0.009367
0.000000
0.001342
-0.000000
0.017334
0.000000
0.000000
-0.000000
0.029730
0.00000
0.00000
0.00000
Milaczewska, A.M.
Chruszcz, M.
Majorek, K.A.
Porebski, P.J.
Borowski, T.
Anderson, W.F.
0000-0001-7075-7090
Minor, W.
Center for Structural Genomics of Infectious Diseases (CSGID)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
98.15
90.00
106.761
57.690
33.980
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CD
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
Y
129
N
C
Y
130
N
N
Y
131
N
C
Y
132
N
C
Y
133
N
N
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
S
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
N
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
S
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
O
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
R
C
N
296
N
O
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
N
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
N
346
N
O
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
To be Published
0353
Acireductone dioxygenase from Bacillus anthracis with three cadmium ions
0000-0001-7075-7090
10.2210/pdb4qgl/pdb
pdb_00004qgl
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Beryllium Lenses
CCD
2012-04-14
MARMOSAIC 300 mm CCD
Diamond [111]
SINGLE WAVELENGTH
M
x-ray
1
0.97857
1.0
21-ID-G
APS
0.97857
SYNCHROTRON
APS BEAMLINE 21-ID-G
19843.188
Acireductone dioxygenase
1.13.11.54, 1.13.11.53
1
man
polymer
112.411
CADMIUM ION
3
syn
non-polymer
18.015
water
32
nat
water
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, DHK-MTPene dioxygenase, Acireductone dioxygenase (Fe(2+)-requiring), ARD', Fe-ARD, Acireductone dioxygenase (Ni(2+)-requiring), ARD, Ni-ARD
no
no
GAAAMAQIRIHEVNTRIENEVKVSKFLQEEGVLYEKWNISKLPPHLNENYSLTDENKAEILAVFSKEIADVSARRGYKAH
DVISLSNSTPNLDELLINFQKEHHHTDDEVRFIVSGHGIFAIEGKDGTFFDVELEPGDLISVPENARHYFTLQDDRQVVA
IRIFVTTEGWVPIY
GAAAMAQIRIHEVNTRIENEVKVSKFLQEEGVLYEKWNISKLPPHLNENYSLTDENKAEILAVFSKEIADVSARRGYKAH
DVISLSNSTPNLDELLINFQKEHHHTDDEVRFIVSGHGIFAIEGKDGTFFDVELEPGDLISVPENARHYFTLQDDRQVVA
IRIFVTTEGWVPIY
A
CSGID-IDP04136
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
anthrax,anthrax bacterium
Ames Ancestor
sample
BAS3949, BA_4258, GBAA4258, GBAA_4258, mtnD
261594
Bacillus anthracis
511693
Escherichia coli
BL21 CodonPlus DE3 RIPL
plasmid
pET15b
1
2.61
52.87
VAPOR DIFFUSION, SITTING DROP
9.0
Protein: 5.5mg/ml, in 50 mM Tris-HCl pH 7.8, 150mM NaCl, 1mM CdCl2, Crystallization condition: 62% Tacsimate pH=9.0, 15mM NaCl, 2% glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
Center for Structural Genomics of Infectious Diseases
CSGID
software
audit_author
citation_author
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Structure summary
Refinement description
Database references
Derived calculations
Structure summary
Data collection
Refinement description
1
0
2014-06-18
1
1
2017-02-08
1
2
2017-11-22
1
3
2022-04-13
1
4
2023-09-20
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2014-05-23
REL
REL
CD
CADMIUM ION
HOH
water
1VR3
PDB
experimental model
CD
1
2
CD
CD
201
A
CD
2
2
CD
CD
202
A
CD
3
2
CD
CD
203
A
HOH
1
3
HOH
HOH
301
A
HOH
3
3
HOH
HOH
302
A
HOH
4
3
HOH
HOH
303
A
HOH
5
3
HOH
HOH
304
A
HOH
9
3
HOH
HOH
305
A
HOH
10
3
HOH
HOH
306
A
HOH
11
3
HOH
HOH
307
A
HOH
12
3
HOH
HOH
308
A
HOH
13
3
HOH
HOH
309
A
HOH
14
3
HOH
HOH
310
A
HOH
15
3
HOH
HOH
311
A
HOH
17
3
HOH
HOH
312
A
HOH
19
3
HOH
HOH
313
A
HOH
20
3
HOH
HOH
314
A
HOH
21
3
HOH
HOH
315
A
HOH
22
3
HOH
HOH
316
A
HOH
24
3
HOH
HOH
317
A
HOH
25
3
HOH
HOH
318
A
HOH
27
3
HOH
HOH
319
A
HOH
29
3
HOH
HOH
320
A
HOH
30
3
HOH
HOH
321
A
HOH
31
3
HOH
HOH
322
A
HOH
36
3
HOH
HOH
323
A
HOH
37
3
HOH
HOH
324
A
HOH
38
3
HOH
HOH
325
A
HOH
39
3
HOH
HOH
326
A
HOH
41
3
HOH
HOH
327
A
HOH
42
3
HOH
HOH
328
A
HOH
43
3
HOH
HOH
329
A
HOH
44
3
HOH
HOH
330
A
HOH
45
3
HOH
HOH
331
A
HOH
47
3
HOH
HOH
332
A
GLY
-3
n
1
GLY
-3
A
ALA
-2
n
2
ALA
-2
A
ALA
-1
n
3
ALA
-1
A
ALA
0
n
4
ALA
0
A
MET
1
n
5
MET
1
A
ALA
2
n
6
ALA
2
A
GLN
3
n
7
GLN
3
A
ILE
4
n
8
ILE
4
A
ARG
5
n
9
ARG
5
A
ILE
6
n
10
ILE
6
A
HIS
7
n
11
HIS
7
A
GLU
8
n
12
GLU
8
A
VAL
9
n
13
VAL
9
A
ASN
10
n
14
ASN
10
A
THR
11
n
15
THR
11
A
ARG
12
n
16
ARG
12
A
ILE
13
n
17
ILE
13
A
GLU
14
n
18
GLU
14
A
ASN
15
n
19
ASN
15
A
GLU
16
n
20
GLU
16
A
VAL
17
n
21
VAL
17
A
LYS
18
n
22
LYS
18
A
VAL
19
n
23
VAL
19
A
SER
20
n
24
SER
20
A
LYS
21
n
25
LYS
21
A
PHE
22
n
26
PHE
22
A
LEU
23
n
27
LEU
23
A
GLN
24
n
28
GLN
24
A
GLU
25
n
29
GLU
25
A
GLU
26
n
30
GLU
26
A
GLY
27
n
31
GLY
27
A
VAL
28
n
32
VAL
28
A
LEU
29
n
33
LEU
29
A
TYR
30
n
34
TYR
30
A
GLU
31
n
35
GLU
31
A
LYS
32
n
36
LYS
32
A
TRP
33
n
37
TRP
33
A
ASN
34
n
38
ASN
34
A
ILE
35
n
39
ILE
35
A
SER
36
n
40
SER
36
A
LYS
37
n
41
LYS
37
A
LEU
38
n
42
LEU
38
A
PRO
39
n
43
PRO
39
A
PRO
40
n
44
PRO
40
A
HIS
41
n
45
HIS
41
A
LEU
42
n
46
LEU
42
A
ASN
43
n
47
ASN
43
A
GLU
44
n
48
GLU
44
A
ASN
45
n
49
ASN
45
A
TYR
46
n
50
TYR
46
A
SER
47
n
51
SER
47
A
LEU
48
n
52
LEU
48
A
THR
49
n
53
THR
49
A
ASP
50
n
54
ASP
50
A
GLU
51
n
55
GLU
51
A
ASN
52
n
56
ASN
52
A
LYS
53
n
57
LYS
53
A
ALA
54
n
58
ALA
54
A
GLU
55
n
59
GLU
55
A
ILE
56
n
60
ILE
56
A
LEU
57
n
61
LEU
57
A
ALA
58
n
62
ALA
58
A
VAL
59
n
63
VAL
59
A
PHE
60
n
64
PHE
60
A
SER
61
n
65
SER
61
A
LYS
62
n
66
LYS
62
A
GLU
63
n
67
GLU
63
A
ILE
64
n
68
ILE
64
A
ALA
65
n
69
ALA
65
A
ASP
66
n
70
ASP
66
A
VAL
67
n
71
VAL
67
A
SER
68
n
72
SER
68
A
ALA
69
n
73
ALA
69
A
ARG
70
n
74
ARG
70
A
ARG
71
n
75
ARG
71
A
GLY
72
n
76
GLY
72
A
TYR
73
n
77
TYR
73
A
LYS
74
n
78
LYS
74
A
ALA
75
n
79
ALA
75
A
HIS
76
n
80
HIS
76
A
ASP
77
n
81
ASP
77
A
VAL
78
n
82
VAL
78
A
ILE
79
n
83
ILE
79
A
SER
80
n
84
SER
80
A
LEU
81
n
85
LEU
81
A
SER
82
n
86
SER
82
A
ASN
83
n
87
ASN
83
A
SER
84
n
88
SER
84
A
THR
85
n
89
THR
85
A
PRO
86
n
90
PRO
86
A
ASN
87
n
91
ASN
87
A
LEU
88
n
92
LEU
88
A
ASP
89
n
93
ASP
89
A
GLU
90
n
94
GLU
90
A
LEU
91
n
95
LEU
91
A
LEU
92
n
96
LEU
92
A
ILE
93
n
97
ILE
93
A
ASN
94
n
98
ASN
94
A
PHE
95
n
99
PHE
95
A
GLN
96
n
100
GLN
96
A
LYS
97
n
101
LYS
97
A
GLU
98
n
102
GLU
98
A
HIS
99
n
103
HIS
99
A
HIS
100
n
104
HIS
100
A
HIS
101
n
105
HIS
101
A
THR
102
n
106
THR
102
A
ASP
103
n
107
ASP
103
A
ASP
104
n
108
ASP
104
A
GLU
105
n
109
GLU
105
A
VAL
106
n
110
VAL
106
A
ARG
107
n
111
ARG
107
A
PHE
108
n
112
PHE
108
A
ILE
109
n
113
ILE
109
A
VAL
110
n
114
VAL
110
A
SER
111
n
115
SER
111
A
GLY
112
n
116
GLY
112
A
HIS
113
n
117
HIS
113
A
GLY
114
n
118
GLY
114
A
ILE
115
n
119
ILE
115
A
PHE
116
n
120
PHE
116
A
ALA
117
n
121
ALA
117
A
ILE
118
n
122
ILE
118
A
GLU
119
n
123
GLU
119
A
GLY
120
n
124
GLY
120
A
LYS
121
n
125
LYS
121
A
ASP
122
n
126
ASP
122
A
GLY
123
n
127
GLY
123
A
THR
124
n
128
THR
124
A
PHE
125
n
129
PHE
125
A
PHE
126
n
130
PHE
126
A
ASP
127
n
131
ASP
127
A
VAL
128
n
132
VAL
128
A
GLU
129
n
133
GLU
129
A
LEU
130
n
134
LEU
130
A
GLU
131
n
135
GLU
131
A
PRO
132
n
136
PRO
132
A
GLY
133
n
137
GLY
133
A
ASP
134
n
138
ASP
134
A
LEU
135
n
139
LEU
135
A
ILE
136
n
140
ILE
136
A
SER
137
n
141
SER
137
A
VAL
138
n
142
VAL
138
A
PRO
139
n
143
PRO
139
A
GLU
140
n
144
GLU
140
A
ASN
141
n
145
ASN
141
A
ALA
142
n
146
ALA
142
A
ARG
143
n
147
ARG
143
A
HIS
144
n
148
HIS
144
A
TYR
145
n
149
TYR
145
A
PHE
146
n
150
PHE
146
A
THR
147
n
151
THR
147
A
LEU
148
n
152
LEU
148
A
GLN
149
n
153
GLN
149
A
ASP
150
n
154
ASP
150
A
ASP
151
n
155
ASP
151
A
ARG
152
n
156
ARG
152
A
GLN
153
n
157
GLN
153
A
VAL
154
n
158
VAL
154
A
VAL
155
n
159
VAL
155
A
ALA
156
n
160
ALA
156
A
ILE
157
n
161
ILE
157
A
ARG
158
n
162
ARG
158
A
ILE
159
n
163
ILE
159
A
PHE
160
n
164
PHE
160
A
VAL
161
n
165
VAL
161
A
THR
162
n
166
THR
162
A
THR
163
n
167
THR
163
A
GLU
164
n
168
GLU
164
A
GLY
165
n
169
GLY
165
A
TRP
166
n
170
TRP
166
A
VAL
167
n
171
VAL
167
A
PRO
168
n
172
PRO
168
A
ILE
169
n
173
ILE
169
A
TYR
170
n
174
TYR
170
A
0.7022
-0.1086
-0.1615
1.4289
0.5934
1.5531
-0.0254
0.0436
-0.0243
0.1755
0.0688
-0.0215
0.0336
0.0187
-0.0434
0.2675
0.0122
0.0162
0.3891
0.0044
0.0038
refined
34.8870
30.4940
19.6180
X-RAY DIFFRACTION
A
-3
A
170
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
1
monomeric
A
GLY
-3
A
O
GLY
1
1_555
A
CD
202
C
CD
CD
1_555
A
HIS
113
A
NE2
HIS
117
1_555
153.3
A
GLY
-3
A
O
GLY
1
1_555
A
CD
202
C
CD
CD
1_555
A
GLU
131
A
OE2
GLU
135
1_555
82.1
A
HIS
113
A
NE2
HIS
117
1_555
A
CD
202
C
CD
CD
1_555
A
GLU
131
A
OE2
GLU
135
1_555
106.9
A
GLY
-3
A
O
GLY
1
1_555
A
CD
202
C
CD
CD
1_555
A
GLU
131
A
OE1
GLU
135
1_555
108.9
A
HIS
113
A
NE2
HIS
117
1_555
A
CD
202
C
CD
CD
1_555
A
GLU
131
A
OE1
GLU
135
1_555
96.5
A
GLU
131
A
OE2
GLU
135
1_555
A
CD
202
C
CD
CD
1_555
A
GLU
131
A
OE1
GLU
135
1_555
55.2
A
HIS
99
A
NE2
HIS
103
1_555
A
CD
201
B
CD
CD
1_555
A
HIS
101
A
NE2
HIS
105
1_555
88.4
A
HIS
99
A
NE2
HIS
103
1_555
A
CD
201
B
CD
CD
1_555
A
GLU
105
A
OE1
GLU
109
1_555
164.2
A
HIS
101
A
NE2
HIS
105
1_555
A
CD
201
B
CD
CD
1_555
A
GLU
105
A
OE1
GLU
109
1_555
86.6
A
HIS
99
A
NE2
HIS
103
1_555
A
CD
201
B
CD
CD
1_555
A
HIS
144
A
NE2
HIS
148
1_555
96.6
A
HIS
101
A
NE2
HIS
105
1_555
A
CD
201
B
CD
CD
1_555
A
HIS
144
A
NE2
HIS
148
1_555
92.1
A
GLU
105
A
OE1
GLU
109
1_555
A
CD
201
B
CD
CD
1_555
A
HIS
144
A
NE2
HIS
148
1_555
68.6
A
HIS
99
A
NE2
HIS
103
1_555
A
CD
201
B
CD
CD
1_555
A
HOH
301
E
O
HOH
1_555
91.0
A
HIS
101
A
NE2
HIS
105
1_555
A
CD
201
B
CD
CD
1_555
A
HOH
301
E
O
HOH
1_555
168.3
A
GLU
105
A
OE1
GLU
109
1_555
A
CD
201
B
CD
CD
1_555
A
HOH
301
E
O
HOH
1_555
96.9
A
HIS
144
A
NE2
HIS
148
1_555
A
CD
201
B
CD
CD
1_555
A
HOH
301
E
O
HOH
1_555
99.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
13
A
O
ILE
17
A
N
ILE
4
A
N
ILE
8
A
N
GLN
3
A
N
GLN
7
A
O
GLU
129
A
O
GLU
133
A
O
PHE
126
A
O
PHE
130
A
N
ILE
118
A
N
ILE
122
A
N
ALA
117
A
N
ALA
121
A
O
TYR
145
A
O
TYR
149
A
N
GLU
31
A
N
GLU
35
A
O
LEU
135
A
O
LEU
139
A
O
ASP
134
A
O
ASP
138
A
N
ILE
109
A
N
ILE
113
A
N
VAL
110
A
N
VAL
114
A
O
VAL
155
A
O
VAL
159
A
O
PHE
160
A
O
PHE
164
A
N
ALA
75
A
N
ALA
79
1
A
CG
GLU
8
A
CG
GLU
12
1
Y
1
A
CD
GLU
8
A
CD
GLU
12
1
Y
1
A
OE1
GLU
8
A
OE1
GLU
12
1
Y
1
A
OE2
GLU
8
A
OE2
GLU
12
1
Y
1
A
ASN
141
73.91
-2.12
30.418
1.14
0.00
7.51
-26.62
-0.00
25.48
0.945
0.902
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.22570
0.17605
0.17848
2.61
19.85
251
5103
5103
4.7
84.74
17.321
0.200
RANDOM
1
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
0.071
0.80
0.80
1.20
1vr3
MAXIMUM LIKELIHOOD
MASK
2.61
19.85
32
1434
3
0
1399
0.013
0.019
1430
0.001
0.020
1346
1.539
1.936
1941
0.845
3.000
3092
7.150
5.000
173
32.598
24.667
75
17.967
15.000
241
16.497
15.000
8
0.087
0.200
216
0.007
0.020
1634
0.001
0.020
338
0.328
0.267
2.672
17
325
325
20
76.68
40.41
2.6
50.0
4QGL
5354
5354
0.0
-3.0
0.111
0.111
1
11.987
2.3
85.6
0.511
2.6
2.64
2.390
250
0.511
1
2.2
85.6
phasing
HKL-3000
phasing
MOLREP
refinement
REFMAC
5.7.0029
data reduction
HKL-3000
data scaling
HKL-3000
Acireductone dioxygenase from Bacillus anthracis with three cadmium ions
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
A
ASN
15
A
ASN
19
HELX_P
A
GLU
26
A
GLU
30
1
1
12
A
ASN
34
A
ASN
38
HELX_P
A
LEU
38
A
LEU
42
5
2
5
A
PRO
39
A
PRO
43
HELX_P
A
ASN
43
A
ASN
47
5
3
5
A
THR
49
A
THR
53
HELX_P
A
PHE
60
A
PHE
64
1
4
12
A
PHE
60
A
PHE
64
HELX_P
A
GLY
72
A
GLY
76
1
5
13
A
ASN
87
A
ASN
91
HELX_P
A
ILE
93
A
ILE
97
1
6
7
A
THR
162
A
THR
166
HELX_P
A
VAL
167
A
VAL
171
5
7
6
metalc
2.127
A
GLY
-3
A
O
GLY
1
1_555
A
CD
202
C
CD
CD
1_555
metalc
2.358
A
HIS
99
A
NE2
HIS
103
1_555
A
CD
201
B
CD
CD
1_555
metalc
2.277
A
HIS
101
A
NE2
HIS
105
1_555
A
CD
201
B
CD
CD
1_555
metalc
2.276
A
GLU
105
A
OE1
GLU
109
1_555
A
CD
201
B
CD
CD
1_555
metalc
2.287
A
GLU
105
A
OE2
GLU
109
1_555
A
CD
203
D
CD
CD
1_555
metalc
2.655
A
HIS
113
A
NE2
HIS
117
1_555
A
CD
202
C
CD
CD
1_555
metalc
2.311
A
GLU
131
A
OE2
GLU
135
1_555
A
CD
202
C
CD
CD
1_555
metalc
2.377
A
GLU
131
A
OE1
GLU
135
1_555
A
CD
202
C
CD
CD
1_555
metalc
2.600
A
HIS
144
A
NE2
HIS
148
1_555
A
CD
201
B
CD
CD
1_555
metalc
2.350
A
CD
201
B
CD
CD
1_555
A
HOH
301
E
O
HOH
1_555
OXIDOREDUCTASE
Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, RmlC-like cupin, Oxidoreductase, Iron Binding, 1, 2-dihydroxy-5-(methylthio)pent-1-en-3-one dioxygenase
MTND_BACAN
UNP
1
1
Q81MI9
MAQIRIHEVNTRIENEVKVSKFLQEEGVLYEKWNISKLPPHLNENYSLTDENKAEILAVFSKEIADVSARRGYKAHDVIS
LSNSTPNLDELLINFQKEHHHTDDEVRFIVSGHGIFAIEGKDGTFFDVELEPGDLISVPENARHYFTLQDDRQVVAIRIF
VTTEGWVPIY
1
170
4QGL
1
170
Q81MI9
A
1
5
174
1
expression tag
GLY
-3
4QGL
A
Q81MI9
UNP
1
1
expression tag
ALA
-2
4QGL
A
Q81MI9
UNP
2
1
expression tag
ALA
-1
4QGL
A
Q81MI9
UNP
3
1
expression tag
ALA
0
4QGL
A
Q81MI9
UNP
4
5
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
12
A
ARG
16
A
ILE
13
A
ILE
17
A
GLN
3
A
GLN
7
A
ILE
6
A
ILE
10
A
PHE
125
A
PHE
129
A
LEU
130
A
LEU
134
A
GLY
114
A
GLY
118
A
GLU
119
A
GLU
123
A
HIS
144
A
HIS
148
A
THR
147
A
THR
151
A
LEU
29
A
LEU
33
A
LYS
32
A
LYS
36
A
ASP
134
A
ASP
138
A
VAL
138
A
VAL
142
A
GLU
105
A
GLU
109
A
GLY
112
A
GLY
116
A
VAL
154
A
VAL
158
A
PHE
160
A
PHE
164
A
ALA
75
A
ALA
79
A
LEU
81
A
LEU
85
BINDING SITE FOR RESIDUE CD A 201
A
CD
201
Software
5
BINDING SITE FOR RESIDUE CD A 202
A
CD
202
Software
4
BINDING SITE FOR RESIDUE CD A 203
A
CD
203
Software
2
A
HIS
99
A
HIS
103
5
1_555
A
HIS
101
A
HIS
105
5
1_555
A
GLU
105
A
GLU
109
5
1_555
A
HIS
144
A
HIS
148
5
1_555
A
HOH
301
E
HOH
5
1_555
A
GLY
-3
A
GLY
1
4
1_555
A
GLU
25
A
GLU
29
4
4_556
A
HIS
113
A
HIS
117
4
1_555
A
GLU
131
A
GLU
135
4
1_555
A
GLU
105
A
GLU
109
2
1_555
A
HOH
301
E
HOH
2
1_555
5
C 1 2 1