0.007163 0.004136 0.000000 0.000000 0.008272 0.000000 0.000000 0.000000 0.020137 0.00000 0.00000 0.00000 Huang, Z. Mohammadi, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.00 90.00 120.00 139.599 139.599 49.660 C35 H40 N8 O4 636.743 N-(4-{[3-(3,5-dimethoxyphenyl)-7-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]methyl}phenyl)propanamide non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Y 1 N C Y 2 N N Y 3 N C Y 4 N N Y 5 N C Y 6 N C N 7 N N N 8 N C N 9 N N N 10 N C N 11 N N Y 12 N C Y 13 N C Y 14 N C Y 15 N C Y 16 N C Y 17 N C N 18 N N N 19 N C N 20 N C N 21 N N N 22 N C N 23 N C N 24 N C Y 25 N C Y 26 N C Y 27 N C Y 28 N C Y 29 N C Y 30 N C N 31 N O N 32 N O N 33 N C N 34 N C N 35 N O N 36 N C Y 37 N C Y 38 N C Y 39 N C Y 40 N C Y 41 N C Y 42 N C N 43 N N N 44 N C N 45 N C N 46 N C N 47 N O N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N O N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N N N 102 S C N 103 N C N 104 N O N 105 N C N 106 N C N 107 N C N 108 N N N 109 N C N 110 N N N 111 N N N 112 N O N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 S C N 130 N C N 131 N O N 132 N C N 133 N C N 134 N O N 135 N N N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N N N 146 S C N 147 N C N 148 N O N 149 N C N 150 N C N 151 N O N 152 N O N 153 N O N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N N N 162 R C N 163 N C N 164 N O N 165 N C N 166 N S N 167 N O N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 N C N 180 N C N 181 N C N 182 N O N 183 N N N 184 N O N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N O N 203 N O N 204 N O N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N N N 215 N C N 216 N C N 217 N O N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N N N 225 S C N 226 N C N 227 N O N 228 N C Y 229 N C Y 230 N N Y 231 N C Y 232 N C Y 233 N N N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N N N 246 S C N 247 N C N 248 N O N 249 S C N 250 N C N 251 N C N 252 N C N 253 N O N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C N 272 N C N 273 N C N 274 N C N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N N N 290 S C N 291 N C N 292 N O N 293 N C N 294 N C N 295 N C N 296 N C N 297 N N N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 N C N 319 N C N 320 N S N 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C N 362 N C N 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N O N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N N N 389 S C N 390 N C N 391 N O N 392 R C N 393 N O N 394 N C N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N N N 406 S C N 407 N C N 408 N O N 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N N Y 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N N N 433 S C N 434 N C N 435 N O N 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C N 443 N O N 444 N O N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N N N 457 S C N 458 N C N 459 N O N 460 N C N 461 N C N 462 N C N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing Y 5 N doub Y 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing Y 12 N sing N 13 N sing N 14 N doub Y 15 N doub N 16 N sing N 17 N doub N 18 N sing Y 19 N doub Y 20 N sing Y 21 N doub Y 22 N sing Y 23 N sing Y 24 N doub Y 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing Y 30 N sing Y 31 N doub Y 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N doub N 37 N sing Y 38 N doub Y 39 N sing Y 40 N doub Y 41 N sing N 42 N sing Y 43 N doub Y 44 N sing N 45 N sing N 46 N sing N 47 N sing Y 48 N doub N 49 N sing Y 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N doub N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing Y 232 N sing Y 233 N doub Y 234 N doub N 235 N sing Y 236 N sing N 237 N sing Y 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N doub N 343 N sing Y 344 N doub N 345 N sing Y 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N doub N 403 N sing N 404 N sing N 405 N sing N 406 N sing Y 407 N doub Y 408 N sing Y 409 N sing N 410 N sing Y 411 N doub Y 412 N sing Y 413 N sing N 414 N sing Y 415 N sing Y 416 N doub N 417 N sing Y 418 N doub N 419 N sing Y 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N doub N 431 N sing N 432 N sing N 433 N sing N 434 N sing Y 435 N doub Y 436 N sing Y 437 N sing N 438 N sing Y 439 N doub N 440 N sing Y 441 N doub N 442 N sing Y 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N doub N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing US Acs Chem.Biol. 1554-8929 10 299 309 10.1021/cb500674s 25317566 DFG-out Mode of Inhibition by an Irreversible Type-1 Inhibitor Capable of Overcoming Gate-Keeper Mutations in FGF Receptors. 2015 10.2210/pdb4qq5/pdb pdb_00004qq5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2014-04-11 MAR CCD 165 mm Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 0.97947 1.0 X4C NSLS 0.97947 SYNCHROTRON NSLS BEAMLINE X4C 36173.598 Fibroblast growth factor receptor 4 2.7.10.1 Kinase domain of FGF Receptor 4 R669E, V550L 1 man polymer 636.743 N-(4-{[3-(3,5-dimethoxyphenyl)-7-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]methyl}phenyl)propanamide 1 syn non-polymer FGFR-4 no no MGSSHHHHHHSQDPLLAGLVSLDLPLDPLWEFPRDRLVLGKPLGEGCFGQVVRAEAFGMDPARPDQASTVAVKMLKDNAS DKDLADLVSEMEVMKLIGRHKNIINLLGVCTQEGPLYVILECAAKGNLREFLRARRPPGPDLSPDGPRSSEGPLSFPVLV SCAYQVARGMQYLESRKCIHRDLAARNVLVTEDNVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFDEVYTHQS DVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMDRPPHCPPELYGLMRECWHAAPSQRPTFKQLVEALDKVLLAV SEE MGSSHHHHHHSQDPLLAGLVSLDLPLDPLWEFPRDRLVLGKPLGEGCFGQVVRAEAFGMDPARPDQASTVAVKMLKDNAS DKDLADLVSEMEVMKLIGRHKNIINLLGVCTQEGPLYVILECAAKGNLREFLRARRPPGPDLSPDGPRSSEGPLSFPVLV SCAYQVARGMQYLESRKCIHRDLAARNVLVTEDNVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFDEVYTHQS DVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMDRPPHCPPELYGLMRECWHAAPSQRPTFKQLVEALDKVLLAV SEE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample FGFR4, JTK2, TKF 9606 Homo sapiens 562 Escherichia coli 1 2.57 52.22 VAPOR DIFFUSION, HANGING DROP 7.5 0.1 M HEPES, 1.0 to 1.2 M (NH4)2SO4, and 10 mM Yttrium (III) Chloride Hexahydrate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2014-10-29 1 1 2015-01-28 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2014-06-26 REL REL 37O N-(4-{[3-(3,5-dimethoxyphenyl)-7-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]methyl}phenyl)propanamide 2PSQ pdb entry 2PSQ PDB experimental model LIG 1 2 37O 37O 801 A n 1 436 A n 2 437 A n 3 438 A n 4 439 A n 5 440 A n 6 441 A n 7 442 A n 8 443 A n 9 444 A n 10 445 A n 11 446 A ALA 447 n 12 GLN 447 A ASP 448 n 13 ASP 448 A PRO 449 n 14 PRO 449 A LEU 450 n 15 LEU 450 A LEU 451 n 16 LEU 451 A ALA 452 n 17 ALA 452 A GLY 453 n 18 GLY 453 A LEU 454 n 19 LEU 454 A VAL 455 n 20 VAL 455 A SER 456 n 21 SER 456 A LEU 457 n 22 LEU 457 A ASP 458 n 23 ASP 458 A LEU 459 n 24 LEU 459 A PRO 460 n 25 PRO 460 A LEU 461 n 26 LEU 461 A ASP 462 n 27 ASP 462 A PRO 463 n 28 PRO 463 A LEU 464 n 29 LEU 464 A TRP 465 n 30 TRP 465 A GLU 466 n 31 GLU 466 A PHE 467 n 32 PHE 467 A PRO 468 n 33 PRO 468 A ARG 469 n 34 ARG 469 A ASP 470 n 35 ASP 470 A ARG 471 n 36 ARG 471 A LEU 472 n 37 LEU 472 A VAL 473 n 38 VAL 473 A LEU 474 n 39 LEU 474 A GLY 475 n 40 GLY 475 A LYS 476 n 41 LYS 476 A PRO 477 n 42 PRO 477 A LEU 478 n 43 LEU 478 A GLY 479 n 44 GLY 479 A GLU 480 n 45 GLU 480 A GLY 481 n 46 GLY 481 A CYS 482 n 47 CYS 482 A PHE 483 n 48 PHE 483 A GLY 484 n 49 GLY 484 A GLN 485 n 50 GLN 485 A VAL 486 n 51 VAL 486 A VAL 487 n 52 VAL 487 A ARG 488 n 53 ARG 488 A ALA 489 n 54 ALA 489 A GLU 490 n 55 GLU 490 A ALA 491 n 56 ALA 491 A PHE 492 n 57 PHE 492 A GLY 493 n 58 GLY 493 A MET 494 n 59 MET 494 A n 60 495 A n 61 496 A n 62 497 A n 63 498 A n 64 499 A ALA 500 n 65 ASP 500 A GLN 501 n 66 GLN 501 A ALA 502 n 67 ALA 502 A SER 503 n 68 SER 503 A THR 504 n 69 THR 504 A VAL 505 n 70 VAL 505 A ALA 506 n 71 ALA 506 A VAL 507 n 72 VAL 507 A LYS 508 n 73 LYS 508 A MET 509 n 74 MET 509 A LEU 510 n 75 LEU 510 A ALA 511 n 76 LYS 511 A ASP 512 n 77 ASP 512 A ASN 513 n 78 ASN 513 A ALA 514 n 79 ALA 514 A SER 515 n 80 SER 515 A ASP 516 n 81 ASP 516 A LYS 517 n 82 LYS 517 A ASP 518 n 83 ASP 518 A LEU 519 n 84 LEU 519 A ALA 520 n 85 ALA 520 A ASP 521 n 86 ASP 521 A LEU 522 n 87 LEU 522 A VAL 523 n 88 VAL 523 A SER 524 n 89 SER 524 A GLU 525 n 90 GLU 525 A MET 526 n 91 MET 526 A GLU 527 n 92 GLU 527 A VAL 528 n 93 VAL 528 A MET 529 n 94 MET 529 A LYS 530 n 95 LYS 530 A LEU 531 n 96 LEU 531 A ILE 532 n 97 ILE 532 A GLY 533 n 98 GLY 533 A ARG 534 n 99 ARG 534 A HIS 535 n 100 HIS 535 A LYS 536 n 101 LYS 536 A ASN 537 n 102 ASN 537 A ILE 538 n 103 ILE 538 A ILE 539 n 104 ILE 539 A ASN 540 n 105 ASN 540 A LEU 541 n 106 LEU 541 A LEU 542 n 107 LEU 542 A GLY 543 n 108 GLY 543 A VAL 544 n 109 VAL 544 A CYS 545 n 110 CYS 545 A THR 546 n 111 THR 546 A GLN 547 n 112 GLN 547 A GLU 548 n 113 GLU 548 A GLY 549 n 114 GLY 549 A PRO 550 n 115 PRO 550 A LEU 551 n 116 LEU 551 A TYR 552 n 117 TYR 552 A VAL 553 n 118 VAL 553 A ILE 554 n 119 ILE 554 A LEU 555 n 120 LEU 555 A GLU 556 n 121 GLU 556 A CYS 557 n 122 CYS 557 A ALA 558 n 123 ALA 558 A ALA 559 n 124 ALA 559 A LYS 560 n 125 LYS 560 A GLY 561 n 126 GLY 561 A ASN 562 n 127 ASN 562 A LEU 563 n 128 LEU 563 A ARG 564 n 129 ARG 564 A GLU 565 n 130 GLU 565 A PHE 566 n 131 PHE 566 A LEU 567 n 132 LEU 567 A ARG 568 n 133 ARG 568 A ALA 569 n 134 ALA 569 A ARG 570 n 135 ARG 570 A ARG 571 n 136 ARG 571 A PRO 572 n 137 PRO 572 A PRO 573 n 138 PRO 573 A n 139 574 A n 140 575 A n 141 576 A n 142 577 A n 143 578 A n 144 579 A n 145 580 A n 146 581 A n 147 582 A n 148 583 A n 149 584 A n 150 585 A n 151 586 A GLY 587 n 152 GLY 587 A PRO 588 n 153 PRO 588 A LEU 589 n 154 LEU 589 A SER 590 n 155 SER 590 A PHE 591 n 156 PHE 591 A PRO 592 n 157 PRO 592 A VAL 593 n 158 VAL 593 A LEU 594 n 159 LEU 594 A VAL 595 n 160 VAL 595 A SER 596 n 161 SER 596 A CYS 597 n 162 CYS 597 A ALA 598 n 163 ALA 598 A TYR 599 n 164 TYR 599 A GLN 600 n 165 GLN 600 A VAL 601 n 166 VAL 601 A ALA 602 n 167 ALA 602 A ARG 603 n 168 ARG 603 A GLY 604 n 169 GLY 604 A MET 605 n 170 MET 605 A GLN 606 n 171 GLN 606 A TYR 607 n 172 TYR 607 A LEU 608 n 173 LEU 608 A GLU 609 n 174 GLU 609 A SER 610 n 175 SER 610 A ARG 611 n 176 ARG 611 A LYS 612 n 177 LYS 612 A CYS 613 n 178 CYS 613 A ILE 614 n 179 ILE 614 A HIS 615 n 180 HIS 615 A ARG 616 n 181 ARG 616 A ASP 617 n 182 ASP 617 A LEU 618 n 183 LEU 618 A ALA 619 n 184 ALA 619 A ALA 620 n 185 ALA 620 A ARG 621 n 186 ARG 621 A ASN 622 n 187 ASN 622 A VAL 623 n 188 VAL 623 A LEU 624 n 189 LEU 624 A VAL 625 n 190 VAL 625 A THR 626 n 191 THR 626 A GLU 627 n 192 GLU 627 A ASP 628 n 193 ASP 628 A ASN 629 n 194 ASN 629 A VAL 630 n 195 VAL 630 A MET 631 n 196 MET 631 A LYS 632 n 197 LYS 632 A ILE 633 n 198 ILE 633 A ALA 634 n 199 ALA 634 A ASP 635 n 200 ASP 635 A PHE 636 n 201 PHE 636 A GLY 637 n 202 GLY 637 A LEU 638 n 203 LEU 638 A ALA 639 n 204 ALA 639 A n 205 640 A n 206 641 A n 207 642 A n 208 643 A n 209 644 A n 210 645 A n 211 646 A n 212 647 A n 213 648 A n 214 649 A n 215 650 A n 216 651 A n 217 652 A n 218 653 A n 219 654 A n 220 655 A LEU 656 n 221 LEU 656 A PRO 657 n 222 PRO 657 A VAL 658 n 223 VAL 658 A LYS 659 n 224 LYS 659 A TRP 660 n 225 TRP 660 A MET 661 n 226 MET 661 A ALA 662 n 227 ALA 662 A PRO 663 n 228 PRO 663 A GLU 664 n 229 GLU 664 A ALA 665 n 230 ALA 665 A LEU 666 n 231 LEU 666 A PHE 667 n 232 PHE 667 A ASP 668 n 233 ASP 668 A GLU 669 n 234 GLU 669 A VAL 670 n 235 VAL 670 A TYR 671 n 236 TYR 671 A THR 672 n 237 THR 672 A HIS 673 n 238 HIS 673 A GLN 674 n 239 GLN 674 A SER 675 n 240 SER 675 A ASP 676 n 241 ASP 676 A VAL 677 n 242 VAL 677 A TRP 678 n 243 TRP 678 A SER 679 n 244 SER 679 A PHE 680 n 245 PHE 680 A GLY 681 n 246 GLY 681 A ILE 682 n 247 ILE 682 A LEU 683 n 248 LEU 683 A LEU 684 n 249 LEU 684 A TRP 685 n 250 TRP 685 A GLU 686 n 251 GLU 686 A ILE 687 n 252 ILE 687 A PHE 688 n 253 PHE 688 A THR 689 n 254 THR 689 A LEU 690 n 255 LEU 690 A GLY 691 n 256 GLY 691 A GLY 692 n 257 GLY 692 A SER 693 n 258 SER 693 A PRO 694 n 259 PRO 694 A TYR 695 n 260 TYR 695 A PRO 696 n 261 PRO 696 A GLY 697 n 262 GLY 697 A ILE 698 n 263 ILE 698 A PRO 699 n 264 PRO 699 A VAL 700 n 265 VAL 700 A GLU 701 n 266 GLU 701 A GLU 702 n 267 GLU 702 A LEU 703 n 268 LEU 703 A PHE 704 n 269 PHE 704 A SER 705 n 270 SER 705 A LEU 706 n 271 LEU 706 A LEU 707 n 272 LEU 707 A ALA 708 n 273 ARG 708 A GLU 709 n 274 GLU 709 A GLY 710 n 275 GLY 710 A HIS 711 n 276 HIS 711 A ARG 712 n 277 ARG 712 A MET 713 n 278 MET 713 A ASP 714 n 279 ASP 714 A ARG 715 n 280 ARG 715 A PRO 716 n 281 PRO 716 A PRO 717 n 282 PRO 717 A HIS 718 n 283 HIS 718 A CYS 719 n 284 CYS 719 A PRO 720 n 285 PRO 720 A PRO 721 n 286 PRO 721 A GLU 722 n 287 GLU 722 A LEU 723 n 288 LEU 723 A TYR 724 n 289 TYR 724 A GLY 725 n 290 GLY 725 A LEU 726 n 291 LEU 726 A MET 727 n 292 MET 727 A ARG 728 n 293 ARG 728 A GLU 729 n 294 GLU 729 A CYS 730 n 295 CYS 730 A TRP 731 n 296 TRP 731 A HIS 732 n 297 HIS 732 A ALA 733 n 298 ALA 733 A ALA 734 n 299 ALA 734 A PRO 735 n 300 PRO 735 A SER 736 n 301 SER 736 A GLN 737 n 302 GLN 737 A ARG 738 n 303 ARG 738 A PRO 739 n 304 PRO 739 A THR 740 n 305 THR 740 A PHE 741 n 306 PHE 741 A LYS 742 n 307 LYS 742 A GLN 743 n 308 GLN 743 A LEU 744 n 309 LEU 744 A VAL 745 n 310 VAL 745 A GLU 746 n 311 GLU 746 A ALA 747 n 312 ALA 747 A LEU 748 n 313 LEU 748 A ASP 749 n 314 ASP 749 A LYS 750 n 315 LYS 750 A VAL 751 n 316 VAL 751 A LEU 752 n 317 LEU 752 A LEU 753 n 318 LEU 753 A ALA 754 n 319 ALA 754 A VAL 755 n 320 VAL 755 A n 321 756 A n 322 757 A n 323 758 A 0.2120 0.1099 0.0491 0.4140 0.3206 0.2598 0.0271 -0.0244 -0.0147 -0.0892 0.0002 -0.0082 -0.1023 -0.0198 0.0002 0.1892 -0.0232 -0.0017 0.1280 0.0121 0.1622 refined -61.4920 142.2560 11.1489 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 all author_defined_assembly 1 monomeric software_defined_assembly PISA 3 trimeric 2220 -25 39650 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_675 -y+1,x-y+2,z crystal symmetry operation 0.0000000000 241.7925606858 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_465 -x+y-1,-x+1,z crystal symmetry operation -209.3985000000 120.8962803429 0.0000000000 A N LYS 476 A N LYS 41 A O ARG 488 A O ARG 53 A N VAL 487 A N VAL 52 A O VAL 507 A O VAL 72 A N ALA 506 A N ALA 71 A O LEU 555 A O LEU 120 A O ILE 554 A O ILE 119 A N LEU 542 A N LEU 107 A N LEU 624 A N LEU 189 A O LYS 632 A O LYS 197 1 A CG GLN 447 A CG GLN 12 1 Y 1 A CD GLN 447 A CD GLN 12 1 Y 1 A OE1 GLN 447 A OE1 GLN 12 1 Y 1 A NE2 GLN 447 A NE2 GLN 12 1 Y 1 A CG ASP 500 A CG ASP 65 1 Y 1 A OD1 ASP 500 A OD1 ASP 65 1 Y 1 A OD2 ASP 500 A OD2 ASP 65 1 Y 1 A CG LYS 511 A CG LYS 76 1 Y 1 A CD LYS 511 A CD LYS 76 1 Y 1 A CE LYS 511 A CE LYS 76 1 Y 1 A NZ LYS 511 A NZ LYS 76 1 Y 1 A CG ARG 708 A CG ARG 273 1 Y 1 A CD ARG 708 A CD ARG 273 1 Y 1 A NE ARG 708 A NE ARG 273 1 Y 1 A CZ ARG 708 A CZ ARG 273 1 Y 1 A NH1 ARG 708 A NH1 ARG 273 1 Y 1 A NH2 ARG 708 A NH2 ARG 273 1 Y 1 A MET 436 A MET 1 1 Y 1 A GLY 437 A GLY 2 1 Y 1 A SER 438 A SER 3 1 Y 1 A SER 439 A SER 4 1 Y 1 A HIS 440 A HIS 5 1 Y 1 A HIS 441 A HIS 6 1 Y 1 A HIS 442 A HIS 7 1 Y 1 A HIS 443 A HIS 8 1 Y 1 A HIS 444 A HIS 9 1 Y 1 A HIS 445 A HIS 10 1 Y 1 A SER 446 A SER 11 1 Y 1 A ASP 495 A ASP 60 1 Y 1 A PRO 496 A PRO 61 1 Y 1 A ALA 497 A ALA 62 1 Y 1 A ARG 498 A ARG 63 1 Y 1 A PRO 499 A PRO 64 1 Y 1 A GLY 574 A GLY 139 1 Y 1 A PRO 575 A PRO 140 1 Y 1 A ASP 576 A ASP 141 1 Y 1 A LEU 577 A LEU 142 1 Y 1 A SER 578 A SER 143 1 Y 1 A PRO 579 A PRO 144 1 Y 1 A ASP 580 A ASP 145 1 Y 1 A GLY 581 A GLY 146 1 Y 1 A PRO 582 A PRO 147 1 Y 1 A ARG 583 A ARG 148 1 Y 1 A SER 584 A SER 149 1 Y 1 A SER 585 A SER 150 1 Y 1 A GLU 586 A GLU 151 1 Y 1 A ARG 640 A ARG 205 1 Y 1 A GLY 641 A GLY 206 1 Y 1 A VAL 642 A VAL 207 1 Y 1 A HIS 643 A HIS 208 1 Y 1 A HIS 644 A HIS 209 1 Y 1 A ILE 645 A ILE 210 1 Y 1 A ASP 646 A ASP 211 1 Y 1 A TYR 647 A TYR 212 1 Y 1 A TYR 648 A TYR 213 1 Y 1 A LYS 649 A LYS 214 1 Y 1 A LYS 650 A LYS 215 1 Y 1 A THR 651 A THR 216 1 Y 1 A SER 652 A SER 217 1 Y 1 A ASN 653 A ASN 218 1 Y 1 A GLY 654 A GLY 219 1 Y 1 A ARG 655 A ARG 220 1 Y 1 A SER 756 A SER 321 1 Y 1 A GLU 757 A GLU 322 1 Y 1 A GLU 758 A GLU 323 1 Y 1 A A LEU PHE 703 704 144.10 1 11.14 1.50 119.30 130.44 A A A C N CA GLY PRO PRO 549 550 550 Y 1 9.50 1.50 119.30 128.80 A A A C N CA LEU PRO PRO 656 657 657 Y 1 A ASP 448 -145.19 -89.41 1 A PRO 477 -49.73 153.51 1 A LEU 589 -107.32 61.15 1 A ARG 616 82.96 -11.73 1 A ASP 617 -143.51 42.66 1 A PRO 657 -47.81 -19.48 1 A PHE 704 -6.46 -92.25 1 A CYS 719 -165.12 114.90 1 A ALA 754 -68.11 26.10 0.2338 0.1930 0.1972 2.203 38.372 1812 18134 18134 9.99 99.11 0.24 Random 1 1.98 MOLECULAR REPLACEMENT 24.35 0.90 1.11 pdb entry 2PSQ ML FLAT BULK SOLVENT MODEL 2.203 38.372 0 2190 47 0 2143 0.008 2241 1.229 3044 17.984 836 0.042 334 0.007 389 0.2432 0.2090 2.2621 129 1188 91.00 0.2645 0.2290 2.3286 140 1236 98.00 0.2638 0.2215 2.4038 139 1269 100.00 0.2893 0.2164 2.4897 144 1278 100.00 0.3011 0.2270 2.5893 139 1252 100.00 0.2699 0.2110 2.7071 136 1236 100.00 0.2785 0.2257 2.8498 143 1277 100.00 0.2345 0.2100 3.0283 142 1264 100.00 0.2761 0.2178 3.2620 138 1266 100.00 0.2315 0.1943 3.5901 139 1277 100.00 0.2035 0.1671 4.1090 139 1263 100.00 0.1858 0.1555 5.1749 143 1257 100.00 0.2071 0.1761 38.3775 141 1259 100.00 2.2 50 4QQ5 18138 18138 0 0 0.102 0.102 1 13.5 4.9 99.1 2.2 2.24 1 90.1 data collection HKL-3000 model building PHENIX refinement PHENIX (phenix.refine: 1.8.4_1496) data reduction HKL-3000 data scaling HKL-3000 phasing PHASER Crystal Structure of FGF Receptor (FGFR) 4 Kinase Harboring the V550L Gate-Keeper Mutation in Complex With FIIN-2, an Irreversible Tyrosine Kinase Inhibitor Capable of Overcoming FGFR Kinase Gate-Keeper Mutations 1 N N 2 N N A ASP 448 A ASP 13 HELX_P A LEU 454 A LEU 19 1 1 7 A PRO 468 A PRO 33 HELX_P A ASP 470 A ASP 35 5 2 3 A SER 515 A SER 80 HELX_P A GLY 533 A GLY 98 1 3 19 A ASN 562 A ASN 127 HELX_P A ARG 570 A ARG 135 1 4 9 A SER 590 A SER 155 HELX_P A ARG 611 A ARG 176 1 5 22 A ALA 619 A ALA 184 HELX_P A ARG 621 A ARG 186 5 6 3 A LEU 656 A LEU 221 HELX_P A MET 661 A MET 226 5 7 6 A ALA 662 A ALA 227 HELX_P A GLU 669 A GLU 234 1 8 8 A THR 672 A THR 237 HELX_P A THR 689 A THR 254 1 9 18 A PRO 699 A PRO 264 HELX_P A GLU 709 A GLU 274 1 10 11 A PRO 720 A PRO 285 HELX_P A TRP 731 A TRP 296 1 11 12 A ALA 734 A ALA 299 HELX_P A ARG 738 A ARG 303 5 12 5 A THR 740 A THR 305 HELX_P A ALA 754 A ALA 319 1 13 15 covale 1.747 none A CYS 482 A SG CYS 47 1_555 A 37O 801 B C46 37O 1_555 Transferase/transferase inhibitor Kinase Domain Fold, Cell Signaling, Phosphotransferase, Plasmamembrane, Transferase-transferase inhibitor complex A GLN 447 A GLN 12 1 A ASP 448 A ASP 13 4.43 FGFR4_HUMAN UNP 1 445 P22455 LLAGLVSLDLPLDPLWEFPRDRLVLGKPLGEGCFGQVVRAEAFGMDPARPDQASTVAVKMLKDNASDKDLADLVSEMEVM KLIGRHKNIINLLGVCTQEGPLYVIVECAAKGNLREFLRARRPPGPDLSPDGPRSSEGPLSFPVLVSCAYQVARGMQYLE SRKCIHRDLAARNVLVTEDNVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILLWEIFT LGGSPYPGIPVEELFSLLREGHRMDRPPHCPPELYGLMRECWHAAPSQRPTFKQLVEALDKVLLAVSEE 445 753 4QQ5 450 758 P22455 A 1 15 323 1 expression tag MET 436 4QQ5 A P22455 UNP 1 1 expression tag GLY 437 4QQ5 A P22455 UNP 2 1 expression tag SER 438 4QQ5 A P22455 UNP 3 1 expression tag SER 439 4QQ5 A P22455 UNP 4 1 expression tag HIS 440 4QQ5 A P22455 UNP 5 1 expression tag HIS 441 4QQ5 A P22455 UNP 6 1 expression tag HIS 442 4QQ5 A P22455 UNP 7 1 expression tag HIS 443 4QQ5 A P22455 UNP 8 1 expression tag HIS 444 4QQ5 A P22455 UNP 9 1 expression tag HIS 445 4QQ5 A P22455 UNP 10 1 expression tag SER 446 4QQ5 A P22455 UNP 11 1 expression tag GLN 447 4QQ5 A P22455 UNP 12 1 expression tag ASP 448 4QQ5 A P22455 UNP 13 1 expression tag PRO 449 4QQ5 A P22455 UNP 14 1 VAL engineered mutation LEU 555 4QQ5 A P22455 UNP 550 120 1 ARG engineered mutation GLU 669 4QQ5 A P22455 UNP 664 234 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 472 A LEU 37 A PRO 477 A PRO 42 A GLN 485 A GLN 50 A PHE 492 A PHE 57 A ALA 502 A ALA 67 A MET 509 A MET 74 A TYR 552 A TYR 117 A GLU 556 A GLU 121 A LEU 541 A LEU 106 A CYS 545 A CYS 110 A VAL 623 A VAL 188 A VAL 625 A VAL 190 A MET 631 A MET 196 A ILE 633 A ILE 198 BINDING SITE FOR RESIDUE 37O A 801 A 37O 801 Software 16 A LEU 478 A LEU 43 16 1_555 A GLU 480 A GLU 45 16 1_555 A GLY 481 A GLY 46 16 1_555 A CYS 482 A CYS 47 16 1_555 A PHE 483 A PHE 48 16 1_555 A LYS 508 A LYS 73 16 1_555 A GLU 525 A GLU 90 16 1_555 A LEU 555 A LEU 120 16 1_555 A GLU 556 A GLU 121 16 1_555 A ALA 558 A ALA 123 16 1_555 A ALA 559 A ALA 124 16 1_555 A GLY 561 A GLY 126 16 1_555 A LEU 624 A LEU 189 16 1_555 A ALA 634 A ALA 199 16 1_555 A ASP 635 A ASP 200 16 1_555 A PHE 636 A PHE 201 16 1_555 146 H 3