0.028321 0.000000 0.000000 0.000000 0.017358 0.000000 0.000000 0.000000 0.016393 0.00000 0.00000 0.00000 Kumar, S. Yernool, D.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 35.310 57.610 61.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Crystal Structure of Gaf Domain of Potassium Sensor Histidine Kinase Kdpd from Escherichia Coli 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 U33S UNDULATOR CCD 2012-12-14 MARMOSAIC 300 mm CCD SI(111) SINGLE WAVELENGTH M x-ray 1 0.97932 1.0 21-ID-D APS 0.97932 SYNCHROTRON APS BEAMLINE 21-ID-D 16514.131 Sensor protein KdpD 2.7.13.3 1 man polymer 18.015 water 99 nat water Sensor protein KdpD no yes GA(MSE)DLYE(MSE)SKALAVGRSPQDIAATSEQFIASTFHARSQVLLPDDNGKLQPLTHPQG(MSE)TPWDDAIAQWS FDKGLPAGAGTDTLPGVPYQILPLKSGEKTYGLVVVEPGNLRQL(MSE)IPEQQRLLETFTLLVANALERLTKLAAALEH HHHHH GAMDLYEMSKALAVGRSPQDIAATSEQFIASTFHARSQVLLPDDNGKLQPLTHPQGMTPWDDAIAQWSFDKGLPAGAGTD TLPGVPYQILPLKSGEKTYGLVVVEPGNLRQLMIPEQQRLLETFTLLVANALERLTKLAAALEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n K12 sample b0695, ECDH1ME8569_0654, EcDH1_2941, JW0683, kdpD 83333 Escherichia coli 562 ESCHERICHIA COLI C43/90 PLASMID PHISP1 1 1.88 34.52 30-35% PEG 3350, 0.1M BIS-TRIS, pH 6.0-6.5 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K repository Initial release 1 0 2015-09-02 RCSB Y RCSB 2014-06-24 REL REL HOH water HOH 701 2 HOH HOH 701 A HOH 702 2 HOH HOH 702 A HOH 703 2 HOH HOH 703 A HOH 704 2 HOH HOH 704 A HOH 705 2 HOH HOH 705 A HOH 706 2 HOH HOH 706 A HOH 707 2 HOH HOH 707 A HOH 708 2 HOH HOH 708 A HOH 709 2 HOH HOH 709 A HOH 710 2 HOH HOH 710 A HOH 711 2 HOH HOH 711 A HOH 712 2 HOH HOH 712 A HOH 713 2 HOH HOH 713 A HOH 714 2 HOH HOH 714 A HOH 715 2 HOH HOH 715 A HOH 716 2 HOH HOH 716 A HOH 717 2 HOH HOH 717 A HOH 718 2 HOH HOH 718 A HOH 719 2 HOH HOH 719 A HOH 720 2 HOH HOH 720 A HOH 721 2 HOH HOH 721 A HOH 722 2 HOH HOH 722 A HOH 723 2 HOH HOH 723 A HOH 724 2 HOH HOH 724 A HOH 725 2 HOH HOH 725 A HOH 726 2 HOH HOH 726 A HOH 727 2 HOH HOH 727 A HOH 728 2 HOH HOH 728 A HOH 729 2 HOH HOH 729 A HOH 730 2 HOH HOH 730 A HOH 731 2 HOH HOH 731 A HOH 732 2 HOH HOH 732 A HOH 733 2 HOH HOH 733 A HOH 734 2 HOH HOH 734 A HOH 735 2 HOH HOH 735 A HOH 736 2 HOH HOH 736 A HOH 737 2 HOH HOH 737 A HOH 738 2 HOH HOH 738 A HOH 739 2 HOH HOH 739 A HOH 740 2 HOH HOH 740 A HOH 741 2 HOH HOH 741 A HOH 742 2 HOH HOH 742 A HOH 743 2 HOH HOH 743 A HOH 744 2 HOH HOH 744 A HOH 745 2 HOH HOH 745 A HOH 746 2 HOH HOH 746 A HOH 747 2 HOH HOH 747 A HOH 748 2 HOH HOH 748 A HOH 749 2 HOH HOH 749 A HOH 750 2 HOH HOH 750 A HOH 751 2 HOH HOH 751 A HOH 752 2 HOH HOH 752 A HOH 753 2 HOH HOH 753 A HOH 754 2 HOH HOH 754 A HOH 755 2 HOH HOH 755 A HOH 756 2 HOH HOH 756 A HOH 757 2 HOH HOH 757 A HOH 758 2 HOH HOH 758 A HOH 759 2 HOH HOH 759 A HOH 760 2 HOH HOH 760 A HOH 761 2 HOH HOH 761 A HOH 762 2 HOH HOH 762 A HOH 763 2 HOH HOH 763 A HOH 764 2 HOH HOH 764 A HOH 765 2 HOH HOH 765 A HOH 766 2 HOH HOH 766 A HOH 767 2 HOH HOH 767 A HOH 768 2 HOH HOH 768 A HOH 769 2 HOH HOH 769 A HOH 770 2 HOH HOH 770 A HOH 771 2 HOH HOH 771 A HOH 772 2 HOH HOH 772 A HOH 773 2 HOH HOH 773 A HOH 774 2 HOH HOH 774 A HOH 775 2 HOH HOH 775 A HOH 776 2 HOH HOH 776 A HOH 777 2 HOH HOH 777 A HOH 778 2 HOH HOH 778 A HOH 779 2 HOH HOH 779 A HOH 780 2 HOH HOH 780 A HOH 781 2 HOH HOH 781 A HOH 782 2 HOH HOH 782 A HOH 783 2 HOH HOH 783 A HOH 784 2 HOH HOH 784 A HOH 785 2 HOH HOH 785 A HOH 786 2 HOH HOH 786 A HOH 787 2 HOH HOH 787 A HOH 788 2 HOH HOH 788 A HOH 789 2 HOH HOH 789 A HOH 790 2 HOH HOH 790 A HOH 791 2 HOH HOH 791 A HOH 792 2 HOH HOH 792 A HOH 793 2 HOH HOH 793 A HOH 794 2 HOH HOH 794 A HOH 795 2 HOH HOH 795 A HOH 796 2 HOH HOH 796 A HOH 797 2 HOH HOH 797 A HOH 798 2 HOH HOH 798 A HOH 799 2 HOH HOH 799 A GLY -3 n 1 GLY -3 A ALA -2 n 2 ALA -2 A MSE -1 n 3 MSE -1 A ASP 0 n 4 ASP 0 A LEU 515 n 5 LEU 515 A TYR 516 n 6 TYR 516 A GLU 517 n 7 GLU 517 A MSE 518 n 8 MSE 518 A SER 519 n 9 SER 519 A LYS 520 n 10 LYS 520 A ALA 521 n 11 ALA 521 A LEU 522 n 12 LEU 522 A ALA 523 n 13 ALA 523 A VAL 524 n 14 VAL 524 A GLY 525 n 15 GLY 525 A ARG 526 n 16 ARG 526 A SER 527 n 17 SER 527 A PRO 528 n 18 PRO 528 A GLN 529 n 19 GLN 529 A ASP 530 n 20 ASP 530 A ILE 531 n 21 ILE 531 A ALA 532 n 22 ALA 532 A ALA 533 n 23 ALA 533 A THR 534 n 24 THR 534 A SER 535 n 25 SER 535 A GLU 536 n 26 GLU 536 A GLN 537 n 27 GLN 537 A PHE 538 n 28 PHE 538 A ILE 539 n 29 ILE 539 A ALA 540 n 30 ALA 540 A SER 541 n 31 SER 541 A THR 542 n 32 THR 542 A PHE 543 n 33 PHE 543 A HIS 544 n 34 HIS 544 A ALA 545 n 35 ALA 545 A ARG 546 n 36 ARG 546 A SER 547 n 37 SER 547 A GLN 548 n 38 GLN 548 A VAL 549 n 39 VAL 549 A LEU 550 n 40 LEU 550 A LEU 551 n 41 LEU 551 A PRO 552 n 42 PRO 552 A ASP 553 n 43 ASP 553 A ASP 554 n 44 ASP 554 A ASN 555 n 45 ASN 555 A GLY 556 n 46 GLY 556 A LYS 557 n 47 LYS 557 A LEU 558 n 48 LEU 558 A GLN 559 n 49 GLN 559 A PRO 560 n 50 PRO 560 A LEU 561 n 51 LEU 561 A THR 562 n 52 THR 562 A HIS 563 n 53 HIS 563 A PRO 564 n 54 PRO 564 A GLN 565 n 55 GLN 565 A GLY 566 n 56 GLY 566 A MSE 567 n 57 MSE 567 A THR 568 n 58 THR 568 A PRO 569 n 59 PRO 569 A TRP 570 n 60 TRP 570 A ASP 571 n 61 ASP 571 A ASP 572 n 62 ASP 572 A ALA 573 n 63 ALA 573 A ILE 574 n 64 ILE 574 A ALA 575 n 65 ALA 575 A GLN 576 n 66 GLN 576 A TRP 577 n 67 TRP 577 A SER 578 n 68 SER 578 A PHE 579 n 69 PHE 579 A ASP 580 n 70 ASP 580 A LYS 581 n 71 LYS 581 A GLY 582 n 72 GLY 582 A LEU 583 n 73 LEU 583 A PRO 584 n 74 PRO 584 A ALA 585 n 75 ALA 585 A GLY 586 n 76 GLY 586 A ALA 587 n 77 ALA 587 A GLY 588 n 78 GLY 588 A THR 589 n 79 THR 589 A ASP 590 n 80 ASP 590 A THR 591 n 81 THR 591 A LEU 592 n 82 LEU 592 A PRO 593 n 83 PRO 593 A GLY 594 n 84 GLY 594 A VAL 595 n 85 VAL 595 A PRO 596 n 86 PRO 596 A TYR 597 n 87 TYR 597 A GLN 598 n 88 GLN 598 A ILE 599 n 89 ILE 599 A LEU 600 n 90 LEU 600 A PRO 601 n 91 PRO 601 A LEU 602 n 92 LEU 602 A LYS 603 n 93 LYS 603 A SER 604 n 94 SER 604 A GLY 605 n 95 GLY 605 A GLU 606 n 96 GLU 606 A LYS 607 n 97 LYS 607 A THR 608 n 98 THR 608 A TYR 609 n 99 TYR 609 A GLY 610 n 100 GLY 610 A LEU 611 n 101 LEU 611 A VAL 612 n 102 VAL 612 A VAL 613 n 103 VAL 613 A VAL 614 n 104 VAL 614 A GLU 615 n 105 GLU 615 A PRO 616 n 106 PRO 616 A GLY 617 n 107 GLY 617 A ASN 618 n 108 ASN 618 A LEU 619 n 109 LEU 619 A ARG 620 n 110 ARG 620 A GLN 621 n 111 GLN 621 A LEU 622 n 112 LEU 622 A MSE 623 n 113 MSE 623 A ILE 624 n 114 ILE 624 A PRO 625 n 115 PRO 625 A GLU 626 n 116 GLU 626 A GLN 627 n 117 GLN 627 A GLN 628 n 118 GLN 628 A ARG 629 n 119 ARG 629 A LEU 630 n 120 LEU 630 A LEU 631 n 121 LEU 631 A GLU 632 n 122 GLU 632 A THR 633 n 123 THR 633 A PHE 634 n 124 PHE 634 A THR 635 n 125 THR 635 A LEU 636 n 126 LEU 636 A LEU 637 n 127 LEU 637 A VAL 638 n 128 VAL 638 A ALA 639 n 129 ALA 639 A ASN 640 n 130 ASN 640 A ALA 641 n 131 ALA 641 A LEU 642 n 132 LEU 642 A GLU 643 n 133 GLU 643 A ARG 644 n 134 ARG 644 A LEU 645 n 135 LEU 645 A THR 646 n 136 THR 646 A LYS 647 n 137 LYS 647 A LEU 648 n 138 LEU 648 A ALA 649 n 139 ALA 649 A ALA 650 n 140 ALA 650 A ALA 651 n 141 ALA 651 A LEU 652 n 142 LEU 652 A n 143 653 A n 144 654 A n 145 655 A n 146 656 A n 147 657 A n 148 658 A n 149 659 A 2.3760 0.2309 0.3892 0.7566 1.6780 4.6001 -0.2711 -0.0035 0.0781 0.3377 -0.0711 0.4027 -0.2448 0.0445 0.1900 0.2854 0.0115 0.0545 0.1447 -0.0286 0.2389 refined 6.2256 27.3567 -77.0027 X-RAY DIFFRACTION 2.3586 -0.0934 0.6883 2.6914 -0.2170 3.1621 0.1188 -0.4628 -0.3495 0.3541 -0.0004 0.1439 0.2654 -0.2948 -0.0897 0.1870 -0.0199 0.0017 0.1975 0.0291 0.1464 refined 8.6257 9.0338 -74.7334 X-RAY DIFFRACTION 0.7851 -0.8079 -0.0824 1.5335 0.0816 1.8232 -0.0063 -0.0270 0.0199 0.0508 0.0249 -0.2666 0.0473 0.1848 -0.0109 0.0774 0.0044 -0.0055 0.1003 0.0030 0.1095 refined 15.4132 11.2590 -80.5862 X-RAY DIFFRACTION 6.6284 2.1238 -0.7956 3.8261 -0.7455 3.4475 0.2079 0.3228 -0.2826 -0.2540 -0.0851 -0.0373 0.2503 -0.2322 -0.0852 0.1047 0.0009 -0.0125 0.1594 0.0042 0.1120 refined 9.1852 14.3230 -93.8935 X-RAY DIFFRACTION 1.5508 -0.0790 -0.2069 2.0874 0.5776 7.2040 -0.0306 -0.2317 0.0176 0.4225 -0.0264 -0.1034 -0.4274 0.0351 0.0254 0.1532 0.0066 -0.0234 0.1336 0.0092 0.1242 refined 15.5275 23.4769 -75.7321 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 CHAIN A AND (RESID -3:542) X-RAY DIFFRACTION 2 CHAIN A AND (RESID 543:581) X-RAY DIFFRACTION 3 CHAIN A AND (RESID 582:616) X-RAY DIFFRACTION 4 CHAIN A AND (RESID 617:624) X-RAY DIFFRACTION 5 CHAIN A AND (RESID 625:652) author_and_software_defined_assembly PISA 2 dimeric 1760 -13 14090 A MSE -1 SELENOMETHIONINE A MSE 3 MET A MSE 518 SELENOMETHIONINE A MSE 8 MET A MSE 567 SELENOMETHIONINE A MSE 57 MET A MSE 623 SELENOMETHIONINE A MSE 113 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -x+1,-y+1,z crystal symmetry operation 35.3100000000 57.6100000000 0.0000000000 A O GLN 559 A O GLN 49 A N LEU 551 A N LEU 41 A N ARG 546 A N ARG 36 A O GLU 615 A O GLU 105 A O TYR 609 A O TYR 99 A N LEU 602 A N LEU 92 A O ILE 599 A O ILE 89 A N ALA 585 A N ALA 75 1 A GLU 653 A GLU 143 1 Y 1 A HIS 654 A HIS 144 1 Y 1 A HIS 655 A HIS 145 1 Y 1 A HIS 656 A HIS 146 1 Y 1 A HIS 657 A HIS 147 1 Y 1 A HIS 658 A HIS 148 1 Y 1 A HIS 659 A HIS 149 1 Y 1 A A O O HOH HOH 772 781 1.96 22.50 0.203 0.185 0.187 1.55 30.50 1881 18764 10.020 100.0 0.140 1 1.960 SAD 18.600 0.90 1.11 MLHL FLAT BULK SOLVENT MODEL 1.55 30.50 99 1179 0 0 1080 0.008 1103 1.210 1503 13.146 409 0.078 174 0.008 196 0.2579 0.2009 1.5898 145 1270 100.00 0.2309 0.2043 1.6366 153 1258 100.00 0.2409 0.1890 1.6894 133 1300 100.00 0.2089 0.1895 1.7498 142 1273 100.00 0.2251 0.1823 1.8199 139 1269 100.00 0.2154 0.1657 1.9027 141 1290 100.00 0.1927 0.1766 2.0030 141 1290 100.00 0.1802 0.1855 2.1284 146 1272 100.00 0.2052 0.1793 2.2927 142 1300 100.00 0.1843 0.1807 2.5234 148 1322 100.00 0.2349 0.1971 2.8883 147 1299 100.00 0.1966 0.1769 3.6379 147 1337 100.00 0.1891 0.1898 30.5059 157 1403 99.00 16.63 1.548 30.500 4QPR 18769 1 18.7500 14.400 1.55 1.59 1 model building PHENIX refinement PHENIX (PHENIX.REFINE: DEV_1230) data reduction MOSFLM data scaling SCALA phasing PHENIX Osmosensitive K+ channel signal transduction histidine kinase CRYSTAL STRUCTURE OF GAF DOMAIN of POTASSIUM SENSOR HISTIDINE KINASE KDPD FROM ESCHERICHIA COLI 1 N N 2 N N A MSE -1 A MSE 3 HELX_P A VAL 524 A VAL 14 1 1 12 A SER 527 A SER 17 HELX_P A HIS 544 A HIS 34 1 2 18 A ASP 571 A ASP 61 HELX_P A GLY 582 A GLY 72 1 3 12 A ASN 618 A ASN 108 HELX_P A MSE 623 A MSE 113 1 4 6 A ILE 624 A ILE 114 HELX_P A LEU 652 A LEU 142 1 5 29 covale 1.325 A ALA -2 A C ALA 2 1_555 A MSE -1 A N MSE 3 1_555 covale 1.326 A MSE -1 A C MSE 3 1_555 A ASP 0 A N ASP 4 1_555 covale 1.330 A GLU 517 A C GLU 7 1_555 A MSE 518 A N MSE 8 1_555 covale 1.331 A MSE 518 A C MSE 8 1_555 A SER 519 A N SER 9 1_555 covale 1.331 A GLY 566 A C GLY 56 1_555 A MSE 567 A N MSE 57 1_555 covale 1.331 A MSE 567 A C MSE 57 1_555 A THR 568 A N THR 58 1_555 covale 1.331 A LEU 622 A C LEU 112 1_555 A MSE 623 A N MSE 113 1_555 covale 1.329 A MSE 623 A C MSE 113 1_555 A ILE 624 A N ILE 114 1_555 TRANSFERASE TRANSFERASE A GLN 559 A GLN 49 1 A PRO 560 A PRO 50 -0.69 KDPD_ECOLI UNP 1 1 P21865 LYEMSKALAVGRSPQDIAATSEQFIASTFHARSQVLLPDDNGKLQPLTHPQGMTPWDDAIAQWSFDKGLPAGAGTDTLPG VPYQILPLKSGEKTYGLVVVEPGNLRQLMIPEQQRLLETFTLLVANALERLT 1 132 4QPR 515 646 P21865 A 1 5 136 1 EXPRESSION TAG GLY -3 4QPR A P21865 UNP 1 1 EXPRESSION TAG ALA -2 4QPR A P21865 UNP 2 1 EXPRESSION TAG MSE -1 4QPR A P21865 UNP 3 1 EXPRESSION TAG ASP 0 4QPR A P21865 UNP 4 1 EXPRESSION TAG LYS 647 4QPR A P21865 UNP 137 1 EXPRESSION TAG LEU 648 4QPR A P21865 UNP 138 1 EXPRESSION TAG ALA 649 4QPR A P21865 UNP 139 1 EXPRESSION TAG ALA 650 4QPR A P21865 UNP 140 1 EXPRESSION TAG ALA 651 4QPR A P21865 UNP 141 1 EXPRESSION TAG LEU 652 4QPR A P21865 UNP 142 1 EXPRESSION TAG GLU 653 4QPR A P21865 UNP 143 1 EXPRESSION TAG HIS 654 4QPR A P21865 UNP 144 1 EXPRESSION TAG HIS 655 4QPR A P21865 UNP 145 1 EXPRESSION TAG HIS 656 4QPR A P21865 UNP 146 1 EXPRESSION TAG HIS 657 4QPR A P21865 UNP 147 1 EXPRESSION TAG HIS 658 4QPR A P21865 UNP 148 1 EXPRESSION TAG HIS 659 4QPR A P21865 UNP 149 5 anti-parallel anti-parallel anti-parallel anti-parallel A LEU 558 A LEU 48 A GLN 559 A GLN 49 A ALA 545 A ALA 35 A PRO 552 A PRO 42 A LYS 607 A LYS 97 A PRO 616 A PRO 106 A GLN 598 A GLN 88 A SER 604 A SER 94 A ALA 585 A ALA 75 A GLY 586 A GLY 76 18 P 21 21 2