0.034072 0.000000 0.000000 0.000000 0.026364 0.000000 0.000000 0.000000 0.010143 0.00000 0.00000 0.00000 King, D.T. Strynadka, N.C.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 29.350 37.930 98.590 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 289 19245 19253 10.1074/jbc.M114.565879 24808177 Structural Insights into the Lipoprotein Outer Membrane Regulator of Penicillin-binding Protein 1B. 2014 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2012-06-01 RAYONIX MX300HE KOHZU double crystal monochromator (DCM) SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 08B1-1 CLSI 0.9795 SYNCHROTRON CLSI BEAMLINE 08B1-1 14594.638 Penicillin-binding protein activator LpoB LpoB C-terminal domain 1 man polymer 18.015 water 27 nat water PBP activator LpoB no yes YDWNGA(MSE)QPLVSK(MSE)LQADGVTAGSVLLVDSVNNRTNGSLNANEATETLRNALANNGKFTLVSVQQLS(MSE) AKQQLGLSPQDSLGTRSKAIGIARNVGAQYVLYSSASGNVNAPALQ(MSE)QL(MSE)LVQTGEIIWSGKGAVQQQ YDWNGAMQPLVSKMLQADGVTAGSVLLVDSVNNRTNGSLNANEATETLRNALANNGKFTLVSVQQLSMAKQQLGLSPQDS LGTRSKAIGIARNVGAQYVLYSSASGNVNAPALQMQLMLVQTGEIIWSGKGAVQQQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n LT2 / SGSC1412 / ATCC 700720 sample lpoB, STM1207 99287 Salmonella enterica subsp. enterica serovar Typhimurium 562 Escherichia coli 1 1.88 34.58 VAPOR DIFFUSION, SITTING DROP 4.6 0.1M NaAc pH4.6, 2M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 298.15K 298.15 repository Initial release Database references Database references 1 0 2014-05-14 1 1 2014-07-02 1 2 2014-07-23 RCSB Y RCSB 2014-04-23 REL REL HOH water HOH 1 2 HOH HOH 301 A HOH 2 2 HOH HOH 302 A HOH 3 2 HOH HOH 303 A HOH 4 2 HOH HOH 304 A HOH 5 2 HOH HOH 305 A HOH 6 2 HOH HOH 306 A HOH 7 2 HOH HOH 307 A HOH 9 2 HOH HOH 308 A HOH 10 2 HOH HOH 309 A HOH 11 2 HOH HOH 310 A HOH 15 2 HOH HOH 311 A HOH 16 2 HOH HOH 312 A HOH 17 2 HOH HOH 313 A HOH 18 2 HOH HOH 314 A HOH 19 2 HOH HOH 315 A HOH 20 2 HOH HOH 316 A HOH 21 2 HOH HOH 317 A HOH 23 2 HOH HOH 318 A HOH 25 2 HOH HOH 319 A HOH 26 2 HOH HOH 320 A HOH 27 2 HOH HOH 321 A HOH 28 2 HOH HOH 322 A HOH 29 2 HOH HOH 323 A HOH 30 2 HOH HOH 324 A HOH 31 2 HOH HOH 325 A HOH 32 2 HOH HOH 326 A HOH 33 2 HOH HOH 327 A TYR 77 n 1 TYR 77 A ASP 78 n 2 ASP 78 A TRP 79 n 3 TRP 79 A ASN 80 n 4 ASN 80 A GLY 81 n 5 GLY 81 A ALA 82 n 6 ALA 82 A MSE 83 n 7 MSE 83 A GLN 84 n 8 GLN 84 A PRO 85 n 9 PRO 85 A LEU 86 n 10 LEU 86 A VAL 87 n 11 VAL 87 A SER 88 n 12 SER 88 A LYS 89 n 13 LYS 89 A MSE 90 n 14 MSE 90 A LEU 91 n 15 LEU 91 A GLN 92 n 16 GLN 92 A ALA 93 n 17 ALA 93 A ASP 94 n 18 ASP 94 A GLY 95 n 19 GLY 95 A VAL 96 n 20 VAL 96 A THR 97 n 21 THR 97 A ALA 98 n 22 ALA 98 A GLY 99 n 23 GLY 99 A SER 100 n 24 SER 100 A VAL 101 n 25 VAL 101 A LEU 102 n 26 LEU 102 A LEU 103 n 27 LEU 103 A VAL 104 n 28 VAL 104 A ASP 105 n 29 ASP 105 A SER 106 n 30 SER 106 A VAL 107 n 31 VAL 107 A ASN 108 n 32 ASN 108 A ASN 109 n 33 ASN 109 A ARG 110 n 34 ARG 110 A THR 111 n 35 THR 111 A ASN 112 n 36 ASN 112 A GLY 113 n 37 GLY 113 A SER 114 n 38 SER 114 A LEU 115 n 39 LEU 115 A ASN 116 n 40 ASN 116 A ALA 117 n 41 ALA 117 A ASN 118 n 42 ASN 118 A GLU 119 n 43 GLU 119 A ALA 120 n 44 ALA 120 A THR 121 n 45 THR 121 A GLU 122 n 46 GLU 122 A THR 123 n 47 THR 123 A LEU 124 n 48 LEU 124 A ARG 125 n 49 ARG 125 A ASN 126 n 50 ASN 126 A ALA 127 n 51 ALA 127 A LEU 128 n 52 LEU 128 A ALA 129 n 53 ALA 129 A ASN 130 n 54 ASN 130 A ASN 131 n 55 ASN 131 A GLY 132 n 56 GLY 132 A LYS 133 n 57 LYS 133 A PHE 134 n 58 PHE 134 A THR 135 n 59 THR 135 A LEU 136 n 60 LEU 136 A VAL 137 n 61 VAL 137 A SER 138 n 62 SER 138 A VAL 139 n 63 VAL 139 A GLN 140 n 64 GLN 140 A GLN 141 n 65 GLN 141 A LEU 142 n 66 LEU 142 A SER 143 n 67 SER 143 A MSE 144 n 68 MSE 144 A ALA 145 n 69 ALA 145 A LYS 146 n 70 LYS 146 A GLN 147 n 71 GLN 147 A GLN 148 n 72 GLN 148 A LEU 149 n 73 LEU 149 A GLY 150 n 74 GLY 150 A LEU 151 n 75 LEU 151 A SER 152 n 76 SER 152 A PRO 153 n 77 PRO 153 A GLN 154 n 78 GLN 154 A ASP 155 n 79 ASP 155 A SER 156 n 80 SER 156 A LEU 157 n 81 LEU 157 A GLY 158 n 82 GLY 158 A THR 159 n 83 THR 159 A ARG 160 n 84 ARG 160 A SER 161 n 85 SER 161 A LYS 162 n 86 LYS 162 A ALA 163 n 87 ALA 163 A ILE 164 n 88 ILE 164 A GLY 165 n 89 GLY 165 A ILE 166 n 90 ILE 166 A ALA 167 n 91 ALA 167 A ARG 168 n 92 ARG 168 A ASN 169 n 93 ASN 169 A VAL 170 n 94 VAL 170 A GLY 171 n 95 GLY 171 A ALA 172 n 96 ALA 172 A GLN 173 n 97 GLN 173 A TYR 174 n 98 TYR 174 A VAL 175 n 99 VAL 175 A LEU 176 n 100 LEU 176 A TYR 177 n 101 TYR 177 A SER 178 n 102 SER 178 A SER 179 n 103 SER 179 A ALA 180 n 104 ALA 180 A SER 181 n 105 SER 181 A GLY 182 n 106 GLY 182 A ASN 183 n 107 ASN 183 A VAL 184 n 108 VAL 184 A ASN 185 n 109 ASN 185 A ALA 186 n 110 ALA 186 A PRO 187 n 111 PRO 187 A ALA 188 n 112 ALA 188 A LEU 189 n 113 LEU 189 A GLN 190 n 114 GLN 190 A MSE 191 n 115 MSE 191 A GLN 192 n 116 GLN 192 A LEU 193 n 117 LEU 193 A MSE 194 n 118 MSE 194 A LEU 195 n 119 LEU 195 A VAL 196 n 120 VAL 196 A GLN 197 n 121 GLN 197 A THR 198 n 122 THR 198 A GLY 199 n 123 GLY 199 A GLU 200 n 124 GLU 200 A ILE 201 n 125 ILE 201 A ILE 202 n 126 ILE 202 A TRP 203 n 127 TRP 203 A SER 204 n 128 SER 204 A GLY 205 n 129 GLY 205 A LYS 206 n 130 LYS 206 A GLY 207 n 131 GLY 207 A ALA 208 n 132 ALA 208 A VAL 209 n 133 VAL 209 A GLN 210 n 134 GLN 210 A GLN 211 n 135 GLN 211 A n 136 212 A author_and_software_defined_assembly PISA 1 monomeric A MSE 83 SELENOMETHIONINE A MSE 7 MET A MSE 90 SELENOMETHIONINE A MSE 14 MET A MSE 144 SELENOMETHIONINE A MSE 68 MET A MSE 191 SELENOMETHIONINE A MSE 115 MET A MSE 194 SELENOMETHIONINE A MSE 118 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 110 A N ARG 34 A O ALA 180 A O ALA 104 A O LEU 176 A O LEU 100 A N LEU 103 A N LEU 27 A N LEU 102 A N LEU 26 A O THR 135 A O THR 59 A N ARG 110 A N ARG 34 A O ALA 180 A O ALA 104 A N VAL 175 A N VAL 99 A O MSE 194 A O MSE 118 A N MSE 191 A N MSE 115 A O GLY 205 A O GLY 129 1 A GLN 212 A GLN 136 1 Y 1 A A O O HOH HOH 305 315 1.33 1_555 1_655 1 A A O O HOH HOH 308 311 1.53 1_555 3_647 1 A ALA 186 -149.99 53.46 28.992 1.08 0.00 0.00 -3.08 0.00 2.00 0.939 0.885 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.29029 0.22024 0.22328 1.97 49.30 381 7824 4.6 99.71 6.773 0.183 RANDOM 1 THROUGHOUT SAD 0.231 0.211 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 1.97 49.30 27 1022 0 0 995 0.012 0.019 1005 0.007 0.020 984 1.410 1.968 1362 1.274 3.000 2247 0.080 0.200 161 0.006 0.020 1190 0.002 0.020 226 2.556 2.664 539 2.545 2.662 538 3.779 3.984 672 3.777 3.987 673 3.844 3.144 466 3.840 3.148 467 6.068 4.536 691 7.691 28.349 780 7.691 28.367 780 0.314 0.280 2.025 32 537 20 97.77 1.97 49.30 4Q6V 8231 8206 1 99.7 1.97 2.04 1 98.2 data collection MxDC phasing PHASER EP refinement REFMAC 5.8.0069 data reduction MOSFLM data scaling SCALA Penicillin-binding protein activator LpoB LpoB C-terminal domain from Salmonella enterica (Sel-Met) 1 N N 2 N N A ASP 78 A ASP 2 HELX_P A GLN 92 A GLN 16 1 1 15 A ASN 116 A ASN 40 HELX_P A ASN 131 A ASN 55 1 2 16 A SER 138 A SER 62 HELX_P A LEU 149 A LEU 73 1 3 12 A THR 159 A THR 83 HELX_P A GLY 171 A GLY 95 1 4 13 covale 1.332 A ALA 82 A C ALA 6 1_555 A MSE 83 A N MSE 7 1_555 covale 1.342 A MSE 83 A C MSE 7 1_555 A GLN 84 A N GLN 8 1_555 covale 1.334 A LYS 89 A C LYS 13 1_555 A MSE 90 A N MSE 14 1_555 covale 1.331 A MSE 90 A C MSE 14 1_555 A LEU 91 A N LEU 15 1_555 covale 1.329 A SER 143 A C SER 67 1_555 A MSE 144 A N MSE 68 1_555 covale 1.342 A MSE 144 A C MSE 68 1_555 A ALA 145 A N ALA 69 1_555 covale 1.325 A GLN 190 A C GLN 114 1_555 A MSE 191 A N MSE 115 1_555 covale 1.330 A MSE 191 A C MSE 115 1_555 A GLN 192 A N GLN 116 1_555 covale 1.333 A LEU 193 A C LEU 117 1_555 A MSE 194 A N MSE 118 1_555 covale 1.324 A MSE 194 A C MSE 118 1_555 A LEU 195 A N LEU 119 1_555 PROTEIN BINDING mixed alpha-beta, Lipoprotein, Activator of PBP1b, PBP1b, lipidation, outer-membrane, PROTEIN BINDING LPOB_SALTY UNP 1 77 Q8ZQ08 YDWNGAMQPLVSKMLQADGVTAGSVLLVDSVNNRTNGSLNANEATETLRNALANNGKFTLVSVQQLSMAKQQLGLSPQDS LGTRSKAIGIARNVGAQYVLYSSASGNVNAPALQMQLMLVQTGEIIWSGKGAVQQQ 77 212 4Q6V 77 212 Q8ZQ08 A 1 1 136 4 4 parallel parallel parallel parallel anti-parallel anti-parallel A ASN 108 A ASN 32 A THR 111 A THR 35 A TYR 174 A TYR 98 A GLY 182 A GLY 106 A VAL 101 A VAL 25 A VAL 104 A VAL 28 A THR 135 A THR 59 A LEU 136 A LEU 60 A ASN 108 A ASN 32 A THR 111 A THR 35 A TYR 174 A TYR 98 A GLY 182 A GLY 106 A ALA 188 A ALA 112 A LEU 195 A LEU 119 A ILE 201 A ILE 125 A ALA 208 A ALA 132 19 P 21 21 21