0030
0.0032
-0.0751
0.0657
-0.0370
refined
39.7724
31.7421
10.4198
X-RAY DIFFRACTION
10.8581
-5.5873
-2.9283
17.1051
8.0571
8.7777
0.1600
0.6253
0.0911
-0.1644
-0.1747
0.6676
0.1428
-0.6652
0.0147
-0.0986
-0.0168
0.0310
-0.0187
0.1213
-0.0607
refined
0.5065
34.3999
13.2067
X-RAY DIFFRACTION
12.6442
-2.5424
-1.4125
1.1686
0.4797
3.1502
-0.0795
0.5791
-0.1066
-0.1081
-0.0632
0.0038
0.0415
-0.0311
0.1427
-0.0340
0.0212
0.0011
-0.0540
-0.0034
-0.0707
refined
27.6847
31.2381
4.2623
X-RAY DIFFRACTION
13.9579
-1.9341
-3.3117
1.9654
-1.0622
2.1489
0.2871
0.0744
0.1712
0.0224
0.0470
0.2976
0.0113
0.1337
-0.3341
0.0001
0.0196
0.0020
-0.0259
0.0162
-0.0140
refined
12.5951
39.7688
11.5560
X-RAY DIFFRACTION
0.9203
0.7099
-0.7203
4.7366
-0.4862
3.9715
-0.0051
0.1892
0.2229
0.1143
0.0035
0.4076
-0.0981
0.1136
0.0016
-0.0272
-0.0302
-0.0221
-0.0013
0.0280
-0.0452
refined
29.0792
33.6112
14.5582
X-RAY DIFFRACTION
5.2371
-4.2828
4.9004
7.6981
-5.0716
4.8553
0.1850
0.4734
-0.1202
-0.3058
-0.1771
0.0052
0.2708
0.3793
-0.0078
-0.0205
0.0270
-0.0097
0.0308
0.0055
-0.0539
refined
10.4795
29.4175
11.9354
X-RAY DIFFRACTION
3.8077
-3.3370
3.0490
3.1960
-2.4368
2.6454
-0.0054
0.1258
-0.1605
-0.0518
0.0216
0.0006
-0.0574
-0.0638
-0.0162
-0.0093
-0.0022
0.0097
-0.0312
-0.0017
-0.0024
refined
28.6834
19.5235
19.2074
X-RAY DIFFRACTION
3.8888
-2.1557
-2.0132
1.1976
1.0848
1.4163
-0.1260
-0.4421
0.0243
-0.0006
0.1140
0.2674
-0.1597
-0.0239
0.0120
0.0229
0.0530
0.0292
0.0118
-0.0015
-0.0303
refined
11.6567
28.8127
26.9851
X-RAY DIFFRACTION
2.6144
-6.2057
2.7486
15.1738
-9.0866
17.7001
0.1365
0.3377
-0.5269
-0.6014
-0.6396
-0.4581
0.5280
0.4945
0.5031
-0.1337
0.0114
0.0552
0.0074
0.0231
-0.0127
refined
38.9785
23.5177
10.3992
X-RAY DIFFRACTION
10.8142
11.0784
-9.5026
18.6181
-11.6169
14.5965
0.6880
-0.0943
1.1070
0.9577
-0.0691
0.6816
-0.7927
-0.1290
-0.6189
-0.0787
0.0723
0.0165
-0.0644
0.0209
0.0774
refined
1.5919
36.5817
21.0572
X-RAY DIFFRACTION
32.0209
8.1457
-17.8937
10.8453
-6.2042
37.8929
0.1113
-0.4445
0.5162
0.6099
0.0528
-0.3169
0.0215
0.9238
-0.1640
-0.0725
-0.0126
-0.0702
-0.1323
-0.0167
-0.0309
refined
37.5138
24.2209
24.3568
X-RAY DIFFRACTION
20.2442
-9.8430
7.1437
24.8911
-0.1173
16.1734
0.0530
0.4935
-0.6838
-0.0409
-0.2173
-0.3792
0.8249
0.1798
0.1642
-0.0640
-0.0066
0.0519
-0.0963
0.0233
-0.0025
refined
2.6380
22.9000
23.9933
X-RAY DIFFRACTION
3.3905
-0.9510
1.2989
2.2057
0.1197
8.1482
-0.0116
0.0329
-0.1654
0.0281
-0.1614
-0.2148
0.0100
0.3014
0.1730
-0.0788
-0.0166
-0.0007
-0.0671
0.0117
0.0026
refined
35.7373
21.9719
18.2940
X-RAY DIFFRACTION
6.3520
1.9749
-7.5640
8.7812
-7.8060
13.9271
-0.0079
-0.2741
-0.0845
-0.1294
0.1413
0.2628
0.0876
0.0363
-0.1334
-0.1407
0.0068
-0.0356
-0.0523
0.0157
-0.0371
refined
3.9512
28.4919
25.2704
X-RAY DIFFRACTION
1.4919
-2.0118
-2.9689
11.7491
5.0979
6.0405
0.0538
0.0288
-0.0134
-0.1806
-0.0336
0.0446
-0.2634
-0.0556
-0.0202
-0.0090
0.0263
0.0005
0.0183
0.0132
-0.0286
refined
19.4822
29.7891
13.6932
X-RAY DIFFRACTION
A
1
A
5
X-RAY DIFFRACTION
1
A
94
A
99
X-RAY DIFFRACTION
1
A
6
A
10
X-RAY DIFFRACTION
1
B
1
B
5
X-RAY DIFFRACTION
2
B
94
B
99
X-RAY DIFFRACTION
2
B
6
B
10
X-RAY DIFFRACTION
2
A
20
A
32
X-RAY DIFFRACTION
3
B
20
B
32
X-RAY DIFFRACTION
4
A
11
A
19
X-RAY DIFFRACTION
5
B
11
B
19
X-RAY DIFFRACTION
6
A
33
A
43
X-RAY DIFFRACTION
7
B
33
B
43
X-RAY DIFFRACTION
8
A
44
A
57
X-RAY DIFFRACTION
9
B
44
B
57
X-RAY DIFFRACTION
10
A
77
A
85
X-RAY DIFFRACTION
11
B
77
B
85
X-RAY DIFFRACTION
12
A
86
A
93
X-RAY DIFFRACTION
13
B
86
B
93
X-RAY DIFFRACTION
14
A
58
A
62
X-RAY DIFFRACTION
15
B
58
B
62
X-RAY DIFFRACTION
16
A
63
A
68
X-RAY DIFFRACTION
17
B
63
B
68
X-RAY DIFFRACTION
18
A
69
A
76
X-RAY DIFFRACTION
19
B
69
B
76
X-RAY DIFFRACTION
20
A
101
A
101
X-RAY DIFFRACTION
21
author_and_software_defined_assembly
PISA
2
dimeric
4360
-29
9060
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
97
B
O
LEU
97
B
O
THR
96
B
O
THR
96
A
N
ASN
98
A
N
ASN
98
A
N
LEU
97
A
N
LEU
97
B
O
ILE
3
B
O
ILE
3
A
N
LYS
45
A
N
LYS
45
A
O
VAL
56
A
O
VAL
56
A
N
ILE
66
A
N
ILE
66
A
O
HIS
69
A
O
HIS
69
A
O
LEU
76
A
O
LEU
76
A
N
LEU
33
A
N
LEU
33
A
N
ILE
32
A
N
ILE
32
A
O
ILE
84
A
O
ILE
84
A
O
ILE
85
A
O
ILE
85
A
N
LEU
23
A
N
LEU
23
A
O
LYS
20
A
O
LYS
20
A
N
ILE
13
A
N
ILE
13
A
N
ARG
14
A
N
ARG
14
A
O
GLU
65
A
O
GLU
65
B
N
LYS
45
B
N
LYS
45
B
O
VAL
56
B
O
VAL
56
B
N
ILE
66
B
N
ILE
66
B
O
HIS
69
B
O
HIS
69
B
O
LEU
76
B
O
LEU
76
B
N
LEU
33
B
N
LEU
33
B
N
ILE
32
B
N
ILE
32
B
O
ILE
84
B
O
ILE
84
B
O
ILE
85
B
O
ILE
85
B
N
LEU
23
B
N
LEU
23
B
O
LYS
20
B
O
LYS
20
B
N
ILE
13
B
N
ILE
13
B
N
ARG
14
B
N
ARG
14
B
O
GLU
65
B
O
GLU
65
1
A
CG
LYS
7
A
CG
LYS
7
1
Y
1
A
CD
LYS
7
A
CD
LYS
7
1
Y
1
A
CE
LYS
7
A
CE
LYS
7
1
Y
1
A
NZ
LYS
7
A
NZ
LYS
7
1
Y
1
A
CG
LYS
41
A
CG
LYS
41
1
Y
1
A
CD
LYS
41
A
CD
LYS
41
1
Y
1
A
CE
LYS
41
A
CE
LYS
41
1
Y
1
A
NZ
LYS
41
A
NZ
LYS
41
1
Y
1
A
CG
LYS
43
A
CG
LYS
43
1
Y
1
A
CD
LYS
43
A
CD
LYS
43
1
Y
1
A
CE
LYS
43
A
CE
LYS
43
1
Y
1
A
NZ
LYS
43
A
NZ
LYS
43
1
Y
1
A
CG
LYS
45
A
CG
LYS
45
1
Y
1
A
CD
LYS
45
A
CD
LYS
45
1
Y
1
A
CE
LYS
45
A
CE
LYS
45
1
Y
1
A
NZ
LYS
45
A
NZ
LYS
45
1
Y
1
A
CG
LYS
70
A
CG
LYS
70
1
Y
1
A
CD
LYS
70
A
CD
LYS
70
1
Y
1
A
CE
LYS
70
A
CE
LYS
70
1
Y
1
A
NZ
LYS
70
A
NZ
LYS
70
1
Y
1
B
CG
LYS
7
B
CG
LYS
7
1
Y
1
B
CD
LYS
7
B
CD
LYS
7
1
Y
1
B
CE
LYS
7
B
CE
LYS
7
1
Y
1
B
NZ
LYS
7
B
NZ
LYS
7
1
Y
1
B
CG
LYS
41
B
CG
LYS
41
1
Y
1
B
CD
LYS
41
B
CD
LYS
41
1
Y
1
B
CE
LYS
41
B
CE
LYS
41
1
Y
1
B
NZ
LYS
41
B
NZ
LYS
41
1
Y
1
B
CG
LYS
43
B
CG
LYS
43
1
Y
1
B
CD
LYS
43
B
CD
LYS
43
1
Y
1
B
CE
LYS
43
B
CE
LYS
43
1
Y
1
B
NZ
LYS
43
B
NZ
LYS
43
1
Y
27.975
-0.67
0.00
0.00
0.34
0.00
0.33
0.953
0.927
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23410
0.18020
0.18289
1.90
42.41
719
15063
13416
5.1
93.86
7.260
0.109
RANDOM
1
THROUGHOUT
3.0
3.0
MOLECULAR REPLACEMENT
0.163
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.90
42.41
93
1630
49
0
1488
0.008
0.022
1604
0.001
0.020
1073
1.474
2.015
2193
0.856
3.000
2646
6.092
5.000
204
42.570
25.088
57
11.073
15.000
261
21.123
15.000
8
0.088
0.200
261
0.004
0.020
1756
0.001
0.020
291
0.186
0.200
217
0.197
0.200
1101
0.170
0.200
733
0.084
0.200
901
0.130
0.200
71
0.186
0.200
8
0.199
0.200
45
0.189
0.200
12
0.707
1.500
1064
0.176
1.500
420
0.960
2.000
1629
1.475
3.000
647
2.133
4.500
564
0.385
0.212
1.947
48
914
914
20
88.18
1.9
42.41
4Q1X
14168
14168
3.0
3.0
0.063
1
15.2
7.1
93.86
1.9
1.97
1346
1
7.1
91.4
refinement
REFMAC
5.3.0037
data collection
StructureStudio
data reduction
HKL-2000
data scaling
HKL-2000
phasing
AMoRE
Mutations Outside the Active Site of HIV-1 Protease Alter Enzyme Structure and Dynamic Ensemble of the Active Site to Confer Drug Resistance
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
1
6
B
GLY
86
B
GLY
86
HELX_P
B
THR
91
B
THR
91
1
2
6
B
GLN
92
B
GLN
92
HELX_P
B
GLY
94
B
GLY
94
5
3
3
hydrolase/hydrolase inhibitor
HIV-1 protease, AIDS, inhibitor complex, hydrolase-hydrolase inhibitor complex
V5Y949_9HIV1
UNP
1
1
V5Y949
PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
1
99
4Q1X
1
99
V5Y949
A
1
1
99
1
99
4Q1X
1
99
V5Y949
B
1
1
99
1
GLN
engineered mutation
LYS
7
4Q1X
A
V5Y949
UNP
7
7
1
VAL
engineered mutation
ILE
32
4Q1X
A
V5Y949
UNP
32
32
2
GLN
engineered mutation
LYS
7
4Q1X
B
V5Y949
UNP
7
7
2
VAL
engineered mutation
ILE
32
4Q1X
B
V5Y949
UNP
32
32
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
ILE
3
A
ILE
3
B
THR
96
B
THR
96
B
ASN
98
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
2
B
GLN
2
B
THR
4
B
THR
4
A
LYS
43
A
LYS
43
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
VAL
77
A
VAL
77
A
ILE
32
A
ILE
32
A
LEU
33
A
LEU
33
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
B
TRP
42
B
TRP
42
B
GLY
49
B
GLY
49
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
HIS
69
B
HIS
69
B
VAL
77
B
VAL
77
B
ILE
32
B
ILE
32
B
LEU
33
B
LEU
33
B
ASN
83
B
ASN
83
B
ILE
85
B
ILE
85
B
GLN
18
B
GLN
18
B
LEU
24
B
LEU
24
B
LEU
10
B
LEU
10
B
ILE
15
B
ILE
15
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
BINDING SITE FOR RESIDUE 017 A 101
A
017
101
Software
17
BINDING SITE FOR RESIDUE GOL A 102
A
GOL
102
Software
3
BINDING SITE FOR RESIDUE PO4 B 101
B
PO4
101
Software
8
A
ASP
25
A
ASP
25
17
1_555
A
GLY
27
A
GLY
27
17
1_555
A
ALA
28
A
ALA
28
17
1_555
A
ASP
29
A
ASP
29
17
1_555
A
ASP
30
A
ASP
30
17
1_555
A
GLY
48
A
GLY
48
17
1_555
A
ILE
50
A
ILE
50
17
1_555
A
HOH
204
F
HOH
17
1_555
A
HOH
235
F
HOH
17
1_555
B
ASP
25
B
ASP
25
17
1_555
B
GLY
27
B
GLY
27
17
1_555
B
ALA
28
B
ALA
28
17
1_555
B
ASP
30
B
ASP
30
17
1_555
B
GLY
48
B
GLY
48
17
1_555
B
GLY
49
B
GLY
49
17
1_555
B
ILE
50
B
ILE
50
17
1_555
B
VAL
82
B
VAL
82
17
1_555
A
ASP
29
A
ASP
29
3
1_555
A
ARG
87
A
ARG
87
3
1_555
B
ARG
8
B
ARG
8
3
1_555
A
ARG
14
A
ARG
14
8
1_455
A
GLY
16
A
GLY
16
8
1_455
A
GLY
17
A
GLY
17
8
1_455
B
GLY
16
B
GLY
16
8
1_555
B
HOH
210
G
HOH
8
1_555
B
HOH
231
G
HOH
8
1_555
B
HOH
232
G
HOH
8
1_555
B
HOH
233
G
HOH
8
1_555
19
P 21 21 21