data_4QXX # _entry.id 4QXX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4QXX pdb_00004qxx 10.2210/pdb4qxx/pdb RCSB RCSB086652 ? ? WWPDB D_1000086652 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-03-18 2 'Structure model' 1 1 2015-04-08 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4QXX _pdbx_database_status.recvd_initial_deposition_date 2014-07-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Soriaga, A.B.' 1 'Soragni, A.' 2 'Sawaya, M.R.' 3 'Eisenberg, D.' 4 # _citation.id primary _citation.title 'Toxicity of Eosinophil MBP Is Repressed by Intracellular Crystallization and Promoted by Extracellular Aggregation.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 57 _citation.page_first 1011 _citation.page_last 1021 _citation.year 2015 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25728769 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2015.01.026 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Soragni, A.' 1 ? primary 'Yousefi, S.' 2 ? primary 'Stoeckle, C.' 3 ? primary 'Soriaga, A.B.' 4 ? primary 'Sawaya, M.R.' 5 ? primary 'Kozlowski, E.' 6 ? primary 'Schmid, I.' 7 ? primary 'Radonjic-Hoesli, S.' 8 ? primary 'Boutet, S.' 9 ? primary 'Williams, G.J.' 10 ? primary 'Messerschmidt, M.' 11 ? primary 'Seibert, M.M.' 12 ? primary 'Cascio, D.' 13 ? primary 'Zatsepin, N.A.' 14 ? primary 'Burghammer, M.' 15 ? primary 'Riekel, C.' 16 ? primary 'Colletier, J.P.' 17 ? primary 'Riek, R.' 18 ? primary 'Eisenberg, D.S.' 19 ? primary 'Simon, H.U.' 20 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Bone marrow proteoglycan' 488.536 1 ? ? 'GNLVS peptide (UNP residues 131-135)' ? 2 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BMPG, Proteoglycan 2, Eosinophil granule major basic protein, EMBP, MBP, Pregnancy-associated major basic protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GNLVS _entity_poly.pdbx_seq_one_letter_code_can GNLVS _entity_poly.pdbx_strand_id Z _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASN n 1 3 LEU n 1 4 VAL n 1 5 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY Z . n A 1 2 ASN 2 2 2 ASN ASN Z . n A 1 3 LEU 3 3 3 LEU LEU Z . n A 1 4 VAL 4 4 4 VAL VAL Z . n A 1 5 SER 5 5 5 SER SER Z . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 1 HOH HOH Z . B 2 HOH 2 102 3 HOH HOH Z . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 4QXX _cell.length_a 4.755 _cell.length_b 16.816 _cell.length_c 35.759 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QXX _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4QXX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.46 _exptl_crystal.density_percent_sol 15.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pdbx_details '2 M ammonium sulfate, 0.1 M phosphate/citrate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-06-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'cryogenically-cooled single crystal Si(220) side bounce' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.entry_id 4QXX _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100 _reflns.d_resolution_high 1.445 _reflns.number_obs 658 _reflns.number_all ? _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.46 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.36 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.445 _reflns_shell.d_res_low 1.5 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.46 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.94 _reflns_shell.pdbx_redundancy 5.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 66 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4QXX _refine.ls_number_reflns_obs 638 _refine.ls_number_reflns_all 638 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.41 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 17.879 _refine.ls_d_res_high 1.445 _refine.ls_percent_reflns_obs 98.00 _refine.ls_R_factor_obs 0.1674 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1641 _refine.ls_R_factor_R_free 0.1918 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.03 _refine.ls_number_reflns_R_free 64 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -0.0695 _refine.aniso_B[2][2] -0.2246 _refine.aniso_B[3][3] 0.2940 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.375 _refine.solvent_model_param_bsol 49.587 _refine.pdbx_solvent_vdw_probe_radii 0.90 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.60 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.08 _refine.pdbx_overall_phase_error 21.28 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 34 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 36 _refine_hist.d_res_high 1.445 _refine_hist.d_res_low 17.879 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.005 ? ? 33 ? 'X-RAY DIFFRACTION' f_angle_d 1.269 ? ? 44 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 9.426 ? ? 11 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.069 ? ? 6 ? 'X-RAY DIFFRACTION' f_plane_restr 0.002 ? ? 6 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.445 _refine_ls_shell.d_res_low 17.8809 _refine_ls_shell.number_reflns_R_work 574 _refine_ls_shell.R_factor_R_work 0.1641 _refine_ls_shell.percent_reflns_obs 98.00 _refine_ls_shell.R_factor_R_free 0.1918 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 64 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 638 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4QXX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4QXX _struct.title 'Structure of the amyloid forming peptide GNLVS (residues 26-30) from the eosinophil major basic protein (EMBP)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4QXX _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' _struct_keywords.text 'amyloid-like protofibril, PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRG2_HUMAN _struct_ref.pdbx_db_accession P13727 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GNLVS _struct_ref.pdbx_align_begin 131 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4QXX _struct_ref_seq.pdbx_strand_id Z _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 5 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P13727 _struct_ref_seq.db_align_beg 131 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 135 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 4.7550000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_755 x+2,y,z 1.0000000000 0.0000000000 0.0000000000 9.5100000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 3_555 -x,y+1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 8.4080000000 0.0000000000 0.0000000000 -1.0000000000 17.8795000000 5 'crystal symmetry operation' 3_655 -x+1,y+1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 4.7550000000 0.0000000000 1.0000000000 0.0000000000 8.4080000000 0.0000000000 0.0000000000 -1.0000000000 17.8795000000 6 'crystal symmetry operation' 3_755 -x+2,y+1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 9.5100000000 0.0000000000 1.0000000000 0.0000000000 8.4080000000 0.0000000000 0.0000000000 -1.0000000000 17.8795000000 # _struct_biol.id 1 _struct_biol.details 'The biological assembly listed in REMARK 350 represents only a segment of a fibril.' # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id Z _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 102 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLY N N N N 18 GLY CA C N N 19 GLY C C N N 20 GLY O O N N 21 GLY OXT O N N 22 GLY H H N N 23 GLY H2 H N N 24 GLY HA2 H N N 25 GLY HA3 H N N 26 GLY HXT H N N 27 HOH O O N N 28 HOH H1 H N N 29 HOH H2 H N N 30 LEU N N N N 31 LEU CA C N S 32 LEU C C N N 33 LEU O O N N 34 LEU CB C N N 35 LEU CG C N N 36 LEU CD1 C N N 37 LEU CD2 C N N 38 LEU OXT O N N 39 LEU H H N N 40 LEU H2 H N N 41 LEU HA H N N 42 LEU HB2 H N N 43 LEU HB3 H N N 44 LEU HG H N N 45 LEU HD11 H N N 46 LEU HD12 H N N 47 LEU HD13 H N N 48 LEU HD21 H N N 49 LEU HD22 H N N 50 LEU HD23 H N N 51 LEU HXT H N N 52 SER N N N N 53 SER CA C N S 54 SER C C N N 55 SER O O N N 56 SER CB C N N 57 SER OG O N N 58 SER OXT O N N 59 SER H H N N 60 SER H2 H N N 61 SER HA H N N 62 SER HB2 H N N 63 SER HB3 H N N 64 SER HG H N N 65 SER HXT H N N 66 VAL N N N N 67 VAL CA C N S 68 VAL C C N N 69 VAL O O N N 70 VAL CB C N N 71 VAL CG1 C N N 72 VAL CG2 C N N 73 VAL OXT O N N 74 VAL H H N N 75 VAL H2 H N N 76 VAL HA H N N 77 VAL HB H N N 78 VAL HG11 H N N 79 VAL HG12 H N N 80 VAL HG13 H N N 81 VAL HG21 H N N 82 VAL HG22 H N N 83 VAL HG23 H N N 84 VAL HXT H N N 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLY N CA sing N N 17 GLY N H sing N N 18 GLY N H2 sing N N 19 GLY CA C sing N N 20 GLY CA HA2 sing N N 21 GLY CA HA3 sing N N 22 GLY C O doub N N 23 GLY C OXT sing N N 24 GLY OXT HXT sing N N 25 HOH O H1 sing N N 26 HOH O H2 sing N N 27 LEU N CA sing N N 28 LEU N H sing N N 29 LEU N H2 sing N N 30 LEU CA C sing N N 31 LEU CA CB sing N N 32 LEU CA HA sing N N 33 LEU C O doub N N 34 LEU C OXT sing N N 35 LEU CB CG sing N N 36 LEU CB HB2 sing N N 37 LEU CB HB3 sing N N 38 LEU CG CD1 sing N N 39 LEU CG CD2 sing N N 40 LEU CG HG sing N N 41 LEU CD1 HD11 sing N N 42 LEU CD1 HD12 sing N N 43 LEU CD1 HD13 sing N N 44 LEU CD2 HD21 sing N N 45 LEU CD2 HD22 sing N N 46 LEU CD2 HD23 sing N N 47 LEU OXT HXT sing N N 48 SER N CA sing N N 49 SER N H sing N N 50 SER N H2 sing N N 51 SER CA C sing N N 52 SER CA CB sing N N 53 SER CA HA sing N N 54 SER C O doub N N 55 SER C OXT sing N N 56 SER CB OG sing N N 57 SER CB HB2 sing N N 58 SER CB HB3 sing N N 59 SER OG HG sing N N 60 SER OXT HXT sing N N 61 VAL N CA sing N N 62 VAL N H sing N N 63 VAL N H2 sing N N 64 VAL CA C sing N N 65 VAL CA CB sing N N 66 VAL CA HA sing N N 67 VAL C O doub N N 68 VAL C OXT sing N N 69 VAL CB CG1 sing N N 70 VAL CB CG2 sing N N 71 VAL CB HB sing N N 72 VAL CG1 HG11 sing N N 73 VAL CG1 HG12 sing N N 74 VAL CG1 HG13 sing N N 75 VAL CG2 HG21 sing N N 76 VAL CG2 HG22 sing N N 77 VAL CG2 HG23 sing N N 78 VAL OXT HXT sing N N 79 # _atom_sites.entry_id 4QXX _atom_sites.fract_transf_matrix[1][1] 0.210305 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.059467 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027965 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . GLY A 1 1 ? -0.821 -2.072 16.609 1.00 9.93 ? 1 GLY Z N 1 ATOM 2 C CA . GLY A 1 1 ? -1.705 -2.345 15.487 1.00 7.38 ? 1 GLY Z CA 1 ATOM 3 C C . GLY A 1 1 ? -0.968 -3.008 14.344 1.00 4.89 ? 1 GLY Z C 1 ATOM 4 O O . GLY A 1 1 ? 0.258 -2.982 14.292 1.00 5.05 ? 1 GLY Z O 1 ATOM 5 N N . ASN A 1 2 ? -1.721 -3.603 13.425 1.00 3.53 ? 2 ASN Z N 1 ATOM 6 C CA . ASN A 1 2 ? -1.141 -4.323 12.291 1.00 1.85 ? 2 ASN Z CA 1 ATOM 7 C C . ASN A 1 2 ? -1.748 -3.900 10.968 1.00 3.00 ? 2 ASN Z C 1 ATOM 8 O O . ASN A 1 2 ? -2.955 -3.683 10.873 1.00 3.99 ? 2 ASN Z O 1 ATOM 9 C CB . ASN A 1 2 ? -1.353 -5.827 12.446 1.00 5.03 ? 2 ASN Z CB 1 ATOM 10 C CG . ASN A 1 2 ? -0.679 -6.391 13.683 1.00 5.08 ? 2 ASN Z CG 1 ATOM 11 O OD1 . ASN A 1 2 ? 0.519 -6.202 13.896 1.00 6.10 ? 2 ASN Z OD1 1 ATOM 12 N ND2 . ASN A 1 2 ? -1.448 -7.087 14.506 1.00 8.41 ? 2 ASN Z ND2 1 ATOM 13 N N . LEU A 1 3 ? -0.907 -3.803 9.944 1.00 3.47 ? 3 LEU Z N 1 ATOM 14 C CA . LEU A 1 3 ? -1.388 -3.576 8.586 1.00 3.48 ? 3 LEU Z CA 1 ATOM 15 C C . LEU A 1 3 ? -0.783 -4.660 7.709 1.00 3.29 ? 3 LEU Z C 1 ATOM 16 O O . LEU A 1 3 ? 0.437 -4.788 7.643 1.00 3.80 ? 3 LEU Z O 1 ATOM 17 C CB . LEU A 1 3 ? -0.977 -2.185 8.081 1.00 3.88 ? 3 LEU Z CB 1 ATOM 18 C CG . LEU A 1 3 ? -1.524 -1.669 6.736 1.00 8.66 ? 3 LEU Z CG 1 ATOM 19 C CD1 . LEU A 1 3 ? -1.225 -0.191 6.570 1.00 9.89 ? 3 LEU Z CD1 1 ATOM 20 C CD2 . LEU A 1 3 ? -0.962 -2.409 5.541 1.00 13.56 ? 3 LEU Z CD2 1 ATOM 21 N N . VAL A 1 4 ? -1.635 -5.424 7.029 1.00 3.17 ? 4 VAL Z N 1 ATOM 22 C CA . VAL A 1 4 ? -1.165 -6.460 6.119 1.00 3.61 ? 4 VAL Z CA 1 ATOM 23 C C . VAL A 1 4 ? -1.791 -6.230 4.755 1.00 5.31 ? 4 VAL Z C 1 ATOM 24 O O . VAL A 1 4 ? -3.014 -6.209 4.620 1.00 7.31 ? 4 VAL Z O 1 ATOM 25 C CB . VAL A 1 4 ? -1.567 -7.872 6.593 1.00 5.31 ? 4 VAL Z CB 1 ATOM 26 C CG1 . VAL A 1 4 ? -1.012 -8.934 5.633 1.00 6.73 ? 4 VAL Z CG1 1 ATOM 27 C CG2 . VAL A 1 4 ? -1.083 -8.120 8.018 1.00 5.48 ? 4 VAL Z CG2 1 ATOM 28 N N . SER A 1 5 ? -0.966 -6.052 3.736 1.00 7.53 ? 5 SER Z N 1 ATOM 29 C CA . SER A 1 5 ? -1.526 -5.888 2.407 1.00 11.48 ? 5 SER Z CA 1 ATOM 30 C C . SER A 1 5 ? -1.207 -7.085 1.529 1.00 16.35 ? 5 SER Z C 1 ATOM 31 O O . SER A 1 5 ? -0.437 -7.976 1.902 1.00 14.00 ? 5 SER Z O 1 ATOM 32 C CB . SER A 1 5 ? -1.031 -4.596 1.767 1.00 13.36 ? 5 SER Z CB 1 ATOM 33 O OG . SER A 1 5 ? 0.361 -4.652 1.540 1.00 15.80 ? 5 SER Z OG 1 ATOM 34 O OXT . SER A 1 5 ? -1.737 -7.178 0.429 1.00 17.09 ? 5 SER Z OXT 1 HETATM 35 O O . HOH B 2 . ? 0.935 -5.175 16.502 1.00 18.83 ? 101 HOH Z O 1 HETATM 36 O O A HOH B 2 . ? 0.691 -8.408 17.879 0.91 56.55 ? 102 HOH Z O 1 HETATM 37 O O B HOH B 2 . ? -0.788 -9.006 16.641 0.09 38.95 ? 102 HOH Z O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 N N . GLY A 1 ? 0.1184 0.1952 0.0638 0.0314 -0.0191 -0.0326 1 GLY Z N 2 C CA . GLY A 1 ? 0.0957 0.1374 0.0472 0.0279 -0.0124 -0.0261 1 GLY Z CA 3 C C . GLY A 1 ? 0.0899 0.0614 0.0343 0.0211 0.0112 -0.0106 1 GLY Z C 4 O O . GLY A 1 ? 0.0839 0.0595 0.0485 -0.0011 -0.0007 -0.0180 1 GLY Z O 5 N N . ASN A 2 ? 0.0747 0.0329 0.0264 -0.0226 0.0117 -0.0067 2 ASN Z N 6 C CA . ASN A 2 ? 0.0313 0.0164 0.0225 0.0076 -0.0023 0.0077 2 ASN Z CA 7 C C . ASN A 2 ? 0.0610 0.0293 0.0238 0.0197 -0.0002 -0.0042 2 ASN Z C 8 O O . ASN A 2 ? 0.0599 0.0514 0.0402 0.0199 0.0191 -0.0060 2 ASN Z O 9 C CB . ASN A 2 ? 0.1173 0.0368 0.0369 0.0170 -0.0047 0.0037 2 ASN Z CB 10 C CG . ASN A 2 ? 0.0727 0.0718 0.0484 0.0228 -0.0243 0.0090 2 ASN Z CG 11 O OD1 . ASN A 2 ? 0.0828 0.0960 0.0531 0.0477 -0.0061 0.0100 2 ASN Z OD1 12 N ND2 . ASN A 2 ? 0.1513 0.1193 0.0488 0.0040 0.0102 0.0279 2 ASN Z ND2 13 N N . LEU A 3 ? 0.0701 0.0405 0.0213 -0.0242 0.0025 -0.0026 3 LEU Z N 14 C CA . LEU A 3 ? 0.0728 0.0324 0.0271 0.0079 0.0180 -0.0005 3 LEU Z CA 15 C C . LEU A 3 ? 0.0684 0.0261 0.0306 -0.0017 0.0150 -0.0080 3 LEU Z C 16 O O . LEU A 3 ? 0.0590 0.0437 0.0415 0.0141 0.0178 -0.0122 3 LEU Z O 17 C CB . LEU A 3 ? 0.0899 0.0293 0.0282 0.0171 0.0125 0.0042 3 LEU Z CB 18 C CG . LEU A 3 ? 0.2091 0.0598 0.0600 0.0063 -0.0094 0.0066 3 LEU Z CG 19 C CD1 . LEU A 3 ? 0.2263 0.0792 0.0703 0.0132 -0.0163 0.0143 3 LEU Z CD1 20 C CD2 . LEU A 3 ? 0.3203 0.1048 0.0901 -0.0640 -0.0305 0.0094 3 LEU Z CD2 21 N N . VAL A 4 ? 0.0604 0.0266 0.0333 -0.0100 0.0104 -0.0123 4 VAL Z N 22 C CA . VAL A 4 ? 0.0607 0.0353 0.0411 0.0205 -0.0241 -0.0157 4 VAL Z CA 23 C C . VAL A 4 ? 0.0543 0.0915 0.0562 0.0395 -0.0015 -0.0039 4 VAL Z C 24 O O . VAL A 4 ? 0.0577 0.1569 0.0630 0.0045 -0.0005 -0.0227 4 VAL Z O 25 C CB . VAL A 4 ? 0.1024 0.0336 0.0657 0.0064 0.0039 -0.0167 4 VAL Z CB 26 C CG1 . VAL A 4 ? 0.1131 0.0549 0.0879 0.0220 0.0104 -0.0300 4 VAL Z CG1 27 C CG2 . VAL A 4 ? 0.0819 0.0632 0.0630 0.0015 0.0015 0.0042 4 VAL Z CG2 28 N N . SER A 5 ? 0.0810 0.1357 0.0693 0.0337 0.0048 0.0302 5 SER Z N 29 C CA . SER A 5 ? 0.1654 0.1766 0.0943 0.0560 -0.0145 0.0241 5 SER Z CA 30 C C . SER A 5 ? 0.3066 0.2118 0.1029 0.0758 -0.0523 -0.0208 5 SER Z C 31 O O . SER A 5 ? 0.2584 0.1676 0.1060 0.0878 -0.0402 -0.0452 5 SER Z O 32 C CB . SER A 5 ? 0.1565 0.2151 0.1361 0.0818 -0.0030 0.0608 5 SER Z CB 33 O OG . SER A 5 ? 0.1604 0.2812 0.1587 0.0822 0.0025 0.0763 5 SER Z OG 34 O OXT . SER A 5 ? 0.2807 0.2495 0.1192 0.0648 -0.0712 -0.0430 5 SER Z OXT 35 O O . HOH B . ? 0.3066 0.2772 0.1315 -0.1227 -0.0232 0.0339 101 HOH Z O 36 O O A HOH B . ? 0.9673 0.9234 0.2579 0.0000 0.0005 0.1219 102 HOH Z O 37 O O B HOH B . ? 0.6801 0.4266 0.3734 0.2095 -0.1531 0.0549 102 HOH Z O #