0.027989 0.000000 0.006752 -0.000000 0.025158 0.000000 0.000000 -0.000000 0.018292 0.000000 0.000000 0.000000 Tempel, W. Xu, C. Liu, K. Li, Y. Bountra, C. Arrowsmith, C.H. Edwards, A.M. Min, J. Structural Genomics Consortium (SGC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.000 103.560 90.000 35.728 39.748 56.238 C11 H16 N5 O7 P 361.248 n N6-METHYLADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UNKNOWN ATOM OR ION non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking Y 1 N C Y 2 N C Y 3 N C N 4 N O N 5 N O Y 6 N N Y 7 N N Y 8 N N Y 9 N C N 10 N N N 11 N C Y 12 N N Y 13 N C N 14 N O N 15 N C N 16 R C N 17 N O N 18 R C N 19 R C N 20 N O N 21 S C N 22 N O N 23 N P N 24 N O N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N O N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N N N 55 S C N 56 N C N 57 N O N 58 N C N 59 N C N 60 N C N 61 N N N 62 N C N 63 N N N 64 N N N 65 N O N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 S C N 83 N C N 84 N O N 85 N C N 86 N C N 87 N O N 88 N N N 89 N O N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 S C N 100 N C N 101 N O N 102 N C N 103 N C N 104 N O N 105 N O N 106 N O N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N O N 115 N P N 116 N O N 117 N O N 118 N O N 119 N C N 120 R C N 121 N O N 122 S C N 123 N O N 124 R C N 125 N O N 126 R C N 127 N N N 128 N C N 129 N O N 130 N N N 131 N C N 132 N N N 133 N C N 134 N C N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N N N 150 R C N 151 N C N 152 N O N 153 N C N 154 N S N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N O N 164 N P N 165 N O N 166 N O N 167 N O N 168 N C N 169 R C N 170 N O N 171 S C N 172 N O N 173 R C N 174 N O N 175 R C Y 176 N N Y 177 N C Y 178 N N Y 179 N C N 180 N C N 181 N O N 182 N N N 183 N C N 184 N N N 185 N N Y 186 N C N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N N N 202 S C N 203 N C N 204 N O N 205 N C N 206 N C N 207 N C N 208 N O N 209 N N N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N C N 228 N O N 229 N O N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 N C N 242 N C N 243 N O N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N N Y 257 N C Y 258 N C Y 259 N N N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N O N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 S C N 279 N C N 280 N C N 281 N C N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C N 301 N C N 302 N C N 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C N 323 N C N 324 N C N 325 N C N 326 N N N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C N 348 N C N 349 N S N 350 N C N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N C N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N N N 387 S C N 388 N C N 389 N O N 390 N C N 391 N C N 392 N C N 393 N O N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N O N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N N N 418 S C N 419 N C N 420 N O N 421 R C N 422 N O N 423 N C N 424 N O N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N N Y 443 N C Y 444 N C Y 445 N C Y 446 N C Y 447 N C N 448 N O N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N N N 462 S C N 463 N C N 464 N O N 465 N C Y 466 N C Y 467 N C Y 468 N C Y 469 N C Y 470 N C Y 471 N C N 472 N O N 473 N O N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N O N 486 N P N 487 N O N 488 N O N 489 N O N 490 N C N 491 R C N 492 N O N 493 S C N 494 N O N 495 R C N 496 N O N 497 R C N 498 N N N 499 N C N 500 N O N 501 N N N 502 N C N 503 N O N 504 N C N 505 N C N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N N N 520 S C N 521 N C N 522 N O N 523 N C N 524 N C N 525 N C N 526 N O N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H Y 1 N sing Y 2 N sing Y 3 N sing Y 4 N doub Y 5 N doub Y 6 N doub Y 7 N sing N 8 N sing N 9 N sing Y 10 N sing Y 11 N sing Y 12 N doub N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N doub N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N doub N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N doub N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing Y 185 N sing Y 186 N sing Y 187 N doub N 188 N sing Y 189 N sing N 190 N sing Y 191 N doub N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing Y 258 N sing Y 259 N doub Y 260 N doub N 261 N sing Y 262 N sing N 263 N sing Y 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N doub N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N doub N 431 N sing N 432 N sing N 433 N sing N 434 N sing Y 435 N doub Y 436 N sing Y 437 N sing N 438 N sing Y 439 N doub Y 440 N sing Y 441 N sing N 442 N sing Y 443 N sing Y 444 N doub N 445 N sing Y 446 N doub N 447 N sing Y 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N doub N 459 N sing N 460 N sing N 461 N sing N 462 N sing Y 463 N doub Y 464 N sing Y 465 N sing N 466 N sing Y 467 N doub N 468 N sing Y 469 N doub N 470 N sing Y 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N doub N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N doub N 503 N sing N 504 N sing N 505 N sing N 506 N doub N 507 N sing N 508 N doub N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N doub N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing US Nat.Chem.Biol. 1552-4450 10 927 929 10.1038/nchembio.1654 25242552 Structural basis for selective binding of m(6)A RNA by the YTHDC1 YTH domain. 2014 10.2210/pdb4r3i/pdb pdb_00004r3i 100 1 IMAGE PLATE 2014-01-21 RIGAKU RAXIS SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 18823.826 YTH domain-containing protein 1 1 man polymer 1600.035 RNA (5'-R(*GP*GP*(6MZ)P*CP*U)-3') 1 syn polymer UNKNOWN ATOM OR ION 7 syn non-polymer 18.015 water 89 nat water Putative splicing factor YT521, YT521-B no no GTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGG SPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQV IHKMRH GTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGG SPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQV IHKMRH A polypeptide(L) no yes GG(6MZ)CU GGACU B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample YTHDC1, KIAA1966, YT521 9606 Homo sapiens 562 Escherichia coli BL21-V2R-pRARE2 plasmid pET28-MHL 1 1.9 35.8 VAPOR DIFFUSION 6.5 25% PEG3350, 0.2 M amonium sulfate, 0.1 M bis-tris, pH 6.5, vapor diffusion, temperature 291K 291 Structural Genomics Consortium SGC chem_comp_atom chem_comp_bond database_2 entity_poly struct_conn struct_ref_seq_dif pdbx_initial_refinement_model repository Initial release Database references Database references Data collection Database references Derived calculations Polymer sequence Refinement description 1 0 2014-09-17 1 1 2014-10-01 1 2 2014-11-19 2 0 2024-02-28 2 1 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity_poly.pdbx_seq_one_letter_code_can _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details Y RCSB Y RCSB 2014-08-15 REL REL UNX UNKNOWN ATOM OR ION HOH water 32630 synthetic construct sample a different crystal form of same protein Other experimental model UNX 1 3 UNX UNX 601 A UNX 2 3 UNX UNX 602 A UNX 3 3 UNX UNX 603 A UNX 4 3 UNX UNX 604 A UNX 5 3 UNX UNX 605 A UNX 6 3 UNX UNX 606 A UNX 7 3 UNX UNX 607 A HOH 1 4 HOH HOH 701 A HOH 3 4 HOH HOH 702 A HOH 6 4 HOH HOH 703 A HOH 9 4 HOH HOH 704 A HOH 10 4 HOH HOH 705 A HOH 11 4 HOH HOH 706 A HOH 12 4 HOH HOH 707 A HOH 13 4 HOH HOH 708 A HOH 14 4 HOH HOH 709 A HOH 18 4 HOH HOH 710 A HOH 19 4 HOH HOH 711 A HOH 20 4 HOH HOH 712 A HOH 21 4 HOH HOH 713 A HOH 22 4 HOH HOH 714 A HOH 23 4 HOH HOH 715 A HOH 24 4 HOH HOH 716 A HOH 25 4 HOH HOH 717 A HOH 26 4 HOH HOH 718 A HOH 27 4 HOH HOH 719 A HOH 28 4 HOH HOH 720 A HOH 29 4 HOH HOH 721 A HOH 30 4 HOH HOH 722 A HOH 34 4 HOH HOH 723 A HOH 36 4 HOH HOH 724 A HOH 37 4 HOH HOH 725 A HOH 39 4 HOH HOH 726 A HOH 40 4 HOH HOH 727 A HOH 44 4 HOH HOH 728 A HOH 45 4 HOH HOH 729 A HOH 46 4 HOH HOH 730 A HOH 47 4 HOH HOH 731 A HOH 48 4 HOH HOH 732 A HOH 51 4 HOH HOH 733 A HOH 52 4 HOH HOH 734 A HOH 54 4 HOH HOH 735 A HOH 56 4 HOH HOH 736 A HOH 58 4 HOH HOH 737 A HOH 59 4 HOH HOH 738 A HOH 60 4 HOH HOH 739 A HOH 62 4 HOH HOH 740 A HOH 63 4 HOH HOH 741 A HOH 64 4 HOH HOH 742 A HOH 65 4 HOH HOH 743 A HOH 66 4 HOH HOH 744 A HOH 67 4 HOH HOH 745 A HOH 68 4 HOH HOH 746 A HOH 69 4 HOH HOH 747 A HOH 70 4 HOH HOH 748 A HOH 71 4 HOH HOH 749 A HOH 72 4 HOH HOH 750 A HOH 73 4 HOH HOH 751 A HOH 74 4 HOH HOH 752 A HOH 75 4 HOH HOH 753 A HOH 76 4 HOH HOH 754 A HOH 77 4 HOH HOH 755 A HOH 79 4 HOH HOH 756 A HOH 80 4 HOH HOH 757 A HOH 81 4 HOH HOH 758 A HOH 82 4 HOH HOH 759 A HOH 83 4 HOH HOH 760 A HOH 86 4 HOH HOH 761 A HOH 87 4 HOH HOH 762 A HOH 88 4 HOH HOH 763 A HOH 89 4 HOH HOH 764 A HOH 90 4 HOH HOH 765 A HOH 91 4 HOH HOH 766 A HOH 92 4 HOH HOH 767 A HOH 94 4 HOH HOH 768 A HOH 95 4 HOH HOH 769 A HOH 96 4 HOH HOH 770 A HOH 97 4 HOH HOH 771 A HOH 98 4 HOH HOH 772 A HOH 99 4 HOH HOH 773 A HOH 100 4 HOH HOH 774 A HOH 5 4 HOH HOH 101 B HOH 7 4 HOH HOH 102 B HOH 8 4 HOH HOH 103 B HOH 31 4 HOH HOH 104 B HOH 32 4 HOH HOH 105 B HOH 33 4 HOH HOH 106 B HOH 35 4 HOH HOH 107 B HOH 41 4 HOH HOH 108 B HOH 49 4 HOH HOH 109 B HOH 50 4 HOH HOH 110 B HOH 53 4 HOH HOH 111 B HOH 55 4 HOH HOH 112 B HOH 57 4 HOH HOH 113 B HOH 61 4 HOH HOH 114 B HOH 85 4 HOH HOH 115 B GLY 344 n 1 GLY 344 A THR 345 n 2 THR 345 A SER 346 n 3 SER 346 A LYS 347 n 4 LYS 347 A LEU 348 n 5 LEU 348 A LYS 349 n 6 LYS 349 A TYR 350 n 7 TYR 350 A VAL 351 n 8 VAL 351 A LEU 352 n 9 LEU 352 A GLN 353 n 10 GLN 353 A ASP 354 n 11 ASP 354 A ALA 355 n 12 ALA 355 A ARG 356 n 13 ARG 356 A PHE 357 n 14 PHE 357 A PHE 358 n 15 PHE 358 A LEU 359 n 16 LEU 359 A ILE 360 n 17 ILE 360 A LYS 361 n 18 LYS 361 A SER 362 n 19 SER 362 A ASN 363 n 20 ASN 363 A ASN 364 n 21 ASN 364 A HIS 365 n 22 HIS 365 A GLU 366 n 23 GLU 366 A ASN 367 n 24 ASN 367 A VAL 368 n 25 VAL 368 A SER 369 n 26 SER 369 A LEU 370 n 27 LEU 370 A ALA 371 n 28 ALA 371 A LYS 372 n 29 LYS 372 A ALA 373 n 30 ALA 373 A LYS 374 n 31 LYS 374 A GLY 375 n 32 GLY 375 A VAL 376 n 33 VAL 376 A TRP 377 n 34 TRP 377 A SER 378 n 35 SER 378 A THR 379 n 36 THR 379 A LEU 380 n 37 LEU 380 A PRO 381 n 38 PRO 381 A VAL 382 n 39 VAL 382 A ASN 383 n 40 ASN 383 A GLU 384 n 41 GLU 384 A LYS 385 n 42 LYS 385 A LYS 386 n 43 LYS 386 A LEU 387 n 44 LEU 387 A ASN 388 n 45 ASN 388 A LEU 389 n 46 LEU 389 A ALA 390 n 47 ALA 390 A PHE 391 n 48 PHE 391 A ARG 392 n 49 ARG 392 A SER 393 n 50 SER 393 A ALA 394 n 51 ALA 394 A ARG 395 n 52 ARG 395 A SER 396 n 53 SER 396 A VAL 397 n 54 VAL 397 A ILE 398 n 55 ILE 398 A LEU 399 n 56 LEU 399 A ILE 400 n 57 ILE 400 A PHE 401 n 58 PHE 401 A SER 402 n 59 SER 402 A VAL 403 n 60 VAL 403 A ARG 404 n 61 ARG 404 A GLU 405 n 62 GLU 405 A SER 406 n 63 SER 406 A GLY 407 n 64 GLY 407 A LYS 408 n 65 LYS 408 A PHE 409 n 66 PHE 409 A GLN 410 n 67 GLN 410 A GLY 411 n 68 GLY 411 A PHE 412 n 69 PHE 412 A ALA 413 n 70 ALA 413 A ARG 414 n 71 ARG 414 A LEU 415 n 72 LEU 415 A SER 416 n 73 SER 416 A SER 417 n 74 SER 417 A GLU 418 n 75 GLU 418 A SER 419 n 76 SER 419 A HIS 420 n 77 HIS 420 A HIS 421 n 78 HIS 421 A GLY 422 n 79 GLY 422 A GLY 423 n 80 GLY 423 A SER 424 n 81 SER 424 A PRO 425 n 82 PRO 425 A ILE 426 n 83 ILE 426 A HIS 427 n 84 HIS 427 A TRP 428 n 85 TRP 428 A VAL 429 n 86 VAL 429 A LEU 430 n 87 LEU 430 A PRO 431 n 88 PRO 431 A ALA 432 n 89 ALA 432 A GLY 433 n 90 GLY 433 A MET 434 n 91 MET 434 A SER 435 n 92 SER 435 A ALA 436 n 93 ALA 436 A LYS 437 n 94 LYS 437 A MET 438 n 95 MET 438 A LEU 439 n 96 LEU 439 A GLY 440 n 97 GLY 440 A GLY 441 n 98 GLY 441 A VAL 442 n 99 VAL 442 A PHE 443 n 100 PHE 443 A LYS 444 n 101 LYS 444 A ILE 445 n 102 ILE 445 A ASP 446 n 103 ASP 446 A TRP 447 n 104 TRP 447 A ILE 448 n 105 ILE 448 A CYS 449 n 106 CYS 449 A ARG 450 n 107 ARG 450 A ARG 451 n 108 ARG 451 A GLU 452 n 109 GLU 452 A LEU 453 n 110 LEU 453 A PRO 454 n 111 PRO 454 A PHE 455 n 112 PHE 455 A THR 456 n 113 THR 456 A LYS 457 n 114 LYS 457 A SER 458 n 115 SER 458 A ALA 459 n 116 ALA 459 A HIS 460 n 117 HIS 460 A LEU 461 n 118 LEU 461 A THR 462 n 119 THR 462 A ASN 463 n 120 ASN 463 A PRO 464 n 121 PRO 464 A TRP 465 n 122 TRP 465 A ASN 466 n 123 ASN 466 A GLU 467 n 124 GLU 467 A HIS 468 n 125 HIS 468 A LYS 469 n 126 LYS 469 A PRO 470 n 127 PRO 470 A VAL 471 n 128 VAL 471 A LYS 472 n 129 LYS 472 A ILE 473 n 130 ILE 473 A GLY 474 n 131 GLY 474 A ARG 475 n 132 ARG 475 A ASP 476 n 133 ASP 476 A GLY 477 n 134 GLY 477 A GLN 478 n 135 GLN 478 A GLU 479 n 136 GLU 479 A ILE 480 n 137 ILE 480 A GLU 481 n 138 GLU 481 A LEU 482 n 139 LEU 482 A GLU 483 n 140 GLU 483 A CYS 484 n 141 CYS 484 A GLY 485 n 142 GLY 485 A THR 486 n 143 THR 486 A GLN 487 n 144 GLN 487 A LEU 488 n 145 LEU 488 A CYS 489 n 146 CYS 489 A LEU 490 n 147 LEU 490 A LEU 491 n 148 LEU 491 A PHE 492 n 149 PHE 492 A PRO 493 n 150 PRO 493 A PRO 494 n 151 PRO 494 A ASP 495 n 152 ASP 495 A GLU 496 n 153 GLU 496 A SER 497 n 154 SER 497 A ILE 498 n 155 ILE 498 A ASP 499 n 156 ASP 499 A LEU 500 n 157 LEU 500 A TYR 501 n 158 TYR 501 A GLN 502 n 159 GLN 502 A VAL 503 n 160 VAL 503 A ILE 504 n 161 ILE 504 A HIS 505 n 162 HIS 505 A LYS 506 n 163 LYS 506 A MET 507 n 164 MET 507 A n 165 508 A n 166 509 A G 1 n 1 G 1 B G 2 n 2 G 2 B 6MZ 3 n 3 6MZ 3 B C 4 n 4 C 4 B U 5 n 5 U 5 B software_defined_assembly PISA 2 dimeric 1990 -9 8310 B 6MZ 3 N6-METHYLADENOSINE-5'-MONOPHOSPHATE B 6MZ 3 A 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TRP 377 A N TRP 34 A O PHE 443 A O PHE 100 A O ILE 448 A O ILE 105 A N PHE 412 A N PHE 69 A O ALA 413 A O ALA 70 A N LEU 399 A N LEU 56 A O ILE 398 A O ILE 55 A N ARG 356 A N ARG 13 A N PHE 357 A N PHE 14 A O ILE 480 A O ILE 137 A N PHE 409 A N PHE 66 A O LEU 453 A O LEU 110 1 A OG1 THR 345 A OG1 THR 2 1 Y 1 A CG2 THR 345 A CG2 THR 2 1 Y 1 A OG SER 346 A OG SER 3 1 Y 1 A CE LYS 349 A CE LYS 6 1 Y 1 A NZ LYS 349 A NZ LYS 6 1 Y 1 A CD LYS 374 A CD LYS 31 1 Y 1 A CE LYS 374 A CE LYS 31 1 Y 1 A NZ LYS 374 A NZ LYS 31 1 Y 1 A CD LYS 386 A CD LYS 43 1 Y 1 A CE LYS 386 A CE LYS 43 1 Y 1 A NZ LYS 386 A NZ LYS 43 1 Y 1 A NE ARG 392 A NE ARG 49 1 Y 1 A CZ ARG 392 A CZ ARG 49 1 Y 1 A NH1 ARG 392 A NH1 ARG 49 1 Y 1 A NH2 ARG 392 A NH2 ARG 49 1 Y 1 A NZ LYS 408 A NZ LYS 65 1 Y 1 A CG LYS 437 A CG LYS 94 1 Y 1 A CD LYS 437 A CD LYS 94 1 Y 1 A CE LYS 437 A CE LYS 94 1 Y 1 A NZ LYS 437 A NZ LYS 94 1 Y 1 A CG GLN 502 A CG GLN 159 1 Y 1 A CD GLN 502 A CD GLN 159 1 Y 1 A OE1 GLN 502 A OE1 GLN 159 1 Y 1 A NE2 GLN 502 A NE2 GLN 159 1 Y 1 A CG HIS 505 A CG HIS 162 1 Y 1 A ND1 HIS 505 A ND1 HIS 162 1 Y 1 A CD2 HIS 505 A CD2 HIS 162 1 Y 1 A CE1 HIS 505 A CE1 HIS 162 1 Y 1 A NE2 HIS 505 A NE2 HIS 162 1 Y 1 A ARG 508 A ARG 165 1 Y 1 A HIS 509 A HIS 166 1 Y 1 A GLU 405 53.71 16.26 73.530 21.3503 2.110 -1.3300 -0.0000 0.7400 -1.5700 -0.0000 2.2800 0.9450 0.8920 Diffraction data for molecular replacement and early refinement were reduced with HKL3000. COOT was used for interactive model building. Model geometry was evaluated with MOLPROBITY. 0.2636 0.2034 0.2064 1.8000 30.0000 700 14013 5.0000 97.1700 0.2466 0.1859 1.000 0.500 0.7846 4.2370 0.1280 0.1687 0.1627 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.1690 0.1630 0.8000 0.8000 1.2000 a different crystal form of same protein MAXIMUM LIKELIHOOD MASK 1.8000 30.0000 89 1477 7 106 1275 0.012 0.019 1430 0.001 0.020 1308 1.371 1.923 1957 0.792 3.000 3013 6.206 5.000 163 31.952 23.636 55 11.705 15.000 225 15.135 15.000 7 0.077 0.200 215 0.007 0.021 1525 0.001 0.020 326 1.826 2.108 655 1.825 2.102 654 2.749 3.144 817 0.2910 0.2660 1.8470 48 932 980 20 94.4100 1.800 34.730 4R3I 14029 0.112 1 8.500 3.600 97.100 0.587 1.800 1.840 2.300 2551 773 0.369 1 3.300 90.700 0.041 8.990 34.730 23.600 366 114 0.027 1 3.200 92.000 data scaling Phil Evans 07/01/14 http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html Aimless program 0.2.17 phasing Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org Dec. 10, 2013 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.14 data reduction XDS The crystal structure of an RNA complex 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N A GLY 344 A GLY 1 HELX_P A GLN 353 A GLN 10 1 1 10 A ASN 364 A ASN 21 HELX_P A GLY 375 A GLY 32 1 2 12 A LEU 380 A LEU 37 HELX_P A ARG 392 A ARG 49 1 3 13 A ALA 436 A ALA 93 HELX_P A GLY 440 A GLY 97 5 4 5 A THR 456 A THR 113 HELX_P A ALA 459 A ALA 116 5 5 4 A ASN 463 A ASN 120 HELX_P A GLU 467 A GLU 124 5 6 5 A GLU 481 A GLU 138 HELX_P A PHE 492 A PHE 149 1 7 12 A ASP 499 A ASP 156 HELX_P A MET 507 A MET 164 1 8 9 covale 1.610 both B G 2 B O3' G 2 1_555 B 6MZ 3 B P 6MZ 3 1_555 covale 1.591 both B 6MZ 3 B O3' 6MZ 3 1_555 B C 4 B P C 4 1_555 RNA BINDING PROTEIN/RNA structural genomics, Structural Genomics Consortium, SGC, RNA BINDING PROTEIN-RNA complex YTDC1_HUMAN UNP 1 345 Q96MU7 TSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGS PIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQVI HKMRH 4R3I PDB 2 4R3I 345 509 4R3I 345 509 Q96MU7 A 1 2 166 1 5 4R3I 1 5 4R3I B 2 1 5 1 expression tag GLY 344 4R3I A Q96MU7 UNP 1 6 2 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A VAL 376 A VAL 33 A TRP 377 A TRP 34 A PHE 443 A PHE 100 A CYS 449 A CYS 106 A GLY 411 A GLY 68 A LEU 415 A LEU 72 A SER 396 A SER 53 A VAL 403 A VAL 60 A ALA 355 A ALA 12 A SER 362 A SER 19 A GLU 479 A GLU 136 A ILE 480 A ILE 137 A LYS 408 A LYS 65 A PHE 409 A PHE 66 A LEU 453 A LEU 110 A PRO 454 A PRO 111 4 P 1 21 1