data_4R0W # _entry.id 4R0W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4R0W pdb_00004r0w 10.2210/pdb4r0w/pdb RCSB RCSB086759 ? ? WWPDB D_1000086759 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-17 2 'Structure model' 1 1 2015-01-14 3 'Structure model' 1 2 2024-02-28 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 4R0W _pdbx_database_status.status_code REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-08-01 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4r0u _pdbx_database_related.details 'TGVTAVA, another amyloid forming segment from alpha-synuclein' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ivanova, M.I.' 1 'Eisenberg, D.S.' 2 'Sawaya, M.R.' 3 # _citation.id primary _citation.title 'Structure-based design of functional amyloid materials.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 136 _citation.page_first 18044 _citation.page_last 18051 _citation.year 2014 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25474758 _citation.pdbx_database_id_DOI 10.1021/ja509648u # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, D.' 1 ? primary 'Jones, E.M.' 2 ? primary 'Sawaya, M.R.' 3 ? primary 'Furukawa, H.' 4 ? primary 'Luo, F.' 5 ? primary 'Ivanova, M.' 6 ? primary 'Sievers, S.A.' 7 ? primary 'Wang, W.' 8 ? primary 'Yaghi, O.M.' 9 ? primary 'Liu, C.' 10 ? primary 'Eisenberg, D.S.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Alpha-synuclein 645.745 1 ? ? 'UNP RESIDUES 70-76' ? 2 water nat water 18.015 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Non-A beta component of AD amyloid, Non-A4 component of amyloid precursor, NACP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VVTGVTA _entity_poly.pdbx_seq_one_letter_code_can VVTGVTA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 VAL n 1 3 THR n 1 4 GLY n 1 5 VAL n 1 6 THR n 1 7 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'VVTGVTA (residues 70-76) from Human alpha-synuclein, synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 ALA 7 7 7 ALA ALA A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HOH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HOH _pdbx_nonpoly_scheme.auth_mon_id HOH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 1.3.2 'Wed Feb 15 11:59:26 2006' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _cell.length_a 50.367 _cell.length_b 4.823 _cell.length_c 15.692 _cell.angle_alpha 90.000 _cell.angle_beta 107.890 _cell.angle_gamma 90.000 _cell.entry_id 4R0W _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 4R0W _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4R0W _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.600 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.40 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 12.42 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details 'isopropanol, sodium cacodylate, pH 6.5, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2007-07-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.895432 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID13' _diffrn_source.pdbx_wavelength_list 0.895432 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID13 # _reflns.entry_id 4R0W _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 90.000 _reflns.number_obs 650 _reflns.pdbx_Rmerge_I_obs 0.193 _reflns.pdbx_netI_over_sigmaI 5.000 _reflns.pdbx_chi_squared 1.113 _reflns.pdbx_redundancy 3.100 _reflns.percent_possible_obs 93.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.number_all 650 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 17.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.500 1.620 ? ? ? 0 0.177 ? ? 1.003 2.300 ? ? ? 121 ? ? ? ? 88.300 ? ? 1 1 1.620 1.780 ? ? ? 0 0.491 ? ? 1.081 2.100 ? ? ? 106 ? ? ? ? 85.500 ? ? 2 1 1.780 2.040 ? ? ? 0 0.377 ? ? 1.136 3.400 ? ? ? 128 ? ? ? ? 97.700 ? ? 3 1 2.040 2.560 ? ? ? 0 0.256 ? ? 1.109 3.900 ? ? ? 144 ? ? ? ? 98.600 ? ? 4 1 2.560 90.000 ? ? ? 0 0.164 ? ? 1.153 3.500 ? ? ? 151 ? ? ? ? 98.100 ? ? 5 1 # _refine.entry_id 4R0W _refine.ls_d_res_high 1.5000 _refine.ls_d_res_low 23.9700 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 93.5100 _refine.ls_number_reflns_obs 648 _refine.ls_number_reflns_all 648 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.2467 _refine.ls_R_factor_obs 0.2467 _refine.ls_R_factor_R_work 0.2440 _refine.ls_wR_factor_R_work 0.2740 _refine.ls_R_factor_R_free 0.2739 _refine.ls_wR_factor_R_free 0.3048 _refine.ls_percent_reflns_R_free 9.6000 _refine.ls_number_reflns_R_free 62 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 11.9100 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.3700 _refine.aniso_B[2][2] -3.0000 _refine.aniso_B[3][3] 2.9500 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.5300 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9590 _refine.correlation_coeff_Fo_to_Fc_free 0.9440 _refine.overall_SU_R_Cruickshank_DPI 0.1311 _refine.overall_SU_R_free 0.1219 _refine.pdbx_overall_ESU_R 0.1310 _refine.pdbx_overall_ESU_R_Free 0.1220 _refine.overall_SU_ML 0.0960 _refine.overall_SU_B 3.2340 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'ideal beta strand' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7168 _refine.B_iso_max 39.730 _refine.B_iso_min 12.850 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 45 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 46 _refine_hist.d_res_high 1.5000 _refine_hist.d_res_low 23.9700 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 44 0.016 0.023 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 19 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 61 1.432 1.984 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 50 0.873 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6 3.330 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 5 6.614 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 11 0.087 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 46 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 6 0.000 0.020 ? ? 'X-RAY DIFFRACTION' r_nbd_refined 2 0.064 0.200 ? ? 'X-RAY DIFFRACTION' r_nbd_other 15 0.248 0.200 ? ? 'X-RAY DIFFRACTION' r_nbtor_refined 24 0.170 0.200 ? ? 'X-RAY DIFFRACTION' r_nbtor_other 26 0.097 0.200 ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined 3 0.070 0.200 ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other 7 0.213 0.200 ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined 1 0.155 0.200 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 41 2.408 2.000 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 14 0.371 2.000 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 56 2.981 3.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 10 1.568 2.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 5 1.124 3.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.5020 _refine_ls_shell.d_res_low 1.6780 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 85.9400 _refine_ls_shell.number_reflns_R_work 143 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3700 _refine_ls_shell.R_factor_R_free 0.4050 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 165 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4R0W _struct.title 'Vvtgvta, an amyloid forming segment from alpha synuclein, residues 70-76' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4R0W _struct_keywords.text 'amyloid-like protofibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYUA_HUMAN _struct_ref.pdbx_db_accession P37840 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VVTGVTA _struct_ref.pdbx_align_begin 70 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4R0W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 7 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P37840 _struct_ref_seq.db_align_beg 70 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 76 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -9.6460000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -4.8230000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.8230000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.6460000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 4_556 -x+1/2,y+1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 20.3630662258 0.0000000000 1.0000000000 0.0000000000 2.4115000000 0.0000000000 0.0000000000 -1.0000000000 14.9332609375 7 'crystal symmetry operation' 4_536 -x+1/2,y-3/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 20.3630662258 0.0000000000 1.0000000000 0.0000000000 -7.2345000000 0.0000000000 0.0000000000 -1.0000000000 14.9332609375 8 'crystal symmetry operation' 4_546 -x+1/2,y-1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 20.3630662258 0.0000000000 1.0000000000 0.0000000000 -2.4115000000 0.0000000000 0.0000000000 -1.0000000000 14.9332609375 9 'crystal symmetry operation' 4_566 -x+1/2,y+3/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 20.3630662258 0.0000000000 1.0000000000 0.0000000000 7.2345000000 0.0000000000 0.0000000000 -1.0000000000 14.9332609375 10 'crystal symmetry operation' 4_576 -x+1/2,y+5/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 20.3630662258 0.0000000000 1.0000000000 0.0000000000 12.0575000000 0.0000000000 0.0000000000 -1.0000000000 14.9332609375 # _struct_biol.id 1 _struct_biol.details ;The biological unit is a fibril, comprising a pair of beta sheets constructed from chain A and unit cell translations along the b direction (that is, the b direction corresponds to the fiber axis) (i.e. X,Y,Z; X,Y+1,Z; X,Y+2,Z; etc.) together with a symmetry related sheet formed from 1/2-X,1/2+Y,-Z+1 and its unit cell translations along the b direction (i.e. 1/2-X,3/2+Y,-Z+1; 1/2-X,5/2+Y,-Z+1; etc.). REMARK 350 displays 5 strands from each sheet. ; # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 101 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_phasing_MR.entry_id 4R0W _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.600 _pdbx_phasing_MR.d_res_low_rotation 23.970 _pdbx_phasing_MR.d_res_high_translation 1.600 _pdbx_phasing_MR.d_res_low_translation 23.970 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 GLY N N N N 14 GLY CA C N N 15 GLY C C N N 16 GLY O O N N 17 GLY OXT O N N 18 GLY H H N N 19 GLY H2 H N N 20 GLY HA2 H N N 21 GLY HA3 H N N 22 GLY HXT H N N 23 HOH O O N N 24 HOH H1 H N N 25 HOH H2 H N N 26 THR N N N N 27 THR CA C N S 28 THR C C N N 29 THR O O N N 30 THR CB C N R 31 THR OG1 O N N 32 THR CG2 C N N 33 THR OXT O N N 34 THR H H N N 35 THR H2 H N N 36 THR HA H N N 37 THR HB H N N 38 THR HG1 H N N 39 THR HG21 H N N 40 THR HG22 H N N 41 THR HG23 H N N 42 THR HXT H N N 43 VAL N N N N 44 VAL CA C N S 45 VAL C C N N 46 VAL O O N N 47 VAL CB C N N 48 VAL CG1 C N N 49 VAL CG2 C N N 50 VAL OXT O N N 51 VAL H H N N 52 VAL H2 H N N 53 VAL HA H N N 54 VAL HB H N N 55 VAL HG11 H N N 56 VAL HG12 H N N 57 VAL HG13 H N N 58 VAL HG21 H N N 59 VAL HG22 H N N 60 VAL HG23 H N N 61 VAL HXT H N N 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 GLY N CA sing N N 13 GLY N H sing N N 14 GLY N H2 sing N N 15 GLY CA C sing N N 16 GLY CA HA2 sing N N 17 GLY CA HA3 sing N N 18 GLY C O doub N N 19 GLY C OXT sing N N 20 GLY OXT HXT sing N N 21 HOH O H1 sing N N 22 HOH O H2 sing N N 23 THR N CA sing N N 24 THR N H sing N N 25 THR N H2 sing N N 26 THR CA C sing N N 27 THR CA CB sing N N 28 THR CA HA sing N N 29 THR C O doub N N 30 THR C OXT sing N N 31 THR CB OG1 sing N N 32 THR CB CG2 sing N N 33 THR CB HB sing N N 34 THR OG1 HG1 sing N N 35 THR CG2 HG21 sing N N 36 THR CG2 HG22 sing N N 37 THR CG2 HG23 sing N N 38 THR OXT HXT sing N N 39 VAL N CA sing N N 40 VAL N H sing N N 41 VAL N H2 sing N N 42 VAL CA C sing N N 43 VAL CA CB sing N N 44 VAL CA HA sing N N 45 VAL C O doub N N 46 VAL C OXT sing N N 47 VAL CB CG1 sing N N 48 VAL CB CG2 sing N N 49 VAL CB HB sing N N 50 VAL CG1 HG11 sing N N 51 VAL CG1 HG12 sing N N 52 VAL CG1 HG13 sing N N 53 VAL CG2 HG21 sing N N 54 VAL CG2 HG22 sing N N 55 VAL CG2 HG23 sing N N 56 VAL OXT HXT sing N N 57 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'ideal beta strand' # _atom_sites.entry_id 4R0W _atom_sites.fract_transf_matrix[1][1] 0.019854 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006407 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.207340 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.066963 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . VAL A 1 1 ? 18.712 1.836 4.926 1.00 20.79 ? 1 VAL A N 1 ATOM 2 C CA . VAL A 1 1 ? 17.522 2.246 4.127 1.00 17.09 ? 1 VAL A CA 1 ATOM 3 C C . VAL A 1 1 ? 16.256 1.615 4.673 1.00 12.99 ? 1 VAL A C 1 ATOM 4 O O . VAL A 1 1 ? 16.174 0.421 4.812 1.00 12.85 ? 1 VAL A O 1 ATOM 5 C CB . VAL A 1 1 ? 17.693 1.813 2.671 1.00 18.00 ? 1 VAL A CB 1 ATOM 6 C CG1 . VAL A 1 1 ? 16.530 2.283 1.853 1.00 19.36 ? 1 VAL A CG1 1 ATOM 7 C CG2 . VAL A 1 1 ? 18.976 2.357 2.137 1.00 18.53 ? 1 VAL A CG2 1 ATOM 8 N N . VAL A 1 2 ? 15.255 2.421 4.942 1.00 14.71 ? 2 VAL A N 1 ATOM 9 C CA . VAL A 1 2 ? 13.984 1.932 5.394 1.00 14.99 ? 2 VAL A CA 1 ATOM 10 C C . VAL A 1 2 ? 12.913 2.519 4.506 1.00 14.78 ? 2 VAL A C 1 ATOM 11 O O . VAL A 1 2 ? 12.868 3.739 4.293 1.00 14.02 ? 2 VAL A O 1 ATOM 12 C CB . VAL A 1 2 ? 13.783 2.356 6.866 1.00 15.83 ? 2 VAL A CB 1 ATOM 13 C CG1 . VAL A 1 2 ? 12.341 2.083 7.349 1.00 16.98 ? 2 VAL A CG1 1 ATOM 14 C CG2 . VAL A 1 2 ? 14.796 1.637 7.709 1.00 15.98 ? 2 VAL A CG2 1 ATOM 15 N N . THR A 1 3 ? 12.100 1.657 3.897 1.00 17.00 ? 3 THR A N 1 ATOM 16 C CA . THR A 1 3 ? 10.971 2.133 3.131 1.00 16.19 ? 3 THR A CA 1 ATOM 17 C C . THR A 1 3 ? 9.701 1.553 3.692 1.00 15.50 ? 3 THR A C 1 ATOM 18 O O . THR A 1 3 ? 9.610 0.353 3.910 1.00 16.23 ? 3 THR A O 1 ATOM 19 C CB . THR A 1 3 ? 11.068 1.726 1.663 1.00 17.89 ? 3 THR A CB 1 ATOM 20 O OG1 . THR A 1 3 ? 12.364 2.075 1.170 1.00 19.42 ? 3 THR A OG1 1 ATOM 21 C CG2 . THR A 1 3 ? 9.952 2.430 0.862 1.00 19.85 ? 3 THR A CG2 1 ATOM 22 N N . GLY A 1 4 ? 8.703 2.391 3.891 1.00 15.41 ? 4 GLY A N 1 ATOM 23 C CA . GLY A 1 4 ? 7.450 1.939 4.484 1.00 15.61 ? 4 GLY A CA 1 ATOM 24 C C . GLY A 1 4 ? 6.234 2.612 3.880 1.00 14.01 ? 4 GLY A C 1 ATOM 25 O O . GLY A 1 4 ? 6.234 3.825 3.643 1.00 13.03 ? 4 GLY A O 1 ATOM 26 N N . VAL A 1 5 ? 5.215 1.808 3.599 1.00 13.62 ? 5 VAL A N 1 ATOM 27 C CA . VAL A 1 5 ? 3.948 2.314 3.069 1.00 16.03 ? 5 VAL A CA 1 ATOM 28 C C . VAL A 1 5 ? 2.853 1.702 3.925 1.00 15.40 ? 5 VAL A C 1 ATOM 29 O O . VAL A 1 5 ? 2.769 0.498 3.983 1.00 15.78 ? 5 VAL A O 1 ATOM 30 C CB . VAL A 1 5 ? 3.729 1.859 1.633 1.00 17.07 ? 5 VAL A CB 1 ATOM 31 C CG1 . VAL A 1 5 ? 2.456 2.446 1.111 1.00 17.49 ? 5 VAL A CG1 1 ATOM 32 C CG2 . VAL A 1 5 ? 4.934 2.220 0.753 1.00 18.54 ? 5 VAL A CG2 1 ATOM 33 N N . THR A 1 6 ? 2.049 2.479 4.626 1.00 17.11 ? 6 THR A N 1 ATOM 34 C CA . THR A 1 6 ? 0.971 1.876 5.399 1.00 17.81 ? 6 THR A CA 1 ATOM 35 C C . THR A 1 6 ? -0.329 2.428 4.926 1.00 18.87 ? 6 THR A C 1 ATOM 36 O O . THR A 1 6 ? -0.439 3.614 4.718 1.00 26.63 ? 6 THR A O 1 ATOM 37 C CB . THR A 1 6 ? 1.133 2.080 6.904 1.00 15.85 ? 6 THR A CB 1 ATOM 38 O OG1 . THR A 1 6 ? 0.979 3.440 7.221 1.00 19.10 ? 6 THR A OG1 1 ATOM 39 C CG2 . THR A 1 6 ? 2.478 1.610 7.374 1.00 17.27 ? 6 THR A CG2 1 ATOM 40 N N . ALA A 1 7 ? -1.308 1.583 4.694 1.00 22.76 ? 7 ALA A N 1 ATOM 41 C CA . ALA A 1 7 ? -2.605 2.071 4.241 1.00 25.44 ? 7 ALA A CA 1 ATOM 42 C C . ALA A 1 7 ? -3.761 1.255 4.823 1.00 27.84 ? 7 ALA A C 1 ATOM 43 O O . ALA A 1 7 ? -3.548 0.370 5.654 1.00 30.54 ? 7 ALA A O 1 ATOM 44 C CB . ALA A 1 7 ? -2.666 2.099 2.725 1.00 26.00 ? 7 ALA A CB 1 ATOM 45 O OXT . ALA A 1 7 ? -4.933 1.496 4.502 1.00 28.94 ? 7 ALA A OXT 1 HETATM 46 O O . HOH B 2 . ? -2.315 -1.544 7.482 0.50 39.73 ? 101 HOH A O 1 #