0.009466
0.000000
0.001905
-0.000000
0.016858
0.000000
0.000000
-0.000000
0.017463
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
101.380
90.000
105.646
59.318
58.411
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a hypothetical protein (EUBSIR_01394) from Eubacterium siraeum DSM 15702 at 2.56 A resolution
10.2210/pdb4r1k/pdb
pdb_00004r1k
100
1
Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)
PIXEL
2014-05-21
DECTRIS PILATUS 6M
single crystal Si(111) bent
MAD
M
x-ray
1
0.97939
1.0
0.91837
1.0
0.97882
1.0
BL11-1
SSRL
0.97939,0.91837,0.97882
SYNCHROTRON
SSRL BEAMLINE BL11-1
16425.408
Uncharacterized protein
2
man
polymer
18.015
water
4
nat
water
no
yes
GDEGNIKENAVR(MSE)(MSE)ECIVNKDSEKLFDFYNKD(MSE)KDNYKDSSLDEIRQLFEYIDGAITSYNYEGKGGGQ
EAKNDGIICYYSCHPEFDFTTETGQEYTISFSYHYIWNEHPEYEGIN(MSE)IQICKDGNWGEKLIIGRNYYKE
GDEGNIKENAVRMMECIVNKDSEKLFDFYNKDMKDNYKDSSLDEIRQLFEYIDGAITSYNYEGKGGGQEAKNDGIICYYS
CHPEFDFTTETGQEYTISFSYHYIWNEHPEYEGINMIQICKDGNWGEKLIIGRNYYKE
A,B
JCSG-420689
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
DSM 15702
sample
EUBSIR_01394
428128
Eubacterium siraeum
562
Escherichia Coli
PB1
Plasmid
SpeedET
1
2.73
54.96
VAPOR DIFFUSION, SITTING DROP
6.5
0.2M magnesium acetate, 30.0% 2-methyl-2,4-pentanediol, 0.1M sodium cacodylate pH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
software
citation_author
database_2
struct_conn
struct_ref_seq_dif
repository
Initial release
Structure summary
Refinement description
Database references
Database references
Derived calculations
1
0
2014-10-01
1
1
2014-12-24
1
2
2017-11-22
1
3
2018-01-24
1
4
2023-02-01
_software.classification
_software.name
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2014-08-06
REL
REL
HOH
water
THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 30-166 OF THE TARGET SEQUENCE.
HOH
200
2
HOH
HOH
201
A
HOH
202
2
HOH
HOH
202
A
HOH
201
2
HOH
HOH
201
B
HOH
203
2
HOH
HOH
202
B
GLY
0
n
1
GLY
0
A
ASP
30
n
2
ASP
30
A
GLU
31
n
3
GLU
31
A
GLY
32
n
4
GLY
32
A
ASN
33
n
5
ASN
33
A
ILE
34
n
6
ILE
34
A
LYS
35
n
7
LYS
35
A
GLU
36
n
8
GLU
36
A
ASN
37
n
9
ASN
37
A
ALA
38
n
10
ALA
38
A
VAL
39
n
11
VAL
39
A
ARG
40
n
12
ARG
40
A
MSE
41
n
13
MSE
41
A
MSE
42
n
14
MSE
42
A
GLU
43
n
15
GLU
43
A
CYS
44
n
16
CYS
44
A
ILE
45
n
17
ILE
45
A
VAL
46
n
18
VAL
46
A
ASN
47
n
19
ASN
47
A
LYS
48
n
20
LYS
48
A
ASP
49
n
21
ASP
49
A
SER
50
n
22
SER
50
A
GLU
51
n
23
GLU
51
A
LYS
52
n
24
LYS
52
A
LEU
53
n
25
LEU
53
A
PHE
54
n
26
PHE
54
A
ASP
55
n
27
ASP
55
A
PHE
56
n
28
PHE
56
A
TYR
57
n
29
TYR
57
A
ASN
58
n
30
ASN
58
A
LYS
59
n
31
LYS
59
A
ASP
60
n
32
ASP
60
A
MSE
61
n
33
MSE
61
A
LYS
62
n
34
LYS
62
A
ASP
63
n
35
ASP
63
A
ASN
64
n
36
ASN
64
A
TYR
65
n
37
TYR
65
A
LYS
66
n
38
LYS
66
A
ASP
67
n
39
ASP
67
A
SER
68
n
40
SER
68
A
SER
69
n
41
SER
69
A
LEU
70
n
42
LEU
70
A
ASP
71
n
43
ASP
71
A
GLU
72
n
44
GLU
72
A
ILE
73
n
45
ILE
73
A
ARG
74
n
46
ARG
74
A
GLN
75
n
47
GLN
75
A
LEU
76
n
48
LEU
76
A
PHE
77
n
49
PHE
77
A
GLU
78
n
50
GLU
78
A
TYR
79
n
51
TYR
79
A
ILE
80
n
52
ILE
80
A
ASP
81
n
53
ASP
81
A
GLY
82
n
54
GLY
82
A
ALA
83
n
55
ALA
83
A
ILE
84
n
56
ILE
84
A
THR
85
n
57
THR
85
A
SER
86
n
58
SER
86
A
TYR
87
n
59
TYR
87
A
ASN
88
n
60
ASN
88
A
TYR
89
n
61
TYR
89
A
GLU
90
n
62
GLU
90
A
GLY
91
n
63
GLY
91
A
LYS
92
n
64
LYS
92
A
GLY
93
n
65
GLY
93
A
GLY
94
n
66
GLY
94
A
GLY
95
n
67
GLY
95
A
GLN
96
n
68
GLN
96
A
GLU
97
n
69
GLU
97
A
ALA
98
n
70
ALA
98
A
LYS
99
n
71
LYS
99
A
ASN
100
n
72
ASN
100
A
ASP
101
n
73
ASP
101
A
GLY
102
n
74
GLY
102
A
ILE
103
n
75
ILE
103
A
ILE
104
n
76
ILE
104
A
CYS
105
n
77
CYS
105
A
TYR
106
n
78
TYR
106
A
TYR
107
n
79
TYR
107
A
SER
108
n
80
SER
108
A
CYS
109
n
81
CYS
109
A
HIS
110
n
82
HIS
110
A
PRO
111
n
83
PRO
111
A
GLU
112
n
84
GLU
112
A
PHE
113
n
85
PHE
113
A
ASP
114
n
86
ASP
114
A
PHE
115
n
87
PHE
115
A
THR
116
n
88
THR
116
A
THR
117
n
89
THR
117
A
GLU
118
n
90
GLU
118
A
THR
119
n
91
THR
119
A
GLY
120
n
92
GLY
120
A
GLN
121
n
93
GLN
121
A
GLU
122
n
94
GLU
122
A
TYR
123
n
95
TYR
123
A
THR
124
n
96
THR
124
A
ILE
125
n
97
ILE
125
A
SER
126
n
98
SER
126
A
PHE
127
n
99
PHE
127
A
SER
128
n
100
SER
128
A
TYR
129
n
101
TYR
129
A
HIS
130
n
102
HIS
130
A
TYR
131
n
103
TYR
131
A
ILE
132
n
104
ILE
132
A
TRP
133
n
105
TRP
133
A
ASN
134
n
106
ASN
134
A
GLU
135
n
107
GLU
135
A
HIS
136
n
108
HIS
136
A
PRO
137
n
109
PRO
137
A
GLU
138
n
110
GLU
138
A
TYR
139
n
111
TYR
139
A
GLU
140
n
112
GLU
140
A
GLY
141
n
113
GLY
141
A
ILE
142
n
114
ILE
142
A
ASN
143
n
115
ASN
143
A
MSE
144
n
116
MSE
144
A
ILE
145
n
117
ILE
145
A
GLN
146
n
118
GLN
146
A
ILE
147
n
119
ILE
147
A
CYS
148
n
120
CYS
148
A
LYS
149
n
121
LYS
149
A
ASP
150
n
122
ASP
150
A
GLY
151
n
123
GLY
151
A
ASN
152
n
124
ASN
152
A
TRP
153
n
125
TRP
153
A
GLY
154
n
126
GLY
154
A
GLU
155
n
127
GLU
155
A
LYS
156
n
128
LYS
156
A
LEU
157
n
129
LEU
157
A
ILE
158
n
130
ILE
158
A
ILE
159
n
131
ILE
159
A
GLY
160
n
132
GLY
160
A
ARG
161
n
133
ARG
161
A
ASN
162
n
134
ASN
162
A
TYR
163
n
135
TYR
163
A
n
136
164
A
n
137
165
A
n
138
166
A
GLY
0
n
1
GLY
0
B
ASP
30
n
2
ASP
30
B
GLU
31
n
3
GLU
31
B
GLY
32
n
4
GLY
32
B
ASN
33
n
5
ASN
33
B
ILE
34
n
6
ILE
34
B
LYS
35
n
7
LYS
35
B
GLU
36
n
8
GLU
36
B
ASN
37
n
9
ASN
37
B
ALA
38
n
10
ALA
38
B
VAL
39
n
11
VAL
39
B
ARG
40
n
12
ARG
40
B
MSE
41
n
13
MSE
41
B
MSE
42
n
14
MSE
42
B
GLU
43
n
15
GLU
43
B
CYS
44
n
16
CYS
44
B
ILE
45
n
17
ILE
45
B
VAL
46
n
18
VAL
46
B
ASN
47
n
19
ASN
47
B
LYS
48
n
20
LYS
48
B
ASP
49
n
21
ASP
49
B
SER
50
n
22
SER
50
B
GLU
51
n
23
GLU
51
B
LYS
52
n
24
LYS
52
B
LEU
53
n
25
LEU
53
B
PHE
54
n
26
PHE
54
B
ASP
55
n
27
ASP
55
B
PHE
56
n
28
PHE
56
B
TYR
57
n
29
TYR
57
B
ASN
58
n
30
ASN
58
B
LYS
59
n
31
LYS
59
B
ASP
60
n
32
ASP
60
B
MSE
61
n
33
MSE
61
B
LYS
62
n
34
LYS
62
B
ASP
63
n
35
ASP
63
B
ASN
64
n
36
ASN
64
B
TYR
65
n
37
TYR
65
B
LYS
66
n
38
LYS
66
B
ASP
67
n
39
ASP
67
B
SER
68
n
40
SER
68
B
SER
69
n
41
SER
69
B
LEU
70
n
42
LEU
70
B
ASP
71
n
43
ASP
71
B
GLU
72
n
44
GLU
72
B
ILE
73
n
45
ILE
73
B
ARG
74
n
46
ARG
74
B
GLN
75
n
47
GLN
75
B
LEU
76
n
48
LEU
76
B
PHE
77
n
49
PHE
77
B
GLU
78
n
50
GLU
78
B
TYR
79
n
51
TYR
79
B
ILE
80
n
52
ILE
80
B
ASP
81
n
53
ASP
81
B
GLY
82
n
54
GLY
82
B
ALA
83
n
55
ALA
83
B
ILE
84
n
56
ILE
84
B
THR
85
n
57
THR
85
B
SER
86
n
58
SER
86
B
TYR
87
n
59
TYR
87
B
ASN
88
n
60
ASN
88
B
TYR
89
n
61
TYR
89
B
GLU
90
n
62
GLU
90
B
GLY
91
n
63
GLY
91
B
LYS
92
n
64
LYS
92
B
GLY
93
n
65
GLY
93
B
GLY
94
n
66
GLY
94
B
GLY
95
n
67
GLY
95
B
GLN
96
n
68
GLN
96
B
GLU
97
n
69
GLU
97
B
ALA
98
n
70
ALA
98
B
LYS
99
n
71
LYS
99
B
ASN
100
n
72
ASN
100
B
ASP
101
n
73
ASP
101
B
GLY
102
n
74
GLY
102
B
ILE
103
n
75
ILE
103
B
ILE
104
n
76
ILE
104
B
CYS
105
n
77
CYS
105
B
TYR
106
n
78
TYR
106
B
TYR
107
n
79
TYR
107
B
SER
108
n
80
SER
108
B
CYS
109
n
81
CYS
109
B
HIS
110
n
82
HIS
110
B
PRO
111
n
83
PRO
111
B
GLU
112
n
84
GLU
112
B
PHE
113
n
85
PHE
113
B
ASP
114
n
86
ASP
114
B
PHE
115
n
87
PHE
115
B
THR
116
n
88
THR
116
B
THR
117
n
89
THR
117
B
GLU
118
n
90
GLU
118
B
THR
119
n
91
THR
119
B
GLY
120
n
92
GLY
120
B
GLN
121
n
93
GLN
121
B
GLU
122
n
94
GLU
122
B
TYR
123
n
95
TYR
123
B
THR
124
n
96
THR
124
B
ILE
125
n
97
ILE
125
B
SER
126
n
98
SER
126
B
PHE
127
n
99
PHE
127
B
SER
128
n
100
SER
128
B
TYR
129
n
101
TYR
129
B
HIS
130
n
102
HIS
130
B
TYR
131
n
103
TYR
131
B
ILE
132
n
104
ILE
132
B
TRP
133
n
105
TRP
133
B
ASN
134
n
106
ASN
134
B
GLU
135
n
107
GLU
135
B
HIS
136
n
108
HIS
136
B
PRO
137
n
109
PRO
137
B
GLU
138
n
110
GLU
138
B
TYR
139
n
111
TYR
139
B
GLU
140
n
112
GLU
140
B
GLY
141
n
113
GLY
141
B
ILE
142
n
114
ILE
142
B
ASN
143
n
115
ASN
143
B
MSE
144
n
116
MSE
144
B
ILE
145
n
117
ILE
145
B
GLN
146
n
118
GLN
146
B
ILE
147
n
119
ILE
147
B
CYS
148
n
120
CYS
148
B
LYS
149
n
121
LYS
149
B
ASP
150
n
122
ASP
150
B
GLY
151
n
123
GLY
151
B
ASN
152
n
124
ASN
152
B
TRP
153
n
125
TRP
153
B
GLY
154
n
126
GLY
154
B
GLU
155
n
127
GLU
155
B
LYS
156
n
128
LYS
156
B
LEU
157
n
129
LEU
157
B
ILE
158
n
130
ILE
158
B
ILE
159
n
131
ILE
159
B
GLY
160
n
132
GLY
160
B
ARG
161
n
133
ARG
161
B
ASN
162
n
134
ASN
162
B
TYR
163
n
135
TYR
163
B
TYR
164
n
136
TYR
164
B
n
137
165
B
n
138
166
B
2.7026
0.4183
-0.6859
1.3986
-0.4718
0.9596
-0.1395
0.1557
-0.0083
-0.3459
0.1014
0.0618
0.1719
-0.0109
0.0382
0.4134
-0.0121
-0.1095
0.4871
-0.0092
0.1779
refined
13.0220
36.2870
51.1900
X-RAY DIFFRACTION
2.6383
-0.8736
-0.8392
2.3895
0.0736
2.4496
-0.0448
0.1844
-0.0302
-0.0891
0.0959
0.0161
0.0022
-0.0888
-0.0510
0.2828
-0.0233
-0.1076
0.5735
-0.0261
0.1392
refined
36.4900
47.4470
36.9940
X-RAY DIFFRACTION
A
0
A
163
X-RAY DIFFRACTION
1
B
0
B
164
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
41
SELENOMETHIONINE
A
MSE
13
MET
A
MSE
42
SELENOMETHIONINE
A
MSE
14
MET
A
MSE
61
SELENOMETHIONINE
A
MSE
33
MET
A
MSE
144
SELENOMETHIONINE
A
MSE
116
MET
B
MSE
41
SELENOMETHIONINE
B
MSE
13
MET
B
MSE
42
SELENOMETHIONINE
B
MSE
14
MET
B
MSE
61
SELENOMETHIONINE
B
MSE
33
MET
B
MSE
144
SELENOMETHIONINE
B
MSE
116
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASN
88
A
N
ASN
60
A
O
ASP
114
A
O
ASP
86
A
N
PHE
115
A
N
PHE
87
A
O
TYR
123
A
O
TYR
95
A
O
TYR
129
A
O
TYR
101
A
N
CYS
109
A
N
CYS
81
A
O
ILE
103
A
O
ILE
75
A
N
ASN
100
A
N
ASN
72
A
N
ASN
88
A
N
ASN
60
A
O
ASP
114
A
O
ASP
86
A
N
PHE
115
A
N
PHE
87
A
O
TYR
123
A
O
TYR
95
A
N
SER
128
A
N
SER
100
A
O
MSE
144
A
O
MSE
116
A
N
ILE
147
A
N
ILE
119
A
O
LEU
157
A
O
LEU
129
B
N
ASN
88
B
N
ASN
60
B
O
ASP
114
B
O
ASP
86
B
N
PHE
115
B
N
PHE
87
B
O
TYR
123
B
O
TYR
95
B
O
TYR
129
B
O
TYR
101
B
N
CYS
109
B
N
CYS
81
B
O
ILE
103
B
O
ILE
75
B
N
ASN
100
B
N
ASN
72
B
N
ASN
88
B
N
ASN
60
B
O
ASP
114
B
O
ASP
86
B
N
PHE
115
B
N
PHE
87
B
O
TYR
123
B
O
TYR
95
B
N
SER
128
B
N
SER
100
B
O
MSE
144
B
O
MSE
116
B
N
ILE
147
B
N
ILE
119
B
O
LEU
157
B
O
LEU
129
1
A
TYR
164
A
TYR
136
1
Y
1
A
LYS
165
A
LYS
137
1
Y
1
A
GLU
166
A
GLU
138
1
Y
1
B
LYS
165
B
LYS
137
1
Y
1
B
GLU
166
B
GLU
138
1
Y
1
13.92
2.20
98.90
112.82
A
A
A
CG
SE
CE
MSE
MSE
MSE
144
144
144
N
1
A
TRP
133
-154.98
86.33
1
B
LYS
48
60.27
60.45
1
B
TRP
133
-152.14
87.66
96.340
48.3173
30.470
1.6400
-0.0000
4.9500
-5.5500
-0.0000
2.7000
0.9010
0.8720
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION.
0.2989
0.2528
0.2551
2.5600
42.844
543
10762
4.8000
97.7700
1.000
0.750
29.4880
0.2880
RANDOM
1
THROUGHOUT
0.000
MAD
0.7350
0.3570
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD WITH PHASES
BABINET MODEL WITH MASK
2.5600
42.844
4
2236
0
0
2232
0.011
0.019
2285
0.004
0.020
1990
1.483
1.942
3074
1.084
3.000
4610
6.658
5.000
269
40.455
25.630
135
15.548
15.000
373
28.965
15.000
6
0.080
0.200
295
0.006
0.020
2665
0.004
0.020
557
1.664
2.553
1082
1.656
2.550
1081
2.654
4.773
1349
0.3310
0.3580
2.6260
27
793
820
20
98.6800
53.294
2.56
42.844
4R1K
11309
-3.000
0.102
1
10.160
97.500
0.652
2.560
2.650
2.1
4245
1109
1
97.500
0.544
2.650
2.760
2.5
4217
1153
1
97.800
0.352
2.760
2.880
3.6
3713
1047
1
95.700
0.240
2.880
3.030
5.4
4488
1128
1
99.000
0.158
3.030
3.220
7.6
4513
1142
1
99.300
0.115
3.220
3.470
10.2
4444
1142
1
98.300
0.090
3.470
3.820
12.6
4263
1145
1
98.700
0.060
3.820
4.370
16.8
3857
1087
1
94.400
0.053
4.370
5.480
19.8
4446
1143
1
98.600
0.051
5.480
20.4
4287
1172
1
96.100
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
phasing
Eric de La Fortelle
sharp-develop@globalphasing.com
http://www.globalphasing.com/sharp/
SHARP
package
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.7.0032
data reduction
XDS
phasing
SHELXD
Crystal structure of a NTF2-like protein (EUBSIR_01394) from Eubacterium siraeum DSM 15702 at 2.56 A resolution
1
N
N
1
N
N
2
N
N
2
N
N
A
GLY
32
A
GLY
4
HELX_P
A
LYS
48
A
LYS
20
1
1
17
A
ASP
49
A
ASP
21
HELX_P
A
ASP
55
A
ASP
27
1
2
7
A
ASN
58
A
ASN
30
HELX_P
A
TYR
65
A
TYR
37
1
3
8
A
TYR
65
A
TYR
37
HELX_P
A
TYR
79
A
TYR
51
1
4
15
A
HIS
136
A
HIS
108
HELX_P
A
GLU
140
A
GLU
112
5
5
5
B
ASP
30
B
ASP
2
HELX_P
B
LYS
48
B
LYS
20
1
6
19
B
ASP
49
B
ASP
21
HELX_P
B
ASP
55
B
ASP
27
1
7
7
B
ASN
58
B
ASN
30
HELX_P
B
TYR
65
B
TYR
37
1
8
8
B
TYR
65
B
TYR
37
HELX_P
B
TYR
79
B
TYR
51
1
9
15
B
HIS
136
B
HIS
108
HELX_P
B
GLU
140
B
GLU
112
5
10
5
covale
1.331
both
A
ARG
40
A
C
ARG
12
1_555
A
MSE
41
A
N
MSE
13
1_555
covale
1.339
both
A
MSE
41
A
C
MSE
13
1_555
A
MSE
42
A
N
MSE
14
1_555
covale
1.332
both
A
MSE
42
A
C
MSE
14
1_555
A
GLU
43
A
N
GLU
15
1_555
covale
1.333
both
A
ASP
60
A
C
ASP
32
1_555
A
MSE
61
A
N
MSE
33
1_555
covale
1.331
both
A
MSE
61
A
C
MSE
33
1_555
A
LYS
62
A
N
LYS
34
1_555
covale
1.332
both
A
ASN
143
A
C
ASN
115
1_555
A
MSE
144
A
N
MSE
116
1_555
covale
1.335
both
A
MSE
144
A
C
MSE
116
1_555
A
ILE
145
A
N
ILE
117
1_555
covale
1.349
both
B
ARG
40
B
C
ARG
12
1_555
B
MSE
41
B
N
MSE
13
1_555
covale
1.337
both
B
MSE
41
B
C
MSE
13
1_555
B
MSE
42
B
N
MSE
14
1_555
covale
1.337
both
B
MSE
42
B
C
MSE
14
1_555
B
GLU
43
B
N
GLU
15
1_555
covale
1.333
both
B
ASP
60
B
C
ASP
32
1_555
B
MSE
61
B
N
MSE
33
1_555
covale
1.330
both
B
MSE
61
B
C
MSE
33
1_555
B
LYS
62
B
N
LYS
34
1_555
covale
1.329
both
B
ASN
143
B
C
ASN
115
1_555
B
MSE
144
B
N
MSE
116
1_555
covale
1.343
both
B
MSE
144
B
C
MSE
116
1_555
B
ILE
145
B
N
ILE
117
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
NTF2-like fold, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION
B0MNI9_9FIRM
UNP
1
30
B0MNI9
DEGNIKENAVRMMECIVNKDSEKLFDFYNKDMKDNYKDSSLDEIRQLFEYIDGAITSYNYEGKGGGQEAKNDGIICYYSC
HPEFDFTTETGQEYTISFSYHYIWNEHPEYEGINMIQICKDGNWGEKLIIGRNYYKE
30
166
4R1K
30
166
B0MNI9
A
1
2
138
30
166
4R1K
30
166
B0MNI9
B
1
2
138
1
expression tag
GLY
0
4R1K
A
B0MNI9
UNP
1
2
expression tag
GLY
0
4R1K
B
B0MNI9
UNP
1
5
5
5
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
84
A
ILE
56
A
TYR
89
A
TYR
61
A
GLU
112
A
GLU
84
A
THR
117
A
THR
89
A
GLU
122
A
GLU
94
A
TRP
133
A
TRP
105
A
ILE
103
A
ILE
75
A
CYS
109
A
CYS
81
A
GLU
97
A
GLU
69
A
ASN
100
A
ASN
72
A
ILE
84
A
ILE
56
A
TYR
89
A
TYR
61
A
GLU
112
A
GLU
84
A
THR
117
A
THR
89
A
GLU
122
A
GLU
94
A
TRP
133
A
TRP
105
A
GLY
141
A
GLY
113
A
LYS
149
A
LYS
121
A
ASN
152
A
ASN
124
A
GLY
160
A
GLY
132
B
ILE
84
B
ILE
56
B
TYR
89
B
TYR
61
B
GLU
112
B
GLU
84
B
THR
117
B
THR
89
B
GLU
122
B
GLU
94
B
TRP
133
B
TRP
105
B
ILE
103
B
ILE
75
B
CYS
109
B
CYS
81
B
GLU
97
B
GLU
69
B
ASN
100
B
ASN
72
B
ILE
84
B
ILE
56
B
TYR
89
B
TYR
61
B
GLU
112
B
GLU
84
B
THR
117
B
THR
89
B
GLU
122
B
GLU
94
B
TRP
133
B
TRP
105
B
GLY
141
B
GLY
113
B
LYS
149
B
LYS
121
B
ASN
152
B
ASN
124
B
GLY
160
B
GLY
132
5
C 1 2 1