0.034072
0.000000
0.000000
0.000000
0.026364
0.000000
0.000000
0.000000
0.010143
0.00000
0.00000
0.00000
King, D.T.
Strynadka, N.C.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
29.350
37.930
98.590
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
289
19245
19253
10.1074/jbc.M114.565879
24808177
Structural Insights into the Lipoprotein Outer Membrane Regulator of Penicillin-binding Protein 1B.
2014
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2012-06-01
RAYONIX MX300HE
KOHZU double crystal monochromator (DCM)
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
08B1-1
CLSI
0.9795
SYNCHROTRON
CLSI BEAMLINE 08B1-1
14594.638
Penicillin-binding protein activator LpoB
LpoB C-terminal domain
1
man
polymer
18.015
water
27
nat
water
PBP activator LpoB
no
yes
YDWNGA(MSE)QPLVSK(MSE)LQADGVTAGSVLLVDSVNNRTNGSLNANEATETLRNALANNGKFTLVSVQQLS(MSE)
AKQQLGLSPQDSLGTRSKAIGIARNVGAQYVLYSSASGNVNAPALQ(MSE)QL(MSE)LVQTGEIIWSGKGAVQQQ
YDWNGAMQPLVSKMLQADGVTAGSVLLVDSVNNRTNGSLNANEATETLRNALANNGKFTLVSVQQLSMAKQQLGLSPQDS
LGTRSKAIGIARNVGAQYVLYSSASGNVNAPALQMQLMLVQTGEIIWSGKGAVQQQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
LT2 / SGSC1412 / ATCC 700720
sample
lpoB, STM1207
99287
Salmonella enterica subsp. enterica serovar Typhimurium
562
Escherichia coli
1
1.88
34.58
VAPOR DIFFUSION, SITTING DROP
4.6
0.1M NaAc pH4.6, 2M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 298.15K
298.15
repository
Initial release
Database references
Database references
1
0
2014-05-14
1
1
2014-07-02
1
2
2014-07-23
RCSB
Y
RCSB
2014-04-23
REL
REL
HOH
water
HOH
1
2
HOH
HOH
301
A
HOH
2
2
HOH
HOH
302
A
HOH
3
2
HOH
HOH
303
A
HOH
4
2
HOH
HOH
304
A
HOH
5
2
HOH
HOH
305
A
HOH
6
2
HOH
HOH
306
A
HOH
7
2
HOH
HOH
307
A
HOH
9
2
HOH
HOH
308
A
HOH
10
2
HOH
HOH
309
A
HOH
11
2
HOH
HOH
310
A
HOH
15
2
HOH
HOH
311
A
HOH
16
2
HOH
HOH
312
A
HOH
17
2
HOH
HOH
313
A
HOH
18
2
HOH
HOH
314
A
HOH
19
2
HOH
HOH
315
A
HOH
20
2
HOH
HOH
316
A
HOH
21
2
HOH
HOH
317
A
HOH
23
2
HOH
HOH
318
A
HOH
25
2
HOH
HOH
319
A
HOH
26
2
HOH
HOH
320
A
HOH
27
2
HOH
HOH
321
A
HOH
28
2
HOH
HOH
322
A
HOH
29
2
HOH
HOH
323
A
HOH
30
2
HOH
HOH
324
A
HOH
31
2
HOH
HOH
325
A
HOH
32
2
HOH
HOH
326
A
HOH
33
2
HOH
HOH
327
A
TYR
77
n
1
TYR
77
A
ASP
78
n
2
ASP
78
A
TRP
79
n
3
TRP
79
A
ASN
80
n
4
ASN
80
A
GLY
81
n
5
GLY
81
A
ALA
82
n
6
ALA
82
A
MSE
83
n
7
MSE
83
A
GLN
84
n
8
GLN
84
A
PRO
85
n
9
PRO
85
A
LEU
86
n
10
LEU
86
A
VAL
87
n
11
VAL
87
A
SER
88
n
12
SER
88
A
LYS
89
n
13
LYS
89
A
MSE
90
n
14
MSE
90
A
LEU
91
n
15
LEU
91
A
GLN
92
n
16
GLN
92
A
ALA
93
n
17
ALA
93
A
ASP
94
n
18
ASP
94
A
GLY
95
n
19
GLY
95
A
VAL
96
n
20
VAL
96
A
THR
97
n
21
THR
97
A
ALA
98
n
22
ALA
98
A
GLY
99
n
23
GLY
99
A
SER
100
n
24
SER
100
A
VAL
101
n
25
VAL
101
A
LEU
102
n
26
LEU
102
A
LEU
103
n
27
LEU
103
A
VAL
104
n
28
VAL
104
A
ASP
105
n
29
ASP
105
A
SER
106
n
30
SER
106
A
VAL
107
n
31
VAL
107
A
ASN
108
n
32
ASN
108
A
ASN
109
n
33
ASN
109
A
ARG
110
n
34
ARG
110
A
THR
111
n
35
THR
111
A
ASN
112
n
36
ASN
112
A
GLY
113
n
37
GLY
113
A
SER
114
n
38
SER
114
A
LEU
115
n
39
LEU
115
A
ASN
116
n
40
ASN
116
A
ALA
117
n
41
ALA
117
A
ASN
118
n
42
ASN
118
A
GLU
119
n
43
GLU
119
A
ALA
120
n
44
ALA
120
A
THR
121
n
45
THR
121
A
GLU
122
n
46
GLU
122
A
THR
123
n
47
THR
123
A
LEU
124
n
48
LEU
124
A
ARG
125
n
49
ARG
125
A
ASN
126
n
50
ASN
126
A
ALA
127
n
51
ALA
127
A
LEU
128
n
52
LEU
128
A
ALA
129
n
53
ALA
129
A
ASN
130
n
54
ASN
130
A
ASN
131
n
55
ASN
131
A
GLY
132
n
56
GLY
132
A
LYS
133
n
57
LYS
133
A
PHE
134
n
58
PHE
134
A
THR
135
n
59
THR
135
A
LEU
136
n
60
LEU
136
A
VAL
137
n
61
VAL
137
A
SER
138
n
62
SER
138
A
VAL
139
n
63
VAL
139
A
GLN
140
n
64
GLN
140
A
GLN
141
n
65
GLN
141
A
LEU
142
n
66
LEU
142
A
SER
143
n
67
SER
143
A
MSE
144
n
68
MSE
144
A
ALA
145
n
69
ALA
145
A
LYS
146
n
70
LYS
146
A
GLN
147
n
71
GLN
147
A
GLN
148
n
72
GLN
148
A
LEU
149
n
73
LEU
149
A
GLY
150
n
74
GLY
150
A
LEU
151
n
75
LEU
151
A
SER
152
n
76
SER
152
A
PRO
153
n
77
PRO
153
A
GLN
154
n
78
GLN
154
A
ASP
155
n
79
ASP
155
A
SER
156
n
80
SER
156
A
LEU
157
n
81
LEU
157
A
GLY
158
n
82
GLY
158
A
THR
159
n
83
THR
159
A
ARG
160
n
84
ARG
160
A
SER
161
n
85
SER
161
A
LYS
162
n
86
LYS
162
A
ALA
163
n
87
ALA
163
A
ILE
164
n
88
ILE
164
A
GLY
165
n
89
GLY
165
A
ILE
166
n
90
ILE
166
A
ALA
167
n
91
ALA
167
A
ARG
168
n
92
ARG
168
A
ASN
169
n
93
ASN
169
A
VAL
170
n
94
VAL
170
A
GLY
171
n
95
GLY
171
A
ALA
172
n
96
ALA
172
A
GLN
173
n
97
GLN
173
A
TYR
174
n
98
TYR
174
A
VAL
175
n
99
VAL
175
A
LEU
176
n
100
LEU
176
A
TYR
177
n
101
TYR
177
A
SER
178
n
102
SER
178
A
SER
179
n
103
SER
179
A
ALA
180
n
104
ALA
180
A
SER
181
n
105
SER
181
A
GLY
182
n
106
GLY
182
A
ASN
183
n
107
ASN
183
A
VAL
184
n
108
VAL
184
A
ASN
185
n
109
ASN
185
A
ALA
186
n
110
ALA
186
A
PRO
187
n
111
PRO
187
A
ALA
188
n
112
ALA
188
A
LEU
189
n
113
LEU
189
A
GLN
190
n
114
GLN
190
A
MSE
191
n
115
MSE
191
A
GLN
192
n
116
GLN
192
A
LEU
193
n
117
LEU
193
A
MSE
194
n
118
MSE
194
A
LEU
195
n
119
LEU
195
A
VAL
196
n
120
VAL
196
A
GLN
197
n
121
GLN
197
A
THR
198
n
122
THR
198
A
GLY
199
n
123
GLY
199
A
GLU
200
n
124
GLU
200
A
ILE
201
n
125
ILE
201
A
ILE
202
n
126
ILE
202
A
TRP
203
n
127
TRP
203
A
SER
204
n
128
SER
204
A
GLY
205
n
129
GLY
205
A
LYS
206
n
130
LYS
206
A
GLY
207
n
131
GLY
207
A
ALA
208
n
132
ALA
208
A
VAL
209
n
133
VAL
209
A
GLN
210
n
134
GLN
210
A
GLN
211
n
135
GLN
211
A
n
136
212
A
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
83
SELENOMETHIONINE
A
MSE
7
MET
A
MSE
90
SELENOMETHIONINE
A
MSE
14
MET
A
MSE
144
SELENOMETHIONINE
A
MSE
68
MET
A
MSE
191
SELENOMETHIONINE
A
MSE
115
MET
A
MSE
194
SELENOMETHIONINE
A
MSE
118
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
110
A
N
ARG
34
A
O
ALA
180
A
O
ALA
104
A
O
LEU
176
A
O
LEU
100
A
N
LEU
103
A
N
LEU
27
A
N
LEU
102
A
N
LEU
26
A
O
THR
135
A
O
THR
59
A
N
ARG
110
A
N
ARG
34
A
O
ALA
180
A
O
ALA
104
A
N
VAL
175
A
N
VAL
99
A
O
MSE
194
A
O
MSE
118
A
N
MSE
191
A
N
MSE
115
A
O
GLY
205
A
O
GLY
129
1
A
GLN
212
A
GLN
136
1
Y
1
A
A
O
O
HOH
HOH
305
315
1.33
1_555
1_655
1
A
A
O
O
HOH
HOH
308
311
1.53
1_555
3_647
1
A
ALA
186
-149.99
53.46
28.992
1.08
0.00
0.00
-3.08
0.00
2.00
0.939
0.885
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.29029
0.22024
0.22328
1.97
49.30
381
7824
4.6
99.71
6.773
0.183
RANDOM
1
THROUGHOUT
SAD
0.231
0.211
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
1.97
49.30
27
1022
0
0
995
0.012
0.019
1005
0.007
0.020
984
1.410
1.968
1362
1.274
3.000
2247
0.080
0.200
161
0.006
0.020
1190
0.002
0.020
226
2.556
2.664
539
2.545
2.662
538
3.779
3.984
672
3.777
3.987
673
3.844
3.144
466
3.840
3.148
467
6.068
4.536
691
7.691
28.349
780
7.691
28.367
780
0.314
0.280
2.025
32
537
20
97.77
1.97
49.30
4Q6V
8231
8206
1
99.7
1.97
2.04
1
98.2
data collection
MxDC
phasing
PHASER
EP
refinement
REFMAC
5.8.0069
data reduction
MOSFLM
data scaling
SCALA
Penicillin-binding protein activator LpoB
LpoB C-terminal domain from Salmonella enterica (Sel-Met)
1
N
N
2
N
N
A
ASP
78
A
ASP
2
HELX_P
A
GLN
92
A
GLN
16
1
1
15
A
ASN
116
A
ASN
40
HELX_P
A
ASN
131
A
ASN
55
1
2
16
A
SER
138
A
SER
62
HELX_P
A
LEU
149
A
LEU
73
1
3
12
A
THR
159
A
THR
83
HELX_P
A
GLY
171
A
GLY
95
1
4
13
covale
1.332
A
ALA
82
A
C
ALA
6
1_555
A
MSE
83
A
N
MSE
7
1_555
covale
1.342
A
MSE
83
A
C
MSE
7
1_555
A
GLN
84
A
N
GLN
8
1_555
covale
1.334
A
LYS
89
A
C
LYS
13
1_555
A
MSE
90
A
N
MSE
14
1_555
covale
1.331
A
MSE
90
A
C
MSE
14
1_555
A
LEU
91
A
N
LEU
15
1_555
covale
1.329
A
SER
143
A
C
SER
67
1_555
A
MSE
144
A
N
MSE
68
1_555
covale
1.342
A
MSE
144
A
C
MSE
68
1_555
A
ALA
145
A
N
ALA
69
1_555
covale
1.325
A
GLN
190
A
C
GLN
114
1_555
A
MSE
191
A
N
MSE
115
1_555
covale
1.330
A
MSE
191
A
C
MSE
115
1_555
A
GLN
192
A
N
GLN
116
1_555
covale
1.333
A
LEU
193
A
C
LEU
117
1_555
A
MSE
194
A
N
MSE
118
1_555
covale
1.324
A
MSE
194
A
C
MSE
118
1_555
A
LEU
195
A
N
LEU
119
1_555
PROTEIN BINDING
mixed alpha-beta, Lipoprotein, Activator of PBP1b, PBP1b, lipidation, outer-membrane, PROTEIN BINDING
LPOB_SALTY
UNP
1
77
Q8ZQ08
YDWNGAMQPLVSKMLQADGVTAGSVLLVDSVNNRTNGSLNANEATETLRNALANNGKFTLVSVQQLSMAKQQLGLSPQDS
LGTRSKAIGIARNVGAQYVLYSSASGNVNAPALQMQLMLVQTGEIIWSGKGAVQQQ
77
212
4Q6V
77
212
Q8ZQ08
A
1
1
136
4
4
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
ASN
108
A
ASN
32
A
THR
111
A
THR
35
A
TYR
174
A
TYR
98
A
GLY
182
A
GLY
106
A
VAL
101
A
VAL
25
A
VAL
104
A
VAL
28
A
THR
135
A
THR
59
A
LEU
136
A
LEU
60
A
ASN
108
A
ASN
32
A
THR
111
A
THR
35
A
TYR
174
A
TYR
98
A
GLY
182
A
GLY
106
A
ALA
188
A
ALA
112
A
LEU
195
A
LEU
119
A
ILE
201
A
ILE
125
A
ALA
208
A
ALA
132
19
P 21 21 21