0.015684
0.009055
0.000000
0.000000
0.018110
0.000000
0.000000
0.000000
0.005329
0.00000
0.00000
0.00000
Sreekanth, R.
Yoon, H.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
63.760
63.760
187.652
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C3 H5 N2 1
69.085
IMIDAZOLE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
Y
183
N
N
Y
184
N
C
Y
185
N
N
Y
186
N
C
Y
187
N
C
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
S
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
N
305
N
O
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
R
C
N
319
N
O
N
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
N
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
N
369
N
O
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
sing
N
175
N
sing
Y
176
N
doub
N
177
N
sing
Y
178
N
sing
N
179
N
sing
Y
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
Y
258
N
doub
Y
259
N
sing
Y
260
N
sing
N
261
N
sing
Y
262
N
doub
N
263
N
sing
Y
264
N
doub
N
265
N
sing
Y
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
Y
327
N
doub
Y
328
N
sing
Y
329
N
sing
N
330
N
sing
Y
331
N
doub
Y
332
N
sing
Y
333
N
sing
N
334
N
sing
Y
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
Y
355
N
doub
Y
356
N
sing
Y
357
N
sing
N
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
US
Proteins
PSFGEY
0867
1097-0134
83
1262
1272
10.1002/prot.24816
25907960
Bh3 induced conformational changes in Bcl-Xl revealed by crystal structure and comparative analysis.
2015
10.2210/pdb4qve/pdb
pdb_00004qve
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2013-12-13
ADSC QUANTUM 315
Graphite
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
BL13B1
NSRRC
1.0000
SYNCHROTRON
NSRRC BEAMLINE BL13B1
19313.217
Bcl-2-like protein 1
UNP residues 1-209
1
man
polymer
3693.111
Peptide from BH3-interacting domain death agonist
BID BH3, UNP RESIDUES 76-109
1
syn
polymer
69.085
IMIDAZOLE
1
syn
non-polymer
18.015
water
136
nat
water
Bcl2-L-1, Apoptosis regulator Bcl-X
p22 BID, BID, BH3-interacting domain death agonist p15, p15 BID, BH3-interacting domain death agonist p13, p13 BID, BH3-interacting domain death agonist p11, p11 BID
no
no
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAY
QSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAA
AESRKGQER
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAY
QSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAA
AESRKGQER
A
polypeptide(L)
no
no
SESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGL
SESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGL
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
BCL2L1, BCL2L, BCLX
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)
Plasmid
pETSUMO
1
2.39
48.60
VAPOR DIFFUSION, HANGING DROP
10.5
2.0M Ammonium Sulphate, 0.2M Lithium Sulphate, 0.1M CAPS pH 10.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
citation
database_2
pdbx_struct_special_symmetry
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Database references
Derived calculations
Data collection
Refinement description
1
0
2015-06-10
1
1
2022-08-24
1
2
2023-11-08
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.title
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2014-07-14
REL
REL
IMD
IMIDAZOLE
HOH
water
This BID BH3 sequence occurs naturally in humans
9606
human
Homo sapiens
sample
4EHR
PDB
experimental model
IMD
401
3
IMD
IMD
401
B
HOH
2
4
HOH
HOH
301
A
HOH
4
4
HOH
HOH
302
A
HOH
6
4
HOH
HOH
303
A
HOH
8
4
HOH
HOH
304
A
HOH
9
4
HOH
HOH
305
A
HOH
10
4
HOH
HOH
306
A
HOH
11
4
HOH
HOH
307
A
HOH
12
4
HOH
HOH
308
A
HOH
13
4
HOH
HOH
309
A
HOH
14
4
HOH
HOH
310
A
HOH
15
4
HOH
HOH
311
A
HOH
16
4
HOH
HOH
312
A
HOH
19
4
HOH
HOH
313
A
HOH
20
4
HOH
HOH
314
A
HOH
21
4
HOH
HOH
315
A
HOH
22
4
HOH
HOH
316
A
HOH
23
4
HOH
HOH
317
A
HOH
25
4
HOH
HOH
318
A
HOH
27
4
HOH
HOH
319
A
HOH
28
4
HOH
HOH
320
A
HOH
29
4
HOH
HOH
321
A
HOH
30
4
HOH
HOH
322
A
HOH
31
4
HOH
HOH
323
A
HOH
32
4
HOH
HOH
324
A
HOH
33
4
HOH
HOH
325
A
HOH
34
4
HOH
HOH
326
A
HOH
35
4
HOH
HOH
327
A
HOH
36
4
HOH
HOH
328
A
HOH
37
4
HOH
HOH
329
A
HOH
39
4
HOH
HOH
330
A
HOH
40
4
HOH
HOH
331
A
HOH
41
4
HOH
HOH
332
A
HOH
42
4
HOH
HOH
333
A
HOH
44
4
HOH
HOH
334
A
HOH
46
4
HOH
HOH
335
A
HOH
51
4
HOH
HOH
336
A
HOH
52
4
HOH
HOH
337
A
HOH
53
4
HOH
HOH
338
A
HOH
55
4
HOH
HOH
339
A
HOH
57
4
HOH
HOH
340
A
HOH
58
4
HOH
HOH
341
A
HOH
59
4
HOH
HOH
342
A
HOH
63
4
HOH
HOH
343
A
HOH
68
4
HOH
HOH
344
A
HOH
69
4
HOH
HOH
345
A
HOH
70
4
HOH
HOH
346
A
HOH
74
4
HOH
HOH
347
A
HOH
76
4
HOH
HOH
348
A
HOH
80
4
HOH
HOH
349
A
HOH
83
4
HOH
HOH
350
A
HOH
91
4
HOH
HOH
351
A
HOH
92
4
HOH
HOH
352
A
HOH
96
4
HOH
HOH
353
A
HOH
97
4
HOH
HOH
354
A
HOH
99
4
HOH
HOH
355
A
HOH
106
4
HOH
HOH
356
A
HOH
114
4
HOH
HOH
357
A
HOH
126
4
HOH
HOH
358
A
HOH
131
4
HOH
HOH
359
A
HOH
145
4
HOH
HOH
360
A
HOH
146
4
HOH
HOH
361
A
HOH
147
4
HOH
HOH
362
A
HOH
150
4
HOH
HOH
363
A
HOH
152
4
HOH
HOH
364
A
HOH
154
4
HOH
HOH
365
A
HOH
155
4
HOH
HOH
366
A
HOH
156
4
HOH
HOH
367
A
HOH
157
4
HOH
HOH
368
A
HOH
158
4
HOH
HOH
369
A
HOH
159
4
HOH
HOH
370
A
HOH
160
4
HOH
HOH
371
A
HOH
163
4
HOH
HOH
372
A
HOH
167
4
HOH
HOH
373
A
HOH
168
4
HOH
HOH
374
A
HOH
169
4
HOH
HOH
375
A
HOH
170
4
HOH
HOH
376
A
HOH
171
4
HOH
HOH
377
A
HOH
172
4
HOH
HOH
378
A
HOH
174
4
HOH
HOH
379
A
HOH
175
4
HOH
HOH
380
A
HOH
176
4
HOH
HOH
381
A
HOH
178
4
HOH
HOH
382
A
HOH
179
4
HOH
HOH
383
A
HOH
182
4
HOH
HOH
384
A
HOH
183
4
HOH
HOH
385
A
HOH
184
4
HOH
HOH
386
A
HOH
185
4
HOH
HOH
387
A
HOH
187
4
HOH
HOH
388
A
HOH
190
4
HOH
HOH
389
A
HOH
191
4
HOH
HOH
390
A
HOH
192
4
HOH
HOH
391
A
HOH
193
4
HOH
HOH
392
A
HOH
194
4
HOH
HOH
393
A
HOH
196
4
HOH
HOH
394
A
HOH
198
4
HOH
HOH
395
A
HOH
199
4
HOH
HOH
396
A
HOH
200
4
HOH
HOH
397
A
HOH
201
4
HOH
HOH
398
A
HOH
202
4
HOH
HOH
399
A
HOH
211
4
HOH
HOH
400
A
HOH
216
4
HOH
HOH
401
A
HOH
217
4
HOH
HOH
402
A
HOH
219
4
HOH
HOH
403
A
HOH
221
4
HOH
HOH
404
A
HOH
227
4
HOH
HOH
405
A
HOH
230
4
HOH
HOH
406
A
HOH
238
4
HOH
HOH
407
A
HOH
254
4
HOH
HOH
408
A
HOH
264
4
HOH
HOH
409
A
HOH
294
4
HOH
HOH
410
A
HOH
304
4
HOH
HOH
411
A
HOH
322
4
HOH
HOH
412
A
HOH
327
4
HOH
HOH
413
A
HOH
328
4
HOH
HOH
414
A
HOH
329
4
HOH
HOH
415
A
HOH
330
4
HOH
HOH
416
A
HOH
331
4
HOH
HOH
417
A
HOH
332
4
HOH
HOH
418
A
HOH
335
4
HOH
HOH
419
A
HOH
186
4
HOH
HOH
501
B
HOH
1
4
HOH
HOH
502
B
HOH
3
4
HOH
HOH
503
B
HOH
17
4
HOH
HOH
504
B
HOH
93
4
HOH
HOH
505
B
HOH
140
4
HOH
HOH
506
B
HOH
161
4
HOH
HOH
507
B
HOH
162
4
HOH
HOH
508
B
HOH
164
4
HOH
HOH
509
B
HOH
165
4
HOH
HOH
510
B
HOH
166
4
HOH
HOH
511
B
HOH
180
4
HOH
HOH
512
B
HOH
189
4
HOH
HOH
513
B
HOH
212
4
HOH
HOH
514
B
HOH
214
4
HOH
HOH
515
B
HOH
226
4
HOH
HOH
516
B
HOH
339
4
HOH
HOH
517
B
n
1
1
A
n
2
2
A
n
3
3
A
SER
4
n
4
SER
4
A
ASN
5
n
5
ASN
5
A
ARG
6
n
6
ARG
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
VAL
9
n
9
VAL
9
A
VAL
10
n
10
VAL
10
A
ASP
11
n
11
ASP
11
A
PHE
12
n
12
PHE
12
A
LEU
13
n
13
LEU
13
A
SER
14
n
14
SER
14
A
TYR
15
n
15
TYR
15
A
LYS
16
n
16
LYS
16
A
LEU
17
n
17
LEU
17
A
SER
18
n
18
SER
18
A
GLN
19
n
19
GLN
19
A
LYS
20
n
20
LYS
20
A
GLY
21
n
21
GLY
21
A
TYR
22
n
22
TYR
22
A
SER
23
n
23
SER
23
A
TRP
24
n
24
TRP
24
A
SER
25
n
25
SER
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
n
31
31
A
n
32
32
A
n
33
33
A
n
34
34
A
n
35
35
A
n
36
36
A
n
37
37
A
n
38
38
A
n
39
39
A
n
40
40
A
n
41
41
A
n
42
42
A
n
43
43
A
n
44
44
A
ALA
85
n
45
ALA
85
A
VAL
86
n
46
VAL
86
A
LYS
87
n
47
LYS
87
A
GLN
88
n
48
GLN
88
A
ALA
89
n
49
ALA
89
A
LEU
90
n
50
LEU
90
A
ARG
91
n
51
ARG
91
A
GLU
92
n
52
GLU
92
A
ALA
93
n
53
ALA
93
A
GLY
94
n
54
GLY
94
A
ASP
95
n
55
ASP
95
A
GLU
96
n
56
GLU
96
A
PHE
97
n
57
PHE
97
A
GLU
98
n
58
GLU
98
A
LEU
99
n
59
LEU
99
A
ARG
100
n
60
ARG
100
A
TYR
101
n
61
TYR
101
A
ARG
102
n
62
ARG
102
A
ARG
103
n
63
ARG
103
A
ALA
104
n
64
ALA
104
A
PHE
105
n
65
PHE
105
A
SER
106
n
66
SER
106
A
ASP
107
n
67
ASP
107
A
LEU
108
n
68
LEU
108
A
THR
109
n
69
THR
109
A
SER
110
n
70
SER
110
A
GLN
111
n
71
GLN
111
A
LEU
112
n
72
LEU
112
A
HIS
113
n
73
HIS
113
A
ILE
114
n
74
ILE
114
A
THR
115
n
75
THR
115
A
PRO
116
n
76
PRO
116
A
GLY
117
n
77
GLY
117
A
THR
118
n
78
THR
118
A
ALA
119
n
79
ALA
119
A
TYR
120
n
80
TYR
120
A
GLN
121
n
81
GLN
121
A
SER
122
n
82
SER
122
A
PHE
123
n
83
PHE
123
A
GLU
124
n
84
GLU
124
A
GLN
125
n
85
GLN
125
A
VAL
126
n
86
VAL
126
A
VAL
127
n
87
VAL
127
A
ASN
128
n
88
ASN
128
A
GLU
129
n
89
GLU
129
A
LEU
130
n
90
LEU
130
A
PHE
131
n
91
PHE
131
A
ARG
132
n
92
ARG
132
A
ASP
133
n
93
ASP
133
A
GLY
134
n
94
GLY
134
A
VAL
135
n
95
VAL
135
A
ASN
136
n
96
ASN
136
A
TRP
137
n
97
TRP
137
A
GLY
138
n
98
GLY
138
A
ARG
139
n
99
ARG
139
A
ILE
140
n
100
ILE
140
A
VAL
141
n
101
VAL
141
A
ALA
142
n
102
ALA
142
A
PHE
143
n
103
PHE
143
A
PHE
144
n
104
PHE
144
A
SER
145
n
105
SER
145
A
PHE
146
n
106
PHE
146
A
GLY
147
n
107
GLY
147
A
GLY
148
n
108
GLY
148
A
ALA
149
n
109
ALA
149
A
LEU
150
n
110
LEU
150
A
CYS
151
n
111
CYS
151
A
VAL
152
n
112
VAL
152
A
GLU
153
n
113
GLU
153
A
SER
154
n
114
SER
154
A
VAL
155
n
115
VAL
155
A
ASP
156
n
116
ASP
156
A
LYS
157
n
117
LYS
157
A
GLU
158
n
118
GLU
158
A
MET
159
n
119
MET
159
A
GLN
160
n
120
GLN
160
A
VAL
161
n
121
VAL
161
A
LEU
162
n
122
LEU
162
A
VAL
163
n
123
VAL
163
A
SER
164
n
124
SER
164
A
ARG
165
n
125
ARG
165
A
ILE
166
n
126
ILE
166
A
ALA
167
n
127
ALA
167
A
ALA
168
n
128
ALA
168
A
TRP
169
n
129
TRP
169
A
MET
170
n
130
MET
170
A
ALA
171
n
131
ALA
171
A
THR
172
n
132
THR
172
A
TYR
173
n
133
TYR
173
A
LEU
174
n
134
LEU
174
A
ASN
175
n
135
ASN
175
A
ASP
176
n
136
ASP
176
A
HIS
177
n
137
HIS
177
A
LEU
178
n
138
LEU
178
A
GLU
179
n
139
GLU
179
A
PRO
180
n
140
PRO
180
A
TRP
181
n
141
TRP
181
A
ILE
182
n
142
ILE
182
A
GLN
183
n
143
GLN
183
A
GLU
184
n
144
GLU
184
A
ASN
185
n
145
ASN
185
A
GLY
186
n
146
GLY
186
A
GLY
187
n
147
GLY
187
A
TRP
188
n
148
TRP
188
A
ASP
189
n
149
ASP
189
A
THR
190
n
150
THR
190
A
PHE
191
n
151
PHE
191
A
VAL
192
n
152
VAL
192
A
GLU
193
n
153
GLU
193
A
LEU
194
n
154
LEU
194
A
TYR
195
n
155
TYR
195
A
GLY
196
n
156
GLY
196
A
ASN
197
n
157
ASN
197
A
ASN
198
n
158
ASN
198
A
n
159
199
A
n
160
200
A
n
161
201
A
n
162
202
A
n
163
203
A
n
164
204
A
n
165
205
A
n
166
206
A
n
167
207
A
n
168
208
A
n
169
209
A
n
1
76
B
GLU
77
n
2
GLU
77
B
SER
78
n
3
SER
78
B
GLN
79
n
4
GLN
79
B
GLU
80
n
5
GLU
80
B
ASP
81
n
6
ASP
81
B
ILE
82
n
7
ILE
82
B
ILE
83
n
8
ILE
83
B
ARG
84
n
9
ARG
84
B
ASN
85
n
10
ASN
85
B
ILE
86
n
11
ILE
86
B
ALA
87
n
12
ALA
87
B
ARG
88
n
13
ARG
88
B
HIS
89
n
14
HIS
89
B
LEU
90
n
15
LEU
90
B
ALA
91
n
16
ALA
91
B
GLN
92
n
17
GLN
92
B
VAL
93
n
18
VAL
93
B
GLY
94
n
19
GLY
94
B
ASP
95
n
20
ASP
95
B
SER
96
n
21
SER
96
B
MET
97
n
22
MET
97
B
ASP
98
n
23
ASP
98
B
ARG
99
n
24
ARG
99
B
SER
100
n
25
SER
100
B
ILE
101
n
26
ILE
101
B
PRO
102
n
27
PRO
102
B
PRO
103
n
28
PRO
103
B
GLY
104
n
29
GLY
104
B
n
30
105
B
n
31
106
B
n
32
107
B
n
33
108
B
n
34
109
B
author_and_software_defined_assembly
PISA
2
dimeric
2340
-16
8450
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HIS
113
A
HIS
73
1
A
HOH
394
D
HOH
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
GLN
3
A
GLN
3
1
Y
1
A
GLN
26
A
GLN
26
1
Y
1
A
PHE
27
A
PHE
27
1
Y
1
A
SER
28
A
SER
28
1
Y
1
A
ASP
29
A
ASP
29
1
Y
1
A
VAL
30
A
VAL
30
1
Y
1
A
GLU
31
A
GLU
31
1
Y
1
A
GLU
32
A
GLU
32
1
Y
1
A
ASN
33
A
ASN
33
1
Y
1
A
ARG
34
A
ARG
34
1
Y
1
A
THR
35
A
THR
35
1
Y
1
A
GLU
36
A
GLU
36
1
Y
1
A
ALA
37
A
ALA
37
1
Y
1
A
PRO
38
A
PRO
38
1
Y
1
A
GLU
39
A
GLU
39
1
Y
1
A
GLY
40
A
GLY
40
1
Y
1
A
THR
41
A
THR
41
1
Y
1
A
GLU
42
A
GLU
42
1
Y
1
A
SER
43
A
SER
43
1
Y
1
A
GLU
44
A
GLU
44
1
Y
1
A
ALA
199
A
ALA
159
1
Y
1
A
ALA
200
A
ALA
160
1
Y
1
A
ALA
201
A
ALA
161
1
Y
1
A
GLU
202
A
GLU
162
1
Y
1
A
SER
203
A
SER
163
1
Y
1
A
ARG
204
A
ARG
164
1
Y
1
A
LYS
205
A
LYS
165
1
Y
1
A
GLY
206
A
GLY
166
1
Y
1
A
GLN
207
A
GLN
167
1
Y
1
A
GLU
208
A
GLU
168
1
Y
1
A
ARG
209
A
ARG
169
1
Y
1
B
SER
76
B
SER
1
1
Y
1
B
LEU
105
B
LEU
30
1
Y
1
B
VAL
106
B
VAL
31
1
Y
1
B
ASN
107
B
ASN
32
1
Y
1
B
GLY
108
B
GLY
33
1
Y
1
B
LEU
109
B
LEU
34
1
Y
1
A
HIS
113
A
46.07
72.40
1
A
HIS
113
B
38.03
73.07
0.2239
0.1790
0.1813
2.050
26.486
750
14799
5.07
99.16
0.22
1
1.67
MOLECULAR REPLACEMENT
20.19
0.90
1.11
4EHR
ML
FLAT BULK SOLVENT MODEL
2.050
26.486
136
1463
5
0
1322
0.008
1368
0.950
1850
13.139
488
0.042
193
0.004
243
22.82
2.05
37.86
4QVE
16313
0.126
1
9.0
99.9
0.654
2.05
2.11
3.1
2299
1
100.0
data collection
ADSC
Quantum
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.8.4_1496)
data reduction
MOSFLM
data scaling
SCALA
Crystal structure of Bcl-xL in complex with BID BH3 domain
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
SER
4
A
SER
4
HELX_P
A
LYS
20
A
LYS
20
1
1
17
A
VAL
86
A
VAL
46
HELX_P
A
ARG
103
A
ARG
63
1
2
18
A
LEU
108
A
LEU
68
HELX_P
A
HIS
113
A
HIS
73
5
3
6
A
THR
118
A
THR
78
HELX_P
A
PHE
131
A
PHE
91
1
4
14
A
ASN
136
A
ASN
96
HELX_P
A
LYS
157
A
LYS
117
1
5
22
A
VAL
161
A
VAL
121
HELX_P
A
LEU
178
A
LEU
138
1
6
18
A
LEU
178
A
LEU
138
HELX_P
A
ASN
185
A
ASN
145
1
7
8
A
GLY
186
A
GLY
146
HELX_P
A
GLY
196
A
GLY
156
1
8
11
B
SER
78
B
SER
3
HELX_P
B
MET
97
B
MET
22
1
9
20
APOPTOSIS
Protein-peptide complex, Bcl-2 like, Heterodimer, Apoptosis, Anti-apoptotic, BH3 binding, BID BH3
B2CL1_HUMAN
UNP
1
1
Q07817
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLDAREV
IPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQ
VLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER
BID_HUMAN
UNP
2
76
P55957
SESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGL
1
209
4QVE
1
209
Q07817
A
1
1
169
76
109
4QVE
76
109
P55957
B
2
1
34
1
MET
deletion
4QVE
A
Q07817
UNP
45
1
GLU
deletion
4QVE
A
Q07817
UNP
46
1
THR
deletion
4QVE
A
Q07817
UNP
47
1
PRO
deletion
4QVE
A
Q07817
UNP
48
1
SER
deletion
4QVE
A
Q07817
UNP
49
1
ALA
deletion
4QVE
A
Q07817
UNP
50
1
ILE
deletion
4QVE
A
Q07817
UNP
51
1
ASN
deletion
4QVE
A
Q07817
UNP
52
1
GLY
deletion
4QVE
A
Q07817
UNP
53
1
ASN
deletion
4QVE
A
Q07817
UNP
54
1
PRO
deletion
4QVE
A
Q07817
UNP
55
1
SER
deletion
4QVE
A
Q07817
UNP
56
1
TRP
deletion
4QVE
A
Q07817
UNP
57
1
HIS
deletion
4QVE
A
Q07817
UNP
58
1
LEU
deletion
4QVE
A
Q07817
UNP
59
1
ALA
deletion
4QVE
A
Q07817
UNP
60
1
ASP
deletion
4QVE
A
Q07817
UNP
61
1
SER
deletion
4QVE
A
Q07817
UNP
62
1
PRO
deletion
4QVE
A
Q07817
UNP
63
1
ALA
deletion
4QVE
A
Q07817
UNP
64
1
VAL
deletion
4QVE
A
Q07817
UNP
65
1
ASN
deletion
4QVE
A
Q07817
UNP
66
1
GLY
deletion
4QVE
A
Q07817
UNP
67
1
ALA
deletion
4QVE
A
Q07817
UNP
68
1
THR
deletion
4QVE
A
Q07817
UNP
69
1
GLY
deletion
4QVE
A
Q07817
UNP
70
1
HIS
deletion
4QVE
A
Q07817
UNP
71
1
SER
deletion
4QVE
A
Q07817
UNP
72
1
SER
deletion
4QVE
A
Q07817
UNP
73
1
SER
deletion
4QVE
A
Q07817
UNP
74
1
LEU
deletion
4QVE
A
Q07817
UNP
75
1
ASP
deletion
4QVE
A
Q07817
UNP
76
1
ALA
deletion
4QVE
A
Q07817
UNP
77
1
ARG
deletion
4QVE
A
Q07817
UNP
78
1
GLU
deletion
4QVE
A
Q07817
UNP
79
1
VAL
deletion
4QVE
A
Q07817
UNP
80
1
ILE
deletion
4QVE
A
Q07817
UNP
81
1
PRO
deletion
4QVE
A
Q07817
UNP
82
1
MET
deletion
4QVE
A
Q07817
UNP
83
1
ALA
deletion
4QVE
A
Q07817
UNP
84
BINDING SITE FOR RESIDUE IMD B 401
B
IMD
401
Software
5
A
ALA
104
A
ALA
64
5
1_555
A
PHE
105
A
PHE
65
5
1_555
A
ARG
165
A
ARG
125
5
8_545
B
GLN
92
B
GLN
17
5
1_555
B
HOH
513
E
HOH
5
1_555
178
P 61 2 2