0.014462
0.000000
0.000838
0.000000
0.015021
0.000000
0.000000
0.000000
0.027768
0.00000
0.00000
0.00000
Hashimoto, H.
Olanrewaju, Y.O.
Zheng, Y.
Wilson, G.G.
Zhang, X.
Cheng, X.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
93.32
90.00
69.148
66.575
36.073
C10 H16 N3 O7 P
321.224
n
5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
N
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
R
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
S
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
O
N
126
N
P
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
O
N
133
S
C
N
134
N
O
N
135
N
C
N
136
R
C
Y
137
N
N
Y
138
N
C
Y
139
N
N
Y
140
N
C
Y
141
N
C
N
142
N
N
Y
143
N
N
Y
144
N
C
Y
145
N
N
Y
146
N
C
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
O
N
162
N
P
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
C
N
167
R
C
N
168
N
O
N
169
S
C
N
170
N
O
N
171
N
C
N
172
R
C
N
173
N
N
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
C
N
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
Y
207
N
N
Y
208
N
C
Y
209
N
N
Y
210
N
C
N
211
N
C
N
212
N
O
N
213
N
N
N
214
N
C
N
215
N
N
N
216
N
N
Y
217
N
C
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
O
N
233
N
P
N
234
N
O
N
235
N
O
N
236
N
O
N
237
N
C
N
238
R
C
N
239
N
O
N
240
S
C
N
241
N
O
N
242
N
C
N
243
R
C
N
244
N
N
N
245
N
C
N
246
N
O
N
247
N
N
N
248
N
C
N
249
N
O
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
N
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
N
C
N
319
N
C
N
320
N
O
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
N
Y
334
N
C
Y
335
N
C
Y
336
N
N
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
C
N
381
N
N
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
N
403
N
C
N
404
N
S
N
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
N
446
N
C
N
447
N
C
N
448
N
O
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
N
N
459
S
C
N
460
N
C
N
461
N
O
N
462
N
C
N
463
N
O
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
N
N
473
S
C
N
474
N
C
N
475
N
O
N
476
R
C
N
477
N
O
N
478
N
C
N
479
N
O
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
N
N
490
S
C
N
491
N
C
N
492
N
O
N
493
N
C
Y
494
N
C
Y
495
N
C
Y
496
N
C
Y
497
N
N
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
Y
502
N
C
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
N
N
517
S
C
N
518
N
C
N
519
N
O
N
520
N
C
Y
521
N
C
Y
522
N
C
Y
523
N
C
Y
524
N
C
Y
525
N
C
Y
526
N
C
N
527
N
O
N
528
N
O
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
N
N
541
S
C
N
542
N
C
N
543
N
O
N
544
N
C
N
545
N
C
N
546
N
C
N
547
N
O
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
Y
144
N
sing
Y
145
N
sing
Y
146
N
doub
N
147
N
sing
Y
148
N
sing
Y
149
N
sing
Y
150
N
doub
N
151
N
sing
Y
152
N
doub
N
153
N
sing
N
154
N
sing
Y
155
N
sing
Y
156
N
doub
N
157
N
sing
Y
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
Y
217
N
sing
Y
218
N
sing
Y
219
N
doub
N
220
N
sing
Y
221
N
sing
N
222
N
sing
Y
223
N
doub
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
Y
336
N
sing
Y
337
N
doub
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
Y
423
N
doub
Y
424
N
sing
Y
425
N
sing
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
doub
N
430
N
sing
Y
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
doub
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
doub
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
doub
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
doub
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
Y
492
N
doub
Y
493
N
sing
Y
494
N
sing
N
495
N
sing
Y
496
N
doub
Y
497
N
sing
Y
498
N
sing
N
499
N
sing
Y
500
N
sing
Y
501
N
doub
N
502
N
sing
Y
503
N
doub
N
504
N
sing
Y
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
doub
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
Y
520
N
doub
Y
521
N
sing
Y
522
N
sing
N
523
N
sing
Y
524
N
doub
N
525
N
sing
Y
526
N
doub
N
527
N
sing
Y
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
doub
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
US
Genes Dev.
GEDEEP
2056
0890-9369
28
2304
2313
10.1101/gad.250746.114
25258363
Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
2014
10.2210/pdb4r2s/pdb
pdb_00004r2s
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2014-03-09
MARMOSAIC 225 mm CCD
Si (111)
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
22-BM
APS
1.0000
SYNCHROTRON
APS BEAMLINE 22-BM
11251.867
Wilms tumor protein, isoform 4/CRA_a
Zinc Finger 2-4
Q369P
1
man
polymer
3444.260
DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(5CM)P*GP*T)-3')
1
syn
polymer
3293.178
DNA (5'-D(*TP*AP*(5CM)P*GP*CP*CP*CP*AP*CP*GP*C)-3')
1
syn
polymer
65.409
ZINC ION
3
syn
non-polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
18.015
water
25
nat
water
WT33
no
no
GPLGSEKPYQCDFKDCERRFSRSDPLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFAR
SDELVRHHNMHQR
GPLGSEKPYQCDFKDCERRFSRSDPLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFAR
SDELVRHHNMHQR
A
polypeptide(L)
no
yes
(DA)(DG)(DC)(DG)(DT)(DG)(DG)(DG)(5CM)(DG)(DT)
AGCGTGGGCGT
B
polydeoxyribonucleotide
no
yes
(DT)(DA)(5CM)(DG)(DC)(DC)(DC)(DA)(DC)(DG)(DC)
TACGCCCACGC
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
WT1
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3) codon plus
plasmid
pGEX6p-1, pXC1303
1
2.30
46.61
VAPOR DIFFUSION, SITTING DROP
7.0
12% (w/v) PEG 3350, 0.1 M Ammonium Citrate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
-7.625
1
19
B
2
C
11
0.883
B_DG2:DC11_C
1
-3.384
-0.179
0.208
-0.174
6.511
1
19
B
3
C
10
2.424
B_DC3:DG10_C
2
1.071
0.376
-0.504
-0.152
-2.758
1
19
B
4
C
9
-1.191
B_DG4:DC9_C
3
-10.891
-0.280
-0.238
-0.204
7.354
1
20
B
5
C
8
7.900
B_DT5:DA8_C
4
-5.449
-0.140
-0.178
-0.118
-15.567
1
19
B
6
C
7
-1.184
B_DG6:DC7_C
5
-20.726
-0.761
-0.188
-0.133
-4.094
1
19
B
7
C
6
-8.051
B_DG7:DC6_C
6
-2.726
0.168
-0.380
-0.285
-1.216
1
19
B
8
C
5
-2.962
B_DG8:DC5_C
7
-21.827
-0.063
0.117
0.099
-0.201
1
19
B
9
C
4
6.405
B_5CM9:DG4_C
8
-11.586
0.102
0.135
-0.034
6.746
1
19
B
10
C
3
-2.026
B_DG10:5CM3_C
9
-5.611
-0.211
0.259
-0.093
22.308
1
20
B
11
C
2
6.441
B_DT11:DA2_C
10
-10.831
0.166
-0.372
0.026
2.962
26.731
B
B
2
3
0.734
C
C
11
10
2.987
0.337
0.212
-0.340
BB_DG2DC3:DG10DC11_CC
1
5.593
-12.185
26.147
-0.816
0.880
3.415
34.907
B
B
3
4
20.773
C
C
10
9
3.446
12.156
-1.328
0.019
BB_DC3DG4:DC9DG10_CC
2
-5.808
9.925
32.277
-1.981
1.253
3.144
29.181
B
B
4
5
9.265
C
C
9
8
3.338
4.641
0.771
-0.364
BB_DG4DT5:DA8DC9_CC
3
-3.041
6.071
28.660
-1.733
-2.192
4.183
32.915
B
B
5
6
-3.320
C
C
8
7
4.039
-1.874
-1.121
-0.551
BB_DT5DG6:DC7DA8_CC
4
-4.879
8.646
32.509
-0.568
0.926
2.820
37.703
B
B
6
7
14.471
C
C
7
6
3.138
9.262
-0.933
-0.884
BB_DG6DG7:DC6DC7_CC
5
0.757
-1.183
36.580
-2.478
1.534
3.004
35.929
B
B
7
8
12.371
C
C
6
5
3.319
7.564
0.023
-1.099
BB_DG7DG8:DC5DC6_CC
6
-3.832
6.268
34.947
-2.842
-0.574
3.348
29.803
B
B
8
9
-9.513
C
C
5
4
3.259
-4.872
0.736
-0.798
BB_DG85CM9:DG4DC5_CC
7
0.130
-0.253
29.411
-0.518
-1.403
3.341
31.289
B
B
9
10
3.574
C
C
4
3
3.307
1.925
-0.900
-0.103
BB_5CM9DG10:5CM3DG4_CC
8
-1.839
3.414
31.179
-0.561
1.316
2.921
31.704
B
B
10
11
13.090
C
C
3
2
3.040
7.086
0.924
-0.499
BB_DG10DT11:DA25CM3_CC
9
2.565
-4.738
30.817
-2.120
-1.254
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2014-10-08
1
1
2014-11-19
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2014-08-12
REL
REL
ZN
ZINC ION
EDO
1,2-ETHANEDIOL
HOH
water
chemical synthesis
32630
synthetic construct
sample
chemical synthesis
32630
synthetic construct
sample
4R2E
PDB ENTRY 4R2E
PDB
experimental model
ZN
1
4
ZN
ZN
501
A
ZN
2
4
ZN
ZN
502
A
ZN
3
4
ZN
ZN
503
A
EDO
1
5
EDO
EDO
504
A
EDO
2
5
EDO
EDO
505
A
HOH
1
6
HOH
HOH
601
A
HOH
2
6
HOH
HOH
602
A
HOH
4
6
HOH
HOH
603
A
HOH
5
6
HOH
HOH
604
A
HOH
6
6
HOH
HOH
605
A
HOH
10
6
HOH
HOH
606
A
HOH
11
6
HOH
HOH
607
A
HOH
12
6
HOH
HOH
608
A
HOH
14
6
HOH
HOH
609
A
HOH
15
6
HOH
HOH
610
A
HOH
20
6
HOH
HOH
611
A
HOH
23
6
HOH
HOH
612
A
HOH
26
6
HOH
HOH
613
A
HOH
27
6
HOH
HOH
614
A
HOH
28
6
HOH
HOH
615
A
HOH
29
6
HOH
HOH
616
A
HOH
3
6
HOH
HOH
101
B
HOH
8
6
HOH
HOH
102
B
HOH
13
6
HOH
HOH
103
B
HOH
30
6
HOH
HOH
104
B
HOH
31
6
HOH
HOH
105
B
HOH
7
6
HOH
HOH
101
C
HOH
18
6
HOH
HOH
102
C
HOH
25
6
HOH
HOH
103
C
HOH
32
6
HOH
HOH
104
C
n
1
345
A
n
2
346
A
n
3
347
A
n
4
348
A
SER
349
n
5
SER
349
A
GLU
350
n
6
GLU
350
A
LYS
351
n
7
LYS
351
A
PRO
352
n
8
PRO
352
A
TYR
353
n
9
TYR
353
A
GLN
354
n
10
GLN
354
A
CYS
355
n
11
CYS
355
A
ASP
356
n
12
ASP
356
A
PHE
357
n
13
PHE
357
A
LYS
358
n
14
LYS
358
A
ASP
359
n
15
ASP
359
A
CYS
360
n
16
CYS
360
A
GLU
361
n
17
GLU
361
A
ARG
362
n
18
ARG
362
A
ARG
363
n
19
ARG
363
A
PHE
364
n
20
PHE
364
A
SER
365
n
21
SER
365
A
ARG
366
n
22
ARG
366
A
SER
367
n
23
SER
367
A
ASP
368
n
24
ASP
368
A
PRO
369
n
25
PRO
369
A
LEU
370
n
26
LEU
370
A
LYS
371
n
27
LYS
371
A
ARG
372
n
28
ARG
372
A
HIS
373
n
29
HIS
373
A
GLN
374
n
30
GLN
374
A
ARG
375
n
31
ARG
375
A
ARG
376
n
32
ARG
376
A
HIS
377
n
33
HIS
377
A
THR
378
n
34
THR
378
A
GLY
379
n
35
GLY
379
A
VAL
380
n
36
VAL
380
A
LYS
381
n
37
LYS
381
A
PRO
382
n
38
PRO
382
A
PHE
383
n
39
PHE
383
A
GLN
384
n
40
GLN
384
A
CYS
385
n
41
CYS
385
A
LYS
386
n
42
LYS
386
A
THR
387
n
43
THR
387
A
CYS
388
n
44
CYS
388
A
GLN
389
n
45
GLN
389
A
ARG
390
n
46
ARG
390
A
LYS
391
n
47
LYS
391
A
PHE
392
n
48
PHE
392
A
SER
393
n
49
SER
393
A
ARG
394
n
50
ARG
394
A
SER
395
n
51
SER
395
A
ASP
396
n
52
ASP
396
A
HIS
397
n
53
HIS
397
A
LEU
398
n
54
LEU
398
A
LYS
399
n
55
LYS
399
A
THR
400
n
56
THR
400
A
HIS
401
n
57
HIS
401
A
THR
402
n
58
THR
402
A
ARG
403
n
59
ARG
403
A
THR
404
n
60
THR
404
A
HIS
405
n
61
HIS
405
A
THR
406
n
62
THR
406
A
GLY
407
n
63
GLY
407
A
GLU
408
n
64
GLU
408
A
LYS
409
n
65
LYS
409
A
PRO
410
n
66
PRO
410
A
PHE
411
n
67
PHE
411
A
SER
412
n
68
SER
412
A
CYS
413
n
69
CYS
413
A
ARG
414
n
70
ARG
414
A
TRP
415
n
71
TRP
415
A
PRO
416
n
72
PRO
416
A
SER
417
n
73
SER
417
A
CYS
418
n
74
CYS
418
A
GLN
419
n
75
GLN
419
A
LYS
420
n
76
LYS
420
A
LYS
421
n
77
LYS
421
A
PHE
422
n
78
PHE
422
A
ALA
423
n
79
ALA
423
A
ARG
424
n
80
ARG
424
A
SER
425
n
81
SER
425
A
ASP
426
n
82
ASP
426
A
GLU
427
n
83
GLU
427
A
LEU
428
n
84
LEU
428
A
VAL
429
n
85
VAL
429
A
ARG
430
n
86
ARG
430
A
HIS
431
n
87
HIS
431
A
HIS
432
n
88
HIS
432
A
ASN
433
n
89
ASN
433
A
MET
434
n
90
MET
434
A
HIS
435
n
91
HIS
435
A
GLN
436
n
92
GLN
436
A
ARG
437
n
93
ARG
437
A
DA
1
n
1
DA
1
B
DG
2
n
2
DG
2
B
DC
3
n
3
DC
3
B
DG
4
n
4
DG
4
B
DT
5
n
5
DT
5
B
DG
6
n
6
DG
6
B
DG
7
n
7
DG
7
B
DG
8
n
8
DG
8
B
5CM
9
n
9
5CM
9
B
DG
10
n
10
DG
10
B
DT
11
n
11
DT
11
B
DT
1
n
1
DT
1
C
DA
2
n
2
DA
2
C
5CM
3
n
3
5CM
3
C
DG
4
n
4
DG
4
C
DC
5
n
5
DC
5
C
DC
6
n
6
DC
6
C
DC
7
n
7
DC
7
C
DA
8
n
8
DA
8
C
DC
9
n
9
DC
9
C
DG
10
n
10
DG
10
C
DC
11
n
11
DC
11
C
author_and_software_defined_assembly
PISA
3
trimeric
5640
2
7820
A
CYS
355
A
SG
CYS
11
1_555
A
ZN
501
D
ZN
ZN
1_555
A
CYS
360
A
SG
CYS
16
1_555
113.7
A
CYS
355
A
SG
CYS
11
1_555
A
ZN
501
D
ZN
ZN
1_555
A
HIS
373
A
NE2
HIS
29
1_555
110.4
A
CYS
360
A
SG
CYS
16
1_555
A
ZN
501
D
ZN
ZN
1_555
A
HIS
373
A
NE2
HIS
29
1_555
110.6
A
CYS
355
A
SG
CYS
11
1_555
A
ZN
501
D
ZN
ZN
1_555
A
HIS
377
A
NE2
HIS
33
1_555
108.7
A
CYS
360
A
SG
CYS
16
1_555
A
ZN
501
D
ZN
ZN
1_555
A
HIS
377
A
NE2
HIS
33
1_555
107.9
A
HIS
373
A
NE2
HIS
29
1_555
A
ZN
501
D
ZN
ZN
1_555
A
HIS
377
A
NE2
HIS
33
1_555
105.3
A
CYS
385
A
SG
CYS
41
1_555
A
ZN
502
E
ZN
ZN
1_555
A
CYS
388
A
SG
CYS
44
1_555
116.4
A
CYS
385
A
SG
CYS
41
1_555
A
ZN
502
E
ZN
ZN
1_555
A
HIS
401
A
NE2
HIS
57
1_555
111.1
A
CYS
388
A
SG
CYS
44
1_555
A
ZN
502
E
ZN
ZN
1_555
A
HIS
401
A
NE2
HIS
57
1_555
97.7
A
CYS
385
A
SG
CYS
41
1_555
A
ZN
502
E
ZN
ZN
1_555
A
HIS
405
A
NE2
HIS
61
1_555
117.4
A
CYS
388
A
SG
CYS
44
1_555
A
ZN
502
E
ZN
ZN
1_555
A
HIS
405
A
NE2
HIS
61
1_555
112.9
A
HIS
401
A
NE2
HIS
57
1_555
A
ZN
502
E
ZN
ZN
1_555
A
HIS
405
A
NE2
HIS
61
1_555
97.6
A
CYS
413
A
SG
CYS
69
1_555
A
ZN
503
F
ZN
ZN
1_555
A
CYS
418
A
SG
CYS
74
1_555
105.3
A
CYS
413
A
SG
CYS
69
1_555
A
ZN
503
F
ZN
ZN
1_555
A
HIS
431
A
NE2
HIS
87
1_555
100.5
A
CYS
418
A
SG
CYS
74
1_555
A
ZN
503
F
ZN
ZN
1_555
A
HIS
431
A
NE2
HIS
87
1_555
116.4
A
CYS
413
A
SG
CYS
69
1_555
A
ZN
503
F
ZN
ZN
1_555
A
HIS
435
A
NE2
HIS
91
1_555
114.5
A
CYS
418
A
SG
CYS
74
1_555
A
ZN
503
F
ZN
ZN
1_555
A
HIS
435
A
NE2
HIS
91
1_555
130.2
A
HIS
431
A
NE2
HIS
87
1_555
A
ZN
503
F
ZN
ZN
1_555
A
HIS
435
A
NE2
HIS
91
1_555
85.1
B
5CM
9
B
5CM
9
DC
C
5CM
3
C
5CM
3
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
353
A
N
TYR
9
A
O
PHE
364
A
O
PHE
20
A
N
PHE
383
A
N
PHE
39
A
O
PHE
392
A
O
PHE
48
A
N
PHE
411
A
N
PHE
67
A
O
PHE
422
A
O
PHE
78
1
A
OG
SER
349
A
OG
SER
5
1
Y
1
A
CG
GLU
350
A
CG
GLU
6
1
Y
1
A
CD
GLU
350
A
CD
GLU
6
1
Y
1
A
OE1
GLU
350
A
OE1
GLU
6
1
Y
1
A
OE2
GLU
350
A
OE2
GLU
6
1
Y
1
A
CG
GLN
354
A
CG
GLN
10
1
Y
1
A
CD
GLN
354
A
CD
GLN
10
1
Y
1
A
OE1
GLN
354
A
OE1
GLN
10
1
Y
1
A
NE2
GLN
354
A
NE2
GLN
10
1
Y
1
A
CG
LYS
358
A
CG
LYS
14
1
Y
1
A
CD
LYS
358
A
CD
LYS
14
1
Y
1
A
CE
LYS
358
A
CE
LYS
14
1
Y
1
A
NZ
LYS
358
A
NZ
LYS
14
1
Y
1
A
CG
ASP
359
A
CG
ASP
15
1
Y
1
A
OD1
ASP
359
A
OD1
ASP
15
1
Y
1
A
OD2
ASP
359
A
OD2
ASP
15
1
Y
1
A
CG
GLU
361
A
CG
GLU
17
1
Y
1
A
CD
GLU
361
A
CD
GLU
17
1
Y
1
A
OE1
GLU
361
A
OE1
GLU
17
1
Y
1
A
OE2
GLU
361
A
OE2
GLU
17
1
Y
1
A
CG
LYS
371
A
CG
LYS
27
1
Y
1
A
CD
LYS
371
A
CD
LYS
27
1
Y
1
A
CE
LYS
371
A
CE
LYS
27
1
Y
1
A
NZ
LYS
371
A
NZ
LYS
27
1
Y
1
A
CG
LYS
386
A
CG
LYS
42
1
Y
1
A
CD
LYS
386
A
CD
LYS
42
1
Y
1
A
CE
LYS
386
A
CE
LYS
42
1
Y
1
A
NZ
LYS
386
A
NZ
LYS
42
1
Y
1
A
CE
LYS
399
A
CE
LYS
55
1
Y
1
A
NZ
LYS
399
A
NZ
LYS
55
1
Y
1
A
CG
GLU
408
A
CG
GLU
64
1
Y
1
A
CD
GLU
408
A
CD
GLU
64
1
Y
1
A
OE1
GLU
408
A
OE1
GLU
64
1
Y
1
A
OE2
GLU
408
A
OE2
GLU
64
1
Y
1
A
CG
GLN
419
A
CG
GLN
75
1
Y
1
A
CD
GLN
419
A
CD
GLN
75
1
Y
1
A
OE1
GLN
419
A
OE1
GLN
75
1
Y
1
A
NE2
GLN
419
A
NE2
GLN
75
1
Y
1
A
CE
LYS
420
A
CE
LYS
76
1
Y
1
A
NZ
LYS
420
A
NZ
LYS
76
1
Y
1
A
CE
LYS
421
A
CE
LYS
77
1
Y
1
A
NZ
LYS
421
A
NZ
LYS
77
1
Y
1
A
CG
GLN
436
A
CG
GLN
92
1
Y
1
A
CD
GLN
436
A
CD
GLN
92
1
Y
1
A
OE1
GLN
436
A
OE1
GLN
92
1
Y
1
A
NE2
GLN
436
A
NE2
GLN
92
1
Y
1
A
CG
ARG
437
A
CG
ARG
93
1
Y
1
A
CD
ARG
437
A
CD
ARG
93
1
Y
1
A
NE
ARG
437
A
NE
ARG
93
1
Y
1
A
CZ
ARG
437
A
CZ
ARG
93
1
Y
1
A
NH1
ARG
437
A
NH1
ARG
93
1
Y
1
A
NH2
ARG
437
A
NH2
ARG
93
1
Y
1
A
GLY
345
A
GLY
1
1
Y
1
A
PRO
346
A
PRO
2
1
Y
1
A
LEU
347
A
LEU
3
1
Y
1
A
GLY
348
A
GLY
4
1
Y
0.2684
0.2076
0.2104
0.2104
2.489
29.361
267
5644
5644
4.73
97.31
0.29
RANDOM
1
1.36
MOLECULAR REPLACEMENT
29.62
0.90
1.11
PDB ENTRY 4R2E
ML
FLAT BULK SOLVENT MODEL
2.489
29.361
25
1194
11
447
711
0.004
1297
0.709
1832
23.920
509
0.029
190
0.002
154
0.3234
0.2526
3.1349
131
2635
2873
96.00
0.2451
0.1901
29.3634
136
2742
2766
98.00
38.88
2.489
29.4
4R2S
5690
5690
0
-3
0.087
1
19.9
7.3
98.5
0.250
2.49
2.58
6.6
545
1
6.6
92.1
data collection
HKL-2000
model building
PHENIX
refinement
PHENIX
(phenix.refine: 1.8.4_1496)
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHENIX
Wilms Tumor Protein (WT1) Q369P zinc fingers in complex with methylated DNA
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
A
SER
367
A
SER
23
HELX_P
A
GLN
374
A
GLN
30
1
1
8
A
GLN
374
A
GLN
30
HELX_P
A
GLY
379
A
GLY
35
1
2
6
A
ARG
394
A
ARG
50
HELX_P
A
GLY
407
A
GLY
63
1
3
14
A
ARG
424
A
ARG
80
HELX_P
A
ARG
437
A
ARG
93
1
4
14
covale
1.609
both
B
DG
8
B
O3'
DG
8
1_555
B
5CM
9
B
P
5CM
9
1_555
covale
1.607
both
B
5CM
9
B
O3'
5CM
9
1_555
B
DG
10
B
P
DG
10
1_555
covale
1.605
both
C
DA
2
C
O3'
DA
2
1_555
C
5CM
3
C
P
5CM
3
1_555
covale
1.605
both
A
C
5CM
3
C
O3'
5CM
3
1_555
C
DG
4
C
P
DG
4
1_555
covale
1.606
both
B
C
5CM
3
C
O3'
5CM
3
1_555
C
DG
4
C
P
DG
4
1_555
metalc
2.341
A
CYS
355
A
SG
CYS
11
1_555
A
ZN
501
D
ZN
ZN
1_555
metalc
2.283
A
CYS
360
A
SG
CYS
16
1_555
A
ZN
501
D
ZN
ZN
1_555
metalc
2.028
A
HIS
373
A
NE2
HIS
29
1_555
A
ZN
501
D
ZN
ZN
1_555
metalc
2.030
A
HIS
377
A
NE2
HIS
33
1_555
A
ZN
501
D
ZN
ZN
1_555
metalc
2.254
A
CYS
385
A
SG
CYS
41
1_555
A
ZN
502
E
ZN
ZN
1_555
metalc
2.277
A
CYS
388
A
SG
CYS
44
1_555
A
ZN
502
E
ZN
ZN
1_555
metalc
2.033
A
HIS
401
A
NE2
HIS
57
1_555
A
ZN
502
E
ZN
ZN
1_555
metalc
2.026
A
HIS
405
A
NE2
HIS
61
1_555
A
ZN
502
E
ZN
ZN
1_555
metalc
2.311
A
CYS
413
A
SG
CYS
69
1_555
A
ZN
503
F
ZN
ZN
1_555
metalc
2.328
A
CYS
418
A
SG
CYS
74
1_555
A
ZN
503
F
ZN
ZN
1_555
metalc
2.034
A
HIS
431
A
NE2
HIS
87
1_555
A
ZN
503
F
ZN
ZN
1_555
metalc
2.043
A
HIS
435
A
NE2
HIS
91
1_555
A
ZN
503
F
ZN
ZN
1_555
hydrog
WATSON-CRICK
B
DG
2
B
N1
DG
2
1_555
C
DC
11
C
N3
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
2
B
N2
DG
2
1_555
C
DC
11
C
O2
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
2
B
O6
DG
2
1_555
C
DC
11
C
N4
DC
11
1_555
hydrog
WATSON-CRICK
B
DC
3
B
N3
DC
3
1_555
C
DG
10
C
N1
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
3
B
N4
DC
3
1_555
C
DG
10
C
O6
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
3
B
O2
DC
3
1_555
C
DG
10
C
N2
DG
10
1_555
hydrog
WATSON-CRICK
B
DG
4
B
N1
DG
4
1_555
C
DC
9
C
N3
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
4
B
N2
DG
4
1_555
C
DC
9
C
O2
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
4
B
O6
DG
4
1_555
C
DC
9
C
N4
DC
9
1_555
hydrog
WATSON-CRICK
B
DT
5
B
N3
DT
5
1_555
C
DA
8
C
N1
DA
8
1_555
hydrog
WATSON-CRICK
B
DT
5
B
O4
DT
5
1_555
C
DA
8
C
N6
DA
8
1_555
hydrog
WATSON-CRICK
B
DG
6
B
N1
DG
6
1_555
C
DC
7
C
N3
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
6
B
N2
DG
6
1_555
C
DC
7
C
O2
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
6
B
O6
DG
6
1_555
C
DC
7
C
N4
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
7
B
N1
DG
7
1_555
C
DC
6
C
N3
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
7
B
N2
DG
7
1_555
C
DC
6
C
O2
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
7
B
O6
DG
7
1_555
C
DC
6
C
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
B
DG
8
B
N1
DG
8
1_555
C
DC
5
C
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
B
DG
8
B
N2
DG
8
1_555
C
DC
5
C
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
B
DG
8
B
O6
DG
8
1_555
C
DC
5
C
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
B
5CM
9
B
N3
5CM
9
1_555
C
DG
4
C
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
B
5CM
9
B
N4
5CM
9
1_555
C
DG
4
C
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
B
5CM
9
B
O2
5CM
9
1_555
C
DG
4
C
N2
DG
4
1_555
hydrog
WATSON-CRICK
B
DG
10
B
N1
DG
10
1_555
C
5CM
3
C
N3
5CM
3
1_555
hydrog
WATSON-CRICK
B
DG
10
B
N2
DG
10
1_555
C
5CM
3
C
O2
5CM
3
1_555
hydrog
WATSON-CRICK
B
DG
10
B
O6
DG
10
1_555
C
5CM
3
C
N4
5CM
3
1_555
hydrog
WATSON-CRICK
B
DT
11
B
N3
DT
11
1_555
C
DA
2
C
N1
DA
2
1_555
hydrog
WATSON-CRICK
B
DT
11
B
O4
DT
11
1_555
C
DA
2
C
N6
DA
2
1_555
DNA Binding Protein/DNA
Zinc finger, Transcription, DNA Binding Protein-DNA complex
WT1_HUMAN
UNP
1
350
P19544
EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV
RHHNMHQR
4R2S
PDB
2
4R2S
4R2S
PDB
3
4R2S
350
437
4R2S
350
437
P19544
A
1
6
93
1
11
4R2S
1
11
4R2S
B
2
1
11
1
11
4R2S
1
11
4R2S
C
3
1
11
1
expression tag
GLY
345
4R2S
A
P19544
UNP
1
1
expression tag
PRO
346
4R2S
A
P19544
UNP
2
1
expression tag
LEU
347
4R2S
A
P19544
UNP
3
1
expression tag
GLY
348
4R2S
A
P19544
UNP
4
1
expression tag
SER
349
4R2S
A
P19544
UNP
5
1
GLN
engineered mutation
PRO
369
4R2S
A
P19544
UNP
369
25
2
2
2
anti-parallel
anti-parallel
anti-parallel
A
TYR
353
A
TYR
9
A
GLN
354
A
GLN
10
A
ARG
363
A
ARG
19
A
PHE
364
A
PHE
20
A
PHE
383
A
PHE
39
A
GLN
384
A
GLN
40
A
LYS
391
A
LYS
47
A
PHE
392
A
PHE
48
A
PHE
411
A
PHE
67
A
SER
412
A
SER
68
A
LYS
421
A
LYS
77
A
PHE
422
A
PHE
78
BINDING SITE FOR RESIDUE ZN A 501
A
ZN
501
Software
4
BINDING SITE FOR RESIDUE ZN A 502
A
ZN
502
Software
4
BINDING SITE FOR RESIDUE ZN A 503
A
ZN
503
Software
4
BINDING SITE FOR RESIDUE EDO A 504
A
EDO
504
Software
5
BINDING SITE FOR RESIDUE EDO A 505
A
EDO
505
Software
3
A
CYS
355
A
CYS
11
4
1_555
A
CYS
360
A
CYS
16
4
1_555
A
HIS
373
A
HIS
29
4
1_555
A
HIS
377
A
HIS
33
4
1_555
A
CYS
385
A
CYS
41
4
1_555
A
CYS
388
A
CYS
44
4
1_555
A
HIS
401
A
HIS
57
4
1_555
A
HIS
405
A
HIS
61
4
1_555
A
CYS
413
A
CYS
69
4
1_555
A
CYS
418
A
CYS
74
4
1_555
A
HIS
431
A
HIS
87
4
1_555
A
HIS
435
A
HIS
91
4
1_555
A
ARG
372
A
ARG
28
5
1_555
A
ARG
394
A
ARG
50
5
1_555
A
SER
395
A
SER
51
5
1_555
A
ASP
396
A
ASP
52
5
1_555
C
DG
4
C
DG
4
5
1_555
A
LYS
381
A
LYS
37
3
1_555
A
ARG
390
A
ARG
46
3
1_555
B
DT
5
B
DT
5
3
1_555
5
C 1 2 1