0.011099
0.000000
0.000000
0.000000
0.011099
0.000000
0.000000
0.000000
0.006292
0.00000
0.00000
0.00000
Mou, Y.
Mayo, S.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
32
90.00
90.00
90.00
90.098
90.098
158.923
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
C
N
116
R
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
N
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
N
C
N
155
R
C
Y
156
N
N
Y
157
N
C
Y
158
N
N
Y
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
N
Y
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
N
193
N
N
N
194
N
C
N
195
N
O
N
196
N
N
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
O
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
N
Y
273
N
C
Y
274
N
C
Y
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
S
C
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
C
N
339
N
N
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
N
361
N
C
N
362
N
S
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
N
404
N
C
N
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
O
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
R
C
N
435
N
O
N
436
N
C
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
N
Y
456
N
C
Y
457
N
C
Y
458
N
C
Y
459
N
C
Y
460
N
C
N
461
N
O
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
N
N
475
S
C
N
476
N
C
N
477
N
O
N
478
N
C
Y
479
N
C
Y
480
N
C
Y
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
C
N
485
N
O
N
486
N
O
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
doub
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
Y
276
N
sing
Y
277
N
doub
Y
278
N
doub
N
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
Y
451
N
doub
Y
452
N
sing
Y
453
N
sing
N
454
N
sing
Y
455
N
doub
Y
456
N
sing
Y
457
N
sing
N
458
N
sing
Y
459
N
sing
Y
460
N
doub
N
461
N
sing
Y
462
N
doub
N
463
N
sing
Y
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
doub
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
Y
479
N
doub
Y
480
N
sing
Y
481
N
sing
N
482
N
sing
Y
483
N
doub
N
484
N
sing
Y
485
N
doub
N
486
N
sing
Y
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
UK
Nature
NATUAS
0006
0028-0836
525
230
233
10.1038/nature14874
26331548
Computational design of co-assembling protein-DNA nanowires.
2015
10.2210/pdb4qtr/pdb
pdb_00004qtr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
PIXEL
2014-04-23
DECTRIS PILATUS 6M
SI 111
SINGLE WAVELENGTH
M
x-ray
1
1.03320
1.0
BL12-2
SSRL
1.03320
SYNCHROTRON
SSRL BEAMLINE BL12-2
A computationally designed protein using wild-type engrailed homeodomain as the backbone template
8683.909
dualENH
4
man
polymer
A short NA strand with engrailed homeodomain binding motifs
4878.187
DNA (5'-D(P*GP*TP*GP*TP*AP*AP*TP*TP*TP*AP*AP*TP*TP*TP*CP*C)-3')
2
syn
polymer
A short NA strand with engrailed homeodomain binding motifs
4914.243
DNA (5'-D(P*CP*GP*GP*AP*AP*AP*TP*TP*AP*AP*AP*TP*TP*AP*CP*A)-3')
2
syn
polymer
no
no
MEKRPRTAFSEEQKKALDLAFYFDRYLTPEWRRYLSQRLGLNEAQIKIWFQNKRAKIKKSTGGSGGHHHHHH
MEKRPRTAFSEEQKKALDLAFYFDRYLTPEWRRYLSQRLGLNEAQIKIWFQNKRAKIKKSTGGSGGHHHHHH
A,B,C,D
polypeptide(L)
no
no
(DG)(DT)(DG)(DT)(DA)(DA)(DT)(DT)(DT)(DA)(DA)(DT)(DT)(DT)(DC)(DC)
GTGTAATTTAATTTCC
E,G
polydeoxyribonucleotide
no
no
(DC)(DG)(DG)(DA)(DA)(DA)(DT)(DT)(DA)(DA)(DA)(DT)(DT)(DA)(DC)(DA)
CGGAAATTAAATTACA
F,H
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
7227
Drosophila melanogaster
562
Escherichia coli
1
2.97
58.57
7.0
800 mM, NaCl, 0.2 M Potassium thiocyanate, 20% w/v polyethylene glycerol 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
9.118
1
20
E
2
F
16
-7.079
E_DT2:DA16_F
1
-11.500
-1.448
1.420
-0.841
-12.288
1
19
E
3
F
15
-2.923
E_DG3:DC15_F
2
-21.338
0.617
0.086
-0.092
9.577
1
20
E
5
F
13
-7.386
E_DA5:DT13_F
3
-21.718
0.244
0.519
-0.132
-4.482
1
20
E
6
F
12
-5.921
E_DA6:DT12_F
4
-6.411
1.241
-0.547
-0.165
1.156
1
20
E
7
F
11
-8.049
E_DT7:DA11_F
5
-4.689
-0.364
-0.357
-0.022
-3.912
1
20
E
8
F
10
-1.575
E_DT8:DA10_F
6
-23.770
-0.644
-0.228
-0.104
-11.386
1
20
E
10
F
8
-1.298
E_DA10:DT8_F
7
-14.408
1.061
-0.131
-0.136
-11.037
1
20
E
11
F
7
-0.769
E_DA11:DT7_F
8
-2.386
0.930
0.676
-0.159
-12.333
1
20
E
12
F
6
-7.731
E_DT12:DA6_F
9
-4.627
-1.325
1.903
-0.735
0.298
1
20
E
13
F
5
-12.946
E_DT13:DA5_F
10
-12.300
-1.536
1.182
-0.407
0.432
1
20
E
14
F
4
-5.352
E_DT14:DA4_F
11
-13.134
-0.814
0.952
-0.253
15.259
1
19
E
15
F
3
-1.852
E_DC15:DG3_F
12
-16.723
-0.315
-0.292
-0.035
0.567
1
20
G
2
H
16
-7.055
G_DT2:DA16_H
13
-12.620
-1.215
0.377
-0.173
11.128
1
19
G
3
H
15
-3.076
G_DG3:DC15_H
14
-8.496
0.707
1.279
-0.270
-6.906
G
4
H
14
11.614
G_DT4:DA14_H
15
-11.180
-1.519
-0.004
-0.176
4.962
1
20
G
5
H
13
-7.491
G_DA5:DT13_H
16
-10.115
0.486
0.716
-0.132
-1.163
1
20
G
6
H
12
-4.401
G_DA6:DT12_H
17
-5.557
1.312
0.368
-0.150
-5.369
1
20
G
7
H
11
-7.426
G_DT7:DA11_H
18
-8.854
0.406
0.457
-0.181
-6.004
1
20
G
8
H
10
-6.401
G_DT8:DA10_H
19
-14.697
-0.382
0.767
-0.028
-5.629
1
20
G
9
H
9
-4.093
G_DT9:DA9_H
20
-5.123
-1.287
0.653
-0.337
-13.363
1
20
G
10
H
8
-3.424
G_DA10:DT8_H
21
-14.990
0.520
-0.460
-0.059
-16.341
1
20
G
11
H
7
-4.418
G_DA11:DT7_H
22
-8.745
1.136
0.421
-0.225
-5.807
1
20
G
12
H
6
-2.413
G_DT12:DA6_H
23
-6.417
-0.714
0.921
-0.221
-1.690
1
20
G
13
H
5
-7.965
G_DT13:DA5_H
24
-17.238
-0.334
1.165
-0.394
-3.686
G
14
H
4
7.600
G_DT14:DA4_H
25
-8.868
-0.809
1.229
0.208
9.303
1
19
G
15
H
3
-1.952
G_DC15:DG3_H
26
-14.389
1.277
0.180
-0.559
1.704
1
19
G
16
H
2
-1.194
G_DC16:DG2_H
27
-18.793
0.460
0.388
-0.316
3.278
47.305
E
E
2
3
9.177
F
F
16
15
3.572
7.284
-0.253
-0.858
EE_DT2DG3:DC15DA16_FF
1
10.375
-13.073
45.669
-1.702
1.216
5.964
70.579
E
E
3
5
-10.023
F
F
15
13
5.870
-11.487
-0.881
-0.632
EE_DG3DA5:DT13DC15_FF
2
-13.386
11.680
68.618
0.193
-0.100
3.858
41.555
E
E
5
6
-10.437
F
F
13
12
3.809
-7.350
0.215
-0.635
EE_DA5DA6:DT12DT13_FF
3
5.340
-7.583
40.592
0.031
0.370
3.215
26.288
E
E
6
7
-3.918
F
F
12
11
3.122
-1.780
0.036
-1.522
EE_DA6DT7:DA11DT12_FF
4
-0.295
0.649
26.228
-2.881
-0.155
3.324
31.426
E
E
7
8
11.897
F
F
11
10
3.445
6.369
0.576
-0.503
EE_DT7DT8:DA10DA11_FF
5
5.469
-10.215
30.312
-2.187
0.018
6.494
81.543
E
E
8
10
11.993
F
F
10
8
6.641
15.587
0.224
-0.402
EE_DT8DA10:DT8DA10_FF
6
6.306
-4.852
80.089
-1.112
0.154
2.977
31.556
E
E
10
11
-1.947
F
F
8
7
3.015
-1.053
0.136
-1.042
EE_DA10DA11:DT7DT8_FF
7
-5.674
10.490
31.037
-1.735
-1.224
3.694
22.495
E
E
11
12
-10.703
F
F
7
6
3.357
-4.099
-0.390
-2.305
EE_DA11DT12:DA6DT7_FF
8
-6.176
16.126
21.253
-4.236
-1.522
2.795
34.928
E
E
12
13
-4.794
F
F
6
5
2.800
-2.860
-0.183
-0.962
EE_DT12DT13:DA5DA6_FF
9
6.183
-10.364
34.277
-1.230
1.112
3.000
36.209
E
E
13
14
6.678
F
F
5
4
3.036
4.135
0.837
-0.783
EE_DT13DT14:DA4DA5_FF
10
3.789
-6.120
35.786
-1.800
-0.853
2.758
43.578
E
E
14
15
3.090
F
F
4
3
2.728
2.268
0.473
0.056
EE_DT14DC15:DG3DA4_FF
11
11.609
-15.818
42.017
-0.111
0.319
2.878
43.008
G
G
2
3
-0.162
H
H
16
15
2.996
-0.118
0.543
-0.282
GG_DT2DG3:DC15DA16_HH
12
-6.911
9.464
42.475
-0.374
-1.358
3.474
26.947
G
G
3
4
14.575
H
H
15
14
3.713
6.381
1.280
-1.020
GG_DG3DT4:DA14DC15_HH
13
14.265
-32.585
22.022
-4.171
1.685
3.198
51.307
G
G
4
5
0.525
H
H
14
13
3.007
0.450
-1.150
0.407
GG_DT4DA5:DT13DA14_HH
14
-13.116
15.296
49.710
0.440
0.458
3.621
39.518
G
G
5
6
-11.460
H
H
13
12
3.528
-7.701
0.248
-0.797
GG_DA5DA6:DT12DT13_HH
15
1.463
-2.177
38.764
-0.179
-0.177
3.671
28.910
G
G
6
7
-8.709
H
H
12
11
3.476
-4.332
-0.437
-1.546
GG_DA6DT7:DA11DT12_HH
16
-0.438
0.880
28.587
-2.040
0.768
3.062
30.504
G
G
7
8
4.221
H
H
11
10
3.119
2.215
0.307
-0.903
GG_DT7DT8:DA10DA11_HH
17
3.088
-5.884
30.271
-2.135
0.000
2.818
32.582
G
G
8
9
24.120
H
H
10
9
3.297
13.157
-0.111
-0.505
GG_DT8DT9:DA9DA10_HH
18
1.951
-3.576
29.811
-3.144
0.530
3.704
44.851
G
G
9
10
10.438
H
H
9
8
3.651
7.923
0.080
0.633
GG_DT9DA10:DT8DA9_HH
19
2.435
-3.209
44.117
0.015
0.146
3.163
34.440
G
G
10
11
6.623
H
H
8
7
3.281
3.877
-0.200
-0.482
GG_DA10DA11:DT7DT8_HH
20
-8.318
14.211
33.231
-1.419
-0.962
3.007
22.641
G
G
11
12
-4.861
H
H
7
6
2.917
-1.904
0.602
-1.983
GG_DA11DT12:DA6DT7_HH
21
-2.029
5.181
22.472
-4.424
-2.204
3.279
39.007
G
G
12
13
-12.415
H
H
6
5
3.173
-8.232
-0.563
-0.852
GG_DT12DT13:DA5DA6_HH
22
0.118
-0.178
38.161
-0.285
0.857
3.236
30.628
G
G
13
14
1.928
H
H
5
4
3.146
1.016
1.298
-0.878
GG_DT13DT14:DA4DA5_HH
23
3.338
-6.333
30.433
-1.858
-1.813
2.732
46.303
G
G
14
15
3.445
H
H
4
3
2.827
2.702
-0.734
0.198
GG_DT14DC15:DG3DA4_HH
24
5.588
-7.126
45.908
0.056
1.338
3.015
30.730
G
G
15
16
19.651
H
H
3
2
3.346
10.221
0.204
-0.477
GG_DC15DC16:DG2DG3_HH
25
1.404
-2.700
28.986
-2.909
-0.109
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Database references
Data collection
Database references
Refinement description
1
0
2015-07-29
1
1
2015-09-09
1
2
2015-09-30
1
3
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2014-07-08
REL
REL
3HHD
PDB ENTRY 3HHD
PDB
experimental model
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
n
5
4
A
ARG
5
n
6
ARG
5
A
THR
6
n
7
THR
6
A
ALA
7
n
8
ALA
7
A
PHE
8
n
9
PHE
8
A
SER
9
n
10
SER
9
A
GLU
10
n
11
GLU
10
A
GLU
11
n
12
GLU
11
A
GLN
12
n
13
GLN
12
A
LYS
13
n
14
LYS
13
A
LYS
14
n
15
LYS
14
A
ALA
15
n
16
ALA
15
A
LEU
16
n
17
LEU
16
A
ASP
17
n
18
ASP
17
A
LEU
18
n
19
LEU
18
A
ALA
19
n
20
ALA
19
A
PHE
20
n
21
PHE
20
A
TYR
21
n
22
TYR
21
A
PHE
22
n
23
PHE
22
A
ASP
23
n
24
ASP
23
A
ARG
24
n
25
ARG
24
A
TYR
25
n
26
TYR
25
A
LEU
26
n
27
LEU
26
A
THR
27
n
28
THR
27
A
PRO
28
n
29
PRO
28
A
GLU
29
n
30
GLU
29
A
TRP
30
n
31
TRP
30
A
ARG
31
n
32
ARG
31
A
ARG
32
n
33
ARG
32
A
TYR
33
n
34
TYR
33
A
LEU
34
n
35
LEU
34
A
SER
35
n
36
SER
35
A
GLN
36
n
37
GLN
36
A
ARG
37
n
38
ARG
37
A
LEU
38
n
39
LEU
38
A
GLY
39
n
40
GLY
39
A
LEU
40
n
41
LEU
40
A
ASN
41
n
42
ASN
41
A
GLU
42
n
43
GLU
42
A
ALA
43
n
44
ALA
43
A
GLN
44
n
45
GLN
44
A
ILE
45
n
46
ILE
45
A
LYS
46
n
47
LYS
46
A
ILE
47
n
48
ILE
47
A
TRP
48
n
49
TRP
48
A
PHE
49
n
50
PHE
49
A
GLN
50
n
51
GLN
50
A
ASN
51
n
52
ASN
51
A
LYS
52
n
53
LYS
52
A
ARG
53
n
54
ARG
53
A
ALA
54
n
55
ALA
54
A
LYS
55
n
56
LYS
55
A
ILE
56
n
57
ILE
56
A
LYS
57
n
58
LYS
57
A
LYS
58
n
59
LYS
58
A
SER
59
n
60
SER
59
A
n
61
60
A
n
62
61
A
n
63
62
A
n
64
63
A
n
65
64
A
n
66
65
A
n
67
66
A
n
68
67
A
n
69
68
A
n
70
69
A
n
71
70
A
n
72
71
A
n
1
0
B
n
2
1
B
n
3
2
B
n
4
3
B
n
5
4
B
n
6
5
B
THR
6
n
7
THR
6
B
ALA
7
n
8
ALA
7
B
PHE
8
n
9
PHE
8
B
SER
9
n
10
SER
9
B
GLU
10
n
11
GLU
10
B
GLU
11
n
12
GLU
11
B
GLN
12
n
13
GLN
12
B
LYS
13
n
14
LYS
13
B
LYS
14
n
15
LYS
14
B
ALA
15
n
16
ALA
15
B
LEU
16
n
17
LEU
16
B
ASP
17
n
18
ASP
17
B
LEU
18
n
19
LEU
18
B
ALA
19
n
20
ALA
19
B
PHE
20
n
21
PHE
20
B
TYR
21
n
22
TYR
21
B
PHE
22
n
23
PHE
22
B
ASP
23
n
24
ASP
23
B
ARG
24
n
25
ARG
24
B
TYR
25
n
26
TYR
25
B
LEU
26
n
27
LEU
26
B
THR
27
n
28
THR
27
B
PRO
28
n
29
PRO
28
B
GLU
29
n
30
GLU
29
B
TRP
30
n
31
TRP
30
B
ARG
31
n
32
ARG
31
B
ARG
32
n
33
ARG
32
B
TYR
33
n
34
TYR
33
B
LEU
34
n
35
LEU
34
B
SER
35
n
36
SER
35
B
GLN
36
n
37
GLN
36
B
ARG
37
n
38
ARG
37
B
LEU
38
n
39
LEU
38
B
GLY
39
n
40
GLY
39
B
LEU
40
n
41
LEU
40
B
ASN
41
n
42
ASN
41
B
GLU
42
n
43
GLU
42
B
ALA
43
n
44
ALA
43
B
GLN
44
n
45
GLN
44
B
ILE
45
n
46
ILE
45
B
LYS
46
n
47
LYS
46
B
ILE
47
n
48
ILE
47
B
TRP
48
n
49
TRP
48
B
PHE
49
n
50
PHE
49
B
GLN
50
n
51
GLN
50
B
ASN
51
n
52
ASN
51
B
LYS
52
n
53
LYS
52
B
ARG
53
n
54
ARG
53
B
ALA
54
n
55
ALA
54
B
LYS
55
n
56
LYS
55
B
ILE
56
n
57
ILE
56
B
LYS
57
n
58
LYS
57
B
LYS
58
n
59
LYS
58
B
SER
59
n
60
SER
59
B
n
61
60
B
n
62
61
B
n
63
62
B
n
64
63
B
n
65
64
B
n
66
65
B
n
67
66
B
n
68
67
B
n
69
68
B
n
70
69
B
n
71
70
B
n
72
71
B
n
1
0
C
n
2
1
C
n
3
2
C
n
4
3
C
n
5
4
C
ARG
5
n
6
ARG
5
C
THR
6
n
7
THR
6
C
ALA
7
n
8
ALA
7
C
PHE
8
n
9
PHE
8
C
SER
9
n
10
SER
9
C
GLU
10
n
11
GLU
10
C
GLU
11
n
12
GLU
11
C
GLN
12
n
13
GLN
12
C
LYS
13
n
14
LYS
13
C
LYS
14
n
15
LYS
14
C
ALA
15
n
16
ALA
15
C
LEU
16
n
17
LEU
16
C
ASP
17
n
18
ASP
17
C
LEU
18
n
19
LEU
18
C
ALA
19
n
20
ALA
19
C
PHE
20
n
21
PHE
20
C
TYR
21
n
22
TYR
21
C
PHE
22
n
23
PHE
22
C
ASP
23
n
24
ASP
23
C
ARG
24
n
25
ARG
24
C
TYR
25
n
26
TYR
25
C
LEU
26
n
27
LEU
26
C
THR
27
n
28
THR
27
C
PRO
28
n
29
PRO
28
C
GLU
29
n
30
GLU
29
C
TRP
30
n
31
TRP
30
C
ARG
31
n
32
ARG
31
C
ARG
32
n
33
ARG
32
C
TYR
33
n
34
TYR
33
C
LEU
34
n
35
LEU
34
C
SER
35
n
36
SER
35
C
GLN
36
n
37
GLN
36
C
ARG
37
n
38
ARG
37
C
LEU
38
n
39
LEU
38
C
GLY
39
n
40
GLY
39
C
LEU
40
n
41
LEU
40
C
ASN
41
n
42
ASN
41
C
GLU
42
n
43
GLU
42
C
ALA
43
n
44
ALA
43
C
GLN
44
n
45
GLN
44
C
ILE
45
n
46
ILE
45
C
LYS
46
n
47
LYS
46
C
ILE
47
n
48
ILE
47
C
TRP
48
n
49
TRP
48
C
PHE
49
n
50
PHE
49
C
GLN
50
n
51
GLN
50
C
ASN
51
n
52
ASN
51
C
LYS
52
n
53
LYS
52
C
ARG
53
n
54
ARG
53
C
ALA
54
n
55
ALA
54
C
LYS
55
n
56
LYS
55
C
ILE
56
n
57
ILE
56
C
LYS
57
n
58
LYS
57
C
LYS
58
n
59
LYS
58
C
SER
59
n
60
SER
59
C
THR
60
n
61
THR
60
C
GLY
61
n
62
GLY
61
C
n
63
62
C
n
64
63
C
n
65
64
C
n
66
65
C
n
67
66
C
n
68
67
C
n
69
68
C
n
70
69
C
n
71
70
C
n
72
71
C
n
1
0
D
n
2
1
D
n
3
2
D
n
4
3
D
n
5
4
D
ARG
5
n
6
ARG
5
D
THR
6
n
7
THR
6
D
ALA
7
n
8
ALA
7
D
PHE
8
n
9
PHE
8
D
SER
9
n
10
SER
9
D
GLU
10
n
11
GLU
10
D
GLU
11
n
12
GLU
11
D
GLN
12
n
13
GLN
12
D
LYS
13
n
14
LYS
13
D
LYS
14
n
15
LYS
14
D
ALA
15
n
16
ALA
15
D
LEU
16
n
17
LEU
16
D
ASP
17
n
18
ASP
17
D
LEU
18
n
19
LEU
18
D
ALA
19
n
20
ALA
19
D
PHE
20
n
21
PHE
20
D
TYR
21
n
22
TYR
21
D
PHE
22
n
23
PHE
22
D
ASP
23
n
24
ASP
23
D
ARG
24
n
25
ARG
24
D
TYR
25
n
26
TYR
25
D
LEU
26
n
27
LEU
26
D
THR
27
n
28
THR
27
D
PRO
28
n
29
PRO
28
D
GLU
29
n
30
GLU
29
D
TRP
30
n
31
TRP
30
D
ARG
31
n
32
ARG
31
D
ARG
32
n
33
ARG
32
D
TYR
33
n
34
TYR
33
D
LEU
34
n
35
LEU
34
D
SER
35
n
36
SER
35
D
GLN
36
n
37
GLN
36
D
ARG
37
n
38
ARG
37
D
LEU
38
n
39
LEU
38
D
GLY
39
n
40
GLY
39
D
LEU
40
n
41
LEU
40
D
ASN
41
n
42
ASN
41
D
GLU
42
n
43
GLU
42
D
ALA
43
n
44
ALA
43
D
GLN
44
n
45
GLN
44
D
ILE
45
n
46
ILE
45
D
LYS
46
n
47
LYS
46
D
ILE
47
n
48
ILE
47
D
TRP
48
n
49
TRP
48
D
PHE
49
n
50
PHE
49
D
GLN
50
n
51
GLN
50
D
ASN
51
n
52
ASN
51
D
LYS
52
n
53
LYS
52
D
ARG
53
n
54
ARG
53
D
ALA
54
n
55
ALA
54
D
LYS
55
n
56
LYS
55
D
ILE
56
n
57
ILE
56
D
LYS
57
n
58
LYS
57
D
LYS
58
n
59
LYS
58
D
SER
59
n
60
SER
59
D
n
61
60
D
n
62
61
D
n
63
62
D
n
64
63
D
n
65
64
D
n
66
65
D
n
67
66
D
n
68
67
D
n
69
68
D
n
70
69
D
n
71
70
D
n
72
71
D
DG
1
n
1
DG
1
E
DT
2
n
2
DT
2
E
DG
3
n
3
DG
3
E
DT
4
n
4
DT
4
E
DA
5
n
5
DA
5
E
DA
6
n
6
DA
6
E
DT
7
n
7
DT
7
E
DT
8
n
8
DT
8
E
DT
9
n
9
DT
9
E
DA
10
n
10
DA
10
E
DA
11
n
11
DA
11
E
DT
12
n
12
DT
12
E
DT
13
n
13
DT
13
E
DT
14
n
14
DT
14
E
DC
15
n
15
DC
15
E
n
16
16
E
DG
1
n
1
DG
1
G
DT
2
n
2
DT
2
G
DG
3
n
3
DG
3
G
DT
4
n
4
DT
4
G
DA
5
n
5
DA
5
G
DA
6
n
6
DA
6
G
DT
7
n
7
DT
7
G
DT
8
n
8
DT
8
G
DT
9
n
9
DT
9
G
DA
10
n
10
DA
10
G
DA
11
n
11
DA
11
G
DT
12
n
12
DT
12
G
DT
13
n
13
DT
13
G
DT
14
n
14
DT
14
G
DC
15
n
15
DC
15
G
DC
16
n
16
DC
16
G
DC
1
n
1
DC
1
F
DG
2
n
2
DG
2
F
DG
3
n
3
DG
3
F
DA
4
n
4
DA
4
F
DA
5
n
5
DA
5
F
DA
6
n
6
DA
6
F
DT
7
n
7
DT
7
F
DT
8
n
8
DT
8
F
DA
9
n
9
DA
9
F
DA
10
n
10
DA
10
F
DA
11
n
11
DA
11
F
DT
12
n
12
DT
12
F
DT
13
n
13
DT
13
F
DA
14
n
14
DA
14
F
DC
15
n
15
DC
15
F
DA
16
n
16
DA
16
F
DC
1
n
1
DC
1
H
DG
2
n
2
DG
2
H
DG
3
n
3
DG
3
H
DA
4
n
4
DA
4
H
DA
5
n
5
DA
5
H
DA
6
n
6
DA
6
H
DT
7
n
7
DT
7
H
DT
8
n
8
DT
8
H
DA
9
n
9
DA
9
H
DA
10
n
10
DA
10
H
DA
11
n
11
DA
11
H
DT
12
n
12
DT
12
H
DT
13
n
13
DT
13
H
DA
14
n
14
DA
14
H
DC
15
n
15
DC
15
H
DA
16
n
16
DA
16
H
4.8424
3.4345
-0.4453
2.3289
0.1113
0.5635
-2.2726
1.9566
-3.4554
-1.3087
-0.4601
1.0718
0.3278
-1.1497
0.6830
0.8714
-0.2320
-0.5692
2.8355
0.0368
2.2489
refined
12.8238
80.9395
2.9441
X-RAY DIFFRACTION
0.6301
2.2098
-1.7809
6.6884
-6.4431
6.6730
0.9503
-0.7099
-0.0598
-0.2900
0.7798
-1.5593
-0.8171
-2.8902
-1.6917
1.0105
0.3861
-0.3226
2.7775
0.4118
1.7444
refined
15.5978
83.7387
7.4731
X-RAY DIFFRACTION
4.4183
-1.5331
-0.7621
5.4731
-0.9875
4.4672
-0.9904
0.4340
-0.9566
-1.4210
0.7538
1.5284
-1.0431
0.7699
-0.0785
1.2834
-0.1069
-0.4111
1.6448
0.1567
1.5515
refined
37.8309
73.2917
31.5231
X-RAY DIFFRACTION
1.9376
-0.7434
0.5737
0.3708
0.3829
7.6617
0.3946
1.1240
0.2965
-0.3019
-0.7625
0.5048
-0.5809
-0.3686
0.1689
1.3555
-0.1504
-0.1277
1.2894
0.1288
1.0846
refined
40.9872
74.7792
26.5573
X-RAY DIFFRACTION
4.1597
-1.6014
0.4784
1.7039
0.5126
0.8034
0.5053
3.0494
-3.3075
-2.2477
2.0670
0.9459
-0.7586
0.0175
0.2784
1.3772
-0.6031
0.1778
0.9809
-0.0809
1.5003
refined
39.6459
61.1730
52.4584
X-RAY DIFFRACTION
1.6490
-2.2087
1.1967
3.3632
-0.3236
4.9860
0.5131
-0.2978
-0.7120
0.2250
-0.7415
-0.3605
-0.8656
-1.3563
0.2802
2.3883
0.6643
-0.2209
-1.0092
0.1223
1.5519
refined
44.0725
65.3803
40.7549
X-RAY DIFFRACTION
2.6943
-1.1566
2.1723
3.1510
-4.7308
7.2780
1.9341
-0.9123
0.2870
0.7919
-2.1132
-1.5230
-1.8892
1.3435
-0.0738
2.6149
0.2521
-0.4775
0.8631
-0.2965
1.3797
refined
47.1048
75.5750
45.1071
X-RAY DIFFRACTION
3.2838
-1.1964
0.4979
0.4866
0.1101
3.1769
-1.1600
-0.2672
2.8486
-0.4352
1.2007
-0.4004
-2.9386
-0.5767
0.0245
1.9804
-0.1127
-0.0114
1.1157
0.3160
1.1073
refined
37.4106
72.0608
48.4134
X-RAY DIFFRACTION
8.5080
-4.1123
0.6477
7.8200
1.1633
1.9714
0.0837
-1.8677
0.2416
-0.4908
1.5294
-0.8930
1.9012
0.3457
-0.0137
1.9452
-0.0358
-0.4688
0.8774
-0.1338
0.8776
refined
52.6564
64.1167
48.0748
X-RAY DIFFRACTION
2.1973
-3.4453
0.3296
5.7778
0.5639
3.2168
-0.5520
0.3218
1.2733
1.3749
0.4673
-2.6154
-1.2810
1.0822
0.2471
1.9850
-0.0207
0.0876
0.9204
-0.0066
1.4854
refined
50.7288
76.3480
73.5199
X-RAY DIFFRACTION
8.5076
2.2043
-2.5679
2.2182
-1.4474
1.2120
0.7459
1.3983
-0.2837
1.3757
0.4965
-2.1332
3.4064
1.6734
-0.7561
1.9471
0.4547
-0.3652
1.0564
-0.1866
1.0347
refined
41.5721
73.0856
69.6837
X-RAY DIFFRACTION
1.4529
-1.1545
-0.4210
1.4516
0.6845
2.5326
-1.1936
0.6752
-1.3505
0.1061
1.3462
0.2136
-0.8291
0.1701
-0.4755
1.6227
-0.1397
0.1422
1.0498
-0.2827
1.0298
refined
55.9818
74.1028
68.1762
X-RAY DIFFRACTION
4.4840
-1.2269
-0.2404
0.6340
-0.3982
0.6902
0.3509
-2.0717
-3.1667
1.4933
0.5312
0.7818
1.8354
-2.6937
-0.6210
1.8291
-0.5186
0.0877
2.0973
0.4043
1.9440
refined
13.4133
69.9541
17.1030
X-RAY DIFFRACTION
3.2107
0.2821
-0.0974
3.3780
-1.1112
4.6400
-0.7881
-0.7944
-0.1373
0.3017
-0.3839
-1.1708
0.4842
-1.6746
0.7349
1.7812
-0.4615
-0.2854
2.1154
0.2315
1.6235
refined
35.2160
80.7620
13.3572
X-RAY DIFFRACTION
2.8494
0.7890
2.5272
7.1641
1.7323
6.3161
0.9746
-0.7343
-0.5789
-0.6387
0.2037
-1.0367
-1.1268
-0.9649
-0.5816
2.3631
-0.0777
0.0382
2.2098
0.0845
1.7208
refined
35.9434
85.4277
17.3923
X-RAY DIFFRACTION
4.8220
0.1027
-1.0685
3.5157
-1.0369
5.0525
-1.7868
2.3479
-1.1772
-1.0925
0.9274
-0.6721
-0.5712
-0.4237
0.2236
2.8452
-0.3628
-0.0696
1.8185
-0.0708
2.1350
refined
17.1164
69.0573
18.3217
X-RAY DIFFRACTION
2.8678
1.2373
2.1318
3.5730
1.7886
3.6657
1.2956
-1.2880
-0.0585
0.8207
-1.8576
-0.1573
0.0726
-0.3276
0.4551
1.7467
-0.1166
-0.2207
1.2105
-0.0451
1.6685
refined
56.2416
66.3338
56.8096
X-RAY DIFFRACTION
4.2727
-2.9122
2.1526
3.5377
0.2650
1.3432
-0.5960
-0.5532
0.0661
-0.5806
0.0218
-0.7472
-0.4164
0.5193
0.5095
2.4265
-0.2079
-0.2106
1.6971
0.1657
1.6580
refined
57.3944
69.5365
59.6040
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resid 5 through 27 )
X-RAY DIFFRACTION
2
chain 'A' and (resid 28 through 59 )
X-RAY DIFFRACTION
3
chain 'B' and (resid 6 through 27 )
X-RAY DIFFRACTION
4
chain 'B' and (resid 28 through 59 )
X-RAY DIFFRACTION
5
chain 'C' and (resid 5 through 9 )
X-RAY DIFFRACTION
6
chain 'C' and (resid 10 through 22 )
X-RAY DIFFRACTION
7
chain 'C' and (resid 23 through 35 )
X-RAY DIFFRACTION
8
chain 'C' and (resid 36 through 41 )
X-RAY DIFFRACTION
9
chain 'C' and (resid 42 through 61 )
X-RAY DIFFRACTION
10
chain 'D' and (resid 5 through 27 )
X-RAY DIFFRACTION
11
chain 'D' and (resid 28 through 41 )
X-RAY DIFFRACTION
12
chain 'D' and (resid 42 through 59 )
X-RAY DIFFRACTION
13
chain 'E' and (resid 1 through 9 )
X-RAY DIFFRACTION
14
chain 'E' and (resid 10 through 15 )
X-RAY DIFFRACTION
15
chain 'F' and (resid 1 through 8 )
X-RAY DIFFRACTION
16
chain 'F' and (resid 9 through 16 )
X-RAY DIFFRACTION
17
chain 'G' and (resid 1 through 16 )
X-RAY DIFFRACTION
18
chain 'H' and (resid 1 through 16 )
author_and_software_defined_assembly
PISA
4
tetrameric
author_and_software_defined_assembly
PISA
4
tetrameric
3000
-31
12430
3190
-34
12610
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
ARG
5
A
CG
ARG
6
1
Y
1
A
CD
ARG
5
A
CD
ARG
6
1
Y
1
A
NE
ARG
5
A
NE
ARG
6
1
Y
1
A
CZ
ARG
5
A
CZ
ARG
6
1
Y
1
A
NH1
ARG
5
A
NH1
ARG
6
1
Y
1
A
NH2
ARG
5
A
NH2
ARG
6
1
Y
1
A
CG
PHE
8
A
CG
PHE
9
1
Y
1
A
CD1
PHE
8
A
CD1
PHE
9
1
Y
1
A
CD2
PHE
8
A
CD2
PHE
9
1
Y
1
A
CE1
PHE
8
A
CE1
PHE
9
1
Y
1
A
CE2
PHE
8
A
CE2
PHE
9
1
Y
1
A
CZ
PHE
8
A
CZ
PHE
9
1
Y
1
A
CG
GLU
11
A
CG
GLU
12
1
Y
1
A
CD
GLU
11
A
CD
GLU
12
1
Y
1
A
OE1
GLU
11
A
OE1
GLU
12
1
Y
1
A
OE2
GLU
11
A
OE2
GLU
12
1
Y
1
A
CG
GLN
12
A
CG
GLN
13
1
Y
1
A
CD
GLN
12
A
CD
GLN
13
1
Y
1
A
OE1
GLN
12
A
OE1
GLN
13
1
Y
1
A
NE2
GLN
12
A
NE2
GLN
13
1
Y
1
A
CG
LYS
13
A
CG
LYS
14
1
Y
1
A
CD
LYS
13
A
CD
LYS
14
1
Y
1
A
CE
LYS
13
A
CE
LYS
14
1
Y
1
A
NZ
LYS
13
A
NZ
LYS
14
1
Y
1
A
CG
LYS
14
A
CG
LYS
15
1
Y
1
A
CD
LYS
14
A
CD
LYS
15
1
Y
1
A
CE
LYS
14
A
CE
LYS
15
1
Y
1
A
NZ
LYS
14
A
NZ
LYS
15
1
Y
1
A
CG
LEU
16
A
CG
LEU
17
1
Y
1
A
CD1
LEU
16
A
CD1
LEU
17
1
Y
1
A
CD2
LEU
16
A
CD2
LEU
17
1
Y
1
A
CG
LEU
18
A
CG
LEU
19
1
Y
1
A
CD1
LEU
18
A
CD1
LEU
19
1
Y
1
A
CD2
LEU
18
A
CD2
LEU
19
1
Y
1
A
CG
ARG
24
A
CG
ARG
25
1
Y
1
A
CD
ARG
24
A
CD
ARG
25
1
Y
1
A
NE
ARG
24
A
NE
ARG
25
1
Y
1
A
CZ
ARG
24
A
CZ
ARG
25
1
Y
1
A
NH1
ARG
24
A
NH1
ARG
25
1
Y
1
A
NH2
ARG
24
A
NH2
ARG
25
1
Y
1
A
CG
LEU
26
A
CG
LEU
27
1
Y
1
A
CD1
LEU
26
A
CD1
LEU
27
1
Y
1
A
CD2
LEU
26
A
CD2
LEU
27
1
Y
1
A
CG
ARG
37
A
CG
ARG
38
1
Y
1
A
CD
ARG
37
A
CD
ARG
38
1
Y
1
A
NE
ARG
37
A
NE
ARG
38
1
Y
1
A
CZ
ARG
37
A
CZ
ARG
38
1
Y
1
A
NH1
ARG
37
A
NH1
ARG
38
1
Y
1
A
NH2
ARG
37
A
NH2
ARG
38
1
Y
1
A
CG
GLU
42
A
CG
GLU
43
1
Y
1
A
CD
GLU
42
A
CD
GLU
43
1
Y
1
A
OE1
GLU
42
A
OE1
GLU
43
1
Y
1
A
OE2
GLU
42
A
OE2
GLU
43
1
Y
1
A
CG1
ILE
45
A
CG1
ILE
46
1
Y
1
A
CG2
ILE
45
A
CG2
ILE
46
1
Y
1
A
CD1
ILE
45
A
CD1
ILE
46
1
Y
1
A
CG
LYS
46
A
CG
LYS
47
1
Y
1
A
CD
LYS
46
A
CD
LYS
47
1
Y
1
A
CE
LYS
46
A
CE
LYS
47
1
Y
1
A
NZ
LYS
46
A
NZ
LYS
47
1
Y
1
A
CG1
ILE
47
A
CG1
ILE
48
1
Y
1
A
CG2
ILE
47
A
CG2
ILE
48
1
Y
1
A
CD1
ILE
47
A
CD1
ILE
48
1
Y
1
A
CG
PHE
49
A
CG
PHE
50
1
Y
1
A
CD1
PHE
49
A
CD1
PHE
50
1
Y
1
A
CD2
PHE
49
A
CD2
PHE
50
1
Y
1
A
CE1
PHE
49
A
CE1
PHE
50
1
Y
1
A
CE2
PHE
49
A
CE2
PHE
50
1
Y
1
A
CZ
PHE
49
A
CZ
PHE
50
1
Y
1
A
CG
GLN
50
A
CG
GLN
51
1
Y
1
A
CD
GLN
50
A
CD
GLN
51
1
Y
1
A
OE1
GLN
50
A
OE1
GLN
51
1
Y
1
A
NE2
GLN
50
A
NE2
GLN
51
1
Y
1
A
CG
ASN
51
A
CG
ASN
52
1
Y
1
A
OD1
ASN
51
A
OD1
ASN
52
1
Y
1
A
ND2
ASN
51
A
ND2
ASN
52
1
Y
1
A
CG
LYS
52
A
CG
LYS
53
1
Y
1
A
CD
LYS
52
A
CD
LYS
53
1
Y
1
A
CE
LYS
52
A
CE
LYS
53
1
Y
1
A
NZ
LYS
52
A
NZ
LYS
53
1
Y
1
A
CG
LYS
55
A
CG
LYS
56
1
Y
1
A
CD
LYS
55
A
CD
LYS
56
1
Y
1
A
CE
LYS
55
A
CE
LYS
56
1
Y
1
A
NZ
LYS
55
A
NZ
LYS
56
1
Y
1
A
CG1
ILE
56
A
CG1
ILE
57
1
Y
1
A
CG2
ILE
56
A
CG2
ILE
57
1
Y
1
A
CD1
ILE
56
A
CD1
ILE
57
1
Y
1
A
CG
LYS
57
A
CG
LYS
58
1
Y
1
A
CD
LYS
57
A
CD
LYS
58
1
Y
1
A
CE
LYS
57
A
CE
LYS
58
1
Y
1
A
NZ
LYS
57
A
NZ
LYS
58
1
Y
1
A
CG
LYS
58
A
CG
LYS
59
1
Y
1
A
CD
LYS
58
A
CD
LYS
59
1
Y
1
A
CE
LYS
58
A
CE
LYS
59
1
Y
1
A
NZ
LYS
58
A
NZ
LYS
59
1
Y
1
B
CG
LYS
13
B
CG
LYS
14
1
Y
1
B
CD
LYS
13
B
CD
LYS
14
1
Y
1
B
CE
LYS
13
B
CE
LYS
14
1
Y
1
B
NZ
LYS
13
B
NZ
LYS
14
1
Y
1
B
CG
LYS
14
B
CG
LYS
15
1
Y
1
B
CD
LYS
14
B
CD
LYS
15
1
Y
1
B
CE
LYS
14
B
CE
LYS
15
1
Y
1
B
NZ
LYS
14
B
NZ
LYS
15
1
Y
1
B
CG
LEU
16
B
CG
LEU
17
1
Y
1
B
CD1
LEU
16
B
CD1
LEU
17
1
Y
1
B
CD2
LEU
16
B
CD2
LEU
17
1
Y
1
B
CG
LEU
18
B
CG
LEU
19
1
Y
1
B
CD1
LEU
18
B
CD1
LEU
19
1
Y
1
B
CD2
LEU
18
B
CD2
LEU
19
1
Y
1
B
CG
ARG
24
B
CG
ARG
25
1
Y
1
B
CD
ARG
24
B
CD
ARG
25
1
Y
1
B
NE
ARG
24
B
NE
ARG
25
1
Y
1
B
CZ
ARG
24
B
CZ
ARG
25
1
Y
1
B
NH1
ARG
24
B
NH1
ARG
25
1
Y
1
B
NH2
ARG
24
B
NH2
ARG
25
1
Y
1
B
CG
ARG
32
B
CG
ARG
33
1
Y
1
B
CD
ARG
32
B
CD
ARG
33
1
Y
1
B
NE
ARG
32
B
NE
ARG
33
1
Y
1
B
CZ
ARG
32
B
CZ
ARG
33
1
Y
1
B
NH1
ARG
32
B
NH1
ARG
33
1
Y
1
B
NH2
ARG
32
B
NH2
ARG
33
1
Y
1
B
CG
GLN
36
B
CG
GLN
37
1
Y
1
B
CD
GLN
36
B
CD
GLN
37
1
Y
1
B
OE1
GLN
36
B
OE1
GLN
37
1
Y
1
B
NE2
GLN
36
B
NE2
GLN
37
1
Y
1
B
CG
LYS
46
B
CG
LYS
47
1
Y
1
B
CD
LYS
46
B
CD
LYS
47
1
Y
1
B
CE
LYS
46
B
CE
LYS
47
1
Y
1
B
NZ
LYS
46
B
NZ
LYS
47
1
Y
1
B
CG
GLN
50
B
CG
GLN
51
1
Y
1
B
CD
GLN
50
B
CD
GLN
51
1
Y
1
B
OE1
GLN
50
B
OE1
GLN
51
1
Y
1
B
NE2
GLN
50
B
NE2
GLN
51
1
Y
1
B
CG
LYS
52
B
CG
LYS
53
1
Y
1
B
CD
LYS
52
B
CD
LYS
53
1
Y
1
B
CE
LYS
52
B
CE
LYS
53
1
Y
1
B
NZ
LYS
52
B
NZ
LYS
53
1
Y
1
B
CG
LYS
55
B
CG
LYS
56
1
Y
1
B
CD
LYS
55
B
CD
LYS
56
1
Y
1
B
CE
LYS
55
B
CE
LYS
56
1
Y
1
B
NZ
LYS
55
B
NZ
LYS
56
1
Y
1
B
CG1
ILE
56
B
CG1
ILE
57
1
Y
1
B
CG2
ILE
56
B
CG2
ILE
57
1
Y
1
B
CD1
ILE
56
B
CD1
ILE
57
1
Y
1
B
CG
LYS
57
B
CG
LYS
58
1
Y
1
B
CD
LYS
57
B
CD
LYS
58
1
Y
1
B
CE
LYS
57
B
CE
LYS
58
1
Y
1
B
NZ
LYS
57
B
NZ
LYS
58
1
Y
1
B
CG
LYS
58
B
CG
LYS
59
1
Y
1
B
CD
LYS
58
B
CD
LYS
59
1
Y
1
B
CE
LYS
58
B
CE
LYS
59
1
Y
1
B
NZ
LYS
58
B
NZ
LYS
59
1
Y
1
C
CG
ARG
5
C
CG
ARG
6
1
Y
1
C
CD
ARG
5
C
CD
ARG
6
1
Y
1
C
NE
ARG
5
C
NE
ARG
6
1
Y
1
C
CZ
ARG
5
C
CZ
ARG
6
1
Y
1
C
NH1
ARG
5
C
NH1
ARG
6
1
Y
1
C
NH2
ARG
5
C
NH2
ARG
6
1
Y
1
C
CG
LYS
13
C
CG
LYS
14
1
Y
1
C
CD
LYS
13
C
CD
LYS
14
1
Y
1
C
CE
LYS
13
C
CE
LYS
14
1
Y
1
C
NZ
LYS
13
C
NZ
LYS
14
1
Y
1
C
CG
LYS
14
C
CG
LYS
15
1
Y
1
C
CD
LYS
14
C
CD
LYS
15
1
Y
1
C
CE
LYS
14
C
CE
LYS
15
1
Y
1
C
NZ
LYS
14
C
NZ
LYS
15
1
Y
1
C
CG
LEU
16
C
CG
LEU
17
1
Y
1
C
CD1
LEU
16
C
CD1
LEU
17
1
Y
1
C
CD2
LEU
16
C
CD2
LEU
17
1
Y
1
C
CG
LEU
18
C
CG
LEU
19
1
Y
1
C
CD1
LEU
18
C
CD1
LEU
19
1
Y
1
C
CD2
LEU
18
C
CD2
LEU
19
1
Y
1
C
CG
ARG
24
C
CG
ARG
25
1
Y
1
C
CD
ARG
24
C
CD
ARG
25
1
Y
1
C
NE
ARG
24
C
NE
ARG
25
1
Y
1
C
CZ
ARG
24
C
CZ
ARG
25
1
Y
1
C
NH1
ARG
24
C
NH1
ARG
25
1
Y
1
C
NH2
ARG
24
C
NH2
ARG
25
1
Y
1
C
CG
GLU
29
C
CG
GLU
30
1
Y
1
C
CD
GLU
29
C
CD
GLU
30
1
Y
1
C
OE1
GLU
29
C
OE1
GLU
30
1
Y
1
C
OE2
GLU
29
C
OE2
GLU
30
1
Y
1
C
CG
GLN
36
C
CG
GLN
37
1
Y
1
C
CD
GLN
36
C
CD
GLN
37
1
Y
1
C
OE1
GLN
36
C
OE1
GLN
37
1
Y
1
C
NE2
GLN
36
C
NE2
GLN
37
1
Y
1
C
CG
LEU
40
C
CG
LEU
41
1
Y
1
C
CD1
LEU
40
C
CD1
LEU
41
1
Y
1
C
CD2
LEU
40
C
CD2
LEU
41
1
Y
1
C
CG
LYS
46
C
CG
LYS
47
1
Y
1
C
CD
LYS
46
C
CD
LYS
47
1
Y
1
C
CE
LYS
46
C
CE
LYS
47
1
Y
1
C
NZ
LYS
46
C
NZ
LYS
47
1
Y
1
C
CG
GLN
50
C
CG
GLN
51
1
Y
1
C
CD
GLN
50
C
CD
GLN
51
1
Y
1
C
OE1
GLN
50
C
OE1
GLN
51
1
Y
1
C
NE2
GLN
50
C
NE2
GLN
51
1
Y
1
C
CG
LYS
52
C
CG
LYS
53
1
Y
1
C
CD
LYS
52
C
CD
LYS
53
1
Y
1
C
CE
LYS
52
C
CE
LYS
53
1
Y
1
C
NZ
LYS
52
C
NZ
LYS
53
1
Y
1
C
CG
ARG
53
C
CG
ARG
54
1
Y
1
C
CD
ARG
53
C
CD
ARG
54
1
Y
1
C
NE
ARG
53
C
NE
ARG
54
1
Y
1
C
CZ
ARG
53
C
CZ
ARG
54
1
Y
1
C
NH1
ARG
53
C
NH1
ARG
54
1
Y
1
C
NH2
ARG
53
C
NH2
ARG
54
1
Y
1
C
CG
LYS
55
C
CG
LYS
56
1
Y
1
C
CD
LYS
55
C
CD
LYS
56
1
Y
1
C
CE
LYS
55
C
CE
LYS
56
1
Y
1
C
NZ
LYS
55
C
NZ
LYS
56
1
Y
1
C
CG
LYS
57
C
CG
LYS
58
1
Y
1
C
CD
LYS
57
C
CD
LYS
58
1
Y
1
C
CE
LYS
57
C
CE
LYS
58
1
Y
1
C
NZ
LYS
57
C
NZ
LYS
58
1
Y
1
C
CG
LYS
58
C
CG
LYS
59
1
Y
1
C
CD
LYS
58
C
CD
LYS
59
1
Y
1
C
CE
LYS
58
C
CE
LYS
59
1
Y
1
C
NZ
LYS
58
C
NZ
LYS
59
1
Y
1
D
CG
ARG
5
D
CG
ARG
6
1
Y
1
D
CD
ARG
5
D
CD
ARG
6
1
Y
1
D
NE
ARG
5
D
NE
ARG
6
1
Y
1
D
CZ
ARG
5
D
CZ
ARG
6
1
Y
1
D
NH1
ARG
5
D
NH1
ARG
6
1
Y
1
D
NH2
ARG
5
D
NH2
ARG
6
1
Y
1
D
CG
PHE
8
D
CG
PHE
9
1
Y
1
D
CD1
PHE
8
D
CD1
PHE
9
1
Y
1
D
CD2
PHE
8
D
CD2
PHE
9
1
Y
1
D
CE1
PHE
8
D
CE1
PHE
9
1
Y
1
D
CE2
PHE
8
D
CE2
PHE
9
1
Y
1
D
CZ
PHE
8
D
CZ
PHE
9
1
Y
1
D
CG
GLU
10
D
CG
GLU
11
1
Y
1
D
CD
GLU
10
D
CD
GLU
11
1
Y
1
D
OE1
GLU
10
D
OE1
GLU
11
1
Y
1
D
OE2
GLU
10
D
OE2
GLU
11
1
Y
1
D
CG
GLU
11
D
CG
GLU
12
1
Y
1
D
CD
GLU
11
D
CD
GLU
12
1
Y
1
D
OE1
GLU
11
D
OE1
GLU
12
1
Y
1
D
OE2
GLU
11
D
OE2
GLU
12
1
Y
1
D
CG
LYS
13
D
CG
LYS
14
1
Y
1
D
CD
LYS
13
D
CD
LYS
14
1
Y
1
D
CE
LYS
13
D
CE
LYS
14
1
Y
1
D
NZ
LYS
13
D
NZ
LYS
14
1
Y
1
D
CG
LYS
14
D
CG
LYS
15
1
Y
1
D
CD
LYS
14
D
CD
LYS
15
1
Y
1
D
CE
LYS
14
D
CE
LYS
15
1
Y
1
D
NZ
LYS
14
D
NZ
LYS
15
1
Y
1
D
CG
LEU
16
D
CG
LEU
17
1
Y
1
D
CD1
LEU
16
D
CD1
LEU
17
1
Y
1
D
CD2
LEU
16
D
CD2
LEU
17
1
Y
1
D
CG
ARG
24
D
CG
ARG
25
1
Y
1
D
CD
ARG
24
D
CD
ARG
25
1
Y
1
D
NE
ARG
24
D
NE
ARG
25
1
Y
1
D
CZ
ARG
24
D
CZ
ARG
25
1
Y
1
D
NH1
ARG
24
D
NH1
ARG
25
1
Y
1
D
NH2
ARG
24
D
NH2
ARG
25
1
Y
1
D
CG
LEU
26
D
CG
LEU
27
1
Y
1
D
CD1
LEU
26
D
CD1
LEU
27
1
Y
1
D
CD2
LEU
26
D
CD2
LEU
27
1
Y
1
D
CG
GLU
29
D
CG
GLU
30
1
Y
1
D
CD
GLU
29
D
CD
GLU
30
1
Y
1
D
OE1
GLU
29
D
OE1
GLU
30
1
Y
1
D
OE2
GLU
29
D
OE2
GLU
30
1
Y
1
D
CG
ARG
32
D
CG
ARG
33
1
Y
1
D
CD
ARG
32
D
CD
ARG
33
1
Y
1
D
NE
ARG
32
D
NE
ARG
33
1
Y
1
D
CZ
ARG
32
D
CZ
ARG
33
1
Y
1
D
NH1
ARG
32
D
NH1
ARG
33
1
Y
1
D
NH2
ARG
32
D
NH2
ARG
33
1
Y
1
D
CG
TYR
33
D
CG
TYR
34
1
Y
1
D
CD1
TYR
33
D
CD1
TYR
34
1
Y
1
D
CD2
TYR
33
D
CD2
TYR
34
1
Y
1
D
CE1
TYR
33
D
CE1
TYR
34
1
Y
1
D
CE2
TYR
33
D
CE2
TYR
34
1
Y
1
D
CZ
TYR
33
D
CZ
TYR
34
1
Y
1
D
OH
TYR
33
D
OH
TYR
34
1
Y
1
D
CG
GLN
36
D
CG
GLN
37
1
Y
1
D
CD
GLN
36
D
CD
GLN
37
1
Y
1
D
OE1
GLN
36
D
OE1
GLN
37
1
Y
1
D
NE2
GLN
36
D
NE2
GLN
37
1
Y
1
D
CG
GLN
44
D
CG
GLN
45
1
Y
1
D
CD
GLN
44
D
CD
GLN
45
1
Y
1
D
OE1
GLN
44
D
OE1
GLN
45
1
Y
1
D
NE2
GLN
44
D
NE2
GLN
45
1
Y
1
D
CG
LYS
46
D
CG
LYS
47
1
Y
1
D
CD
LYS
46
D
CD
LYS
47
1
Y
1
D
CE
LYS
46
D
CE
LYS
47
1
Y
1
D
NZ
LYS
46
D
NZ
LYS
47
1
Y
1
D
CG
GLN
50
D
CG
GLN
51
1
Y
1
D
CD
GLN
50
D
CD
GLN
51
1
Y
1
D
OE1
GLN
50
D
OE1
GLN
51
1
Y
1
D
NE2
GLN
50
D
NE2
GLN
51
1
Y
1
D
CG
LYS
52
D
CG
LYS
53
1
Y
1
D
CD
LYS
52
D
CD
LYS
53
1
Y
1
D
CE
LYS
52
D
CE
LYS
53
1
Y
1
D
NZ
LYS
52
D
NZ
LYS
53
1
Y
1
D
CG
ARG
53
D
CG
ARG
54
1
Y
1
D
CD
ARG
53
D
CD
ARG
54
1
Y
1
D
NE
ARG
53
D
NE
ARG
54
1
Y
1
D
CZ
ARG
53
D
CZ
ARG
54
1
Y
1
D
NH1
ARG
53
D
NH1
ARG
54
1
Y
1
D
NH2
ARG
53
D
NH2
ARG
54
1
Y
1
D
CG
LYS
55
D
CG
LYS
56
1
Y
1
D
CD
LYS
55
D
CD
LYS
56
1
Y
1
D
CE
LYS
55
D
CE
LYS
56
1
Y
1
D
NZ
LYS
55
D
NZ
LYS
56
1
Y
1
D
CG
LYS
57
D
CG
LYS
58
1
Y
1
D
CD
LYS
57
D
CD
LYS
58
1
Y
1
D
CE
LYS
57
D
CE
LYS
58
1
Y
1
D
NZ
LYS
57
D
NZ
LYS
58
1
Y
1
D
CG
LYS
58
D
CG
LYS
59
1
Y
1
D
CD
LYS
58
D
CD
LYS
59
1
Y
1
D
CE
LYS
58
D
CE
LYS
59
1
Y
1
D
NZ
LYS
58
D
NZ
LYS
59
1
Y
1
A
MET
0
A
MET
1
1
Y
1
A
GLU
1
A
GLU
2
1
Y
1
A
LYS
2
A
LYS
3
1
Y
1
A
ARG
3
A
ARG
4
1
Y
1
A
PRO
4
A
PRO
5
1
Y
1
A
THR
60
A
THR
61
1
Y
1
A
GLY
61
A
GLY
62
1
Y
1
A
GLY
62
A
GLY
63
1
Y
1
A
SER
63
A
SER
64
1
Y
1
A
GLY
64
A
GLY
65
1
Y
1
A
GLY
65
A
GLY
66
1
Y
1
A
HIS
66
A
HIS
67
1
Y
1
A
HIS
67
A
HIS
68
1
Y
1
A
HIS
68
A
HIS
69
1
Y
1
A
HIS
69
A
HIS
70
1
Y
1
A
HIS
70
A
HIS
71
1
Y
1
A
HIS
71
A
HIS
72
1
Y
1
B
MET
0
B
MET
1
1
Y
1
B
GLU
1
B
GLU
2
1
Y
1
B
LYS
2
B
LYS
3
1
Y
1
B
ARG
3
B
ARG
4
1
Y
1
B
PRO
4
B
PRO
5
1
Y
1
B
ARG
5
B
ARG
6
1
Y
1
B
THR
60
B
THR
61
1
Y
1
B
GLY
61
B
GLY
62
1
Y
1
B
GLY
62
B
GLY
63
1
Y
1
B
SER
63
B
SER
64
1
Y
1
B
GLY
64
B
GLY
65
1
Y
1
B
GLY
65
B
GLY
66
1
Y
1
B
HIS
66
B
HIS
67
1
Y
1
B
HIS
67
B
HIS
68
1
Y
1
B
HIS
68
B
HIS
69
1
Y
1
B
HIS
69
B
HIS
70
1
Y
1
B
HIS
70
B
HIS
71
1
Y
1
B
HIS
71
B
HIS
72
1
Y
1
C
MET
0
C
MET
1
1
Y
1
C
GLU
1
C
GLU
2
1
Y
1
C
LYS
2
C
LYS
3
1
Y
1
C
ARG
3
C
ARG
4
1
Y
1
C
PRO
4
C
PRO
5
1
Y
1
C
GLY
62
C
GLY
63
1
Y
1
C
SER
63
C
SER
64
1
Y
1
C
GLY
64
C
GLY
65
1
Y
1
C
GLY
65
C
GLY
66
1
Y
1
C
HIS
66
C
HIS
67
1
Y
1
C
HIS
67
C
HIS
68
1
Y
1
C
HIS
68
C
HIS
69
1
Y
1
C
HIS
69
C
HIS
70
1
Y
1
C
HIS
70
C
HIS
71
1
Y
1
C
HIS
71
C
HIS
72
1
Y
1
D
MET
0
D
MET
1
1
Y
1
D
GLU
1
D
GLU
2
1
Y
1
D
LYS
2
D
LYS
3
1
Y
1
D
ARG
3
D
ARG
4
1
Y
1
D
PRO
4
D
PRO
5
1
Y
1
D
THR
60
D
THR
61
1
Y
1
D
GLY
61
D
GLY
62
1
Y
1
D
GLY
62
D
GLY
63
1
Y
1
D
SER
63
D
SER
64
1
Y
1
D
GLY
64
D
GLY
65
1
Y
1
D
GLY
65
D
GLY
66
1
Y
1
D
HIS
66
D
HIS
67
1
Y
1
D
HIS
67
D
HIS
68
1
Y
1
D
HIS
68
D
HIS
69
1
Y
1
D
HIS
69
D
HIS
70
1
Y
1
D
HIS
70
D
HIS
71
1
Y
1
D
HIS
71
D
HIS
72
1
Y
1
E
DC
16
E
DC
16
1
Y
1
D
H
OG1
OP1
THR
DA
6
6
2.13
1
B
B
OG
O
SER
LEU
35
40
2.18
1
2.67
0.30
108.30
110.97
E
E
E
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
-6.01
0.90
105.70
99.69
E
E
E
O5'
P
OP2
DA
DA
DA
10
10
10
N
1
2.13
0.30
108.30
110.43
E
E
E
O4'
C1'
N9
DA
DA
DA
11
11
11
N
1
1.95
0.30
108.30
110.25
G
G
G
O4'
C1'
N1
DT
DT
DT
2
2
2
N
1
2.01
0.30
108.30
110.31
G
G
G
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
3.18
0.30
108.30
111.48
G
G
G
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
1.82
0.30
108.30
110.12
H
H
H
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
G
G
O3'
C3'
DT
DT
8
8
-0.062
0.006
1.419
1.357
N
1
C
SER
59
-136.43
-64.26
1
C
THR
60
179.43
-176.43
0.322
0.264
0.270
3.20
36.35
1136
11351
10.010
99.8
0.580
1
1.350
MOLECULAR REPLACEMENT
39.310
0.90
1.11
PDB ENTRY 3HHD
ML
FLAT BULK SOLVENT MODEL
3.20
36.35
0
2903
0
1293
1610
0.012
3110
1.320
4496
26.745
1133
0.061
499
0.010
361
0.4943
0.3990
3.3459
137
1237
100.00
0.4152
0.3392
3.5222
138
1235
99.00
0.4099
0.3612
3.7426
138
1250
100.00
0.3749
0.3294
4.0313
139
1246
100.00
0.3282
0.2974
4.4363
141
1268
100.00
0.3560
0.2834
5.0768
143
1287
100.00
0.3307
0.2959
6.3905
145
1304
100.00
0.2722
0.2029
36.3554
155
1388
100.00
3.100
39.200
4QTR
15510
0.022
1
102.5
10.7
2.86
3.02
6.972
1
9.7
88.5
data collection
CrystalClear
phasing
PHASES
refinement
PHENIX
(phenix.refine: 1.9_1692)
data reduction
DENZO
data scaling
SCALA
Computational design of co-assembling protein-DNA nanowires
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
SER
9
A
SER
10
HELX_P
A
ASP
23
A
ASP
24
1
1
15
A
THR
27
A
THR
28
HELX_P
A
LEU
38
A
LEU
39
1
2
12
A
ASN
41
A
ASN
42
HELX_P
A
LYS
57
A
LYS
58
1
3
17
B
SER
9
B
SER
10
HELX_P
B
ASP
23
B
ASP
24
1
4
15
B
THR
27
B
THR
28
HELX_P
B
GLY
39
B
GLY
40
1
5
13
B
ASN
41
B
ASN
42
HELX_P
B
SER
59
B
SER
60
1
6
19
C
SER
9
C
SER
10
HELX_P
C
ASP
23
C
ASP
24
1
7
15
C
THR
27
C
THR
28
HELX_P
C
GLY
39
C
GLY
40
1
8
13
C
ASN
41
C
ASN
42
HELX_P
C
LYS
57
C
LYS
58
1
9
17
D
SER
9
D
SER
10
HELX_P
D
ASP
23
D
ASP
24
1
10
15
D
THR
27
D
THR
28
HELX_P
D
GLY
39
D
GLY
40
1
11
13
D
ASN
41
D
ASN
42
HELX_P
D
LYS
58
D
LYS
59
1
12
18
hydrog
TYPE_8_PAIR
E
DG
1
E
N1
DG
1
1_555
F
DA
16
G
N1
DA
16
1_555
hydrog
TYPE_8_PAIR
E
DG
1
E
O6
DG
1
1_555
F
DA
16
G
N6
DA
16
1_555
hydrog
WATSON-CRICK
E
DT
2
E
N3
DT
2
1_555
F
DA
16
G
N1
DA
16
1_555
hydrog
WATSON-CRICK
E
DT
2
E
O4
DT
2
1_555
F
DA
16
G
N6
DA
16
1_555
hydrog
WATSON-CRICK
E
DG
3
E
N1
DG
3
1_555
F
DC
15
G
N3
DC
15
1_555
hydrog
WATSON-CRICK
E
DG
3
E
N2
DG
3
1_555
F
DC
15
G
O2
DC
15
1_555
hydrog
WATSON-CRICK
E
DG
3
E
O6
DG
3
1_555
F
DC
15
G
N4
DC
15
1_555
hydrog
WATSON-CRICK
E
DA
5
E
N1
DA
5
1_555
F
DT
13
G
N3
DT
13
1_555
hydrog
WATSON-CRICK
E
DA
5
E
N6
DA
5
1_555
F
DT
13
G
O4
DT
13
1_555
hydrog
WATSON-CRICK
E
DA
6
E
N1
DA
6
1_555
F
DT
12
G
N3
DT
12
1_555
hydrog
WATSON-CRICK
E
DA
6
E
N6
DA
6
1_555
F
DT
12
G
O4
DT
12
1_555
hydrog
WATSON-CRICK
E
DT
7
E
N3
DT
7
1_555
F
DA
11
G
N1
DA
11
1_555
hydrog
WATSON-CRICK
E
DT
7
E
O4
DT
7
1_555
F
DA
11
G
N6
DA
11
1_555
hydrog
WATSON-CRICK
E
DT
8
E
N3
DT
8
1_555
F
DA
10
G
N1
DA
10
1_555
hydrog
WATSON-CRICK
E
DT
8
E
O4
DT
8
1_555
F
DA
10
G
N6
DA
10
1_555
hydrog
WATSON-CRICK
E
DA
10
E
N1
DA
10
1_555
F
DT
8
G
N3
DT
8
1_555
hydrog
WATSON-CRICK
E
DA
10
E
N6
DA
10
1_555
F
DT
8
G
O4
DT
8
1_555
hydrog
WATSON-CRICK
E
DA
11
E
N1
DA
11
1_555
F
DT
7
G
N3
DT
7
1_555
hydrog
WATSON-CRICK
E
DA
11
E
N6
DA
11
1_555
F
DT
7
G
O4
DT
7
1_555
hydrog
DT-DA PAIR
E
DT
12
E
O4
DT
12
1_555
F
DA
5
G
N6
DA
5
1_555
hydrog
WATSON-CRICK
E
DT
12
E
N3
DT
12
1_555
F
DA
6
G
N1
DA
6
1_555
hydrog
WATSON-CRICK
E
DT
12
E
O4
DT
12
1_555
F
DA
6
G
N6
DA
6
1_555
hydrog
DT-DA PAIR
E
DT
13
E
O4
DT
13
1_555
F
DA
4
G
N6
DA
4
1_555
hydrog
WATSON-CRICK
E
DT
13
E
N3
DT
13
1_555
F
DA
5
G
N1
DA
5
1_555
hydrog
WATSON-CRICK
E
DT
13
E
O4
DT
13
1_555
F
DA
5
G
N6
DA
5
1_555
hydrog
WATSON-CRICK
E
DT
14
E
N3
DT
14
1_555
F
DA
4
G
N1
DA
4
1_555
hydrog
WATSON-CRICK
E
DT
14
E
O4
DT
14
1_555
F
DA
4
G
N6
DA
4
1_555
hydrog
WATSON-CRICK
E
DC
15
E
N3
DC
15
1_555
F
DG
3
G
N1
DG
3
1_555
hydrog
WATSON-CRICK
E
DC
15
E
N4
DC
15
1_555
F
DG
3
G
O6
DG
3
1_555
hydrog
WATSON-CRICK
E
DC
15
E
O2
DC
15
1_555
F
DG
3
G
N2
DG
3
1_555
hydrog
DT-DC MISPAIR
G
DT
2
F
O4
DT
2
1_555
H
DC
15
H
N4
DC
15
1_555
hydrog
WATSON-CRICK
G
DT
2
F
N3
DT
2
1_555
H
DA
16
H
N1
DA
16
1_555
hydrog
WATSON-CRICK
G
DT
2
F
O4
DT
2
1_555
H
DA
16
H
N6
DA
16
1_555
hydrog
WATSON-CRICK
G
DG
3
F
N1
DG
3
1_555
H
DC
15
H
N3
DC
15
1_555
hydrog
WATSON-CRICK
G
DG
3
F
N2
DG
3
1_555
H
DC
15
H
O2
DC
15
1_555
hydrog
WATSON-CRICK
G
DG
3
F
O6
DG
3
1_555
H
DC
15
H
N4
DC
15
1_555
hydrog
DT-DA PAIR
G
DT
4
F
N3
DT
4
1_555
H
DA
14
H
N1
DA
14
1_555
hydrog
WATSON-CRICK
G
DA
5
F
N1
DA
5
1_555
H
DT
13
H
N3
DT
13
1_555
hydrog
WATSON-CRICK
G
DA
5
F
N6
DA
5
1_555
H
DT
13
H
O4
DT
13
1_555
hydrog
WATSON-CRICK
G
DA
6
F
N1
DA
6
1_555
H
DT
12
H
N3
DT
12
1_555
hydrog
WATSON-CRICK
G
DA
6
F
N6
DA
6
1_555
H
DT
12
H
O4
DT
12
1_555
hydrog
DT-DA PAIR
G
DT
7
F
O4
DT
7
1_555
H
DA
10
H
N6
DA
10
1_555
hydrog
WATSON-CRICK
G
DT
7
F
N3
DT
7
1_555
H
DA
11
H
N1
DA
11
1_555
hydrog
WATSON-CRICK
G
DT
7
F
O4
DT
7
1_555
H
DA
11
H
N6
DA
11
1_555
hydrog
WATSON-CRICK
G
DT
8
F
N3
DT
8
1_555
H
DA
10
H
N1
DA
10
1_555
hydrog
WATSON-CRICK
G
DT
8
F
O4
DT
8
1_555
H
DA
10
H
N6
DA
10
1_555
hydrog
WATSON-CRICK
G
DT
9
F
N3
DT
9
1_555
H
DA
9
H
N1
DA
9
1_555
hydrog
WATSON-CRICK
G
DT
9
F
O4
DT
9
1_555
H
DA
9
H
N6
DA
9
1_555
hydrog
WATSON-CRICK
G
DA
10
F
N1
DA
10
1_555
H
DT
8
H
N3
DT
8
1_555
hydrog
WATSON-CRICK
G
DA
10
F
N6
DA
10
1_555
H
DT
8
H
O4
DT
8
1_555
hydrog
WATSON-CRICK
G
DA
11
F
N1
DA
11
1_555
H
DT
7
H
N3
DT
7
1_555
hydrog
WATSON-CRICK
G
DA
11
F
N6
DA
11
1_555
H
DT
7
H
O4
DT
7
1_555
hydrog
DT-DA PAIR
G
DT
12
F
O4
DT
12
1_555
H
DA
5
H
N6
DA
5
1_555
hydrog
WATSON-CRICK
G
DT
12
F
N3
DT
12
1_555
H
DA
6
H
N1
DA
6
1_555
hydrog
WATSON-CRICK
G
DT
12
F
O4
DT
12
1_555
H
DA
6
H
N6
DA
6
1_555
hydrog
DT-DA PAIR
G
DT
13
F
O4
DT
13
1_555
H
DA
4
H
N6
DA
4
1_555
hydrog
WATSON-CRICK
G
DT
13
F
N3
DT
13
1_555
H
DA
5
H
N1
DA
5
1_555
hydrog
WATSON-CRICK
G
DT
13
F
O4
DT
13
1_555
H
DA
5
H
N6
DA
5
1_555
hydrog
DT-DG MISPAIR
G
DT
14
F
N3
DT
14
1_555
H
DG
3
H
O6
DG
3
1_555
hydrog
DT-DA PAIR
G
DT
14
F
N3
DT
14
1_555
H
DA
4
H
N1
DA
4
1_555
hydrog
WATSON-CRICK
G
DC
15
F
N3
DC
15
1_555
H
DG
3
H
N1
DG
3
1_555
hydrog
WATSON-CRICK
G
DC
15
F
N4
DC
15
1_555
H
DG
3
H
O6
DG
3
1_555
hydrog
WATSON-CRICK
G
DC
15
F
O2
DC
15
1_555
H
DG
3
H
N2
DG
3
1_555
hydrog
WATSON-CRICK
G
DC
16
F
N3
DC
16
1_555
H
DG
2
H
N1
DG
2
1_555
hydrog
WATSON-CRICK
G
DC
16
F
N4
DC
16
1_555
H
DG
2
H
O6
DG
2
1_555
hydrog
WATSON-CRICK
G
DC
16
F
O2
DC
16
1_555
H
DG
2
H
N2
DG
2
1_555
de novo design/DNA
helix-turn-helix, DNA-binding protein, double-stranded DNA, de novo design-DNA complex
4QTR
PDB
1
4QTR
4QTR
PDB
2
4QTR
4QTR
PDB
3
4QTR
0
71
4QTR
0
71
4QTR
A
1
1
72
0
71
4QTR
0
71
4QTR
B
1
1
72
0
71
4QTR
0
71
4QTR
C
1
1
72
0
71
4QTR
0
71
4QTR
D
1
1
72
1
16
4QTR
1
16
4QTR
E
2
1
16
1
16
4QTR
1
16
4QTR
G
2
1
16
1
16
4QTR
1
16
4QTR
F
3
1
16
1
16
4QTR
1
16
4QTR
H
3
1
16
93
P 42 2 2