0.009248 0.000000 0.005703 0.000000 0.026948 0.000000 0.000000 0.000000 0.019142 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 121.66 90.00 108.136 37.109 61.376 C17 H36 O9 384.462 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O3 S 137.158 n S-HYDROXYCYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking I -1 126.904 IODIDE ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C8 H18 O5 194.226 TETRAETHYLENE GLYCOL non-polymer C6 H14 O4 150.173 TRIETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a hypothetical protein (BACUNI_04292) from Bacteroides uniformis ATCC 8492 at 1.27 A resolution 10.2210/pdb4q53/pdb pdb_00004q53 100 1 1 FLAT MIRROR (VERTICAL FOCUSING), SINGLE CRYSTAL SI(111) BENT MONOCHROMATOR (HORIZONTAL FOCUSING) PIXEL 2013-11-25 DECTRIS PILATUS 6M SINGLE CRYSTAL SI(111) BENT SINGLE WAVELENGTH M x-ray 1 0.97882 1.0 BL11-1 SSRL 0.97882 SYNCHROTRON SSRL BEAMLINE BL11-1 12458.679 Uncharacterized protein UNP residues 22-130 2 man polymer 126.904 IODIDE ION 9 syn non-polymer 150.173 TRIETHYLENE GLYCOL 2 syn non-polymer 35.453 CHLORIDE ION 9 syn non-polymer 62.068 1,2-ETHANEDIOL 1 syn non-polymer 384.462 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL 1 syn non-polymer 194.226 TETRAETHYLENE GLYCOL 1 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 184 nat water no yes GQNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHADKRTAEGT(MSE)AAFFSNHKVGSFNVNHQGKRDESGFVIG IL(MSE)TANGNFRVN(CSO)FFRKVQNKYVIHQIRIDKTDE GQNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHADKRTAEGTMAAFFSNHKVGSFNVNHQGKRDESGFVIGILMT ANGNFRVNCFFRKVQNKYVIHQIRIDKTDE A,B JCSG-417916 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 8492 BACUNI_04292 411479 Bacteroides uniformis 562 Escherichia coli PB1 Plasmid SpeedE5T 1 2.10 41.52 VAPOR DIFFUSION, SITTING DROP 0.07M Sodium Iodide, 30.00% polyethylene glycol 3350, 0.01M ferric(III) chloride, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI:Biology software database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Structure summary Refinement description Database references Derived calculations 1 0 2014-07-16 1 1 2014-12-24 1 2 2017-11-22 1 3 2023-02-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2014-04-15 REL REL IOD IODIDE ION PGE TRIETHYLENE GLYCOL CL CHLORIDE ION EDO 1,2-ETHANEDIOL 7PG 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL PG4 TETRAETHYLENE GLYCOL NA SODIUM ION HOH water THE CONSTRUCT (RESIDUES 21-130) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. IOD 132 2 IOD IOD 201 A IOD 133 2 IOD IOD 202 A IOD 135 2 IOD IOD 203 A IOD 136 2 IOD IOD 204 A IOD 139 2 IOD IOD 205 A PGE 142 3 PGE PGE 206 A PGE 143 3 PGE PGE 207 A CL 146 4 CL CL 208 A CL 148 4 CL CL 209 A CL 149 4 CL CL 210 A CL 152 4 CL CL 211 A EDO 154 5 EDO EDO 212 A IOD 131 2 IOD IOD 201 B IOD 134 2 IOD IOD 202 B IOD 137 2 IOD IOD 203 B IOD 138 2 IOD IOD 204 B 7PG 140 6 7PG 7PG 205 B PG4 141 7 PG4 PG4 206 B CL 144 4 CL CL 207 B CL 145 4 CL CL 208 B CL 147 4 CL CL 209 B CL 150 4 CL CL 210 B CL 151 4 CL CL 211 B NA 153 8 NA NA 212 B HOH 155 9 HOH HOH 301 A HOH 156 9 HOH HOH 302 A HOH 159 9 HOH HOH 303 A HOH 162 9 HOH HOH 304 A HOH 166 9 HOH HOH 305 A HOH 170 9 HOH HOH 306 A HOH 173 9 HOH HOH 307 A HOH 174 9 HOH HOH 308 A HOH 175 9 HOH HOH 309 A HOH 176 9 HOH HOH 310 A HOH 177 9 HOH HOH 311 A HOH 178 9 HOH HOH 312 A HOH 179 9 HOH HOH 313 A HOH 180 9 HOH HOH 314 A HOH 181 9 HOH HOH 315 A HOH 195 9 HOH HOH 316 A HOH 199 9 HOH HOH 317 A HOH 200 9 HOH HOH 318 A HOH 203 9 HOH HOH 319 A HOH 204 9 HOH HOH 320 A HOH 212 9 HOH HOH 321 A HOH 214 9 HOH HOH 322 A HOH 215 9 HOH HOH 323 A HOH 216 9 HOH HOH 324 A HOH 217 9 HOH HOH 325 A HOH 218 9 HOH HOH 326 A HOH 219 9 HOH HOH 327 A HOH 226 9 HOH HOH 328 A HOH 227 9 HOH HOH 329 A HOH 228 9 HOH HOH 330 A HOH 229 9 HOH HOH 331 A HOH 230 9 HOH HOH 332 A HOH 232 9 HOH HOH 333 A HOH 233 9 HOH HOH 334 A HOH 234 9 HOH HOH 335 A HOH 235 9 HOH HOH 336 A HOH 236 9 HOH HOH 337 A HOH 237 9 HOH HOH 338 A HOH 238 9 HOH HOH 339 A HOH 239 9 HOH HOH 340 A HOH 240 9 HOH HOH 341 A HOH 241 9 HOH HOH 342 A HOH 242 9 HOH HOH 343 A HOH 243 9 HOH HOH 344 A HOH 255 9 HOH HOH 345 A HOH 257 9 HOH HOH 346 A HOH 258 9 HOH HOH 347 A HOH 267 9 HOH HOH 348 A HOH 268 9 HOH HOH 349 A HOH 269 9 HOH HOH 350 A HOH 272 9 HOH HOH 351 A HOH 273 9 HOH HOH 352 A HOH 274 9 HOH HOH 353 A HOH 275 9 HOH HOH 354 A HOH 277 9 HOH HOH 355 A HOH 279 9 HOH HOH 356 A HOH 280 9 HOH HOH 357 A HOH 281 9 HOH HOH 358 A HOH 285 9 HOH HOH 359 A HOH 287 9 HOH HOH 360 A HOH 288 9 HOH HOH 361 A HOH 289 9 HOH HOH 362 A HOH 290 9 HOH HOH 363 A HOH 291 9 HOH HOH 364 A HOH 300 9 HOH HOH 365 A HOH 303 9 HOH HOH 366 A HOH 304 9 HOH HOH 367 A HOH 305 9 HOH HOH 368 A HOH 306 9 HOH HOH 369 A HOH 307 9 HOH HOH 370 A HOH 308 9 HOH HOH 371 A HOH 309 9 HOH HOH 372 A HOH 310 9 HOH HOH 373 A HOH 316 9 HOH HOH 374 A HOH 323 9 HOH HOH 375 A HOH 325 9 HOH HOH 376 A HOH 326 9 HOH HOH 377 A HOH 327 9 HOH HOH 378 A HOH 328 9 HOH HOH 379 A HOH 329 9 HOH HOH 380 A HOH 330 9 HOH HOH 381 A HOH 331 9 HOH HOH 382 A HOH 332 9 HOH HOH 383 A HOH 333 9 HOH HOH 384 A HOH 334 9 HOH HOH 385 A HOH 335 9 HOH HOH 386 A HOH 336 9 HOH HOH 387 A HOH 157 9 HOH HOH 301 B HOH 158 9 HOH HOH 302 B HOH 160 9 HOH HOH 303 B HOH 161 9 HOH HOH 304 B HOH 163 9 HOH HOH 305 B HOH 164 9 HOH HOH 306 B HOH 165 9 HOH HOH 307 B HOH 167 9 HOH HOH 308 B HOH 168 9 HOH HOH 309 B HOH 169 9 HOH HOH 310 B HOH 171 9 HOH HOH 311 B HOH 172 9 HOH HOH 312 B HOH 182 9 HOH HOH 313 B HOH 183 9 HOH HOH 314 B HOH 184 9 HOH HOH 315 B HOH 185 9 HOH HOH 316 B HOH 186 9 HOH HOH 317 B HOH 187 9 HOH HOH 318 B HOH 188 9 HOH HOH 319 B HOH 189 9 HOH HOH 320 B HOH 190 9 HOH HOH 321 B HOH 191 9 HOH HOH 322 B HOH 192 9 HOH HOH 323 B HOH 193 9 HOH HOH 324 B HOH 194 9 HOH HOH 325 B HOH 196 9 HOH HOH 326 B HOH 197 9 HOH HOH 327 B HOH 198 9 HOH HOH 328 B HOH 201 9 HOH HOH 329 B HOH 202 9 HOH HOH 330 B HOH 205 9 HOH HOH 331 B HOH 206 9 HOH HOH 332 B HOH 207 9 HOH HOH 333 B HOH 208 9 HOH HOH 334 B HOH 209 9 HOH HOH 335 B HOH 210 9 HOH HOH 336 B HOH 211 9 HOH HOH 337 B HOH 213 9 HOH HOH 338 B HOH 220 9 HOH HOH 339 B HOH 221 9 HOH HOH 340 B HOH 222 9 HOH HOH 341 B HOH 223 9 HOH HOH 342 B HOH 224 9 HOH HOH 343 B HOH 225 9 HOH HOH 344 B HOH 231 9 HOH HOH 345 B HOH 244 9 HOH HOH 346 B HOH 245 9 HOH HOH 347 B HOH 246 9 HOH HOH 348 B HOH 247 9 HOH HOH 349 B HOH 248 9 HOH HOH 350 B HOH 249 9 HOH HOH 351 B HOH 250 9 HOH HOH 352 B HOH 251 9 HOH HOH 353 B HOH 252 9 HOH HOH 354 B HOH 253 9 HOH HOH 355 B HOH 254 9 HOH HOH 356 B HOH 256 9 HOH HOH 357 B HOH 259 9 HOH HOH 358 B HOH 260 9 HOH HOH 359 B HOH 261 9 HOH HOH 360 B HOH 262 9 HOH HOH 361 B HOH 263 9 HOH HOH 362 B HOH 264 9 HOH HOH 363 B HOH 265 9 HOH HOH 364 B HOH 266 9 HOH HOH 365 B HOH 270 9 HOH HOH 366 B HOH 271 9 HOH HOH 367 B HOH 276 9 HOH HOH 368 B HOH 278 9 HOH HOH 369 B HOH 282 9 HOH HOH 370 B HOH 283 9 HOH HOH 371 B HOH 284 9 HOH HOH 372 B HOH 286 9 HOH HOH 373 B HOH 292 9 HOH HOH 374 B HOH 293 9 HOH HOH 375 B HOH 294 9 HOH HOH 376 B HOH 295 9 HOH HOH 377 B HOH 296 9 HOH HOH 378 B HOH 297 9 HOH HOH 379 B HOH 298 9 HOH HOH 380 B HOH 299 9 HOH HOH 381 B HOH 301 9 HOH HOH 382 B HOH 302 9 HOH HOH 383 B HOH 311 9 HOH HOH 384 B HOH 312 9 HOH HOH 385 B HOH 313 9 HOH HOH 386 B HOH 314 9 HOH HOH 387 B HOH 315 9 HOH HOH 388 B HOH 317 9 HOH HOH 389 B HOH 318 9 HOH HOH 390 B HOH 319 9 HOH HOH 391 B HOH 320 9 HOH HOH 392 B HOH 321 9 HOH HOH 393 B HOH 322 9 HOH HOH 394 B HOH 324 9 HOH HOH 395 B HOH 337 9 HOH HOH 396 B HOH 338 9 HOH HOH 397 B n 1 0 A n 2 22 A ASN 23 n 3 ASN 23 A VAL 24 n 4 VAL 24 A PRO 25 n 5 PRO 25 A GLU 26 n 6 GLU 26 A GLY 27 n 7 GLY 27 A VAL 28 n 8 VAL 28 A ILE 29 n 9 ILE 29 A GLY 30 n 10 GLY 30 A ALA 31 n 11 ALA 31 A PHE 32 n 12 PHE 32 A LYS 33 n 13 LYS 33 A GLU 34 n 14 GLU 34 A GLY 35 n 15 GLY 35 A ASN 36 n 16 ASN 36 A SER 37 n 17 SER 37 A GLN 38 n 18 GLN 38 A GLU 39 n 19 GLU 39 A LEU 40 n 20 LEU 40 A ASN 41 n 21 ASN 41 A LYS 42 n 22 LYS 42 A TYR 43 n 23 TYR 43 A LEU 44 n 24 LEU 44 A GLY 45 n 25 GLY 45 A ASP 46 n 26 ASP 46 A LYS 47 n 27 LYS 47 A VAL 48 n 28 VAL 48 A ASP 49 n 29 ASP 49 A LEU 50 n 30 LEU 50 A ILE 51 n 31 ILE 51 A ILE 52 n 32 ILE 52 A GLN 53 n 33 GLN 53 A ASN 54 n 34 ASN 54 A LYS 55 n 35 LYS 55 A SER 56 n 36 SER 56 A THR 57 n 37 THR 57 A HIS 58 n 38 HIS 58 A ALA 59 n 39 ALA 59 A ASP 60 n 40 ASP 60 A LYS 61 n 41 LYS 61 A ARG 62 n 42 ARG 62 A THR 63 n 43 THR 63 A ALA 64 n 44 ALA 64 A GLU 65 n 45 GLU 65 A GLY 66 n 46 GLY 66 A THR 67 n 47 THR 67 A MSE 68 n 48 MSE 68 A ALA 69 n 49 ALA 69 A ALA 70 n 50 ALA 70 A PHE 71 n 51 PHE 71 A PHE 72 n 52 PHE 72 A SER 73 n 53 SER 73 A ASN 74 n 54 ASN 74 A HIS 75 n 55 HIS 75 A LYS 76 n 56 LYS 76 A VAL 77 n 57 VAL 77 A GLY 78 n 58 GLY 78 A SER 79 n 59 SER 79 A PHE 80 n 60 PHE 80 A ASN 81 n 61 ASN 81 A VAL 82 n 62 VAL 82 A ASN 83 n 63 ASN 83 A HIS 84 n 64 HIS 84 A GLN 85 n 65 GLN 85 A GLY 86 n 66 GLY 86 A LYS 87 n 67 LYS 87 A ARG 88 n 68 ARG 88 A ASP 89 n 69 ASP 89 A GLU 90 n 70 GLU 90 A SER 91 n 71 SER 91 A GLY 92 n 72 GLY 92 A PHE 93 n 73 PHE 93 A VAL 94 n 74 VAL 94 A ILE 95 n 75 ILE 95 A GLY 96 n 76 GLY 96 A ILE 97 n 77 ILE 97 A LEU 98 n 78 LEU 98 A MSE 99 n 79 MSE 99 A THR 100 n 80 THR 100 A ALA 101 n 81 ALA 101 A ASN 102 n 82 ASN 102 A GLY 103 n 83 GLY 103 A ASN 104 n 84 ASN 104 A PHE 105 n 85 PHE 105 A ARG 106 n 86 ARG 106 A VAL 107 n 87 VAL 107 A ASN 108 n 88 ASN 108 A CSO 109 n 89 CSO 109 A PHE 110 n 90 PHE 110 A PHE 111 n 91 PHE 111 A ARG 112 n 92 ARG 112 A LYS 113 n 93 LYS 113 A VAL 114 n 94 VAL 114 A GLN 115 n 95 GLN 115 A ASN 116 n 96 ASN 116 A LYS 117 n 97 LYS 117 A TYR 118 n 98 TYR 118 A VAL 119 n 99 VAL 119 A ILE 120 n 100 ILE 120 A HIS 121 n 101 HIS 121 A GLN 122 n 102 GLN 122 A ILE 123 n 103 ILE 123 A ARG 124 n 104 ARG 124 A ILE 125 n 105 ILE 125 A ASP 126 n 106 ASP 126 A LYS 127 n 107 LYS 127 A THR 128 n 108 THR 128 A ASP 129 n 109 ASP 129 A GLU 130 n 110 GLU 130 A GLY 21 n 1 GLY 0 B GLN 22 n 2 GLN 22 B ASN 23 n 3 ASN 23 B VAL 24 n 4 VAL 24 B PRO 25 n 5 PRO 25 B GLU 26 n 6 GLU 26 B GLY 27 n 7 GLY 27 B VAL 28 n 8 VAL 28 B ILE 29 n 9 ILE 29 B GLY 30 n 10 GLY 30 B ALA 31 n 11 ALA 31 B PHE 32 n 12 PHE 32 B LYS 33 n 13 LYS 33 B GLU 34 n 14 GLU 34 B GLY 35 n 15 GLY 35 B ASN 36 n 16 ASN 36 B SER 37 n 17 SER 37 B GLN 38 n 18 GLN 38 B GLU 39 n 19 GLU 39 B LEU 40 n 20 LEU 40 B ASN 41 n 21 ASN 41 B LYS 42 n 22 LYS 42 B TYR 43 n 23 TYR 43 B LEU 44 n 24 LEU 44 B GLY 45 n 25 GLY 45 B ASP 46 n 26 ASP 46 B LYS 47 n 27 LYS 47 B VAL 48 n 28 VAL 48 B ASP 49 n 29 ASP 49 B LEU 50 n 30 LEU 50 B ILE 51 n 31 ILE 51 B ILE 52 n 32 ILE 52 B GLN 53 n 33 GLN 53 B ASN 54 n 34 ASN 54 B LYS 55 n 35 LYS 55 B SER 56 n 36 SER 56 B THR 57 n 37 THR 57 B HIS 58 n 38 HIS 58 B ALA 59 n 39 ALA 59 B ASP 60 n 40 ASP 60 B LYS 61 n 41 LYS 61 B ARG 62 n 42 ARG 62 B THR 63 n 43 THR 63 B ALA 64 n 44 ALA 64 B GLU 65 n 45 GLU 65 B GLY 66 n 46 GLY 66 B THR 67 n 47 THR 67 B MSE 68 n 48 MSE 68 B ALA 69 n 49 ALA 69 B ALA 70 n 50 ALA 70 B PHE 71 n 51 PHE 71 B PHE 72 n 52 PHE 72 B SER 73 n 53 SER 73 B ASN 74 n 54 ASN 74 B HIS 75 n 55 HIS 75 B LYS 76 n 56 LYS 76 B VAL 77 n 57 VAL 77 B GLY 78 n 58 GLY 78 B SER 79 n 59 SER 79 B PHE 80 n 60 PHE 80 B ASN 81 n 61 ASN 81 B VAL 82 n 62 VAL 82 B ASN 83 n 63 ASN 83 B HIS 84 n 64 HIS 84 B GLN 85 n 65 GLN 85 B GLY 86 n 66 GLY 86 B LYS 87 n 67 LYS 87 B ARG 88 n 68 ARG 88 B ASP 89 n 69 ASP 89 B GLU 90 n 70 GLU 90 B SER 91 n 71 SER 91 B GLY 92 n 72 GLY 92 B PHE 93 n 73 PHE 93 B VAL 94 n 74 VAL 94 B ILE 95 n 75 ILE 95 B GLY 96 n 76 GLY 96 B ILE 97 n 77 ILE 97 B LEU 98 n 78 LEU 98 B MSE 99 n 79 MSE 99 B THR 100 n 80 THR 100 B ALA 101 n 81 ALA 101 B ASN 102 n 82 ASN 102 B GLY 103 n 83 GLY 103 B ASN 104 n 84 ASN 104 B PHE 105 n 85 PHE 105 B ARG 106 n 86 ARG 106 B VAL 107 n 87 VAL 107 B ASN 108 n 88 ASN 108 B CSO 109 n 89 CSO 109 B PHE 110 n 90 PHE 110 B PHE 111 n 91 PHE 111 B ARG 112 n 92 ARG 112 B LYS 113 n 93 LYS 113 B VAL 114 n 94 VAL 114 B GLN 115 n 95 GLN 115 B ASN 116 n 96 ASN 116 B LYS 117 n 97 LYS 117 B TYR 118 n 98 TYR 118 B VAL 119 n 99 VAL 119 B ILE 120 n 100 ILE 120 B HIS 121 n 101 HIS 121 B GLN 122 n 102 GLN 122 B ILE 123 n 103 ILE 123 B ARG 124 n 104 ARG 124 B ILE 125 n 105 ILE 125 B ASP 126 n 106 ASP 126 B LYS 127 n 107 LYS 127 B THR 128 n 108 THR 128 B ASP 129 n 109 ASP 129 B n 110 130 B author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric B PG4 206 T O5 PG4 1_555 B NA 212 Z NA NA 1_555 B PG4 206 T O4 PG4 1_555 62.2 A MSE 68 SELENOMETHIONINE A MSE 48 MET A MSE 99 SELENOMETHIONINE A MSE 79 MET A CSO 109 S-HYDROXYCYSTEINE A CSO 89 CYS B MSE 68 SELENOMETHIONINE B MSE 48 MET B MSE 99 SELENOMETHIONINE B MSE 79 MET B CSO 109 S-HYDROXYCYSTEINE B CSO 89 CYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O THR 57 A O THR 37 A N LEU 50 A N LEU 30 A N ILE 51 A N ILE 31 A O ILE 125 A O ILE 105 A O ASP 126 A O ASP 106 A N ARG 106 A N ARG 86 A O PHE 105 A O PHE 85 A N LEU 98 A N LEU 78 A O MSE 99 A O MSE 79 A N GLY 78 A N GLY 58 B O LYS 55 B O LYS 35 B N ILE 52 B N ILE 32 B N ASP 49 B N ASP 29 B O HIS 121 B O HIS 101 B O LYS 117 B O LYS 97 B N VAL 114 B N VAL 94 B O PHE 105 B O PHE 85 B N LEU 98 B N LEU 78 B O MSE 99 B O MSE 79 B N GLY 78 B N GLY 58 1 B NA 212 Z NA 1 A CD ARG 88 A CD ARG 68 1 Y 1 A NE ARG 88 A NE ARG 68 1 Y 1 A CZ ARG 88 A CZ ARG 68 1 Y 1 A NH1 ARG 88 A NH1 ARG 68 1 Y 1 A NH2 ARG 88 A NH2 ARG 68 1 Y 1 A CG ASN 116 A CG ASN 96 1 Y 1 A OD1 ASN 116 A OD1 ASN 96 1 Y 1 A ND2 ASN 116 A ND2 ASN 96 1 Y 1 B CE LYS 113 B CE LYS 93 1 Y 1 B NZ LYS 113 B NZ LYS 93 1 Y 1 B CG ASN 116 B CG ASN 96 1 Y 1 B OD1 ASN 116 B OD1 ASN 96 1 Y 1 B ND2 ASN 116 B ND2 ASN 96 1 Y 1 A GLY 0 A GLY 1 1 Y 1 A GLN 22 A GLN 2 1 Y 1 B GLU 130 B GLU 110 1 Y 1 A ASN 41 11.56 1 A ASN 41 11.35 1 B ASP 89 52.11 -121.01 20.42 1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 3. IODIDES (IOD) FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE. THE MODELING OF IODIDE IS SUPPORTED BY ANOMALOUS DIFFERENCE MAPS. 4. POLYETHYLENE GLYCOL FRAGMENTS (7PE,PEG, AND PG4) FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE. 5. SODIUM (NA) AND CHLORIDE (CL) FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE. 1,2- ETHANEDIOL (EDO), USED AS A CRYOPROTECTANT, HAS ALSO BEEN MODELED INTO THE STRUCTURE. 5. HYDROGENS HAVE BEEN ADDED AT THE RIDING POSITIONS. 6. ELECTRON DENSITY INDICATES THAT CYS 109 ON THE TWO SUBUNITS IN THE ASYMMETRIC UNIT ARE OXIDIZED; THEREFORE, THESE RESIDUES WERE MODELED AS S-HYDROXYCYSTEINE (CSO). 0.176 0.154 0.155 1.27 28.00 2753 53907 5.110 98.1 1.000 0.200 0.090 1 SAD 14.200 MLHL FLAT BULK SOLVENT MODEL 1.27 28.00 184 1970 82 0 1704 0.011 2084 1.725 2813 18.421 865 0.079 293 0.010 372 0.1966 0.1547 1.2919 145 2514 98.00 0.2037 0.1416 1.3154 131 2578 99.00 0.1839 0.1329 1.3407 131 2506 98.00 0.1633 0.1276 1.3681 149 2558 98.00 0.1528 0.1214 1.3978 131 2560 99.00 0.1821 0.1147 1.4303 119 2585 98.00 0.1803 0.1142 1.4661 129 2587 99.00 0.1472 0.1039 1.5057 151 2552 99.00 0.1295 0.1020 1.5500 124 2543 98.00 0.1483 0.1049 1.6000 138 2515 98.00 0.1528 0.1102 1.6572 149 2579 99.00 0.1528 0.1150 1.7236 141 2574 99.00 0.1809 0.1236 1.8020 165 2571 99.00 0.1500 0.1276 1.8970 154 2542 99.00 0.1759 0.1278 2.0158 130 2487 96.00 0.1636 0.1348 2.1714 129 2622 99.00 0.1685 0.1478 2.3898 164 2556 99.00 0.1867 0.1616 2.7353 121 2552 96.00 0.1952 0.1768 3.4450 131 2534 96.00 0.1883 0.2033 26.9079 121 2639 96.00 14.53 1.270 28.002 4Q53 53919 -3.000 1 97.0 0.38500 1.27 1.32 2.600 1 97.7 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package phasing Eric de La Fortelle sharp-develop@globalphasing.com http://www.globalphasing.com/sharp/ SHARP package data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package refinement P.D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.8.4 data reduction XDS phasing SHELXD Y Crystal structure of a DUF4783 family protein (BACUNI_04292) from Bacteroides uniformis ATCC 8492 at 1.27 A resolution 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N 5 N N 2 N N 2 N N 2 N N 2 N N 6 N N 7 N N 4 N N 4 N N 4 N N 4 N N 4 N N 8 N N 9 N N 9 N N A PRO 25 A PRO 5 HELX_P A GLY 35 A GLY 15 1 1 11 A ASN 36 A ASN 16 HELX_P A ASN 41 A ASN 21 1 2 6 A LYS 61 A LYS 41 HELX_P A HIS 75 A HIS 55 1 3 15 B PRO 25 B PRO 5 HELX_P B GLY 35 B GLY 15 1 4 11 B ASN 36 B ASN 16 HELX_P B LYS 42 B LYS 22 1 5 7 B LYS 61 B LYS 41 HELX_P B HIS 75 B HIS 55 1 6 15 covale 1.327 both A THR 67 A C THR 47 1_555 A MSE 68 A N MSE 48 1_555 covale 1.335 both A MSE 68 A C MSE 48 1_555 A ALA 69 A N ALA 49 1_555 covale 1.332 both A LEU 98 A C LEU 78 1_555 A MSE 99 A N MSE 79 1_555 covale 1.330 both A MSE 99 A C MSE 79 1_555 A THR 100 A N THR 80 1_555 covale 1.324 both A ASN 108 A C ASN 88 1_555 A CSO 109 A N CSO 89 1_555 covale 1.328 both A CSO 109 A C CSO 89 1_555 A PHE 110 A N PHE 90 1_555 covale 1.334 both B THR 67 B C THR 47 1_555 B MSE 68 B N MSE 48 1_555 covale 1.339 both B MSE 68 B C MSE 48 1_555 B ALA 69 B N ALA 49 1_555 covale 1.326 both A B LEU 98 B C LEU 78 1_555 B MSE 99 B N MSE 79 1_555 covale 1.328 both B B LEU 98 B C LEU 78 1_555 B MSE 99 B N MSE 79 1_555 covale 1.325 both A B MSE 99 B C MSE 79 1_555 B THR 100 B N THR 80 1_555 covale 1.332 both B B MSE 99 B C MSE 79 1_555 B THR 100 B N THR 80 1_555 covale 1.319 both B ASN 108 B C ASN 88 1_555 B CSO 109 B N CSO 89 1_555 covale 1.323 both B CSO 109 B C CSO 89 1_555 B PHE 110 B N PHE 90 1_555 metalc 2.763 B PG4 206 T O5 PG4 1_555 B NA 212 Z NA NA 1_555 metalc 2.984 B PG4 206 T O4 PG4 1_555 B NA 212 Z NA NA 1_555 STRUCTURAL GENOMICS, UNKNOWN FUNCTION Cystatin-like fold, DUF4783, PF16022 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION A VAL 24 A VAL 4 1 A PRO 25 A PRO 5 8.91 B VAL 24 B VAL 4 1 B PRO 25 B PRO 5 9.21 A7V9L7_BACUN UNP 1 22 A7V9L7 QNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHADKRTAEGTMAAFFSNHKVGSFNVNHQGKRDESGFVIGILMTA NGNFRVNCFFRKVQNKYVIHQIRIDKTDE 22 130 4Q53 22 130 A7V9L7 A 1 2 110 22 130 4Q53 22 130 A7V9L7 B 1 2 110 1 expression tag GLY 0 4Q53 A A7V9L7 UNP 1 2 expression tag GLY 0 4Q53 B A7V9L7 UNP 1 6 6 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A LYS 55 A LYS 35 A ASP 60 A ASP 40 A LEU 44 A LEU 24 A ILE 52 A ILE 32 A LYS 117 A LYS 97 A LYS 127 A LYS 107 A GLY 103 A GLY 83 A VAL 114 A VAL 94 A SER 91 A SER 71 A THR 100 A THR 80 A VAL 77 A VAL 57 A LYS 87 A LYS 67 B LYS 55 B LYS 35 B ASP 60 B ASP 40 B LEU 44 B LEU 24 B ILE 52 B ILE 32 B LYS 117 B LYS 97 B LYS 127 B LYS 107 B GLY 103 B GLY 83 B VAL 114 B VAL 94 B SER 91 B SER 71 B THR 100 B THR 80 B VAL 77 B VAL 57 B ARG 88 B ARG 68 BINDING SITE FOR RESIDUE IOD A 201 A IOD 201 Software 3 BINDING SITE FOR RESIDUE IOD A 202 A IOD 202 Software 2 BINDING SITE FOR RESIDUE IOD A 203 A IOD 203 Software 3 BINDING SITE FOR RESIDUE IOD A 204 A IOD 204 Software 3 BINDING SITE FOR RESIDUE IOD A 205 A IOD 205 Software 4 BINDING SITE FOR RESIDUE PGE A 206 A PGE 206 Software 8 BINDING SITE FOR RESIDUE PGE A 207 A PGE 207 Software 7 BINDING SITE FOR RESIDUE CL A 208 A CL 208 Software 2 BINDING SITE FOR RESIDUE CL A 209 A CL 209 Software 4 BINDING SITE FOR RESIDUE CL A 210 A CL 210 Software 3 BINDING SITE FOR RESIDUE CL A 211 A CL 211 Software 1 BINDING SITE FOR RESIDUE EDO A 212 A EDO 212 Software 5 BINDING SITE FOR RESIDUE IOD B 201 B IOD 201 Software 2 BINDING SITE FOR RESIDUE IOD B 202 B IOD 202 Software 2 BINDING SITE FOR RESIDUE IOD B 203 B IOD 203 Software 3 BINDING SITE FOR RESIDUE IOD B 204 B IOD 204 Software 2 BINDING SITE FOR RESIDUE 7PG B 205 B 7PG 205 Software 14 BINDING SITE FOR RESIDUE PG4 B 206 B PG4 206 Software 8 BINDING SITE FOR RESIDUE CL B 207 B CL 207 Software 1 BINDING SITE FOR RESIDUE CL B 208 B CL 208 Software 1 BINDING SITE FOR RESIDUE CL B 209 B CL 209 Software 4 BINDING SITE FOR RESIDUE CL B 210 B CL 210 Software 1 BINDING SITE FOR RESIDUE CL B 211 B CL 211 Software 2 BINDING SITE FOR RESIDUE NA B 212 B NA 212 Software 2 A ASN 83 A ASN 63 3 1_555 A ILE 97 A ILE 77 3 1_555 A ARG 106 A ARG 86 3 1_555 A VAL 24 A VAL 4 2 1_555 A IOD 205 G IOD 2 1_555 A GLN 85 A GLN 65 3 1_555 A LYS 87 A LYS 67 3 1_555 A IOD 205 G IOD 3 1_555 B GLN 85 B GLN 65 3 2_656 B LYS 87 B LYS 67 3 2_656 B IOD 202 P IOD 3 2_656 A GLY 86 A GLY 66 4 1_555 A LYS 87 A LYS 67 4 1_555 A IOD 202 D IOD 4 1_555 A IOD 203 E IOD 4 1_555 A ARG 88 A ARG 68 8 1_555 A SER 91 A SER 71 8 1_555 A GLY 92 A GLY 72 8 1_555 A PHE 93 A PHE 73 8 1_555 A PHE 110 A PHE 90 8 1_555 A PHE 111 A PHE 91 8 1_555 A ARG 112 A ARG 92 8 1_555 B CL 210 X CL 8 2_656 A ARG 106 A ARG 86 7 1_555 A PHE 110 A PHE 90 7 1_555 A HOH 321 AA HOH 7 1_555 B ARG 106 B ARG 86 7 1_555 B ARG 124 B ARG 104 7 1_555 B ASP 126 B ASP 106 7 1_555 B 7PG 205 S 7PG 7 2_656 A ASN 74 A ASN 54 2 1_555 A HOH 306 AA HOH 2 1_555 A VAL 82 A VAL 62 4 1_555 A CL 210 L CL 4 1_555 A HOH 325 AA HOH 4 1_555 A HOH 353 AA HOH 4 1_555 A LYS 33 A LYS 13 3 1_555 A ASN 81 A ASN 61 3 1_555 A CL 209 K CL 3 1_555 A THR 63 A THR 43 1 1_555 A LYS 55 A LYS 35 5 4_545 A ASP 129 A ASP 109 5 1_555 B LYS 47 B LYS 27 5 1_555 B ALA 59 B ALA 39 5 1_555 B ASP 60 B ASP 40 5 1_555 B IOD 204 R IOD 2 1_555 B IOD 204 R IOD 2 2_656 A IOD 204 F IOD 2 2_656 B GLY 86 B GLY 66 2 1_555 A HOH 321 AA HOH 3 1_555 B ASN 108 B ASN 88 3 1_555 B GLN 122 B GLN 102 3 1_555 B IOD 201 O IOD 2 2_656 B IOD 201 O IOD 2 1_555 A ASN 83 A ASN 63 14 2_656 A HIS 84 A HIS 64 14 2_656 A PHE 93 A PHE 73 14 2_656 A ARG 106 A ARG 86 14 2_656 A PGE 207 I PGE 14 2_656 B LYS 87 B LYS 67 14 1_555 B ARG 88 B ARG 68 14 1_555 B PHE 93 B PHE 73 14 2_656 B ARG 106 B ARG 86 14 2_656 B ASN 108 B ASN 88 14 2_656 B PHE 110 B PHE 90 14 2_656 B GLN 122 B GLN 102 14 2_656 B PG4 206 T PG4 14 2_656 B PG4 206 T PG4 14 1_555 A HIS 84 A HIS 64 8 1_555 B HIS 84 B HIS 64 8 1_555 B HIS 84 B HIS 64 8 2_656 B 7PG 205 S 7PG 8 1_555 B 7PG 205 S 7PG 8 2_656 B NA 212 Z NA 8 1_555 B NA 212 Z NA 8 2_656 B HOH 322 BA HOH 8 2_656 B ASN 74 B ASN 54 1 1_555 B ASN 83 B ASN 63 1 1_555 B VAL 82 B VAL 62 4 1_555 B HOH 348 BA HOH 4 1_555 B HOH 363 BA HOH 4 1_555 B HOH 381 BA HOH 4 1_555 A PGE 206 H PGE 1 2_656 B VAL 24 B VAL 4 2 1_555 B TYR 118 B TYR 98 2 1_555 B PG4 206 T PG4 2 2_656 B PG4 206 T PG4 2 1_555 5 C 1 2 1