0.014273 0.008241 0.000000 -0.000000 0.016482 0.000000 0.000000 -0.000000 0.009832 0.00000 0.00000 0.00000 Skalova, T. Blaha, J. Duskova, J. Koval, T. Stransky, J. Hasek, J. Vanek, O. Dohnalek, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 70.060 70.060 101.710 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 R C N 231 R C N 232 R C N 233 S C N 234 R C N 235 N C N 236 N C N 237 N C N 238 N N N 239 N O N 240 N O N 241 N O N 242 N O N 243 N O N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C N 305 N O N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 R C N 319 N O N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N N Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C N 387 N C N 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing Y 259 N doub Y 260 N sing Y 261 N sing N 262 N sing Y 263 N doub N 264 N sing Y 265 N doub N 266 N sing Y 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing Y 328 N doub Y 329 N sing Y 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N sing Y 337 N doub N 338 N sing Y 339 N doub N 340 N sing Y 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing Y 356 N doub Y 357 N sing Y 358 N sing N 359 N sing Y 360 N doub N 361 N sing Y 362 N doub N 363 N sing Y 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 71 578 591 10.1107/S1399004714027928 25760607 Four crystal structures of human LLT1, a ligand of human NKR-P1, in varied glycosylation and oligomerization states 2015 10.2210/pdb4qkj/pdb pdb_00004qkj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Si Mirror, double crystal Si monochromator, Rh mirror CCD 2011-11-24 MARMOSAIC 225 mm CCD Si(111) double crystal SINGLE WAVELENGTH M x-ray 1 0.9184 1.0 14.1 BESSY 0.9184 SYNCHROTRON BESSY BEAMLINE 14.1 15692.363 C-type lectin domain family 2 member D extracellular part, UNP residues 72-191 H176C 1 man polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 18.015 water 15 nat water Lectin-like NK cell receptor, Lectin-like transcript 1, LLT-1, Osteoclast inhibitory lectin no no ITGQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQELNFLLRYKGPSDHWIGLSREQGQPWKWING TEWTRQFPILGAGECAYLNDKGASSARCYTERKWICSKSDIHVGTKHHHHHHHHG ITGQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQELNFLLRYKGPSDHWIGLSREQGQPWKWING TEWTRQFPILGAGECAYLNDKGASSARCYTERKWICSKSDIHVGTKHHHHHHHHG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human protein secreted into medium human sample CLAX, CLEC2B, CLEC2D, LLT1, OCIL 9606 Homo sapiens HEK293S GnTI- 9606 HOMO SAPIENS plasmid pTT28 1 2.30 46.43 VAPOR DIFFUSION, HANGING DROP 4.2 40%(v/v) PEG300 and 0.1M citrate phosphate buffer, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 288K 288 software citation_author chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_ref_seq_dif struct_site struct_site_gen chem_comp entity_src_gen chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Database references Refinement description Data collection Database references Data collection Database references Derived calculations Structure summary Source and taxonomy Structure summary Data collection Database references Refinement description 1 0 2015-03-11 1 1 2016-01-27 1 2 2017-11-22 1 3 2018-06-20 1 4 2020-07-29 1 5 2021-06-02 1 6 2023-11-08 _citation_author.name _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_ref_seq_dif.details _chem_comp.pdbx_synonyms _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_strain _database_2.pdbx_DOI _database_2.pdbx_database_accession DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc RCSB Y PDBJ 2014-06-06 REL REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose HOH water 3HUP PDB experimental model NAG 511 2 NAG NAG 301 A HOH 1 3 HOH HOH 401 A HOH 2 3 HOH HOH 402 A HOH 3 3 HOH HOH 403 A HOH 4 3 HOH HOH 404 A HOH 5 3 HOH HOH 405 A HOH 6 3 HOH HOH 406 A HOH 7 3 HOH HOH 407 A HOH 8 3 HOH HOH 408 A HOH 9 3 HOH HOH 409 A HOH 10 3 HOH HOH 410 A HOH 11 3 HOH HOH 411 A HOH 12 3 HOH HOH 412 A HOH 13 3 HOH HOH 413 A HOH 14 3 HOH HOH 414 A HOH 15 3 HOH HOH 415 A n 1 69 A n 2 70 A n 3 71 A n 4 72 A n 5 73 A ALA 74 n 6 ALA 74 A CYS 75 n 7 CYS 75 A PRO 76 n 8 PRO 76 A GLU 77 n 9 GLU 77 A SER 78 n 10 SER 78 A TRP 79 n 11 TRP 79 A ILE 80 n 12 ILE 80 A GLY 81 n 13 GLY 81 A PHE 82 n 14 PHE 82 A GLN 83 n 15 GLN 83 A ARG 84 n 16 ARG 84 A LYS 85 n 17 LYS 85 A CYS 86 n 18 CYS 86 A PHE 87 n 19 PHE 87 A TYR 88 n 20 TYR 88 A PHE 89 n 21 PHE 89 A SER 90 n 22 SER 90 A ASP 91 n 23 ASP 91 A ASP 92 n 24 ASP 92 A THR 93 n 25 THR 93 A LYS 94 n 26 LYS 94 A ASN 95 n 27 ASN 95 A TRP 96 n 28 TRP 96 A THR 97 n 29 THR 97 A SER 98 n 30 SER 98 A SER 99 n 31 SER 99 A GLN 100 n 32 GLN 100 A ARG 101 n 33 ARG 101 A PHE 102 n 34 PHE 102 A CYS 103 n 35 CYS 103 A ASP 104 n 36 ASP 104 A SER 105 n 37 SER 105 A GLN 106 n 38 GLN 106 A ASP 107 n 39 ASP 107 A ALA 108 n 40 ALA 108 A ASP 109 n 41 ASP 109 A LEU 110 n 42 LEU 110 A ALA 111 n 43 ALA 111 A GLN 112 n 44 GLN 112 A VAL 113 n 45 VAL 113 A GLU 114 n 46 GLU 114 A SER 115 n 47 SER 115 A PHE 116 n 48 PHE 116 A GLN 117 n 49 GLN 117 A GLU 118 n 50 GLU 118 A LEU 119 n 51 LEU 119 A ASN 120 n 52 ASN 120 A PHE 121 n 53 PHE 121 A LEU 122 n 54 LEU 122 A LEU 123 n 55 LEU 123 A ARG 124 n 56 ARG 124 A TYR 125 n 57 TYR 125 A LYS 126 n 58 LYS 126 A GLY 127 n 59 GLY 127 A PRO 128 n 60 PRO 128 A SER 129 n 61 SER 129 A ASP 130 n 62 ASP 130 A HIS 131 n 63 HIS 131 A TRP 132 n 64 TRP 132 A ILE 133 n 65 ILE 133 A GLY 134 n 66 GLY 134 A LEU 135 n 67 LEU 135 A SER 136 n 68 SER 136 A ARG 137 n 69 ARG 137 A GLU 138 n 70 GLU 138 A GLN 139 n 71 GLN 139 A GLY 140 n 72 GLY 140 A GLN 141 n 73 GLN 141 A PRO 142 n 74 PRO 142 A TRP 143 n 75 TRP 143 A LYS 144 n 76 LYS 144 A TRP 145 n 77 TRP 145 A ILE 146 n 78 ILE 146 A ASN 147 n 79 ASN 147 A GLY 148 n 80 GLY 148 A THR 149 n 81 THR 149 A GLU 150 n 82 GLU 150 A TRP 151 n 83 TRP 151 A THR 152 n 84 THR 152 A ARG 153 n 85 ARG 153 A GLN 154 n 86 GLN 154 A PHE 155 n 87 PHE 155 A PRO 156 n 88 PRO 156 A ILE 157 n 89 ILE 157 A LEU 158 n 90 LEU 158 A GLY 159 n 91 GLY 159 A ALA 160 n 92 ALA 160 A GLY 161 n 93 GLY 161 A GLU 162 n 94 GLU 162 A CYS 163 n 95 CYS 163 A ALA 164 n 96 ALA 164 A TYR 165 n 97 TYR 165 A LEU 166 n 98 LEU 166 A ASN 167 n 99 ASN 167 A ASP 168 n 100 ASP 168 A LYS 169 n 101 LYS 169 A GLY 170 n 102 GLY 170 A ALA 171 n 103 ALA 171 A SER 172 n 104 SER 172 A SER 173 n 105 SER 173 A ALA 174 n 106 ALA 174 A ARG 175 n 107 ARG 175 A CYS 176 n 108 CYS 176 A TYR 177 n 109 TYR 177 A THR 178 n 110 THR 178 A GLU 179 n 111 GLU 179 A ARG 180 n 112 ARG 180 A LYS 181 n 113 LYS 181 A TRP 182 n 114 TRP 182 A ILE 183 n 115 ILE 183 A CYS 184 n 116 CYS 184 A SER 185 n 117 SER 185 A LYS 186 n 118 LYS 186 A SER 187 n 119 SER 187 A ASP 188 n 120 ASP 188 A n 121 189 A n 122 190 A n 123 191 A n 124 192 A n 125 193 A n 126 194 A n 127 195 A n 128 196 A n 129 197 A n 130 198 A n 131 199 A n 132 200 A n 133 201 A n 134 202 A n 135 203 A author_defined_assembly 2 dimeric software_defined_assembly PISA 1 monomeric A ASN 95 GLYCOSYLATION SITE A ASN 27 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_555 x,x-y,-z+1/2 crystal symmetry operation 0.0000000000 0.0000000000 50.8550000000 A N ILE 80 A N ILE 12 A O PHE 87 A O PHE 19 A N TYR 88 A N TYR 20 A O CYS 184 A O CYS 116 A O LYS 181 A O LYS 113 A N TRP 132 A N TRP 64 A N SER 136 A N SER 68 A O LYS 144 A O LYS 76 A N ASP 109 A N ASP 41 A O SER 185 A O SER 117 A O LYS 181 A O LYS 113 A N TRP 132 A N TRP 64 A N HIS 131 A N HIS 63 A O LEU 166 A O LEU 98 A N TYR 165 A N TYR 97 A O SER 172 A O SER 104 1 A ILE 69 A ILE 1 1 Y 1 A THR 70 A THR 2 1 Y 1 A GLY 71 A GLY 3 1 Y 1 A GLN 72 A GLN 4 1 Y 1 A ALA 73 A ALA 5 1 Y 1 A ILE 189 A ILE 121 1 Y 1 A HIS 190 A HIS 122 1 Y 1 A VAL 191 A VAL 123 1 Y 1 A GLY 192 A GLY 124 1 Y 1 A THR 193 A THR 125 1 Y 1 A LYS 194 A LYS 126 1 Y 1 A HIS 195 A HIS 127 1 Y 1 A HIS 196 A HIS 128 1 Y 1 A HIS 197 A HIS 129 1 Y 1 A HIS 198 A HIS 130 1 Y 1 A HIS 199 A HIS 131 1 Y 1 A HIS 200 A HIS 132 1 Y 1 A HIS 201 A HIS 133 1 Y 1 A HIS 202 A HIS 134 1 Y 1 A GLY 203 A GLY 135 1 Y 1 A A O OE1 GLU GLN 114 154 2.08 1 A A O NE2 LEU GLN 110 112 2.19 1 A A GLY GLN 140 141 -149.50 1 8.58 0.90 118.30 126.88 A A A CB CG OD1 ASP ASP ASP 130 130 130 N 1 -5.62 0.90 118.30 112.68 A A A CB CG OD2 ASP ASP ASP 130 130 130 N 1 A SER 78 72.21 -12.40 1 A SER 105 -36.38 -24.87 1 A ALA 111 -33.60 133.97 1 A ARG 153 -69.86 53.06 1 A ASN 167 -90.02 -149.72 1 A LYS 186 -160.53 -158.34 40.052 -0.16 -0.08 0.00 -0.16 0.00 0.53 0.894 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2978 0.22133 0.23022 0.23022 2.75 39.0 223 4186 4186 99.52 11.069 0.220 RANDOM 1 throughout (except for the last cycle) 0 MOLECULAR REPLACEMENT 1.171 0.80 0.80 1.20 3HUP CCP4 STEREOCHEMISTRY LIBRARY, VERSION 6.4.0 MASK 2.75 39.0 15 974 14 0 945 0.018 0.020 993 0.006 0.020 860 1.967 1.919 1344 0.971 3.000 1977 9.828 5.000 114 40.451 23.774 53 21.562 15.000 158 14.554 15.000 7 0.108 0.200 129 0.008 0.020 1134 0.001 0.020 259 3.959 3.878 459 3.957 3.868 458 6.515 5.788 572 6.510 5.799 573 3.780 4.165 534 3.777 4.165 534 6.070 6.131 773 10.195 31.200 1222 10.192 31.241 1223 0.314 0.293 2.822 12 293 281 20 99.66 66.1 2.7 39.0 4QKJ 4431 4431 0 -3.0 0.093 1 16.2 4.3 99.5 0.757 2.70 2.76 2.0 273 1 4.4 99.3 data collection MxCuBE phasing BALBES refinement REFMAC 5.8.0049 data reduction HKL-2000 data scaling HKL-2000 data scaling Sawaya et al. Glycosylated form of human LLT1, a ligand for NKR-P1, in this structure forming hexamers 1 N N 2 N N 3 N N A ASN 95 A ASN 27 HELX_P A GLN 106 A GLN 38 1 1 12 A SER 115 A SER 47 HELX_P A GLY 127 A GLY 59 1 2 13 disulf 2.002 A CYS 75 A SG CYS 7 1_555 A CYS 86 A SG CYS 18 1_555 disulf 2.015 A CYS 103 A SG CYS 35 1_555 A CYS 184 A SG CYS 116 1_555 disulf 2.016 A CYS 163 A SG CYS 95 1_555 A CYS 176 A SG CYS 108 1_555 covale 1.458 one N-Glycosylation A ASN 95 A ND2 ASN 27 1_555 A NAG 301 B C1 NAG 1_555 IMMUNE SYSTEM C-type lectin like fold, ligand for human receptor NKR-P1, GlcNAc2Man5 glycosylation, anchored in membrane on cell surface, IMMUNE SYSTEM CLC2D_HUMAN UNP 1 72 Q9UHP7 QAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQELNFLLRYKGPSDHWIGLSREQGQPWKWINGTEW TRQFPILGAGECAYLNDKGASSARHYTERKWICSKSDIHV 72 191 4QKJ 72 191 Q9UHP7 A 1 4 123 1 expression tag ILE 69 4QKJ A Q9UHP7 UNP 1 1 expression tag THR 70 4QKJ A Q9UHP7 UNP 2 1 expression tag GLY 71 4QKJ A Q9UHP7 UNP 3 1 HIS engineered mutation CYS 176 4QKJ A Q9UHP7 UNP 176 108 1 expression tag GLY 192 4QKJ A Q9UHP7 UNP 124 1 expression tag THR 193 4QKJ A Q9UHP7 UNP 125 1 expression tag LYS 194 4QKJ A Q9UHP7 UNP 126 1 expression tag HIS 195 4QKJ A Q9UHP7 UNP 127 1 expression tag HIS 196 4QKJ A Q9UHP7 UNP 128 1 expression tag HIS 197 4QKJ A Q9UHP7 UNP 129 1 expression tag HIS 198 4QKJ A Q9UHP7 UNP 130 1 expression tag HIS 199 4QKJ A Q9UHP7 UNP 131 1 expression tag HIS 200 4QKJ A Q9UHP7 UNP 132 1 expression tag HIS 201 4QKJ A Q9UHP7 UNP 133 1 expression tag HIS 202 4QKJ A Q9UHP7 UNP 134 1 expression tag GLY 203 4QKJ A Q9UHP7 UNP 135 5 5 anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A ILE 80 A ILE 12 A GLY 81 A GLY 13 A CYS 86 A CYS 18 A PHE 89 A PHE 21 A LYS 181 A LYS 113 A LYS 186 A LYS 118 A HIS 131 A HIS 63 A SER 136 A SER 68 A LYS 144 A LYS 76 A TRP 145 A TRP 77 A ASP 109 A ASP 41 A LEU 110 A LEU 42 A LYS 181 A LYS 113 A LYS 186 A LYS 118 A HIS 131 A HIS 63 A SER 136 A SER 68 A CYS 163 A CYS 95 A LEU 166 A LEU 98 A ALA 171 A ALA 103 A ALA 174 A ALA 106 182 P 63 2 2