0.018508
0.000000
0.000000
-0.000000
0.014620
0.000000
0.000000
-0.000000
0.011902
0.000000
0.000000
0.000000
Osipiuk, J.
Mack, J.
Clancy, S.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
54.032
68.398
84.016
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
GntR family transcriptional regulator from Listeria monocytogenes
100
1
CCD
2014-06-02
ADSC QUANTUM 315r
double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
19-ID
APS
0.9792
SYNCHROTRON
APS BEAMLINE 19-ID
14821.556
Lmo0741 protein
2
man
polymer
59.044
ACETATE ION
2
syn
non-polymer
18.015
water
201
nat
water
no
yes
SNA(MSE)KFDDSKPIYKQIVHYIHTEIVTGTYEAGDKLLSVRELATKLEVNPTTIQRAYAELEETEIIYTVRGTGKYLT
EDKRRIEQLENDIAKQLTENFISE(MSE)SKLGINKEKIIAWVKKVEEVEVNVSGK
SNAMKFDDSKPIYKQIVHYIHTEIVTGTYEAGDKLLSVRELATKLEVNPTTIQRAYAELEETEIIYTVRGTGKYLTEDKR
RIEQLENDIAKQLTENFISEMSKLGINKEKIIAWVKKVEEVEVNVSGK
A,B
MCSG-APC106832
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
EGD-e
sample
lmo0741
169963
Listeria monocytogenes
469008
Escherichia coli
BL21(DE3)
plasmid
pMCSG73
1
2.62
53.03
VAPOR DIFFUSION, SITTING DROP
8.5
0.17 M sodium acetate, 0.085 M Tris-HCl buffer, 25.5% PEG 4000, 15% glycerol, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 297K
297
Midwest Center for Structural Genomics
MCSG
PSI:Biology
software
repository
Initial release
Refinement description
1
0
2014-08-20
1
1
2017-11-22
Y
RCSB
Y
RCSB
2014-08-05
REL
REL
ACT
ACETATE ION
HOH
water
ACT
302
2
ACT
ACT
201
A
ACT
301
2
ACT
ACT
301
B
HOH
1
3
HOH
HOH
301
A
HOH
3
3
HOH
HOH
302
A
HOH
5
3
HOH
HOH
303
A
HOH
6
3
HOH
HOH
304
A
HOH
9
3
HOH
HOH
305
A
HOH
10
3
HOH
HOH
306
A
HOH
11
3
HOH
HOH
307
A
HOH
12
3
HOH
HOH
308
A
HOH
21
3
HOH
HOH
309
A
HOH
29
3
HOH
HOH
310
A
HOH
30
3
HOH
HOH
311
A
HOH
33
3
HOH
HOH
312
A
HOH
35
3
HOH
HOH
313
A
HOH
36
3
HOH
HOH
314
A
HOH
39
3
HOH
HOH
315
A
HOH
40
3
HOH
HOH
316
A
HOH
42
3
HOH
HOH
317
A
HOH
43
3
HOH
HOH
318
A
HOH
49
3
HOH
HOH
319
A
HOH
52
3
HOH
HOH
320
A
HOH
54
3
HOH
HOH
321
A
HOH
55
3
HOH
HOH
322
A
HOH
57
3
HOH
HOH
323
A
HOH
61
3
HOH
HOH
324
A
HOH
66
3
HOH
HOH
325
A
HOH
67
3
HOH
HOH
326
A
HOH
71
3
HOH
HOH
327
A
HOH
78
3
HOH
HOH
328
A
HOH
81
3
HOH
HOH
329
A
HOH
82
3
HOH
HOH
330
A
HOH
84
3
HOH
HOH
331
A
HOH
88
3
HOH
HOH
332
A
HOH
89
3
HOH
HOH
333
A
HOH
90
3
HOH
HOH
334
A
HOH
93
3
HOH
HOH
335
A
HOH
95
3
HOH
HOH
336
A
HOH
96
3
HOH
HOH
337
A
HOH
97
3
HOH
HOH
338
A
HOH
98
3
HOH
HOH
339
A
HOH
99
3
HOH
HOH
340
A
HOH
104
3
HOH
HOH
341
A
HOH
105
3
HOH
HOH
342
A
HOH
107
3
HOH
HOH
343
A
HOH
108
3
HOH
HOH
344
A
HOH
109
3
HOH
HOH
345
A
HOH
111
3
HOH
HOH
346
A
HOH
113
3
HOH
HOH
347
A
HOH
116
3
HOH
HOH
348
A
HOH
117
3
HOH
HOH
349
A
HOH
120
3
HOH
HOH
350
A
HOH
122
3
HOH
HOH
351
A
HOH
126
3
HOH
HOH
352
A
HOH
129
3
HOH
HOH
353
A
HOH
132
3
HOH
HOH
354
A
HOH
138
3
HOH
HOH
355
A
HOH
141
3
HOH
HOH
356
A
HOH
142
3
HOH
HOH
357
A
HOH
143
3
HOH
HOH
358
A
HOH
144
3
HOH
HOH
359
A
HOH
145
3
HOH
HOH
360
A
HOH
146
3
HOH
HOH
361
A
HOH
147
3
HOH
HOH
362
A
HOH
148
3
HOH
HOH
363
A
HOH
149
3
HOH
HOH
364
A
HOH
150
3
HOH
HOH
365
A
HOH
151
3
HOH
HOH
366
A
HOH
152
3
HOH
HOH
367
A
HOH
153
3
HOH
HOH
368
A
HOH
171
3
HOH
HOH
369
A
HOH
174
3
HOH
HOH
370
A
HOH
175
3
HOH
HOH
371
A
HOH
176
3
HOH
HOH
372
A
HOH
177
3
HOH
HOH
373
A
HOH
178
3
HOH
HOH
374
A
HOH
179
3
HOH
HOH
375
A
HOH
180
3
HOH
HOH
376
A
HOH
181
3
HOH
HOH
377
A
HOH
183
3
HOH
HOH
378
A
HOH
187
3
HOH
HOH
379
A
HOH
189
3
HOH
HOH
380
A
HOH
193
3
HOH
HOH
381
A
HOH
194
3
HOH
HOH
382
A
HOH
196
3
HOH
HOH
383
A
HOH
199
3
HOH
HOH
384
A
HOH
200
3
HOH
HOH
385
A
HOH
201
3
HOH
HOH
386
A
HOH
2
3
HOH
HOH
401
B
HOH
4
3
HOH
HOH
402
B
HOH
7
3
HOH
HOH
403
B
HOH
8
3
HOH
HOH
404
B
HOH
13
3
HOH
HOH
405
B
HOH
14
3
HOH
HOH
406
B
HOH
15
3
HOH
HOH
407
B
HOH
16
3
HOH
HOH
408
B
HOH
17
3
HOH
HOH
409
B
HOH
18
3
HOH
HOH
410
B
HOH
19
3
HOH
HOH
411
B
HOH
20
3
HOH
HOH
412
B
HOH
22
3
HOH
HOH
413
B
HOH
23
3
HOH
HOH
414
B
HOH
24
3
HOH
HOH
415
B
HOH
25
3
HOH
HOH
416
B
HOH
26
3
HOH
HOH
417
B
HOH
27
3
HOH
HOH
418
B
HOH
28
3
HOH
HOH
419
B
HOH
31
3
HOH
HOH
420
B
HOH
32
3
HOH
HOH
421
B
HOH
34
3
HOH
HOH
422
B
HOH
37
3
HOH
HOH
423
B
HOH
38
3
HOH
HOH
424
B
HOH
41
3
HOH
HOH
425
B
HOH
44
3
HOH
HOH
426
B
HOH
45
3
HOH
HOH
427
B
HOH
46
3
HOH
HOH
428
B
HOH
47
3
HOH
HOH
429
B
HOH
48
3
HOH
HOH
430
B
HOH
50
3
HOH
HOH
431
B
HOH
51
3
HOH
HOH
432
B
HOH
53
3
HOH
HOH
433
B
HOH
56
3
HOH
HOH
434
B
HOH
58
3
HOH
HOH
435
B
HOH
59
3
HOH
HOH
436
B
HOH
60
3
HOH
HOH
437
B
HOH
62
3
HOH
HOH
438
B
HOH
63
3
HOH
HOH
439
B
HOH
64
3
HOH
HOH
440
B
HOH
65
3
HOH
HOH
441
B
HOH
68
3
HOH
HOH
442
B
HOH
69
3
HOH
HOH
443
B
HOH
70
3
HOH
HOH
444
B
HOH
72
3
HOH
HOH
445
B
HOH
73
3
HOH
HOH
446
B
HOH
74
3
HOH
HOH
447
B
HOH
75
3
HOH
HOH
448
B
HOH
76
3
HOH
HOH
449
B
HOH
77
3
HOH
HOH
450
B
HOH
79
3
HOH
HOH
451
B
HOH
80
3
HOH
HOH
452
B
HOH
83
3
HOH
HOH
453
B
HOH
85
3
HOH
HOH
454
B
HOH
86
3
HOH
HOH
455
B
HOH
87
3
HOH
HOH
456
B
HOH
91
3
HOH
HOH
457
B
HOH
92
3
HOH
HOH
458
B
HOH
94
3
HOH
HOH
459
B
HOH
100
3
HOH
HOH
460
B
HOH
101
3
HOH
HOH
461
B
HOH
102
3
HOH
HOH
462
B
HOH
103
3
HOH
HOH
463
B
HOH
106
3
HOH
HOH
464
B
HOH
110
3
HOH
HOH
465
B
HOH
112
3
HOH
HOH
466
B
HOH
114
3
HOH
HOH
467
B
HOH
115
3
HOH
HOH
468
B
HOH
118
3
HOH
HOH
469
B
HOH
119
3
HOH
HOH
470
B
HOH
121
3
HOH
HOH
471
B
HOH
123
3
HOH
HOH
472
B
HOH
124
3
HOH
HOH
473
B
HOH
125
3
HOH
HOH
474
B
HOH
127
3
HOH
HOH
475
B
HOH
128
3
HOH
HOH
476
B
HOH
130
3
HOH
HOH
477
B
HOH
131
3
HOH
HOH
478
B
HOH
133
3
HOH
HOH
479
B
HOH
134
3
HOH
HOH
480
B
HOH
135
3
HOH
HOH
481
B
HOH
136
3
HOH
HOH
482
B
HOH
137
3
HOH
HOH
483
B
HOH
139
3
HOH
HOH
484
B
HOH
140
3
HOH
HOH
485
B
HOH
154
3
HOH
HOH
486
B
HOH
155
3
HOH
HOH
487
B
HOH
156
3
HOH
HOH
488
B
HOH
157
3
HOH
HOH
489
B
HOH
158
3
HOH
HOH
490
B
HOH
159
3
HOH
HOH
491
B
HOH
160
3
HOH
HOH
492
B
HOH
161
3
HOH
HOH
493
B
HOH
162
3
HOH
HOH
494
B
HOH
163
3
HOH
HOH
495
B
HOH
164
3
HOH
HOH
496
B
HOH
165
3
HOH
HOH
497
B
HOH
166
3
HOH
HOH
498
B
HOH
167
3
HOH
HOH
499
B
HOH
168
3
HOH
HOH
500
B
HOH
169
3
HOH
HOH
501
B
HOH
170
3
HOH
HOH
502
B
HOH
172
3
HOH
HOH
503
B
HOH
173
3
HOH
HOH
504
B
HOH
182
3
HOH
HOH
505
B
HOH
184
3
HOH
HOH
506
B
HOH
185
3
HOH
HOH
507
B
HOH
186
3
HOH
HOH
508
B
HOH
188
3
HOH
HOH
509
B
HOH
190
3
HOH
HOH
510
B
HOH
191
3
HOH
HOH
511
B
HOH
192
3
HOH
HOH
512
B
HOH
195
3
HOH
HOH
513
B
HOH
197
3
HOH
HOH
514
B
HOH
198
3
HOH
HOH
515
B
n
1
-2
A
n
2
-1
A
n
3
0
A
n
4
1
A
n
5
2
A
PHE
3
n
6
PHE
3
A
ASP
4
n
7
ASP
4
A
ASP
5
n
8
ASP
5
A
SER
6
n
9
SER
6
A
LYS
7
n
10
LYS
7
A
PRO
8
n
11
PRO
8
A
ILE
9
n
12
ILE
9
A
TYR
10
n
13
TYR
10
A
LYS
11
n
14
LYS
11
A
GLN
12
n
15
GLN
12
A
ILE
13
n
16
ILE
13
A
VAL
14
n
17
VAL
14
A
HIS
15
n
18
HIS
15
A
TYR
16
n
19
TYR
16
A
ILE
17
n
20
ILE
17
A
HIS
18
n
21
HIS
18
A
THR
19
n
22
THR
19
A
GLU
20
n
23
GLU
20
A
ILE
21
n
24
ILE
21
A
VAL
22
n
25
VAL
22
A
THR
23
n
26
THR
23
A
GLY
24
n
27
GLY
24
A
THR
25
n
28
THR
25
A
TYR
26
n
29
TYR
26
A
GLU
27
n
30
GLU
27
A
ALA
28
n
31
ALA
28
A
GLY
29
n
32
GLY
29
A
ASP
30
n
33
ASP
30
A
LYS
31
n
34
LYS
31
A
LEU
32
n
35
LEU
32
A
LEU
33
n
36
LEU
33
A
SER
34
n
37
SER
34
A
VAL
35
n
38
VAL
35
A
ARG
36
n
39
ARG
36
A
GLU
37
n
40
GLU
37
A
LEU
38
n
41
LEU
38
A
ALA
39
n
42
ALA
39
A
THR
40
n
43
THR
40
A
LYS
41
n
44
LYS
41
A
LEU
42
n
45
LEU
42
A
GLU
43
n
46
GLU
43
A
VAL
44
n
47
VAL
44
A
ASN
45
n
48
ASN
45
A
PRO
46
n
49
PRO
46
A
THR
47
n
50
THR
47
A
THR
48
n
51
THR
48
A
ILE
49
n
52
ILE
49
A
GLN
50
n
53
GLN
50
A
ARG
51
n
54
ARG
51
A
ALA
52
n
55
ALA
52
A
TYR
53
n
56
TYR
53
A
ALA
54
n
57
ALA
54
A
GLU
55
n
58
GLU
55
A
LEU
56
n
59
LEU
56
A
GLU
57
n
60
GLU
57
A
GLU
58
n
61
GLU
58
A
THR
59
n
62
THR
59
A
GLU
60
n
63
GLU
60
A
ILE
61
n
64
ILE
61
A
ILE
62
n
65
ILE
62
A
TYR
63
n
66
TYR
63
A
THR
64
n
67
THR
64
A
VAL
65
n
68
VAL
65
A
ARG
66
n
69
ARG
66
A
GLY
67
n
70
GLY
67
A
THR
68
n
71
THR
68
A
GLY
69
n
72
GLY
69
A
LYS
70
n
73
LYS
70
A
TYR
71
n
74
TYR
71
A
LEU
72
n
75
LEU
72
A
THR
73
n
76
THR
73
A
GLU
74
n
77
GLU
74
A
ASP
75
n
78
ASP
75
A
LYS
76
n
79
LYS
76
A
ARG
77
n
80
ARG
77
A
ARG
78
n
81
ARG
78
A
ILE
79
n
82
ILE
79
A
GLU
80
n
83
GLU
80
A
GLN
81
n
84
GLN
81
A
LEU
82
n
85
LEU
82
A
GLU
83
n
86
GLU
83
A
ASN
84
n
87
ASN
84
A
ASP
85
n
88
ASP
85
A
ILE
86
n
89
ILE
86
A
ALA
87
n
90
ALA
87
A
LYS
88
n
91
LYS
88
A
GLN
89
n
92
GLN
89
A
LEU
90
n
93
LEU
90
A
THR
91
n
94
THR
91
A
GLU
92
n
95
GLU
92
A
ASN
93
n
96
ASN
93
A
PHE
94
n
97
PHE
94
A
ILE
95
n
98
ILE
95
A
SER
96
n
99
SER
96
A
GLU
97
n
100
GLU
97
A
MSE
98
n
101
MSE
98
A
SER
99
n
102
SER
99
A
LYS
100
n
103
LYS
100
A
LEU
101
n
104
LEU
101
A
GLY
102
n
105
GLY
102
A
ILE
103
n
106
ILE
103
A
ASN
104
n
107
ASN
104
A
LYS
105
n
108
LYS
105
A
GLU
106
n
109
GLU
106
A
LYS
107
n
110
LYS
107
A
ILE
108
n
111
ILE
108
A
ILE
109
n
112
ILE
109
A
ALA
110
n
113
ALA
110
A
TRP
111
n
114
TRP
111
A
VAL
112
n
115
VAL
112
A
LYS
113
n
116
LYS
113
A
LYS
114
n
117
LYS
114
A
VAL
115
n
118
VAL
115
A
GLU
116
n
119
GLU
116
A
GLU
117
n
120
GLU
117
A
VAL
118
n
121
VAL
118
A
n
122
119
A
n
123
120
A
n
124
121
A
n
125
122
A
n
126
123
A
n
127
124
A
n
128
125
A
n
1
-2
B
n
2
-1
B
n
3
0
B
n
4
1
B
n
5
2
B
PHE
3
n
6
PHE
3
B
ASP
4
n
7
ASP
4
B
ASP
5
n
8
ASP
5
B
SER
6
n
9
SER
6
B
LYS
7
n
10
LYS
7
B
PRO
8
n
11
PRO
8
B
ILE
9
n
12
ILE
9
B
TYR
10
n
13
TYR
10
B
LYS
11
n
14
LYS
11
B
GLN
12
n
15
GLN
12
B
ILE
13
n
16
ILE
13
B
VAL
14
n
17
VAL
14
B
HIS
15
n
18
HIS
15
B
TYR
16
n
19
TYR
16
B
ILE
17
n
20
ILE
17
B
HIS
18
n
21
HIS
18
B
THR
19
n
22
THR
19
B
GLU
20
n
23
GLU
20
B
ILE
21
n
24
ILE
21
B
VAL
22
n
25
VAL
22
B
THR
23
n
26
THR
23
B
GLY
24
n
27
GLY
24
B
THR
25
n
28
THR
25
B
TYR
26
n
29
TYR
26
B
GLU
27
n
30
GLU
27
B
ALA
28
n
31
ALA
28
B
GLY
29
n
32
GLY
29
B
ASP
30
n
33
ASP
30
B
LYS
31
n
34
LYS
31
B
LEU
32
n
35
LEU
32
B
LEU
33
n
36
LEU
33
B
SER
34
n
37
SER
34
B
VAL
35
n
38
VAL
35
B
ARG
36
n
39
ARG
36
B
GLU
37
n
40
GLU
37
B
LEU
38
n
41
LEU
38
B
ALA
39
n
42
ALA
39
B
THR
40
n
43
THR
40
B
LYS
41
n
44
LYS
41
B
LEU
42
n
45
LEU
42
B
GLU
43
n
46
GLU
43
B
VAL
44
n
47
VAL
44
B
ASN
45
n
48
ASN
45
B
PRO
46
n
49
PRO
46
B
THR
47
n
50
THR
47
B
THR
48
n
51
THR
48
B
ILE
49
n
52
ILE
49
B
GLN
50
n
53
GLN
50
B
ARG
51
n
54
ARG
51
B
ALA
52
n
55
ALA
52
B
TYR
53
n
56
TYR
53
B
ALA
54
n
57
ALA
54
B
GLU
55
n
58
GLU
55
B
LEU
56
n
59
LEU
56
B
GLU
57
n
60
GLU
57
B
GLU
58
n
61
GLU
58
B
THR
59
n
62
THR
59
B
GLU
60
n
63
GLU
60
B
ILE
61
n
64
ILE
61
B
ILE
62
n
65
ILE
62
B
TYR
63
n
66
TYR
63
B
THR
64
n
67
THR
64
B
VAL
65
n
68
VAL
65
B
ARG
66
n
69
ARG
66
B
GLY
67
n
70
GLY
67
B
THR
68
n
71
THR
68
B
GLY
69
n
72
GLY
69
B
LYS
70
n
73
LYS
70
B
TYR
71
n
74
TYR
71
B
LEU
72
n
75
LEU
72
B
THR
73
n
76
THR
73
B
GLU
74
n
77
GLU
74
B
ASP
75
n
78
ASP
75
B
LYS
76
n
79
LYS
76
B
ARG
77
n
80
ARG
77
B
ARG
78
n
81
ARG
78
B
ILE
79
n
82
ILE
79
B
GLU
80
n
83
GLU
80
B
GLN
81
n
84
GLN
81
B
LEU
82
n
85
LEU
82
B
GLU
83
n
86
GLU
83
B
ASN
84
n
87
ASN
84
B
ASP
85
n
88
ASP
85
B
ILE
86
n
89
ILE
86
B
ALA
87
n
90
ALA
87
B
LYS
88
n
91
LYS
88
B
GLN
89
n
92
GLN
89
B
LEU
90
n
93
LEU
90
B
THR
91
n
94
THR
91
B
GLU
92
n
95
GLU
92
B
ASN
93
n
96
ASN
93
B
PHE
94
n
97
PHE
94
B
ILE
95
n
98
ILE
95
B
SER
96
n
99
SER
96
B
GLU
97
n
100
GLU
97
B
MSE
98
n
101
MSE
98
B
SER
99
n
102
SER
99
B
LYS
100
n
103
LYS
100
B
LEU
101
n
104
LEU
101
B
GLY
102
n
105
GLY
102
B
ILE
103
n
106
ILE
103
B
ASN
104
n
107
ASN
104
B
LYS
105
n
108
LYS
105
B
GLU
106
n
109
GLU
106
B
LYS
107
n
110
LYS
107
B
ILE
108
n
111
ILE
108
B
ILE
109
n
112
ILE
109
B
ALA
110
n
113
ALA
110
B
TRP
111
n
114
TRP
111
B
VAL
112
n
115
VAL
112
B
LYS
113
n
116
LYS
113
B
LYS
114
n
117
LYS
114
B
VAL
115
n
118
VAL
115
B
GLU
116
n
119
GLU
116
B
n
120
117
B
n
121
118
B
n
122
119
B
n
123
120
B
n
124
121
B
n
125
122
B
n
126
123
B
n
127
124
B
n
128
125
B
1.9638
-0.0258
-2.5832
0.1406
0.0939
3.5321
-0.0636
-0.0664
-0.0990
-0.0557
0.0037
0.0267
0.0755
0.1294
0.0599
0.0371
-0.0142
-0.0229
0.0640
-0.0193
0.0702
refined
34.2900
12.0309
23.7057
X-RAY DIFFRACTION
2.9627
1.6201
-0.2867
1.0108
-0.0063
0.2795
-0.0609
0.0996
-0.1958
-0.0493
0.0358
-0.0740
0.0181
-0.0145
0.0251
0.0282
0.0158
0.0078
0.0158
-0.0023
0.0897
refined
12.9062
1.6839
39.3574
X-RAY DIFFRACTION
A
3
A
118
X-RAY DIFFRACTION
1
B
3
B
116
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
2
dimeric
3060
-28
13820
A
MSE
98
SELENOMETHIONINE
A
MSE
101
MET
B
MSE
98
SELENOMETHIONINE
B
MSE
101
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
65
A
N
VAL
68
A
O
GLY
69
A
O
GLY
72
B
N
VAL
65
B
N
VAL
68
B
O
GLY
69
B
O
GLY
72
1
A
SER
-2
A
SER
1
1
Y
1
A
ASN
-1
A
ASN
2
1
Y
1
A
ALA
0
A
ALA
3
1
Y
1
A
MSE
1
A
MSE
4
1
Y
1
A
LYS
2
A
LYS
5
1
Y
1
A
GLU
119
A
GLU
122
1
Y
1
A
VAL
120
A
VAL
123
1
Y
1
A
ASN
121
A
ASN
124
1
Y
1
A
VAL
122
A
VAL
125
1
Y
1
A
SER
123
A
SER
126
1
Y
1
A
GLY
124
A
GLY
127
1
Y
1
A
LYS
125
A
LYS
128
1
Y
1
B
SER
-2
B
SER
1
1
Y
1
B
ASN
-1
B
ASN
2
1
Y
1
B
ALA
0
B
ALA
3
1
Y
1
B
MSE
1
B
MSE
4
1
Y
1
B
LYS
2
B
LYS
5
1
Y
1
B
GLU
117
B
GLU
120
1
Y
1
B
VAL
118
B
VAL
121
1
Y
1
B
GLU
119
B
GLU
122
1
Y
1
B
VAL
120
B
VAL
123
1
Y
1
B
ASN
121
B
ASN
124
1
Y
1
B
VAL
122
B
VAL
125
1
Y
1
B
SER
123
B
SER
126
1
Y
1
B
GLY
124
B
GLY
127
1
Y
1
B
LYS
125
B
LYS
128
1
Y
1
A
B
O
O
HOH
HOH
385
421
2.19
1_555
3_655
1
B
ARG
66
-39.74
124.95
1
B
THR
73
-39.02
139.80
112.450
35.6700
16.710
-0.4700
-0.0000
0.0000
1.0900
0.0000
-0.6200
0.9670
0.9530
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED
0.2088
0.1700
0.1720
1.7600
31.7
1541
31447
31447
4.9000
99.8500
4.1750
0.0670
RANDOM
1
THROUGHOUT
0.000
0
SAD
0.0980
0.1010
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
1.7600
31.7
201
2089
8
0
1880
0.019
0.019
2024
0.001
0.020
2035
1.765
1.980
2750
0.857
3.000
4716
5.081
5.000
260
40.486
24.898
98
14.333
15.000
414
13.669
15.000
14
0.111
0.200
322
0.008
0.020
2242
0.001
0.020
428
2.368
2.431
952
2.332
2.422
949
3.489
3.612
1192
0.2700
0.2500
1.8070
113
2190
2303
2303
20
99.5700
37.2
1.760
31.7
4R1H
31502
31502
0
0
0.069
1.595
1
11.400
7.500
99.900
0.781
1.760
1.790
2.06
1551
0.770
1
6.200
100.000
0.627
1.790
1.820
1559
0.780
1
6.700
100.000
0.506
1.820
1.860
1569
0.819
1
7.400
100.000
0.421
1.860
1.900
1529
0.900
1
7.700
100.000
0.334
1.900
1.940
1552
0.962
1
7.700
100.000
0.280
1.940
1.980
1550
1.032
1
7.700
100.000
0.226
1.980
2.030
1549
1.100
1
7.700
100.000
0.195
2.030
2.090
1565
1.203
1
7.700
100.000
0.156
2.090
2.150
1552
1.422
1
7.800
100.000
0.137
2.150
2.220
1564
1.507
1
7.700
100.000
0.115
2.220
2.300
1553
1.641
1
7.700
100.000
0.101
2.300
2.390
1564
1.682
1
7.700
100.000
0.095
2.390
2.500
1572
1.818
1
7.700
100.000
0.086
2.500
2.630
1596
2.022
1
7.700
100.000
0.073
2.630
2.790
1553
2.079
1
7.700
100.000
0.067
2.790
3.010
1604
2.184
1
7.600
100.000
0.064
3.010
3.310
1577
2.165
1
7.500
100.000
0.060
3.310
3.790
1619
1.988
1
7.300
100.000
0.046
3.790
4.780
1623
2.084
1
7.200
100.000
0.043
4.780
50.000
1701
3.505
1
6.900
97.900
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.8.0073
data extraction
PDB
deposit@deposit.rcsb.org
Dec. 10, 2013
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.14
data collection
SBC-Collect
data reduction
HKL-3000
data scaling
HKL-3000
phasing
SHELXCD
phasing
SHELXD
phasing
MLPHARE
phasing
DM
model building
ARP/wARP
phasing
HKL-3000
Lmo0741 protein
GntR family transcriptional regulator from Listeria monocytogenes
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
PRO
8
A
PRO
11
HELX_P
A
THR
23
A
THR
26
1
1
16
A
SER
34
A
SER
37
HELX_P
A
GLU
43
A
GLU
46
1
2
10
A
ASN
45
A
ASN
48
HELX_P
A
THR
59
A
THR
62
1
3
15
A
ASP
75
A
ASP
78
HELX_P
A
LEU
101
A
LEU
104
1
4
27
A
ASN
104
A
ASN
107
HELX_P
A
VAL
115
A
VAL
118
1
5
12
B
PRO
8
B
PRO
11
HELX_P
B
THR
23
B
THR
26
1
6
16
B
SER
34
B
SER
37
HELX_P
B
GLU
43
B
GLU
46
1
7
10
B
ASN
45
B
ASN
48
HELX_P
B
THR
59
B
THR
62
1
8
15
B
ASP
75
B
ASP
78
HELX_P
B
LEU
101
B
LEU
104
1
9
27
B
ASN
104
B
ASN
107
HELX_P
B
VAL
115
B
VAL
118
1
10
12
covale
1.301
A
GLU
97
A
C
GLU
100
1_555
A
MSE
98
A
N
MSE
101
1_555
covale
1.327
A
MSE
98
A
C
MSE
101
1_555
A
SER
99
A
N
SER
102
1_555
covale
1.321
B
GLU
97
B
C
GLU
100
1_555
B
MSE
98
B
N
MSE
101
1_555
covale
1.322
B
MSE
98
B
C
MSE
101
1_555
B
SER
99
B
N
SER
102
1_555
TRANSCRIPTION REGULATOR
structural genomics, APC106832, Winged helix-turn-helix, DNA-binding, GntR family, transcriptional regulator, PSI-Biology, Midwest Center for Structural Genomics, MCSG, TRANSCRIPTION REGULATOR
Q8Y901_LISMO
UNP
1
1
Q8Y901
MKFDDSKPIYKQIVHYIHTEIVTGTYEAGDKLLSVRELATKLEVNPTTIQRAYAELEETEIIYTVRGTGKYLTEDKRRIE
QLENDIAKQLTENFISEMSKLGINKEKIIAWVKKVEEVEVNVSGK
1
125
4R1H
1
125
Q8Y901
A
1
4
128
1
125
4R1H
1
125
Q8Y901
B
1
4
128
1
EXPRESSION TAG
SER
-2
4R1H
A
Q8Y901
UNP
1
1
EXPRESSION TAG
ASN
-1
4R1H
A
Q8Y901
UNP
2
1
EXPRESSION TAG
ALA
0
4R1H
A
Q8Y901
UNP
3
2
EXPRESSION TAG
SER
-2
4R1H
B
Q8Y901
UNP
1
2
EXPRESSION TAG
ASN
-1
4R1H
B
Q8Y901
UNP
2
2
EXPRESSION TAG
ALA
0
4R1H
B
Q8Y901
UNP
3
2
2
anti-parallel
anti-parallel
A
ILE
62
A
ILE
65
A
VAL
65
A
VAL
68
A
GLY
69
A
GLY
72
A
LEU
72
A
LEU
75
B
ILE
62
B
ILE
65
B
VAL
65
B
VAL
68
B
GLY
69
B
GLY
72
B
LEU
72
B
LEU
75
BINDING SITE FOR RESIDUE ACT A 201
Software
3
BINDING SITE FOR RESIDUE ACT B 301
Software
5
A
HIS
18
A
HIS
21
3
1_555
A
HOH
331
E
HOH
3
1_555
A
HOH
343
E
HOH
3
1_555
B
ILE
86
B
ILE
89
5
1_555
B
HOH
419
F
HOH
5
1_555
B
HOH
452
F
HOH
5
1_555
B
HOH
460
F
HOH
5
1_555
B
HOH
461
F
HOH
5
1_555
19
P 21 21 21