0.009248
0.000000
0.005703
0.000000
0.026948
0.000000
0.000000
0.000000
0.019142
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
121.66
90.00
108.136
37.109
61.376
C17 H36 O9
384.462
2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O3 S
137.158
n
S-HYDROXYCYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
I -1
126.904
IODIDE ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C8 H18 O5
194.226
TETRAETHYLENE GLYCOL
non-polymer
C6 H14 O4
150.173
TRIETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a hypothetical protein (BACUNI_04292) from Bacteroides uniformis ATCC 8492 at 1.27 A resolution
10.2210/pdb4q53/pdb
pdb_00004q53
100
1
1
FLAT MIRROR (VERTICAL FOCUSING), SINGLE CRYSTAL SI(111) BENT MONOCHROMATOR (HORIZONTAL FOCUSING)
PIXEL
2013-11-25
DECTRIS PILATUS 6M
SINGLE CRYSTAL SI(111) BENT
SINGLE WAVELENGTH
M
x-ray
1
0.97882
1.0
BL11-1
SSRL
0.97882
SYNCHROTRON
SSRL BEAMLINE BL11-1
12458.679
Uncharacterized protein
UNP residues 22-130
2
man
polymer
126.904
IODIDE ION
9
syn
non-polymer
150.173
TRIETHYLENE GLYCOL
2
syn
non-polymer
35.453
CHLORIDE ION
9
syn
non-polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
384.462
2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
1
syn
non-polymer
194.226
TETRAETHYLENE GLYCOL
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
184
nat
water
no
yes
GQNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHADKRTAEGT(MSE)AAFFSNHKVGSFNVNHQGKRDESGFVIG
IL(MSE)TANGNFRVN(CSO)FFRKVQNKYVIHQIRIDKTDE
GQNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHADKRTAEGTMAAFFSNHKVGSFNVNHQGKRDESGFVIGILMT
ANGNFRVNCFFRKVQNKYVIHQIRIDKTDE
A,B
JCSG-417916
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
8492
BACUNI_04292
411479
Bacteroides uniformis
562
Escherichia coli
PB1
Plasmid
SpeedE5T
1
2.10
41.52
VAPOR DIFFUSION, SITTING DROP
0.07M Sodium Iodide, 30.00% polyethylene glycol 3350, 0.01M ferric(III) chloride, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
software
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Structure summary
Refinement description
Database references
Derived calculations
1
0
2014-07-16
1
1
2014-12-24
1
2
2017-11-22
1
3
2023-02-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2014-04-15
REL
REL
IOD
IODIDE ION
PGE
TRIETHYLENE GLYCOL
CL
CHLORIDE ION
EDO
1,2-ETHANEDIOL
7PG
2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
PG4
TETRAETHYLENE GLYCOL
NA
SODIUM ION
HOH
water
THE CONSTRUCT (RESIDUES 21-130) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
IOD
132
2
IOD
IOD
201
A
IOD
133
2
IOD
IOD
202
A
IOD
135
2
IOD
IOD
203
A
IOD
136
2
IOD
IOD
204
A
IOD
139
2
IOD
IOD
205
A
PGE
142
3
PGE
PGE
206
A
PGE
143
3
PGE
PGE
207
A
CL
146
4
CL
CL
208
A
CL
148
4
CL
CL
209
A
CL
149
4
CL
CL
210
A
CL
152
4
CL
CL
211
A
EDO
154
5
EDO
EDO
212
A
IOD
131
2
IOD
IOD
201
B
IOD
134
2
IOD
IOD
202
B
IOD
137
2
IOD
IOD
203
B
IOD
138
2
IOD
IOD
204
B
7PG
140
6
7PG
7PG
205
B
PG4
141
7
PG4
PG4
206
B
CL
144
4
CL
CL
207
B
CL
145
4
CL
CL
208
B
CL
147
4
CL
CL
209
B
CL
150
4
CL
CL
210
B
CL
151
4
CL
CL
211
B
NA
153
8
NA
NA
212
B
HOH
155
9
HOH
HOH
301
A
HOH
156
9
HOH
HOH
302
A
HOH
159
9
HOH
HOH
303
A
HOH
162
9
HOH
HOH
304
A
HOH
166
9
HOH
HOH
305
A
HOH
170
9
HOH
HOH
306
A
HOH
173
9
HOH
HOH
307
A
HOH
174
9
HOH
HOH
308
A
HOH
175
9
HOH
HOH
309
A
HOH
176
9
HOH
HOH
310
A
HOH
177
9
HOH
HOH
311
A
HOH
178
9
HOH
HOH
312
A
HOH
179
9
HOH
HOH
313
A
HOH
180
9
HOH
HOH
314
A
HOH
181
9
HOH
HOH
315
A
HOH
195
9
HOH
HOH
316
A
HOH
199
9
HOH
HOH
317
A
HOH
200
9
HOH
HOH
318
A
HOH
203
9
HOH
HOH
319
A
HOH
204
9
HOH
HOH
320
A
HOH
212
9
HOH
HOH
321
A
HOH
214
9
HOH
HOH
322
A
HOH
215
9
HOH
HOH
323
A
HOH
216
9
HOH
HOH
324
A
HOH
217
9
HOH
HOH
325
A
HOH
218
9
HOH
HOH
326
A
HOH
219
9
HOH
HOH
327
A
HOH
226
9
HOH
HOH
328
A
HOH
227
9
HOH
HOH
329
A
HOH
228
9
HOH
HOH
330
A
HOH
229
9
HOH
HOH
331
A
HOH
230
9
HOH
HOH
332
A
HOH
232
9
HOH
HOH
333
A
HOH
233
9
HOH
HOH
334
A
HOH
234
9
HOH
HOH
335
A
HOH
235
9
HOH
HOH
336
A
HOH
236
9
HOH
HOH
337
A
HOH
237
9
HOH
HOH
338
A
HOH
238
9
HOH
HOH
339
A
HOH
239
9
HOH
HOH
340
A
HOH
240
9
HOH
HOH
341
A
HOH
241
9
HOH
HOH
342
A
HOH
242
9
HOH
HOH
343
A
HOH
243
9
HOH
HOH
344
A
HOH
255
9
HOH
HOH
345
A
HOH
257
9
HOH
HOH
346
A
HOH
258
9
HOH
HOH
347
A
HOH
267
9
HOH
HOH
348
A
HOH
268
9
HOH
HOH
349
A
HOH
269
9
HOH
HOH
350
A
HOH
272
9
HOH
HOH
351
A
HOH
273
9
HOH
HOH
352
A
HOH
274
9
HOH
HOH
353
A
HOH
275
9
HOH
HOH
354
A
HOH
277
9
HOH
HOH
355
A
HOH
279
9
HOH
HOH
356
A
HOH
280
9
HOH
HOH
357
A
HOH
281
9
HOH
HOH
358
A
HOH
285
9
HOH
HOH
359
A
HOH
287
9
HOH
HOH
360
A
HOH
288
9
HOH
HOH
361
A
HOH
289
9
HOH
HOH
362
A
HOH
290
9
HOH
HOH
363
A
HOH
291
9
HOH
HOH
364
A
HOH
300
9
HOH
HOH
365
A
HOH
303
9
HOH
HOH
366
A
HOH
304
9
HOH
HOH
367
A
HOH
305
9
HOH
HOH
368
A
HOH
306
9
HOH
HOH
369
A
HOH
307
9
HOH
HOH
370
A
HOH
308
9
HOH
HOH
371
A
HOH
309
9
HOH
HOH
372
A
HOH
310
9
HOH
HOH
373
A
HOH
316
9
HOH
HOH
374
A
HOH
323
9
HOH
HOH
375
A
HOH
325
9
HOH
HOH
376
A
HOH
326
9
HOH
HOH
377
A
HOH
327
9
HOH
HOH
378
A
HOH
328
9
HOH
HOH
379
A
HOH
329
9
HOH
HOH
380
A
HOH
330
9
HOH
HOH
381
A
HOH
331
9
HOH
HOH
382
A
HOH
332
9
HOH
HOH
383
A
HOH
333
9
HOH
HOH
384
A
HOH
334
9
HOH
HOH
385
A
HOH
335
9
HOH
HOH
386
A
HOH
336
9
HOH
HOH
387
A
HOH
157
9
HOH
HOH
301
B
HOH
158
9
HOH
HOH
302
B
HOH
160
9
HOH
HOH
303
B
HOH
161
9
HOH
HOH
304
B
HOH
163
9
HOH
HOH
305
B
HOH
164
9
HOH
HOH
306
B
HOH
165
9
HOH
HOH
307
B
HOH
167
9
HOH
HOH
308
B
HOH
168
9
HOH
HOH
309
B
HOH
169
9
HOH
HOH
310
B
HOH
171
9
HOH
HOH
311
B
HOH
172
9
HOH
HOH
312
B
HOH
182
9
HOH
HOH
313
B
HOH
183
9
HOH
HOH
314
B
HOH
184
9
HOH
HOH
315
B
HOH
185
9
HOH
HOH
316
B
HOH
186
9
HOH
HOH
317
B
HOH
187
9
HOH
HOH
318
B
HOH
188
9
HOH
HOH
319
B
HOH
189
9
HOH
HOH
320
B
HOH
190
9
HOH
HOH
321
B
HOH
191
9
HOH
HOH
322
B
HOH
192
9
HOH
HOH
323
B
HOH
193
9
HOH
HOH
324
B
HOH
194
9
HOH
HOH
325
B
HOH
196
9
HOH
HOH
326
B
HOH
197
9
HOH
HOH
327
B
HOH
198
9
HOH
HOH
328
B
HOH
201
9
HOH
HOH
329
B
HOH
202
9
HOH
HOH
330
B
HOH
205
9
HOH
HOH
331
B
HOH
206
9
HOH
HOH
332
B
HOH
207
9
HOH
HOH
333
B
HOH
208
9
HOH
HOH
334
B
HOH
209
9
HOH
HOH
335
B
HOH
210
9
HOH
HOH
336
B
HOH
211
9
HOH
HOH
337
B
HOH
213
9
HOH
HOH
338
B
HOH
220
9
HOH
HOH
339
B
HOH
221
9
HOH
HOH
340
B
HOH
222
9
HOH
HOH
341
B
HOH
223
9
HOH
HOH
342
B
HOH
224
9
HOH
HOH
343
B
HOH
225
9
HOH
HOH
344
B
HOH
231
9
HOH
HOH
345
B
HOH
244
9
HOH
HOH
346
B
HOH
245
9
HOH
HOH
347
B
HOH
246
9
HOH
HOH
348
B
HOH
247
9
HOH
HOH
349
B
HOH
248
9
HOH
HOH
350
B
HOH
249
9
HOH
HOH
351
B
HOH
250
9
HOH
HOH
352
B
HOH
251
9
HOH
HOH
353
B
HOH
252
9
HOH
HOH
354
B
HOH
253
9
HOH
HOH
355
B
HOH
254
9
HOH
HOH
356
B
HOH
256
9
HOH
HOH
357
B
HOH
259
9
HOH
HOH
358
B
HOH
260
9
HOH
HOH
359
B
HOH
261
9
HOH
HOH
360
B
HOH
262
9
HOH
HOH
361
B
HOH
263
9
HOH
HOH
362
B
HOH
264
9
HOH
HOH
363
B
HOH
265
9
HOH
HOH
364
B
HOH
266
9
HOH
HOH
365
B
HOH
270
9
HOH
HOH
366
B
HOH
271
9
HOH
HOH
367
B
HOH
276
9
HOH
HOH
368
B
HOH
278
9
HOH
HOH
369
B
HOH
282
9
HOH
HOH
370
B
HOH
283
9
HOH
HOH
371
B
HOH
284
9
HOH
HOH
372
B
HOH
286
9
HOH
HOH
373
B
HOH
292
9
HOH
HOH
374
B
HOH
293
9
HOH
HOH
375
B
HOH
294
9
HOH
HOH
376
B
HOH
295
9
HOH
HOH
377
B
HOH
296
9
HOH
HOH
378
B
HOH
297
9
HOH
HOH
379
B
HOH
298
9
HOH
HOH
380
B
HOH
299
9
HOH
HOH
381
B
HOH
301
9
HOH
HOH
382
B
HOH
302
9
HOH
HOH
383
B
HOH
311
9
HOH
HOH
384
B
HOH
312
9
HOH
HOH
385
B
HOH
313
9
HOH
HOH
386
B
HOH
314
9
HOH
HOH
387
B
HOH
315
9
HOH
HOH
388
B
HOH
317
9
HOH
HOH
389
B
HOH
318
9
HOH
HOH
390
B
HOH
319
9
HOH
HOH
391
B
HOH
320
9
HOH
HOH
392
B
HOH
321
9
HOH
HOH
393
B
HOH
322
9
HOH
HOH
394
B
HOH
324
9
HOH
HOH
395
B
HOH
337
9
HOH
HOH
396
B
HOH
338
9
HOH
HOH
397
B
n
1
0
A
n
2
22
A
ASN
23
n
3
ASN
23
A
VAL
24
n
4
VAL
24
A
PRO
25
n
5
PRO
25
A
GLU
26
n
6
GLU
26
A
GLY
27
n
7
GLY
27
A
VAL
28
n
8
VAL
28
A
ILE
29
n
9
ILE
29
A
GLY
30
n
10
GLY
30
A
ALA
31
n
11
ALA
31
A
PHE
32
n
12
PHE
32
A
LYS
33
n
13
LYS
33
A
GLU
34
n
14
GLU
34
A
GLY
35
n
15
GLY
35
A
ASN
36
n
16
ASN
36
A
SER
37
n
17
SER
37
A
GLN
38
n
18
GLN
38
A
GLU
39
n
19
GLU
39
A
LEU
40
n
20
LEU
40
A
ASN
41
n
21
ASN
41
A
LYS
42
n
22
LYS
42
A
TYR
43
n
23
TYR
43
A
LEU
44
n
24
LEU
44
A
GLY
45
n
25
GLY
45
A
ASP
46
n
26
ASP
46
A
LYS
47
n
27
LYS
47
A
VAL
48
n
28
VAL
48
A
ASP
49
n
29
ASP
49
A
LEU
50
n
30
LEU
50
A
ILE
51
n
31
ILE
51
A
ILE
52
n
32
ILE
52
A
GLN
53
n
33
GLN
53
A
ASN
54
n
34
ASN
54
A
LYS
55
n
35
LYS
55
A
SER
56
n
36
SER
56
A
THR
57
n
37
THR
57
A
HIS
58
n
38
HIS
58
A
ALA
59
n
39
ALA
59
A
ASP
60
n
40
ASP
60
A
LYS
61
n
41
LYS
61
A
ARG
62
n
42
ARG
62
A
THR
63
n
43
THR
63
A
ALA
64
n
44
ALA
64
A
GLU
65
n
45
GLU
65
A
GLY
66
n
46
GLY
66
A
THR
67
n
47
THR
67
A
MSE
68
n
48
MSE
68
A
ALA
69
n
49
ALA
69
A
ALA
70
n
50
ALA
70
A
PHE
71
n
51
PHE
71
A
PHE
72
n
52
PHE
72
A
SER
73
n
53
SER
73
A
ASN
74
n
54
ASN
74
A
HIS
75
n
55
HIS
75
A
LYS
76
n
56
LYS
76
A
VAL
77
n
57
VAL
77
A
GLY
78
n
58
GLY
78
A
SER
79
n
59
SER
79
A
PHE
80
n
60
PHE
80
A
ASN
81
n
61
ASN
81
A
VAL
82
n
62
VAL
82
A
ASN
83
n
63
ASN
83
A
HIS
84
n
64
HIS
84
A
GLN
85
n
65
GLN
85
A
GLY
86
n
66
GLY
86
A
LYS
87
n
67
LYS
87
A
ARG
88
n
68
ARG
88
A
ASP
89
n
69
ASP
89
A
GLU
90
n
70
GLU
90
A
SER
91
n
71
SER
91
A
GLY
92
n
72
GLY
92
A
PHE
93
n
73
PHE
93
A
VAL
94
n
74
VAL
94
A
ILE
95
n
75
ILE
95
A
GLY
96
n
76
GLY
96
A
ILE
97
n
77
ILE
97
A
LEU
98
n
78
LEU
98
A
MSE
99
n
79
MSE
99
A
THR
100
n
80
THR
100
A
ALA
101
n
81
ALA
101
A
ASN
102
n
82
ASN
102
A
GLY
103
n
83
GLY
103
A
ASN
104
n
84
ASN
104
A
PHE
105
n
85
PHE
105
A
ARG
106
n
86
ARG
106
A
VAL
107
n
87
VAL
107
A
ASN
108
n
88
ASN
108
A
CSO
109
n
89
CSO
109
A
PHE
110
n
90
PHE
110
A
PHE
111
n
91
PHE
111
A
ARG
112
n
92
ARG
112
A
LYS
113
n
93
LYS
113
A
VAL
114
n
94
VAL
114
A
GLN
115
n
95
GLN
115
A
ASN
116
n
96
ASN
116
A
LYS
117
n
97
LYS
117
A
TYR
118
n
98
TYR
118
A
VAL
119
n
99
VAL
119
A
ILE
120
n
100
ILE
120
A
HIS
121
n
101
HIS
121
A
GLN
122
n
102
GLN
122
A
ILE
123
n
103
ILE
123
A
ARG
124
n
104
ARG
124
A
ILE
125
n
105
ILE
125
A
ASP
126
n
106
ASP
126
A
LYS
127
n
107
LYS
127
A
THR
128
n
108
THR
128
A
ASP
129
n
109
ASP
129
A
GLU
130
n
110
GLU
130
A
GLY
21
n
1
GLY
0
B
GLN
22
n
2
GLN
22
B
ASN
23
n
3
ASN
23
B
VAL
24
n
4
VAL
24
B
PRO
25
n
5
PRO
25
B
GLU
26
n
6
GLU
26
B
GLY
27
n
7
GLY
27
B
VAL
28
n
8
VAL
28
B
ILE
29
n
9
ILE
29
B
GLY
30
n
10
GLY
30
B
ALA
31
n
11
ALA
31
B
PHE
32
n
12
PHE
32
B
LYS
33
n
13
LYS
33
B
GLU
34
n
14
GLU
34
B
GLY
35
n
15
GLY
35
B
ASN
36
n
16
ASN
36
B
SER
37
n
17
SER
37
B
GLN
38
n
18
GLN
38
B
GLU
39
n
19
GLU
39
B
LEU
40
n
20
LEU
40
B
ASN
41
n
21
ASN
41
B
LYS
42
n
22
LYS
42
B
TYR
43
n
23
TYR
43
B
LEU
44
n
24
LEU
44
B
GLY
45
n
25
GLY
45
B
ASP
46
n
26
ASP
46
B
LYS
47
n
27
LYS
47
B
VAL
48
n
28
VAL
48
B
ASP
49
n
29
ASP
49
B
LEU
50
n
30
LEU
50
B
ILE
51
n
31
ILE
51
B
ILE
52
n
32
ILE
52
B
GLN
53
n
33
GLN
53
B
ASN
54
n
34
ASN
54
B
LYS
55
n
35
LYS
55
B
SER
56
n
36
SER
56
B
THR
57
n
37
THR
57
B
HIS
58
n
38
HIS
58
B
ALA
59
n
39
ALA
59
B
ASP
60
n
40
ASP
60
B
LYS
61
n
41
LYS
61
B
ARG
62
n
42
ARG
62
B
THR
63
n
43
THR
63
B
ALA
64
n
44
ALA
64
B
GLU
65
n
45
GLU
65
B
GLY
66
n
46
GLY
66
B
THR
67
n
47
THR
67
B
MSE
68
n
48
MSE
68
B
ALA
69
n
49
ALA
69
B
ALA
70
n
50
ALA
70
B
PHE
71
n
51
PHE
71
B
PHE
72
n
52
PHE
72
B
SER
73
n
53
SER
73
B
ASN
74
n
54
ASN
74
B
HIS
75
n
55
HIS
75
B
LYS
76
n
56
LYS
76
B
VAL
77
n
57
VAL
77
B
GLY
78
n
58
GLY
78
B
SER
79
n
59
SER
79
B
PHE
80
n
60
PHE
80
B
ASN
81
n
61
ASN
81
B
VAL
82
n
62
VAL
82
B
ASN
83
n
63
ASN
83
B
HIS
84
n
64
HIS
84
B
GLN
85
n
65
GLN
85
B
GLY
86
n
66
GLY
86
B
LYS
87
n
67
LYS
87
B
ARG
88
n
68
ARG
88
B
ASP
89
n
69
ASP
89
B
GLU
90
n
70
GLU
90
B
SER
91
n
71
SER
91
B
GLY
92
n
72
GLY
92
B
PHE
93
n
73
PHE
93
B
VAL
94
n
74
VAL
94
B
ILE
95
n
75
ILE
95
B
GLY
96
n
76
GLY
96
B
ILE
97
n
77
ILE
97
B
LEU
98
n
78
LEU
98
B
MSE
99
n
79
MSE
99
B
THR
100
n
80
THR
100
B
ALA
101
n
81
ALA
101
B
ASN
102
n
82
ASN
102
B
GLY
103
n
83
GLY
103
B
ASN
104
n
84
ASN
104
B
PHE
105
n
85
PHE
105
B
ARG
106
n
86
ARG
106
B
VAL
107
n
87
VAL
107
B
ASN
108
n
88
ASN
108
B
CSO
109
n
89
CSO
109
B
PHE
110
n
90
PHE
110
B
PHE
111
n
91
PHE
111
B
ARG
112
n
92
ARG
112
B
LYS
113
n
93
LYS
113
B
VAL
114
n
94
VAL
114
B
GLN
115
n
95
GLN
115
B
ASN
116
n
96
ASN
116
B
LYS
117
n
97
LYS
117
B
TYR
118
n
98
TYR
118
B
VAL
119
n
99
VAL
119
B
ILE
120
n
100
ILE
120
B
HIS
121
n
101
HIS
121
B
GLN
122
n
102
GLN
122
B
ILE
123
n
103
ILE
123
B
ARG
124
n
104
ARG
124
B
ILE
125
n
105
ILE
125
B
ASP
126
n
106
ASP
126
B
LYS
127
n
107
LYS
127
B
THR
128
n
108
THR
128
B
ASP
129
n
109
ASP
129
B
n
110
130
B
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
B
PG4
206
T
O5
PG4
1_555
B
NA
212
Z
NA
NA
1_555
B
PG4
206
T
O4
PG4
1_555
62.2
A
MSE
68
SELENOMETHIONINE
A
MSE
48
MET
A
MSE
99
SELENOMETHIONINE
A
MSE
79
MET
A
CSO
109
S-HYDROXYCYSTEINE
A
CSO
89
CYS
B
MSE
68
SELENOMETHIONINE
B
MSE
48
MET
B
MSE
99
SELENOMETHIONINE
B
MSE
79
MET
B
CSO
109
S-HYDROXYCYSTEINE
B
CSO
89
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
57
A
O
THR
37
A
N
LEU
50
A
N
LEU
30
A
N
ILE
51
A
N
ILE
31
A
O
ILE
125
A
O
ILE
105
A
O
ASP
126
A
O
ASP
106
A
N
ARG
106
A
N
ARG
86
A
O
PHE
105
A
O
PHE
85
A
N
LEU
98
A
N
LEU
78
A
O
MSE
99
A
O
MSE
79
A
N
GLY
78
A
N
GLY
58
B
O
LYS
55
B
O
LYS
35
B
N
ILE
52
B
N
ILE
32
B
N
ASP
49
B
N
ASP
29
B
O
HIS
121
B
O
HIS
101
B
O
LYS
117
B
O
LYS
97
B
N
VAL
114
B
N
VAL
94
B
O
PHE
105
B
O
PHE
85
B
N
LEU
98
B
N
LEU
78
B
O
MSE
99
B
O
MSE
79
B
N
GLY
78
B
N
GLY
58
1
B
NA
212
Z
NA
1
A
CD
ARG
88
A
CD
ARG
68
1
Y
1
A
NE
ARG
88
A
NE
ARG
68
1
Y
1
A
CZ
ARG
88
A
CZ
ARG
68
1
Y
1
A
NH1
ARG
88
A
NH1
ARG
68
1
Y
1
A
NH2
ARG
88
A
NH2
ARG
68
1
Y
1
A
CG
ASN
116
A
CG
ASN
96
1
Y
1
A
OD1
ASN
116
A
OD1
ASN
96
1
Y
1
A
ND2
ASN
116
A
ND2
ASN
96
1
Y
1
B
CE
LYS
113
B
CE
LYS
93
1
Y
1
B
NZ
LYS
113
B
NZ
LYS
93
1
Y
1
B
CG
ASN
116
B
CG
ASN
96
1
Y
1
B
OD1
ASN
116
B
OD1
ASN
96
1
Y
1
B
ND2
ASN
116
B
ND2
ASN
96
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
GLN
22
A
GLN
2
1
Y
1
B
GLU
130
B
GLU
110
1
Y
1
A
ASN
41
11.56
1
A
ASN
41
11.35
1
B
ASP
89
52.11
-121.01
20.42
1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 3. IODIDES (IOD) FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE. THE MODELING OF IODIDE IS SUPPORTED BY ANOMALOUS DIFFERENCE MAPS. 4. POLYETHYLENE GLYCOL FRAGMENTS (7PE,PEG, AND PG4) FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE. 5. SODIUM (NA) AND CHLORIDE (CL) FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE. 1,2- ETHANEDIOL (EDO), USED AS A CRYOPROTECTANT, HAS ALSO BEEN MODELED INTO THE STRUCTURE. 5. HYDROGENS HAVE BEEN ADDED AT THE RIDING POSITIONS. 6. ELECTRON DENSITY INDICATES THAT CYS 109 ON THE TWO SUBUNITS IN THE ASYMMETRIC UNIT ARE OXIDIZED; THEREFORE, THESE RESIDUES WERE MODELED AS S-HYDROXYCYSTEINE (CSO).
0.176
0.154
0.155
1.27
28.00
2753
53907
5.110
98.1
1.000
0.200
0.090
1
SAD
14.200
MLHL
FLAT BULK SOLVENT MODEL
1.27
28.00
184
1970
82
0
1704
0.011
2084
1.725
2813
18.421
865
0.079
293
0.010
372
0.1966
0.1547
1.2919
145
2514
98.00
0.2037
0.1416
1.3154
131
2578
99.00
0.1839
0.1329
1.3407
131
2506
98.00
0.1633
0.1276
1.3681
149
2558
98.00
0.1528
0.1214
1.3978
131
2560
99.00
0.1821
0.1147
1.4303
119
2585
98.00
0.1803
0.1142
1.4661
129
2587
99.00
0.1472
0.1039
1.5057
151
2552
99.00
0.1295
0.1020
1.5500
124
2543
98.00
0.1483
0.1049
1.6000
138
2515
98.00
0.1528
0.1102
1.6572
149
2579
99.00
0.1528
0.1150
1.7236
141
2574
99.00
0.1809
0.1236
1.8020
165
2571
99.00
0.1500
0.1276
1.8970
154
2542
99.00
0.1759
0.1278
2.0158
130
2487
96.00
0.1636
0.1348
2.1714
129
2622
99.00
0.1685
0.1478
2.3898
164
2556
99.00
0.1867
0.1616
2.7353
121
2552
96.00
0.1952
0.1768
3.4450
131
2534
96.00
0.1883
0.2033
26.9079
121
2639
96.00
14.53
1.270
28.002
4Q53
53919
-3.000
1
97.0
0.38500
1.27
1.32
2.600
1
97.7
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
phasing
Eric de La Fortelle
sharp-develop@globalphasing.com
http://www.globalphasing.com/sharp/
SHARP
package
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
refinement
P.D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.4
data reduction
XDS
phasing
SHELXD
Y
Crystal structure of a DUF4783 family protein (BACUNI_04292) from Bacteroides uniformis ATCC 8492 at 1.27 A resolution
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
2
N
N
2
N
N
2
N
N
2
N
N
6
N
N
7
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
8
N
N
9
N
N
9
N
N
A
PRO
25
A
PRO
5
HELX_P
A
GLY
35
A
GLY
15
1
1
11
A
ASN
36
A
ASN
16
HELX_P
A
ASN
41
A
ASN
21
1
2
6
A
LYS
61
A
LYS
41
HELX_P
A
HIS
75
A
HIS
55
1
3
15
B
PRO
25
B
PRO
5
HELX_P
B
GLY
35
B
GLY
15
1
4
11
B
ASN
36
B
ASN
16
HELX_P
B
LYS
42
B
LYS
22
1
5
7
B
LYS
61
B
LYS
41
HELX_P
B
HIS
75
B
HIS
55
1
6
15
covale
1.327
both
A
THR
67
A
C
THR
47
1_555
A
MSE
68
A
N
MSE
48
1_555
covale
1.335
both
A
MSE
68
A
C
MSE
48
1_555
A
ALA
69
A
N
ALA
49
1_555
covale
1.332
both
A
LEU
98
A
C
LEU
78
1_555
A
MSE
99
A
N
MSE
79
1_555
covale
1.330
both
A
MSE
99
A
C
MSE
79
1_555
A
THR
100
A
N
THR
80
1_555
covale
1.324
both
A
ASN
108
A
C
ASN
88
1_555
A
CSO
109
A
N
CSO
89
1_555
covale
1.328
both
A
CSO
109
A
C
CSO
89
1_555
A
PHE
110
A
N
PHE
90
1_555
covale
1.334
both
B
THR
67
B
C
THR
47
1_555
B
MSE
68
B
N
MSE
48
1_555
covale
1.339
both
B
MSE
68
B
C
MSE
48
1_555
B
ALA
69
B
N
ALA
49
1_555
covale
1.326
both
A
B
LEU
98
B
C
LEU
78
1_555
B
MSE
99
B
N
MSE
79
1_555
covale
1.328
both
B
B
LEU
98
B
C
LEU
78
1_555
B
MSE
99
B
N
MSE
79
1_555
covale
1.325
both
A
B
MSE
99
B
C
MSE
79
1_555
B
THR
100
B
N
THR
80
1_555
covale
1.332
both
B
B
MSE
99
B
C
MSE
79
1_555
B
THR
100
B
N
THR
80
1_555
covale
1.319
both
B
ASN
108
B
C
ASN
88
1_555
B
CSO
109
B
N
CSO
89
1_555
covale
1.323
both
B
CSO
109
B
C
CSO
89
1_555
B
PHE
110
B
N
PHE
90
1_555
metalc
2.763
B
PG4
206
T
O5
PG4
1_555
B
NA
212
Z
NA
NA
1_555
metalc
2.984
B
PG4
206
T
O4
PG4
1_555
B
NA
212
Z
NA
NA
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Cystatin-like fold, DUF4783, PF16022 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION
A
VAL
24
A
VAL
4
1
A
PRO
25
A
PRO
5
8.91
B
VAL
24
B
VAL
4
1
B
PRO
25
B
PRO
5
9.21
A7V9L7_BACUN
UNP
1
22
A7V9L7
QNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHADKRTAEGTMAAFFSNHKVGSFNVNHQGKRDESGFVIGILMTA
NGNFRVNCFFRKVQNKYVIHQIRIDKTDE
22
130
4Q53
22
130
A7V9L7
A
1
2
110
22
130
4Q53
22
130
A7V9L7
B
1
2
110
1
expression tag
GLY
0
4Q53
A
A7V9L7
UNP
1
2
expression tag
GLY
0
4Q53
B
A7V9L7
UNP
1
6
6
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
55
A
LYS
35
A
ASP
60
A
ASP
40
A
LEU
44
A
LEU
24
A
ILE
52
A
ILE
32
A
LYS
117
A
LYS
97
A
LYS
127
A
LYS
107
A
GLY
103
A
GLY
83
A
VAL
114
A
VAL
94
A
SER
91
A
SER
71
A
THR
100
A
THR
80
A
VAL
77
A
VAL
57
A
LYS
87
A
LYS
67
B
LYS
55
B
LYS
35
B
ASP
60
B
ASP
40
B
LEU
44
B
LEU
24
B
ILE
52
B
ILE
32
B
LYS
117
B
LYS
97
B
LYS
127
B
LYS
107
B
GLY
103
B
GLY
83
B
VAL
114
B
VAL
94
B
SER
91
B
SER
71
B
THR
100
B
THR
80
B
VAL
77
B
VAL
57
B
ARG
88
B
ARG
68
BINDING SITE FOR RESIDUE IOD A 201
A
IOD
201
Software
3
BINDING SITE FOR RESIDUE IOD A 202
A
IOD
202
Software
2
BINDING SITE FOR RESIDUE IOD A 203
A
IOD
203
Software
3
BINDING SITE FOR RESIDUE IOD A 204
A
IOD
204
Software
3
BINDING SITE FOR RESIDUE IOD A 205
A
IOD
205
Software
4
BINDING SITE FOR RESIDUE PGE A 206
A
PGE
206
Software
8
BINDING SITE FOR RESIDUE PGE A 207
A
PGE
207
Software
7
BINDING SITE FOR RESIDUE CL A 208
A
CL
208
Software
2
BINDING SITE FOR RESIDUE CL A 209
A
CL
209
Software
4
BINDING SITE FOR RESIDUE CL A 210
A
CL
210
Software
3
BINDING SITE FOR RESIDUE CL A 211
A
CL
211
Software
1
BINDING SITE FOR RESIDUE EDO A 212
A
EDO
212
Software
5
BINDING SITE FOR RESIDUE IOD B 201
B
IOD
201
Software
2
BINDING SITE FOR RESIDUE IOD B 202
B
IOD
202
Software
2
BINDING SITE FOR RESIDUE IOD B 203
B
IOD
203
Software
3
BINDING SITE FOR RESIDUE IOD B 204
B
IOD
204
Software
2
BINDING SITE FOR RESIDUE 7PG B 205
B
7PG
205
Software
14
BINDING SITE FOR RESIDUE PG4 B 206
B
PG4
206
Software
8
BINDING SITE FOR RESIDUE CL B 207
B
CL
207
Software
1
BINDING SITE FOR RESIDUE CL B 208
B
CL
208
Software
1
BINDING SITE FOR RESIDUE CL B 209
B
CL
209
Software
4
BINDING SITE FOR RESIDUE CL B 210
B
CL
210
Software
1
BINDING SITE FOR RESIDUE CL B 211
B
CL
211
Software
2
BINDING SITE FOR RESIDUE NA B 212
B
NA
212
Software
2
A
ASN
83
A
ASN
63
3
1_555
A
ILE
97
A
ILE
77
3
1_555
A
ARG
106
A
ARG
86
3
1_555
A
VAL
24
A
VAL
4
2
1_555
A
IOD
205
G
IOD
2
1_555
A
GLN
85
A
GLN
65
3
1_555
A
LYS
87
A
LYS
67
3
1_555
A
IOD
205
G
IOD
3
1_555
B
GLN
85
B
GLN
65
3
2_656
B
LYS
87
B
LYS
67
3
2_656
B
IOD
202
P
IOD
3
2_656
A
GLY
86
A
GLY
66
4
1_555
A
LYS
87
A
LYS
67
4
1_555
A
IOD
202
D
IOD
4
1_555
A
IOD
203
E
IOD
4
1_555
A
ARG
88
A
ARG
68
8
1_555
A
SER
91
A
SER
71
8
1_555
A
GLY
92
A
GLY
72
8
1_555
A
PHE
93
A
PHE
73
8
1_555
A
PHE
110
A
PHE
90
8
1_555
A
PHE
111
A
PHE
91
8
1_555
A
ARG
112
A
ARG
92
8
1_555
B
CL
210
X
CL
8
2_656
A
ARG
106
A
ARG
86
7
1_555
A
PHE
110
A
PHE
90
7
1_555
A
HOH
321
AA
HOH
7
1_555
B
ARG
106
B
ARG
86
7
1_555
B
ARG
124
B
ARG
104
7
1_555
B
ASP
126
B
ASP
106
7
1_555
B
7PG
205
S
7PG
7
2_656
A
ASN
74
A
ASN
54
2
1_555
A
HOH
306
AA
HOH
2
1_555
A
VAL
82
A
VAL
62
4
1_555
A
CL
210
L
CL
4
1_555
A
HOH
325
AA
HOH
4
1_555
A
HOH
353
AA
HOH
4
1_555
A
LYS
33
A
LYS
13
3
1_555
A
ASN
81
A
ASN
61
3
1_555
A
CL
209
K
CL
3
1_555
A
THR
63
A
THR
43
1
1_555
A
LYS
55
A
LYS
35
5
4_545
A
ASP
129
A
ASP
109
5
1_555
B
LYS
47
B
LYS
27
5
1_555
B
ALA
59
B
ALA
39
5
1_555
B
ASP
60
B
ASP
40
5
1_555
B
IOD
204
R
IOD
2
1_555
B
IOD
204
R
IOD
2
2_656
A
IOD
204
F
IOD
2
2_656
B
GLY
86
B
GLY
66
2
1_555
A
HOH
321
AA
HOH
3
1_555
B
ASN
108
B
ASN
88
3
1_555
B
GLN
122
B
GLN
102
3
1_555
B
IOD
201
O
IOD
2
2_656
B
IOD
201
O
IOD
2
1_555
A
ASN
83
A
ASN
63
14
2_656
A
HIS
84
A
HIS
64
14
2_656
A
PHE
93
A
PHE
73
14
2_656
A
ARG
106
A
ARG
86
14
2_656
A
PGE
207
I
PGE
14
2_656
B
LYS
87
B
LYS
67
14
1_555
B
ARG
88
B
ARG
68
14
1_555
B
PHE
93
B
PHE
73
14
2_656
B
ARG
106
B
ARG
86
14
2_656
B
ASN
108
B
ASN
88
14
2_656
B
PHE
110
B
PHE
90
14
2_656
B
GLN
122
B
GLN
102
14
2_656
B
PG4
206
T
PG4
14
2_656
B
PG4
206
T
PG4
14
1_555
A
HIS
84
A
HIS
64
8
1_555
B
HIS
84
B
HIS
64
8
1_555
B
HIS
84
B
HIS
64
8
2_656
B
7PG
205
S
7PG
8
1_555
B
7PG
205
S
7PG
8
2_656
B
NA
212
Z
NA
8
1_555
B
NA
212
Z
NA
8
2_656
B
HOH
322
BA
HOH
8
2_656
B
ASN
74
B
ASN
54
1
1_555
B
ASN
83
B
ASN
63
1
1_555
B
VAL
82
B
VAL
62
4
1_555
B
HOH
348
BA
HOH
4
1_555
B
HOH
363
BA
HOH
4
1_555
B
HOH
381
BA
HOH
4
1_555
A
PGE
206
H
PGE
1
2_656
B
VAL
24
B
VAL
4
2
1_555
B
TYR
118
B
TYR
98
2
1_555
B
PG4
206
T
PG4
2
2_656
B
PG4
206
T
PG4
2
1_555
5
C 1 2 1