0.024063 0.000000 0.000114 0.000000 0.017723 0.000000 0.000000 0.000000 0.017452 0.00000 0.00000 0.00000 Li, H. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.27 90.00 41.557 56.424 57.301 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer To be Published 0353 Engineering of a histone-recognition domain in a de novo DNA methyltransferase alters the epigenetic landscape of ESCs 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2010-06-30 ADSC QUANTUM 315 Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 0.9792 1.0 24-ID-E APS 0.9792 SYNCHROTRON APS BEAMLINE 24-ID-E 15386.763 DNA (cytosine-5)-methyltransferase 3A 2.1.1.37 ADD Domain, UNP residues 476-611 2 man polymer 934.075 Histone H3 H3 N-terminal 1-15 1 syn polymer 65.409 ZINC ION 6 syn non-polymer 18.015 water 104 nat water Dnmt3a, DNA methyltransferase HsaIIIA, DNA MTase HsaIIIA, M.HsaIIIA no no GPLGSLVYEVRQKCRNIEDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMCGNNN CCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLRRREDWPSRLQMFFA GPLGSLVYEVRQKCRNIEDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMCGNNN CCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLRRREDWPSRLQMFFA A,C polypeptide(L) no no ARTKQTAR ARTKQTAR P polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample DNMT3A 9606 Homo sapiens 562 Escherichia coli 1 2.12 41.95 VAPOR DIFFUSION, HANGING DROP 6.5 29% PEGMME5000, 0.1M Bis-Tris Propane-HCL, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 repository Initial release 1 0 2015-05-13 RCSB Y PDBJ 2014-05-08 REL REL ZN ZINC ION HOH water This sequence occurs naturally in humans. 9606 Homo sapiens sample THE SEQUENCE OF THE ENTITY2 OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. AUTHORS STATE THAT THE ENTITY2 HAS THE GENEBANK ACCESSION NUMBER AAH43617.1. ZN2 1 3 ZN ZN 701 A ZN2 2 3 ZN ZN 702 A ZN2 3 3 ZN ZN 703 A ZN2 1 3 ZN ZN 701 C ZN2 2 3 ZN ZN 702 C ZN2 3 3 ZN ZN 703 C HOH 1 4 HOH HOH 801 A HOH 2 4 HOH HOH 802 A HOH 4 4 HOH HOH 803 A HOH 7 4 HOH HOH 804 A HOH 8 4 HOH HOH 805 A HOH 10 4 HOH HOH 806 A HOH 11 4 HOH HOH 807 A HOH 12 4 HOH HOH 808 A HOH 13 4 HOH HOH 809 A HOH 14 4 HOH HOH 810 A HOH 15 4 HOH HOH 811 A HOH 16 4 HOH HOH 812 A HOH 17 4 HOH HOH 813 A HOH 19 4 HOH HOH 814 A HOH 21 4 HOH HOH 815 A HOH 23 4 HOH HOH 816 A HOH 24 4 HOH HOH 817 A HOH 25 4 HOH HOH 818 A HOH 26 4 HOH HOH 819 A HOH 28 4 HOH HOH 820 A HOH 30 4 HOH HOH 821 A HOH 31 4 HOH HOH 822 A HOH 37 4 HOH HOH 823 A HOH 40 4 HOH HOH 824 A HOH 41 4 HOH HOH 825 A HOH 43 4 HOH HOH 826 A HOH 44 4 HOH HOH 827 A HOH 45 4 HOH HOH 828 A HOH 49 4 HOH HOH 829 A HOH 53 4 HOH HOH 830 A HOH 58 4 HOH HOH 831 A HOH 60 4 HOH HOH 832 A HOH 69 4 HOH HOH 833 A HOH 71 4 HOH HOH 834 A HOH 73 4 HOH HOH 835 A HOH 74 4 HOH HOH 836 A HOH 75 4 HOH HOH 837 A HOH 76 4 HOH HOH 838 A HOH 79 4 HOH HOH 839 A HOH 80 4 HOH HOH 840 A HOH 82 4 HOH HOH 841 A HOH 83 4 HOH HOH 842 A HOH 85 4 HOH HOH 843 A HOH 87 4 HOH HOH 844 A HOH 88 4 HOH HOH 845 A HOH 90 4 HOH HOH 846 A HOH 91 4 HOH HOH 847 A HOH 93 4 HOH HOH 848 A HOH 94 4 HOH HOH 849 A HOH 95 4 HOH HOH 850 A HOH 97 4 HOH HOH 851 A HOH 98 4 HOH HOH 852 A HOH 100 4 HOH HOH 853 A HOH 3 4 HOH HOH 801 C HOH 5 4 HOH HOH 802 C HOH 6 4 HOH HOH 803 C HOH 9 4 HOH HOH 804 C HOH 18 4 HOH HOH 805 C HOH 20 4 HOH HOH 806 C HOH 22 4 HOH HOH 807 C HOH 27 4 HOH HOH 808 C HOH 29 4 HOH HOH 809 C HOH 32 4 HOH HOH 810 C HOH 33 4 HOH HOH 811 C HOH 34 4 HOH HOH 812 C HOH 35 4 HOH HOH 813 C HOH 36 4 HOH HOH 814 C HOH 38 4 HOH HOH 815 C HOH 39 4 HOH HOH 816 C HOH 42 4 HOH HOH 817 C HOH 46 4 HOH HOH 818 C HOH 47 4 HOH HOH 819 C HOH 48 4 HOH HOH 820 C HOH 51 4 HOH HOH 821 C HOH 52 4 HOH HOH 822 C HOH 54 4 HOH HOH 823 C HOH 55 4 HOH HOH 824 C HOH 56 4 HOH HOH 825 C HOH 57 4 HOH HOH 826 C HOH 61 4 HOH HOH 827 C HOH 62 4 HOH HOH 828 C HOH 63 4 HOH HOH 829 C HOH 64 4 HOH HOH 830 C HOH 65 4 HOH HOH 831 C HOH 66 4 HOH HOH 832 C HOH 67 4 HOH HOH 833 C HOH 68 4 HOH HOH 834 C HOH 70 4 HOH HOH 835 C HOH 72 4 HOH HOH 836 C HOH 77 4 HOH HOH 837 C HOH 78 4 HOH HOH 838 C HOH 81 4 HOH HOH 839 C HOH 84 4 HOH HOH 840 C HOH 86 4 HOH HOH 841 C HOH 89 4 HOH HOH 842 C HOH 92 4 HOH HOH 843 C HOH 96 4 HOH HOH 844 C HOH 99 4 HOH HOH 845 C HOH 101 4 HOH HOH 846 C HOH 102 4 HOH HOH 847 C HOH 103 4 HOH HOH 848 C HOH 104 4 HOH HOH 849 C HOH 50 4 HOH HOH 101 P HOH 59 4 HOH HOH 102 P GLY 474 n 1 GLY 474 A PRO 475 n 2 PRO 475 A LEU 476 n 3 LEU 476 A GLY 477 n 4 GLY 477 A SER 478 n 5 SER 478 A LEU 479 n 6 LEU 479 A VAL 480 n 7 VAL 480 A TYR 481 n 8 TYR 481 A GLU 482 n 9 GLU 482 A VAL 483 n 10 VAL 483 A ARG 484 n 11 ARG 484 A GLN 485 n 12 GLN 485 A LYS 486 n 13 LYS 486 A CYS 487 n 14 CYS 487 A ARG 488 n 15 ARG 488 A ASN 489 n 16 ASN 489 A ILE 490 n 17 ILE 490 A GLU 491 n 18 GLU 491 A ASP 492 n 19 ASP 492 A ILE 493 n 20 ILE 493 A CYS 494 n 21 CYS 494 A ILE 495 n 22 ILE 495 A SER 496 n 23 SER 496 A CYS 497 n 24 CYS 497 A GLY 498 n 25 GLY 498 A SER 499 n 26 SER 499 A LEU 500 n 27 LEU 500 A ASN 501 n 28 ASN 501 A VAL 502 n 29 VAL 502 A THR 503 n 30 THR 503 A LEU 504 n 31 LEU 504 A GLU 505 n 32 GLU 505 A HIS 506 n 33 HIS 506 A PRO 507 n 34 PRO 507 A LEU 508 n 35 LEU 508 A PHE 509 n 36 PHE 509 A VAL 510 n 37 VAL 510 A GLY 511 n 38 GLY 511 A GLY 512 n 39 GLY 512 A MET 513 n 40 MET 513 A CYS 514 n 41 CYS 514 A GLN 515 n 42 GLN 515 A ASN 516 n 43 ASN 516 A CYS 517 n 44 CYS 517 A LYS 518 n 45 LYS 518 A ASN 519 n 46 ASN 519 A CYS 520 n 47 CYS 520 A PHE 521 n 48 PHE 521 A LEU 522 n 49 LEU 522 A GLU 523 n 50 GLU 523 A CYS 524 n 51 CYS 524 A ALA 525 n 52 ALA 525 A TYR 526 n 53 TYR 526 A GLN 527 n 54 GLN 527 A TYR 528 n 55 TYR 528 A ASP 529 n 56 ASP 529 A ASP 530 n 57 ASP 530 A ASP 531 n 58 ASP 531 A GLY 532 n 59 GLY 532 A TYR 533 n 60 TYR 533 A GLN 534 n 61 GLN 534 A SER 535 n 62 SER 535 A TYR 536 n 63 TYR 536 A CYS 537 n 64 CYS 537 A THR 538 n 65 THR 538 A ILE 539 n 66 ILE 539 A CYS 540 n 67 CYS 540 A CYS 541 n 68 CYS 541 A GLY 542 n 69 GLY 542 A GLY 543 n 70 GLY 543 A ARG 544 n 71 ARG 544 A GLU 545 n 72 GLU 545 A VAL 546 n 73 VAL 546 A LEU 547 n 74 LEU 547 A MET 548 n 75 MET 548 A CYS 549 n 76 CYS 549 A GLY 550 n 77 GLY 550 A ASN 551 n 78 ASN 551 A ASN 552 n 79 ASN 552 A ASN 553 n 80 ASN 553 A CYS 554 n 81 CYS 554 A CYS 555 n 82 CYS 555 A ARG 556 n 83 ARG 556 A CYS 557 n 84 CYS 557 A PHE 558 n 85 PHE 558 A CYS 559 n 86 CYS 559 A VAL 560 n 87 VAL 560 A GLU 561 n 88 GLU 561 A CYS 562 n 89 CYS 562 A VAL 563 n 90 VAL 563 A ASP 564 n 91 ASP 564 A LEU 565 n 92 LEU 565 A LEU 566 n 93 LEU 566 A VAL 567 n 94 VAL 567 A GLY 568 n 95 GLY 568 A PRO 569 n 96 PRO 569 A GLY 570 n 97 GLY 570 A ALA 571 n 98 ALA 571 A ALA 572 n 99 ALA 572 A GLN 573 n 100 GLN 573 A ALA 574 n 101 ALA 574 A ALA 575 n 102 ALA 575 A ILE 576 n 103 ILE 576 A LYS 577 n 104 LYS 577 A GLU 578 n 105 GLU 578 A ASP 579 n 106 ASP 579 A PRO 580 n 107 PRO 580 A TRP 581 n 108 TRP 581 A ASN 582 n 109 ASN 582 A CYS 583 n 110 CYS 583 A TYR 584 n 111 TYR 584 A MET 585 n 112 MET 585 A CYS 586 n 113 CYS 586 A GLY 587 n 114 GLY 587 A HIS 588 n 115 HIS 588 A LYS 589 n 116 LYS 589 A GLY 590 n 117 GLY 590 A THR 591 n 118 THR 591 A TYR 592 n 119 TYR 592 A GLY 593 n 120 GLY 593 A LEU 594 n 121 LEU 594 A LEU 595 n 122 LEU 595 A ARG 596 n 123 ARG 596 A ARG 597 n 124 ARG 597 A ARG 598 n 125 ARG 598 A GLU 599 n 126 GLU 599 A ASP 600 n 127 ASP 600 A TRP 601 n 128 TRP 601 A PRO 602 n 129 PRO 602 A SER 603 n 130 SER 603 A ARG 604 n 131 ARG 604 A LEU 605 n 132 LEU 605 A GLN 606 n 133 GLN 606 A MET 607 n 134 MET 607 A PHE 608 n 135 PHE 608 A PHE 609 n 136 PHE 609 A ALA 610 n 137 ALA 610 A GLY 474 n 1 GLY 474 C PRO 475 n 2 PRO 475 C LEU 476 n 3 LEU 476 C GLY 477 n 4 GLY 477 C SER 478 n 5 SER 478 C LEU 479 n 6 LEU 479 C VAL 480 n 7 VAL 480 C TYR 481 n 8 TYR 481 C GLU 482 n 9 GLU 482 C VAL 483 n 10 VAL 483 C ARG 484 n 11 ARG 484 C GLN 485 n 12 GLN 485 C LYS 486 n 13 LYS 486 C CYS 487 n 14 CYS 487 C ARG 488 n 15 ARG 488 C ASN 489 n 16 ASN 489 C ILE 490 n 17 ILE 490 C GLU 491 n 18 GLU 491 C ASP 492 n 19 ASP 492 C ILE 493 n 20 ILE 493 C CYS 494 n 21 CYS 494 C ILE 495 n 22 ILE 495 C SER 496 n 23 SER 496 C CYS 497 n 24 CYS 497 C GLY 498 n 25 GLY 498 C SER 499 n 26 SER 499 C LEU 500 n 27 LEU 500 C ASN 501 n 28 ASN 501 C VAL 502 n 29 VAL 502 C THR 503 n 30 THR 503 C LEU 504 n 31 LEU 504 C GLU 505 n 32 GLU 505 C HIS 506 n 33 HIS 506 C PRO 507 n 34 PRO 507 C LEU 508 n 35 LEU 508 C PHE 509 n 36 PHE 509 C VAL 510 n 37 VAL 510 C GLY 511 n 38 GLY 511 C GLY 512 n 39 GLY 512 C MET 513 n 40 MET 513 C CYS 514 n 41 CYS 514 C GLN 515 n 42 GLN 515 C ASN 516 n 43 ASN 516 C CYS 517 n 44 CYS 517 C LYS 518 n 45 LYS 518 C ASN 519 n 46 ASN 519 C CYS 520 n 47 CYS 520 C PHE 521 n 48 PHE 521 C LEU 522 n 49 LEU 522 C GLU 523 n 50 GLU 523 C CYS 524 n 51 CYS 524 C ALA 525 n 52 ALA 525 C TYR 526 n 53 TYR 526 C GLN 527 n 54 GLN 527 C TYR 528 n 55 TYR 528 C ASP 529 n 56 ASP 529 C ASP 530 n 57 ASP 530 C ASP 531 n 58 ASP 531 C GLY 532 n 59 GLY 532 C TYR 533 n 60 TYR 533 C GLN 534 n 61 GLN 534 C SER 535 n 62 SER 535 C TYR 536 n 63 TYR 536 C CYS 537 n 64 CYS 537 C THR 538 n 65 THR 538 C ILE 539 n 66 ILE 539 C CYS 540 n 67 CYS 540 C CYS 541 n 68 CYS 541 C GLY 542 n 69 GLY 542 C GLY 543 n 70 GLY 543 C ARG 544 n 71 ARG 544 C GLU 545 n 72 GLU 545 C VAL 546 n 73 VAL 546 C LEU 547 n 74 LEU 547 C MET 548 n 75 MET 548 C CYS 549 n 76 CYS 549 C GLY 550 n 77 GLY 550 C ASN 551 n 78 ASN 551 C ASN 552 n 79 ASN 552 C ASN 553 n 80 ASN 553 C CYS 554 n 81 CYS 554 C CYS 555 n 82 CYS 555 C ARG 556 n 83 ARG 556 C CYS 557 n 84 CYS 557 C PHE 558 n 85 PHE 558 C CYS 559 n 86 CYS 559 C VAL 560 n 87 VAL 560 C GLU 561 n 88 GLU 561 C CYS 562 n 89 CYS 562 C VAL 563 n 90 VAL 563 C ASP 564 n 91 ASP 564 C LEU 565 n 92 LEU 565 C LEU 566 n 93 LEU 566 C VAL 567 n 94 VAL 567 C GLY 568 n 95 GLY 568 C PRO 569 n 96 PRO 569 C GLY 570 n 97 GLY 570 C ALA 571 n 98 ALA 571 C ALA 572 n 99 ALA 572 C GLN 573 n 100 GLN 573 C ALA 574 n 101 ALA 574 C ALA 575 n 102 ALA 575 C ILE 576 n 103 ILE 576 C LYS 577 n 104 LYS 577 C GLU 578 n 105 GLU 578 C ASP 579 n 106 ASP 579 C PRO 580 n 107 PRO 580 C TRP 581 n 108 TRP 581 C ASN 582 n 109 ASN 582 C CYS 583 n 110 CYS 583 C TYR 584 n 111 TYR 584 C MET 585 n 112 MET 585 C CYS 586 n 113 CYS 586 C GLY 587 n 114 GLY 587 C HIS 588 n 115 HIS 588 C LYS 589 n 116 LYS 589 C GLY 590 n 117 GLY 590 C THR 591 n 118 THR 591 C TYR 592 n 119 TYR 592 C GLY 593 n 120 GLY 593 C LEU 594 n 121 LEU 594 C LEU 595 n 122 LEU 595 C ARG 596 n 123 ARG 596 C ARG 597 n 124 ARG 597 C ARG 598 n 125 ARG 598 C GLU 599 n 126 GLU 599 C ASP 600 n 127 ASP 600 C TRP 601 n 128 TRP 601 C PRO 602 n 129 PRO 602 C SER 603 n 130 SER 603 C ARG 604 n 131 ARG 604 C LEU 605 n 132 LEU 605 C GLN 606 n 133 GLN 606 C MET 607 n 134 MET 607 C PHE 608 n 135 PHE 608 C PHE 609 n 136 PHE 609 C ALA 610 n 137 ALA 610 C ALA 1 n 1 ALA 1 P ARG 2 n 2 ARG 2 P THR 3 n 3 THR 3 P LYS 4 n 4 LYS 4 P GLN 5 n 5 GLN 5 P THR 6 n 6 THR 6 P ALA 7 n 7 ALA 7 P ARG 8 n 8 ARG 8 P author_and_software_defined_assembly PISA 3 trimeric 2400 -9 14090 C CYS 517 B SG CYS 44 1_555 C ZN 703 I ZN ZN 1_555 C CYS 494 B SG CYS 21 1_555 109.5 C CYS 517 B SG CYS 44 1_555 C ZN 703 I ZN ZN 1_555 C CYS 497 B SG CYS 24 1_555 102.6 C CYS 494 B SG CYS 21 1_555 C ZN 703 I ZN ZN 1_555 C CYS 497 B SG CYS 24 1_555 113.9 C CYS 517 B SG CYS 44 1_555 C ZN 703 I ZN ZN 1_555 C CYS 514 B SG CYS 41 1_555 109.5 C CYS 494 B SG CYS 21 1_555 C ZN 703 I ZN ZN 1_555 C CYS 514 B SG CYS 41 1_555 115.9 C CYS 497 B SG CYS 24 1_555 C ZN 703 I ZN ZN 1_555 C CYS 514 B SG CYS 41 1_555 104.5 A CYS 517 A SG CYS 44 1_555 A ZN 703 F ZN ZN 1_555 A CYS 494 A SG CYS 21 1_555 111.9 A CYS 517 A SG CYS 44 1_555 A ZN 703 F ZN ZN 1_555 A CYS 514 A SG CYS 41 1_555 101.8 A CYS 494 A SG CYS 21 1_555 A ZN 703 F ZN ZN 1_555 A CYS 514 A SG CYS 41 1_555 113.7 A CYS 517 A SG CYS 44 1_555 A ZN 703 F ZN ZN 1_555 A CYS 497 A SG CYS 24 1_555 108.8 A CYS 494 A SG CYS 21 1_555 A ZN 703 F ZN ZN 1_555 A CYS 497 A SG CYS 24 1_555 114.0 A CYS 514 A SG CYS 41 1_555 A ZN 703 F ZN ZN 1_555 A CYS 497 A SG CYS 24 1_555 105.7 C CYS 554 B SG CYS 81 1_555 C ZN 701 G ZN ZN 1_555 C CYS 549 B SG CYS 76 1_555 112.0 C CYS 554 B SG CYS 81 1_555 C ZN 701 G ZN ZN 1_555 C CYS 583 B SG CYS 110 1_555 106.0 C CYS 549 B SG CYS 76 1_555 C ZN 701 G ZN ZN 1_555 C CYS 583 B SG CYS 110 1_555 108.2 C CYS 554 B SG CYS 81 1_555 C ZN 701 G ZN ZN 1_555 C CYS 586 B SG CYS 113 1_555 98.6 C CYS 549 B SG CYS 76 1_555 C ZN 701 G ZN ZN 1_555 C CYS 586 B SG CYS 113 1_555 119.9 C CYS 583 B SG CYS 110 1_555 C ZN 701 G ZN ZN 1_555 C CYS 586 B SG CYS 113 1_555 111.1 A CYS 562 A SG CYS 89 1_555 A ZN 702 E ZN ZN 1_555 A CYS 540 A SG CYS 67 1_555 110.7 A CYS 562 A SG CYS 89 1_555 A ZN 702 E ZN ZN 1_555 A CYS 537 A SG CYS 64 1_555 113.4 A CYS 540 A SG CYS 67 1_555 A ZN 702 E ZN ZN 1_555 A CYS 537 A SG CYS 64 1_555 106.3 A CYS 562 A SG CYS 89 1_555 A ZN 702 E ZN ZN 1_555 A CYS 559 A SG CYS 86 1_555 103.0 A CYS 540 A SG CYS 67 1_555 A ZN 702 E ZN ZN 1_555 A CYS 559 A SG CYS 86 1_555 110.4 A CYS 537 A SG CYS 64 1_555 A ZN 702 E ZN ZN 1_555 A CYS 559 A SG CYS 86 1_555 113.0 C CYS 562 B SG CYS 89 1_555 C ZN 702 H ZN ZN 1_555 C CYS 559 B SG CYS 86 1_555 110.2 C CYS 562 B SG CYS 89 1_555 C ZN 702 H ZN ZN 1_555 C CYS 537 B SG CYS 64 1_555 111.2 C CYS 559 B SG CYS 86 1_555 C ZN 702 H ZN ZN 1_555 C CYS 537 B SG CYS 64 1_555 112.5 C CYS 562 B SG CYS 89 1_555 C ZN 702 H ZN ZN 1_555 C CYS 540 B SG CYS 67 1_555 106.1 C CYS 559 B SG CYS 86 1_555 C ZN 702 H ZN ZN 1_555 C CYS 540 B SG CYS 67 1_555 112.2 C CYS 537 B SG CYS 64 1_555 C ZN 702 H ZN ZN 1_555 C CYS 540 B SG CYS 67 1_555 104.3 A CYS 549 A SG CYS 76 1_555 A ZN 701 D ZN ZN 1_555 A CYS 586 A SG CYS 113 1_555 110.0 A CYS 549 A SG CYS 76 1_555 A ZN 701 D ZN ZN 1_555 A CYS 554 A SG CYS 81 1_555 115.5 A CYS 586 A SG CYS 113 1_555 A ZN 701 D ZN ZN 1_555 A CYS 554 A SG CYS 81 1_555 103.9 A CYS 549 A SG CYS 76 1_555 A ZN 701 D ZN ZN 1_555 A CYS 583 A SG CYS 110 1_555 110.6 A CYS 586 A SG CYS 113 1_555 A ZN 701 D ZN ZN 1_555 A CYS 583 A SG CYS 110 1_555 113.7 A CYS 554 A SG CYS 81 1_555 A ZN 701 D ZN ZN 1_555 A CYS 583 A SG CYS 110 1_555 103.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 504 A N LEU 31 A O MET 513 A O MET 40 A N LEU 547 A N LEU 74 A O PHE 558 A O PHE 85 A N TYR 592 A N TYR 119 A O LEU 595 A O LEU 122 C N LEU 504 B N LEU 31 C O MET 513 B O MET 40 C O PHE 558 B O PHE 85 C N LEU 547 B N LEU 74 C N VAL 546 B N VAL 73 P O LYS 4 C O LYS 4 C N TYR 592 B N TYR 119 C O LEU 595 B O LEU 122 1 A A O O HOH HOH 848 849 1.93 1 A A O O HOH HOH 806 843 1.95 1 A A O O HOH HOH 821 836 2.02 1 A A NH2 O ARG HOH 596 838 2.14 1 A A OE1 NH2 GLU ARG 505 604 2.19 1 A ARG 544 -95.19 -101.44 1 A CYS 554 -121.68 -71.21 1 A LYS 577 -93.54 48.71 1 C CYS 497 -143.16 -16.27 1 C ARG 544 -96.38 -73.02 1 C ASN 552 54.43 -93.34 1 C ASN 553 -67.94 9.69 1 C CYS 554 -103.20 -69.40 1 C PRO 580 -74.89 -155.63 1 C PHE 609 -91.78 45.85 1 P ALA 7 -112.58 74.17 0.2304 0.1736 0.1764 2.406 41.557 497 10420 10329 4.81 99.13 0.28 RANDOM 1 1.38 MOLECULAR REPLACEMENT 23.92 0.90 1.11 ML FLAT BULK SOLVENT MODEL 2.406 41.557 104 2299 6 0 2189 0.009 2235 1.262 3012 18.089 827 0.082 312 0.004 401 0.2954 0.2096 2.6485 121 2368 4 97.00 0.2693 0.1982 3.0316 124 2479 4 100.00 0.2172 0.1687 3.8191 129 2465 4 100.00 0.2031 0.1556 41.5627 123 2520 4 100.00 2.4 50 4QBQ 10349 -3 -3 0.117 1 4.8 99.9 2.40 2.46 1 99.4 2.46 2.52 1 99.6 2.52 2.59 1 100.0 2.59 2.66 1 100.0 2.66 2.75 1 100.0 2.75 2.85 1 100.0 2.85 2.96 1 100.0 2.96 3.09 1 100.0 3.09 3.26 1 99.9 3.26 3.46 1 100.0 3.46 3.73 1 100.0 3.73 4.10 1 100.0 4.10 4.70 1 100.0 4.70 5.92 1 100.0 5.92 50.00 1 100.0 data collection HKL-2000 phasing MOLREP refinement PHENIX (phenix.refine: 1.8.2_1309) data reduction HKL-2000 data scaling HKL-2000 DNA (cytosine-5)-methyltransferase 3A (E.C.2.1.1.37), Histone H3 Crystal structure of DNMT3a ADD domain bound to H3 peptide 1 N N 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N 4 N N A GLY 474 A GLY 1 HELX_P A GLN 485 A GLN 12 1 1 12 A ASN 489 A ASN 16 HELX_P A ILE 493 A ILE 20 5 2 5 A CYS 514 A CYS 41 HELX_P A ALA 525 A ALA 52 1 3 12 A VAL 560 A VAL 87 HELX_P A VAL 567 A VAL 94 1 4 8 A GLY 570 A GLY 97 HELX_P A LYS 577 A LYS 104 1 5 8 A ASP 600 A ASP 127 HELX_P A PHE 609 A PHE 136 1 6 10 C PRO 475 B PRO 2 HELX_P C GLN 485 B GLN 12 1 7 11 C ASN 489 B ASN 16 HELX_P C ILE 493 B ILE 20 5 8 5 C CYS 514 B CYS 41 HELX_P C CYS 524 B CYS 51 1 9 11 C VAL 560 B VAL 87 HELX_P C VAL 567 B VAL 94 1 10 8 C GLY 570 B GLY 97 HELX_P C GLU 578 B GLU 105 1 11 9 C ASP 600 B ASP 127 HELX_P C PHE 609 B PHE 136 1 12 10 disulf 2.032 C CYS 524 B SG CYS 51 1_555 C CYS 541 B SG CYS 68 1_555 metalc 2.382 C CYS 517 B SG CYS 44 1_555 C ZN 703 I ZN ZN 1_555 metalc 2.387 C CYS 494 B SG CYS 21 1_555 C ZN 703 I ZN ZN 1_555 metalc 2.397 A CYS 517 A SG CYS 44 1_555 A ZN 703 F ZN ZN 1_555 metalc 2.420 C CYS 554 B SG CYS 81 1_555 C ZN 701 G ZN ZN 1_555 metalc 2.424 A CYS 562 A SG CYS 89 1_555 A ZN 702 E ZN ZN 1_555 metalc 2.435 C CYS 549 B SG CYS 76 1_555 C ZN 701 G ZN ZN 1_555 metalc 2.457 C CYS 562 B SG CYS 89 1_555 C ZN 702 H ZN ZN 1_555 metalc 2.465 A CYS 540 A SG CYS 67 1_555 A ZN 702 E ZN ZN 1_555 metalc 2.466 C CYS 559 B SG CYS 86 1_555 C ZN 702 H ZN ZN 1_555 metalc 2.473 A CYS 549 A SG CYS 76 1_555 A ZN 701 D ZN ZN 1_555 metalc 2.480 A CYS 586 A SG CYS 113 1_555 A ZN 701 D ZN ZN 1_555 metalc 2.486 A CYS 537 A SG CYS 64 1_555 A ZN 702 E ZN ZN 1_555 metalc 2.488 A CYS 559 A SG CYS 86 1_555 A ZN 702 E ZN ZN 1_555 metalc 2.491 A CYS 494 A SG CYS 21 1_555 A ZN 703 F ZN ZN 1_555 metalc 2.515 C CYS 537 B SG CYS 64 1_555 C ZN 702 H ZN ZN 1_555 metalc 2.519 A CYS 514 A SG CYS 41 1_555 A ZN 703 F ZN ZN 1_555 metalc 2.520 A CYS 554 A SG CYS 81 1_555 A ZN 701 D ZN ZN 1_555 metalc 2.526 A CYS 583 A SG CYS 110 1_555 A ZN 701 D ZN ZN 1_555 metalc 2.530 C CYS 497 B SG CYS 24 1_555 C ZN 703 I ZN ZN 1_555 metalc 2.536 A CYS 497 A SG CYS 24 1_555 A ZN 703 F ZN ZN 1_555 metalc 2.553 C CYS 540 B SG CYS 67 1_555 C ZN 702 H ZN ZN 1_555 metalc 2.556 C CYS 514 B SG CYS 41 1_555 C ZN 703 I ZN ZN 1_555 metalc 2.566 C CYS 583 B SG CYS 110 1_555 C ZN 701 G ZN ZN 1_555 metalc 2.587 C CYS 586 B SG CYS 113 1_555 C ZN 701 G ZN ZN 1_555 TRANSFERASE Zinc Finger, Histone Binding, TRANSFERASE A ASP 579 A ASP 106 1 A PRO 580 A PRO 107 -4.83 C ASP 579 B ASP 106 1 C PRO 580 B PRO 107 -4.19 DNM3A_HUMAN UNP 1 479 Q9Y6K1 LVYEVRQKCRNIEDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMCGNNNCCRCF CVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLRRREDWPSRLQMFFA 4QBQ PDB 2 4QBQ 479 610 4QBQ 479 610 Q9Y6K1 A 1 6 137 479 610 4QBQ 479 610 Q9Y6K1 C 1 6 137 1 8 4QBQ 1 8 4QBQ P 2 1 8 1 EXPRESSION TAG GLY 474 4QBQ A Q9Y6K1 UNP 1 1 EXPRESSION TAG PRO 475 4QBQ A Q9Y6K1 UNP 2 1 EXPRESSION TAG LEU 476 4QBQ A Q9Y6K1 UNP 3 1 EXPRESSION TAG GLY 477 4QBQ A Q9Y6K1 UNP 4 1 EXPRESSION TAG SER 478 4QBQ A Q9Y6K1 UNP 5 2 EXPRESSION TAG GLY 474 4QBQ C Q9Y6K1 UNP 1 2 EXPRESSION TAG PRO 475 4QBQ C Q9Y6K1 UNP 2 2 EXPRESSION TAG LEU 476 4QBQ C Q9Y6K1 UNP 3 2 EXPRESSION TAG GLY 477 4QBQ C Q9Y6K1 UNP 4 2 EXPRESSION TAG SER 478 4QBQ C Q9Y6K1 UNP 5 2 2 2 2 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 504 A LEU 31 A GLU 505 A GLU 32 A GLY 512 A GLY 39 A MET 513 A MET 40 A VAL 546 A VAL 73 A MET 548 A MET 75 A CYS 557 A CYS 84 A CYS 559 A CYS 86 A THR 591 A THR 118 A TYR 592 A TYR 119 A LEU 595 A LEU 122 A ARG 596 A ARG 123 C LEU 504 B LEU 31 C GLU 505 B GLU 32 C GLY 512 B GLY 39 C MET 513 B MET 40 C CYS 557 B CYS 84 C CYS 559 B CYS 86 C GLU 545 B GLU 72 C MET 548 B MET 75 P THR 3 C THR 3 P GLN 5 C GLN 5 C THR 591 B THR 118 C TYR 592 B TYR 119 C LEU 595 B LEU 122 C ARG 596 B ARG 123 BINDING SITE FOR RESIDUE ZN A 701 Software 4 BINDING SITE FOR RESIDUE ZN A 702 Software 4 BINDING SITE FOR RESIDUE ZN A 703 Software 4 BINDING SITE FOR RESIDUE ZN C 701 Software 4 BINDING SITE FOR RESIDUE ZN C 702 Software 4 BINDING SITE FOR RESIDUE ZN C 703 Software 4 A CYS 549 A CYS 76 4 1_555 A CYS 554 A CYS 81 4 1_555 A CYS 583 A CYS 110 4 1_555 A CYS 586 A CYS 113 4 1_555 A CYS 537 A CYS 64 4 1_555 A CYS 540 A CYS 67 4 1_555 A CYS 559 A CYS 86 4 1_555 A CYS 562 A CYS 89 4 1_555 A CYS 494 A CYS 21 4 1_555 A CYS 497 A CYS 24 4 1_555 A CYS 514 A CYS 41 4 1_555 A CYS 517 A CYS 44 4 1_555 C CYS 549 B CYS 76 4 1_555 C CYS 554 B CYS 81 4 1_555 C CYS 583 B CYS 110 4 1_555 C CYS 586 B CYS 113 4 1_555 C CYS 537 B CYS 64 4 1_555 C CYS 540 B CYS 67 4 1_555 C CYS 559 B CYS 86 4 1_555 C CYS 562 B CYS 89 4 1_555 C CYS 494 B CYS 21 4 1_555 C CYS 497 B CYS 24 4 1_555 C CYS 514 B CYS 41 4 1_555 C CYS 517 B CYS 44 4 1_555 4 P 1 21 1