0.018508 0.000000 0.000000 -0.000000 0.014620 0.000000 0.000000 -0.000000 0.011902 0.000000 0.000000 0.000000 Osipiuk, J. Mack, J. Clancy, S. Joachimiak, A. Midwest Center for Structural Genomics (MCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 54.032 68.398 84.016 C2 H3 O2 -1 59.044 ACETATE ION non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 GntR family transcriptional regulator from Listeria monocytogenes 100 1 CCD 2014-06-02 ADSC QUANTUM 315r double crystal monochromator SINGLE WAVELENGTH M x-ray 1 0.9792 1.0 19-ID APS 0.9792 SYNCHROTRON APS BEAMLINE 19-ID 14821.556 Lmo0741 protein 2 man polymer 59.044 ACETATE ION 2 syn non-polymer 18.015 water 201 nat water no yes SNA(MSE)KFDDSKPIYKQIVHYIHTEIVTGTYEAGDKLLSVRELATKLEVNPTTIQRAYAELEETEIIYTVRGTGKYLT EDKRRIEQLENDIAKQLTENFISE(MSE)SKLGINKEKIIAWVKKVEEVEVNVSGK SNAMKFDDSKPIYKQIVHYIHTEIVTGTYEAGDKLLSVRELATKLEVNPTTIQRAYAELEETEIIYTVRGTGKYLTEDKR RIEQLENDIAKQLTENFISEMSKLGINKEKIIAWVKKVEEVEVNVSGK A,B MCSG-APC106832 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n EGD-e sample lmo0741 169963 Listeria monocytogenes 469008 Escherichia coli BL21(DE3) plasmid pMCSG73 1 2.62 53.03 VAPOR DIFFUSION, SITTING DROP 8.5 0.17 M sodium acetate, 0.085 M Tris-HCl buffer, 25.5% PEG 4000, 15% glycerol, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 297K 297 Midwest Center for Structural Genomics MCSG PSI:Biology software repository Initial release Refinement description 1 0 2014-08-20 1 1 2017-11-22 Y RCSB Y RCSB 2014-08-05 REL REL ACT ACETATE ION HOH water ACT 302 2 ACT ACT 201 A ACT 301 2 ACT ACT 301 B HOH 1 3 HOH HOH 301 A HOH 3 3 HOH HOH 302 A HOH 5 3 HOH HOH 303 A HOH 6 3 HOH HOH 304 A HOH 9 3 HOH HOH 305 A HOH 10 3 HOH HOH 306 A HOH 11 3 HOH HOH 307 A HOH 12 3 HOH HOH 308 A HOH 21 3 HOH HOH 309 A HOH 29 3 HOH HOH 310 A HOH 30 3 HOH HOH 311 A HOH 33 3 HOH HOH 312 A HOH 35 3 HOH HOH 313 A HOH 36 3 HOH HOH 314 A HOH 39 3 HOH HOH 315 A HOH 40 3 HOH HOH 316 A HOH 42 3 HOH HOH 317 A HOH 43 3 HOH HOH 318 A HOH 49 3 HOH HOH 319 A HOH 52 3 HOH HOH 320 A HOH 54 3 HOH HOH 321 A HOH 55 3 HOH HOH 322 A HOH 57 3 HOH HOH 323 A HOH 61 3 HOH HOH 324 A HOH 66 3 HOH HOH 325 A HOH 67 3 HOH HOH 326 A HOH 71 3 HOH HOH 327 A HOH 78 3 HOH HOH 328 A HOH 81 3 HOH HOH 329 A HOH 82 3 HOH HOH 330 A HOH 84 3 HOH HOH 331 A HOH 88 3 HOH HOH 332 A HOH 89 3 HOH HOH 333 A HOH 90 3 HOH HOH 334 A HOH 93 3 HOH HOH 335 A HOH 95 3 HOH HOH 336 A HOH 96 3 HOH HOH 337 A HOH 97 3 HOH HOH 338 A HOH 98 3 HOH HOH 339 A HOH 99 3 HOH HOH 340 A HOH 104 3 HOH HOH 341 A HOH 105 3 HOH HOH 342 A HOH 107 3 HOH HOH 343 A HOH 108 3 HOH HOH 344 A HOH 109 3 HOH HOH 345 A HOH 111 3 HOH HOH 346 A HOH 113 3 HOH HOH 347 A HOH 116 3 HOH HOH 348 A HOH 117 3 HOH HOH 349 A HOH 120 3 HOH HOH 350 A HOH 122 3 HOH HOH 351 A HOH 126 3 HOH HOH 352 A HOH 129 3 HOH HOH 353 A HOH 132 3 HOH HOH 354 A HOH 138 3 HOH HOH 355 A HOH 141 3 HOH HOH 356 A HOH 142 3 HOH HOH 357 A HOH 143 3 HOH HOH 358 A HOH 144 3 HOH HOH 359 A HOH 145 3 HOH HOH 360 A HOH 146 3 HOH HOH 361 A HOH 147 3 HOH HOH 362 A HOH 148 3 HOH HOH 363 A HOH 149 3 HOH HOH 364 A HOH 150 3 HOH HOH 365 A HOH 151 3 HOH HOH 366 A HOH 152 3 HOH HOH 367 A HOH 153 3 HOH HOH 368 A HOH 171 3 HOH HOH 369 A HOH 174 3 HOH HOH 370 A HOH 175 3 HOH HOH 371 A HOH 176 3 HOH HOH 372 A HOH 177 3 HOH HOH 373 A HOH 178 3 HOH HOH 374 A HOH 179 3 HOH HOH 375 A HOH 180 3 HOH HOH 376 A HOH 181 3 HOH HOH 377 A HOH 183 3 HOH HOH 378 A HOH 187 3 HOH HOH 379 A HOH 189 3 HOH HOH 380 A HOH 193 3 HOH HOH 381 A HOH 194 3 HOH HOH 382 A HOH 196 3 HOH HOH 383 A HOH 199 3 HOH HOH 384 A HOH 200 3 HOH HOH 385 A HOH 201 3 HOH HOH 386 A HOH 2 3 HOH HOH 401 B HOH 4 3 HOH HOH 402 B HOH 7 3 HOH HOH 403 B HOH 8 3 HOH HOH 404 B HOH 13 3 HOH HOH 405 B HOH 14 3 HOH HOH 406 B HOH 15 3 HOH HOH 407 B HOH 16 3 HOH HOH 408 B HOH 17 3 HOH HOH 409 B HOH 18 3 HOH HOH 410 B HOH 19 3 HOH HOH 411 B HOH 20 3 HOH HOH 412 B HOH 22 3 HOH HOH 413 B HOH 23 3 HOH HOH 414 B HOH 24 3 HOH HOH 415 B HOH 25 3 HOH HOH 416 B HOH 26 3 HOH HOH 417 B HOH 27 3 HOH HOH 418 B HOH 28 3 HOH HOH 419 B HOH 31 3 HOH HOH 420 B HOH 32 3 HOH HOH 421 B HOH 34 3 HOH HOH 422 B HOH 37 3 HOH HOH 423 B HOH 38 3 HOH HOH 424 B HOH 41 3 HOH HOH 425 B HOH 44 3 HOH HOH 426 B HOH 45 3 HOH HOH 427 B HOH 46 3 HOH HOH 428 B HOH 47 3 HOH HOH 429 B HOH 48 3 HOH HOH 430 B HOH 50 3 HOH HOH 431 B HOH 51 3 HOH HOH 432 B HOH 53 3 HOH HOH 433 B HOH 56 3 HOH HOH 434 B HOH 58 3 HOH HOH 435 B HOH 59 3 HOH HOH 436 B HOH 60 3 HOH HOH 437 B HOH 62 3 HOH HOH 438 B HOH 63 3 HOH HOH 439 B HOH 64 3 HOH HOH 440 B HOH 65 3 HOH HOH 441 B HOH 68 3 HOH HOH 442 B HOH 69 3 HOH HOH 443 B HOH 70 3 HOH HOH 444 B HOH 72 3 HOH HOH 445 B HOH 73 3 HOH HOH 446 B HOH 74 3 HOH HOH 447 B HOH 75 3 HOH HOH 448 B HOH 76 3 HOH HOH 449 B HOH 77 3 HOH HOH 450 B HOH 79 3 HOH HOH 451 B HOH 80 3 HOH HOH 452 B HOH 83 3 HOH HOH 453 B HOH 85 3 HOH HOH 454 B HOH 86 3 HOH HOH 455 B HOH 87 3 HOH HOH 456 B HOH 91 3 HOH HOH 457 B HOH 92 3 HOH HOH 458 B HOH 94 3 HOH HOH 459 B HOH 100 3 HOH HOH 460 B HOH 101 3 HOH HOH 461 B HOH 102 3 HOH HOH 462 B HOH 103 3 HOH HOH 463 B HOH 106 3 HOH HOH 464 B HOH 110 3 HOH HOH 465 B HOH 112 3 HOH HOH 466 B HOH 114 3 HOH HOH 467 B HOH 115 3 HOH HOH 468 B HOH 118 3 HOH HOH 469 B HOH 119 3 HOH HOH 470 B HOH 121 3 HOH HOH 471 B HOH 123 3 HOH HOH 472 B HOH 124 3 HOH HOH 473 B HOH 125 3 HOH HOH 474 B HOH 127 3 HOH HOH 475 B HOH 128 3 HOH HOH 476 B HOH 130 3 HOH HOH 477 B HOH 131 3 HOH HOH 478 B HOH 133 3 HOH HOH 479 B HOH 134 3 HOH HOH 480 B HOH 135 3 HOH HOH 481 B HOH 136 3 HOH HOH 482 B HOH 137 3 HOH HOH 483 B HOH 139 3 HOH HOH 484 B HOH 140 3 HOH HOH 485 B HOH 154 3 HOH HOH 486 B HOH 155 3 HOH HOH 487 B HOH 156 3 HOH HOH 488 B HOH 157 3 HOH HOH 489 B HOH 158 3 HOH HOH 490 B HOH 159 3 HOH HOH 491 B HOH 160 3 HOH HOH 492 B HOH 161 3 HOH HOH 493 B HOH 162 3 HOH HOH 494 B HOH 163 3 HOH HOH 495 B HOH 164 3 HOH HOH 496 B HOH 165 3 HOH HOH 497 B HOH 166 3 HOH HOH 498 B HOH 167 3 HOH HOH 499 B HOH 168 3 HOH HOH 500 B HOH 169 3 HOH HOH 501 B HOH 170 3 HOH HOH 502 B HOH 172 3 HOH HOH 503 B HOH 173 3 HOH HOH 504 B HOH 182 3 HOH HOH 505 B HOH 184 3 HOH HOH 506 B HOH 185 3 HOH HOH 507 B HOH 186 3 HOH HOH 508 B HOH 188 3 HOH HOH 509 B HOH 190 3 HOH HOH 510 B HOH 191 3 HOH HOH 511 B HOH 192 3 HOH HOH 512 B HOH 195 3 HOH HOH 513 B HOH 197 3 HOH HOH 514 B HOH 198 3 HOH HOH 515 B n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A n 5 2 A PHE 3 n 6 PHE 3 A ASP 4 n 7 ASP 4 A ASP 5 n 8 ASP 5 A SER 6 n 9 SER 6 A LYS 7 n 10 LYS 7 A PRO 8 n 11 PRO 8 A ILE 9 n 12 ILE 9 A TYR 10 n 13 TYR 10 A LYS 11 n 14 LYS 11 A GLN 12 n 15 GLN 12 A ILE 13 n 16 ILE 13 A VAL 14 n 17 VAL 14 A HIS 15 n 18 HIS 15 A TYR 16 n 19 TYR 16 A ILE 17 n 20 ILE 17 A HIS 18 n 21 HIS 18 A THR 19 n 22 THR 19 A GLU 20 n 23 GLU 20 A ILE 21 n 24 ILE 21 A VAL 22 n 25 VAL 22 A THR 23 n 26 THR 23 A GLY 24 n 27 GLY 24 A THR 25 n 28 THR 25 A TYR 26 n 29 TYR 26 A GLU 27 n 30 GLU 27 A ALA 28 n 31 ALA 28 A GLY 29 n 32 GLY 29 A ASP 30 n 33 ASP 30 A LYS 31 n 34 LYS 31 A LEU 32 n 35 LEU 32 A LEU 33 n 36 LEU 33 A SER 34 n 37 SER 34 A VAL 35 n 38 VAL 35 A ARG 36 n 39 ARG 36 A GLU 37 n 40 GLU 37 A LEU 38 n 41 LEU 38 A ALA 39 n 42 ALA 39 A THR 40 n 43 THR 40 A LYS 41 n 44 LYS 41 A LEU 42 n 45 LEU 42 A GLU 43 n 46 GLU 43 A VAL 44 n 47 VAL 44 A ASN 45 n 48 ASN 45 A PRO 46 n 49 PRO 46 A THR 47 n 50 THR 47 A THR 48 n 51 THR 48 A ILE 49 n 52 ILE 49 A GLN 50 n 53 GLN 50 A ARG 51 n 54 ARG 51 A ALA 52 n 55 ALA 52 A TYR 53 n 56 TYR 53 A ALA 54 n 57 ALA 54 A GLU 55 n 58 GLU 55 A LEU 56 n 59 LEU 56 A GLU 57 n 60 GLU 57 A GLU 58 n 61 GLU 58 A THR 59 n 62 THR 59 A GLU 60 n 63 GLU 60 A ILE 61 n 64 ILE 61 A ILE 62 n 65 ILE 62 A TYR 63 n 66 TYR 63 A THR 64 n 67 THR 64 A VAL 65 n 68 VAL 65 A ARG 66 n 69 ARG 66 A GLY 67 n 70 GLY 67 A THR 68 n 71 THR 68 A GLY 69 n 72 GLY 69 A LYS 70 n 73 LYS 70 A TYR 71 n 74 TYR 71 A LEU 72 n 75 LEU 72 A THR 73 n 76 THR 73 A GLU 74 n 77 GLU 74 A ASP 75 n 78 ASP 75 A LYS 76 n 79 LYS 76 A ARG 77 n 80 ARG 77 A ARG 78 n 81 ARG 78 A ILE 79 n 82 ILE 79 A GLU 80 n 83 GLU 80 A GLN 81 n 84 GLN 81 A LEU 82 n 85 LEU 82 A GLU 83 n 86 GLU 83 A ASN 84 n 87 ASN 84 A ASP 85 n 88 ASP 85 A ILE 86 n 89 ILE 86 A ALA 87 n 90 ALA 87 A LYS 88 n 91 LYS 88 A GLN 89 n 92 GLN 89 A LEU 90 n 93 LEU 90 A THR 91 n 94 THR 91 A GLU 92 n 95 GLU 92 A ASN 93 n 96 ASN 93 A PHE 94 n 97 PHE 94 A ILE 95 n 98 ILE 95 A SER 96 n 99 SER 96 A GLU 97 n 100 GLU 97 A MSE 98 n 101 MSE 98 A SER 99 n 102 SER 99 A LYS 100 n 103 LYS 100 A LEU 101 n 104 LEU 101 A GLY 102 n 105 GLY 102 A ILE 103 n 106 ILE 103 A ASN 104 n 107 ASN 104 A LYS 105 n 108 LYS 105 A GLU 106 n 109 GLU 106 A LYS 107 n 110 LYS 107 A ILE 108 n 111 ILE 108 A ILE 109 n 112 ILE 109 A ALA 110 n 113 ALA 110 A TRP 111 n 114 TRP 111 A VAL 112 n 115 VAL 112 A LYS 113 n 116 LYS 113 A LYS 114 n 117 LYS 114 A VAL 115 n 118 VAL 115 A GLU 116 n 119 GLU 116 A GLU 117 n 120 GLU 117 A VAL 118 n 121 VAL 118 A n 122 119 A n 123 120 A n 124 121 A n 125 122 A n 126 123 A n 127 124 A n 128 125 A n 1 -2 B n 2 -1 B n 3 0 B n 4 1 B n 5 2 B PHE 3 n 6 PHE 3 B ASP 4 n 7 ASP 4 B ASP 5 n 8 ASP 5 B SER 6 n 9 SER 6 B LYS 7 n 10 LYS 7 B PRO 8 n 11 PRO 8 B ILE 9 n 12 ILE 9 B TYR 10 n 13 TYR 10 B LYS 11 n 14 LYS 11 B GLN 12 n 15 GLN 12 B ILE 13 n 16 ILE 13 B VAL 14 n 17 VAL 14 B HIS 15 n 18 HIS 15 B TYR 16 n 19 TYR 16 B ILE 17 n 20 ILE 17 B HIS 18 n 21 HIS 18 B THR 19 n 22 THR 19 B GLU 20 n 23 GLU 20 B ILE 21 n 24 ILE 21 B VAL 22 n 25 VAL 22 B THR 23 n 26 THR 23 B GLY 24 n 27 GLY 24 B THR 25 n 28 THR 25 B TYR 26 n 29 TYR 26 B GLU 27 n 30 GLU 27 B ALA 28 n 31 ALA 28 B GLY 29 n 32 GLY 29 B ASP 30 n 33 ASP 30 B LYS 31 n 34 LYS 31 B LEU 32 n 35 LEU 32 B LEU 33 n 36 LEU 33 B SER 34 n 37 SER 34 B VAL 35 n 38 VAL 35 B ARG 36 n 39 ARG 36 B GLU 37 n 40 GLU 37 B LEU 38 n 41 LEU 38 B ALA 39 n 42 ALA 39 B THR 40 n 43 THR 40 B LYS 41 n 44 LYS 41 B LEU 42 n 45 LEU 42 B GLU 43 n 46 GLU 43 B VAL 44 n 47 VAL 44 B ASN 45 n 48 ASN 45 B PRO 46 n 49 PRO 46 B THR 47 n 50 THR 47 B THR 48 n 51 THR 48 B ILE 49 n 52 ILE 49 B GLN 50 n 53 GLN 50 B ARG 51 n 54 ARG 51 B ALA 52 n 55 ALA 52 B TYR 53 n 56 TYR 53 B ALA 54 n 57 ALA 54 B GLU 55 n 58 GLU 55 B LEU 56 n 59 LEU 56 B GLU 57 n 60 GLU 57 B GLU 58 n 61 GLU 58 B THR 59 n 62 THR 59 B GLU 60 n 63 GLU 60 B ILE 61 n 64 ILE 61 B ILE 62 n 65 ILE 62 B TYR 63 n 66 TYR 63 B THR 64 n 67 THR 64 B VAL 65 n 68 VAL 65 B ARG 66 n 69 ARG 66 B GLY 67 n 70 GLY 67 B THR 68 n 71 THR 68 B GLY 69 n 72 GLY 69 B LYS 70 n 73 LYS 70 B TYR 71 n 74 TYR 71 B LEU 72 n 75 LEU 72 B THR 73 n 76 THR 73 B GLU 74 n 77 GLU 74 B ASP 75 n 78 ASP 75 B LYS 76 n 79 LYS 76 B ARG 77 n 80 ARG 77 B ARG 78 n 81 ARG 78 B ILE 79 n 82 ILE 79 B GLU 80 n 83 GLU 80 B GLN 81 n 84 GLN 81 B LEU 82 n 85 LEU 82 B GLU 83 n 86 GLU 83 B ASN 84 n 87 ASN 84 B ASP 85 n 88 ASP 85 B ILE 86 n 89 ILE 86 B ALA 87 n 90 ALA 87 B LYS 88 n 91 LYS 88 B GLN 89 n 92 GLN 89 B LEU 90 n 93 LEU 90 B THR 91 n 94 THR 91 B GLU 92 n 95 GLU 92 B ASN 93 n 96 ASN 93 B PHE 94 n 97 PHE 94 B ILE 95 n 98 ILE 95 B SER 96 n 99 SER 96 B GLU 97 n 100 GLU 97 B MSE 98 n 101 MSE 98 B SER 99 n 102 SER 99 B LYS 100 n 103 LYS 100 B LEU 101 n 104 LEU 101 B GLY 102 n 105 GLY 102 B ILE 103 n 106 ILE 103 B ASN 104 n 107 ASN 104 B LYS 105 n 108 LYS 105 B GLU 106 n 109 GLU 106 B LYS 107 n 110 LYS 107 B ILE 108 n 111 ILE 108 B ILE 109 n 112 ILE 109 B ALA 110 n 113 ALA 110 B TRP 111 n 114 TRP 111 B VAL 112 n 115 VAL 112 B LYS 113 n 116 LYS 113 B LYS 114 n 117 LYS 114 B VAL 115 n 118 VAL 115 B GLU 116 n 119 GLU 116 B n 120 117 B n 121 118 B n 122 119 B n 123 120 B n 124 121 B n 125 122 B n 126 123 B n 127 124 B n 128 125 B 1.9638 -0.0258 -2.5832 0.1406 0.0939 3.5321 -0.0636 -0.0664 -0.0990 -0.0557 0.0037 0.0267 0.0755 0.1294 0.0599 0.0371 -0.0142 -0.0229 0.0640 -0.0193 0.0702 refined 34.2900 12.0309 23.7057 X-RAY DIFFRACTION 2.9627 1.6201 -0.2867 1.0108 -0.0063 0.2795 -0.0609 0.0996 -0.1958 -0.0493 0.0358 -0.0740 0.0181 -0.0145 0.0251 0.0282 0.0158 0.0078 0.0158 -0.0023 0.0897 refined 12.9062 1.6839 39.3574 X-RAY DIFFRACTION A 3 A 118 X-RAY DIFFRACTION 1 B 3 B 116 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 2 dimeric 3060 -28 13820 A MSE 98 SELENOMETHIONINE A MSE 101 MET B MSE 98 SELENOMETHIONINE B MSE 101 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 65 A N VAL 68 A O GLY 69 A O GLY 72 B N VAL 65 B N VAL 68 B O GLY 69 B O GLY 72 1 A SER -2 A SER 1 1 Y 1 A ASN -1 A ASN 2 1 Y 1 A ALA 0 A ALA 3 1 Y 1 A MSE 1 A MSE 4 1 Y 1 A LYS 2 A LYS 5 1 Y 1 A GLU 119 A GLU 122 1 Y 1 A VAL 120 A VAL 123 1 Y 1 A ASN 121 A ASN 124 1 Y 1 A VAL 122 A VAL 125 1 Y 1 A SER 123 A SER 126 1 Y 1 A GLY 124 A GLY 127 1 Y 1 A LYS 125 A LYS 128 1 Y 1 B SER -2 B SER 1 1 Y 1 B ASN -1 B ASN 2 1 Y 1 B ALA 0 B ALA 3 1 Y 1 B MSE 1 B MSE 4 1 Y 1 B LYS 2 B LYS 5 1 Y 1 B GLU 117 B GLU 120 1 Y 1 B VAL 118 B VAL 121 1 Y 1 B GLU 119 B GLU 122 1 Y 1 B VAL 120 B VAL 123 1 Y 1 B ASN 121 B ASN 124 1 Y 1 B VAL 122 B VAL 125 1 Y 1 B SER 123 B SER 126 1 Y 1 B GLY 124 B GLY 127 1 Y 1 B LYS 125 B LYS 128 1 Y 1 A B O O HOH HOH 385 421 2.19 1_555 3_655 1 B ARG 66 -39.74 124.95 1 B THR 73 -39.02 139.80 112.450 35.6700 16.710 -0.4700 -0.0000 0.0000 1.0900 0.0000 -0.6200 0.9670 0.9530 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED 0.2088 0.1700 0.1720 1.7600 31.7 1541 31447 31447 4.9000 99.8500 4.1750 0.0670 RANDOM 1 THROUGHOUT 0.000 0 SAD 0.0980 0.1010 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD MASK 1.7600 31.7 201 2089 8 0 1880 0.019 0.019 2024 0.001 0.020 2035 1.765 1.980 2750 0.857 3.000 4716 5.081 5.000 260 40.486 24.898 98 14.333 15.000 414 13.669 15.000 14 0.111 0.200 322 0.008 0.020 2242 0.001 0.020 428 2.368 2.431 952 2.332 2.422 949 3.489 3.612 1192 0.2700 0.2500 1.8070 113 2190 2303 2303 20 99.5700 37.2 1.760 31.7 4R1H 31502 31502 0 0 0.069 1.595 1 11.400 7.500 99.900 0.781 1.760 1.790 2.06 1551 0.770 1 6.200 100.000 0.627 1.790 1.820 1559 0.780 1 6.700 100.000 0.506 1.820 1.860 1569 0.819 1 7.400 100.000 0.421 1.860 1.900 1529 0.900 1 7.700 100.000 0.334 1.900 1.940 1552 0.962 1 7.700 100.000 0.280 1.940 1.980 1550 1.032 1 7.700 100.000 0.226 1.980 2.030 1549 1.100 1 7.700 100.000 0.195 2.030 2.090 1565 1.203 1 7.700 100.000 0.156 2.090 2.150 1552 1.422 1 7.800 100.000 0.137 2.150 2.220 1564 1.507 1 7.700 100.000 0.115 2.220 2.300 1553 1.641 1 7.700 100.000 0.101 2.300 2.390 1564 1.682 1 7.700 100.000 0.095 2.390 2.500 1572 1.818 1 7.700 100.000 0.086 2.500 2.630 1596 2.022 1 7.700 100.000 0.073 2.630 2.790 1553 2.079 1 7.700 100.000 0.067 2.790 3.010 1604 2.184 1 7.600 100.000 0.064 3.010 3.310 1577 2.165 1 7.500 100.000 0.060 3.310 3.790 1619 1.988 1 7.300 100.000 0.046 3.790 4.780 1623 2.084 1 7.200 100.000 0.043 4.780 50.000 1701 3.505 1 6.900 97.900 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.8.0073 data extraction PDB deposit@deposit.rcsb.org Dec. 10, 2013 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.14 data collection SBC-Collect data reduction HKL-3000 data scaling HKL-3000 phasing SHELXCD phasing SHELXD phasing MLPHARE phasing DM model building ARP/wARP phasing HKL-3000 Lmo0741 protein GntR family transcriptional regulator from Listeria monocytogenes 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A PRO 8 A PRO 11 HELX_P A THR 23 A THR 26 1 1 16 A SER 34 A SER 37 HELX_P A GLU 43 A GLU 46 1 2 10 A ASN 45 A ASN 48 HELX_P A THR 59 A THR 62 1 3 15 A ASP 75 A ASP 78 HELX_P A LEU 101 A LEU 104 1 4 27 A ASN 104 A ASN 107 HELX_P A VAL 115 A VAL 118 1 5 12 B PRO 8 B PRO 11 HELX_P B THR 23 B THR 26 1 6 16 B SER 34 B SER 37 HELX_P B GLU 43 B GLU 46 1 7 10 B ASN 45 B ASN 48 HELX_P B THR 59 B THR 62 1 8 15 B ASP 75 B ASP 78 HELX_P B LEU 101 B LEU 104 1 9 27 B ASN 104 B ASN 107 HELX_P B VAL 115 B VAL 118 1 10 12 covale 1.301 A GLU 97 A C GLU 100 1_555 A MSE 98 A N MSE 101 1_555 covale 1.327 A MSE 98 A C MSE 101 1_555 A SER 99 A N SER 102 1_555 covale 1.321 B GLU 97 B C GLU 100 1_555 B MSE 98 B N MSE 101 1_555 covale 1.322 B MSE 98 B C MSE 101 1_555 B SER 99 B N SER 102 1_555 TRANSCRIPTION REGULATOR structural genomics, APC106832, Winged helix-turn-helix, DNA-binding, GntR family, transcriptional regulator, PSI-Biology, Midwest Center for Structural Genomics, MCSG, TRANSCRIPTION REGULATOR Q8Y901_LISMO UNP 1 1 Q8Y901 MKFDDSKPIYKQIVHYIHTEIVTGTYEAGDKLLSVRELATKLEVNPTTIQRAYAELEETEIIYTVRGTGKYLTEDKRRIE QLENDIAKQLTENFISEMSKLGINKEKIIAWVKKVEEVEVNVSGK 1 125 4R1H 1 125 Q8Y901 A 1 4 128 1 125 4R1H 1 125 Q8Y901 B 1 4 128 1 EXPRESSION TAG SER -2 4R1H A Q8Y901 UNP 1 1 EXPRESSION TAG ASN -1 4R1H A Q8Y901 UNP 2 1 EXPRESSION TAG ALA 0 4R1H A Q8Y901 UNP 3 2 EXPRESSION TAG SER -2 4R1H B Q8Y901 UNP 1 2 EXPRESSION TAG ASN -1 4R1H B Q8Y901 UNP 2 2 EXPRESSION TAG ALA 0 4R1H B Q8Y901 UNP 3 2 2 anti-parallel anti-parallel A ILE 62 A ILE 65 A VAL 65 A VAL 68 A GLY 69 A GLY 72 A LEU 72 A LEU 75 B ILE 62 B ILE 65 B VAL 65 B VAL 68 B GLY 69 B GLY 72 B LEU 72 B LEU 75 BINDING SITE FOR RESIDUE ACT A 201 Software 3 BINDING SITE FOR RESIDUE ACT B 301 Software 5 A HIS 18 A HIS 21 3 1_555 A HOH 331 E HOH 3 1_555 A HOH 343 E HOH 3 1_555 B ILE 86 B ILE 89 5 1_555 B HOH 419 F HOH 5 1_555 B HOH 452 F HOH 5 1_555 B HOH 460 F HOH 5 1_555 B HOH 461 F HOH 5 1_555 19 P 21 21 21