0.010356
0.000000
0.000000
-0.000000
0.010356
0.000000
0.000000
-0.000000
0.006713
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
96.567
96.567
148.970
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a hypothetical protein (PARMER_01801) from Parabacteroides merdae ATCC 43184 at 2.30 A resolution
10.2210/pdb4r7f/pdb
pdb_00004r7f
100
1
Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)
PIXEL
2014-05-21
DECTRIS PILATUS 6M
single crystal Si(111) bent
MAD
M
x-ray
1
0.91837
1.0
0.97941
1.0
0.97898
1.0
BL11-1
SSRL
0.91837,0.97941,0.97898
SYNCHROTRON
SSRL BEAMLINE BL11-1
46792.125
Uncharacterized protein
1
man
polymer
92.094
GLYCEROL
1
syn
non-polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
18.015
water
277
nat
water
no
yes
GQVKFFTDVNSKQIKTLQVKVAGELISEPYIALGGEEQIEINFDGLGSGYTRYAYNVVHCNADWTQSQLSPIEY(MSE)N
GFQGTTIDDFANSIGTTTQYSNYRLLLPNDDVQFKVSGNYAIQVYNEDTPDQIIFTACFSVVEPVVNISASVSGNTDIDT
NQSHQQVSFNINNKNFPITYPQTDLKIFVYQDNRRDNAVTDLQP(MSE)SILENQISYTYNRNLIFPAGNEYRR(MSE)E
FLSNKYNG(MSE)HVENISFHNPYYNVEL(MSE)TDYRRDKGTYQYDQDQDGRFFIRCSDCNDPDTEADYYIVHFTLACD
PLPDGSVYLNGELFNNVLDEKSK(MSE)GYNFETKQYEKAVLLKQGSYNYQYLFVPTGSSVGQTGPIEGNYYQTQNEYSI
YVYYRP(MSE)GARYDRLIGVTTVRNE(MSE)QVF
GQVKFFTDVNSKQIKTLQVKVAGELISEPYIALGGEEQIEINFDGLGSGYTRYAYNVVHCNADWTQSQLSPIEYMNGFQG
TTIDDFANSIGTTTQYSNYRLLLPNDDVQFKVSGNYAIQVYNEDTPDQIIFTACFSVVEPVVNISASVSGNTDIDTNQSH
QQVSFNINNKNFPITYPQTDLKIFVYQDNRRDNAVTDLQPMSILENQISYTYNRNLIFPAGNEYRRMEFLSNKYNGMHVE
NISFHNPYYNVELMTDYRRDKGTYQYDQDQDGRFFIRCSDCNDPDTEADYYIVHFTLACDPLPDGSVYLNGELFNNVLDE
KSKMGYNFETKQYEKAVLLKQGSYNYQYLFVPTGSSVGQTGPIEGNYYQTQNEYSIYVYYRPMGARYDRLIGVTTVRNEM
QVF
A
JCSG-419702
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 43184
sample
PARMER_01801
411477
Parabacteroides merdae
562
Escherichia Coli
PB1
Plasmid
SpeedET
1
3.71
66.86
VAPOR DIFFUSION, SITTING DROP
7.0
0.2M magnesium chloride, 2.5M sodium chloride, 0.1M TRIS pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
Joint Center for Structural Genomics
JCSG
PSI:Biology
software
citation_author
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Refinement description
Database references
Database references
Derived calculations
1
0
2014-12-17
1
1
2017-11-22
1
2
2018-01-24
1
3
2023-02-01
_software.classification
_software.name
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2014-08-27
REL
REL
GOL
GLYCEROL
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
CL
CHLORIDE ION
MG
MAGNESIUM ION
HOH
water
THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 23-424 OF THE TARGET SEQUENCE.
GOL
420
2
GOL
GOL
501
A
TRS
421
3
TRS
TRS
502
A
TRS
422
3
TRS
TRS
503
A
CL
423
4
CL
CL
504
A
CL
424
4
CL
CL
505
A
MG
425
5
MG
MG
506
A
MG
426
5
MG
MG
507
A
HOH
427
6
HOH
HOH
601
A
HOH
428
6
HOH
HOH
602
A
HOH
429
6
HOH
HOH
603
A
HOH
430
6
HOH
HOH
604
A
HOH
431
6
HOH
HOH
605
A
HOH
432
6
HOH
HOH
606
A
HOH
433
6
HOH
HOH
607
A
HOH
434
6
HOH
HOH
608
A
HOH
435
6
HOH
HOH
609
A
HOH
436
6
HOH
HOH
610
A
HOH
437
6
HOH
HOH
611
A
HOH
438
6
HOH
HOH
612
A
HOH
439
6
HOH
HOH
613
A
HOH
440
6
HOH
HOH
614
A
HOH
441
6
HOH
HOH
615
A
HOH
442
6
HOH
HOH
616
A
HOH
443
6
HOH
HOH
617
A
HOH
444
6
HOH
HOH
618
A
HOH
445
6
HOH
HOH
619
A
HOH
446
6
HOH
HOH
620
A
HOH
447
6
HOH
HOH
621
A
HOH
448
6
HOH
HOH
622
A
HOH
449
6
HOH
HOH
623
A
HOH
450
6
HOH
HOH
624
A
HOH
451
6
HOH
HOH
625
A
HOH
452
6
HOH
HOH
626
A
HOH
453
6
HOH
HOH
627
A
HOH
454
6
HOH
HOH
628
A
HOH
455
6
HOH
HOH
629
A
HOH
456
6
HOH
HOH
630
A
HOH
457
6
HOH
HOH
631
A
HOH
458
6
HOH
HOH
632
A
HOH
459
6
HOH
HOH
633
A
HOH
460
6
HOH
HOH
634
A
HOH
461
6
HOH
HOH
635
A
HOH
462
6
HOH
HOH
636
A
HOH
463
6
HOH
HOH
637
A
HOH
464
6
HOH
HOH
638
A
HOH
465
6
HOH
HOH
639
A
HOH
466
6
HOH
HOH
640
A
HOH
467
6
HOH
HOH
641
A
HOH
468
6
HOH
HOH
642
A
HOH
469
6
HOH
HOH
643
A
HOH
470
6
HOH
HOH
644
A
HOH
471
6
HOH
HOH
645
A
HOH
472
6
HOH
HOH
646
A
HOH
473
6
HOH
HOH
647
A
HOH
474
6
HOH
HOH
648
A
HOH
475
6
HOH
HOH
649
A
HOH
476
6
HOH
HOH
650
A
HOH
477
6
HOH
HOH
651
A
HOH
478
6
HOH
HOH
652
A
HOH
479
6
HOH
HOH
653
A
HOH
480
6
HOH
HOH
654
A
HOH
481
6
HOH
HOH
655
A
HOH
482
6
HOH
HOH
656
A
HOH
483
6
HOH
HOH
657
A
HOH
484
6
HOH
HOH
658
A
HOH
485
6
HOH
HOH
659
A
HOH
486
6
HOH
HOH
660
A
HOH
487
6
HOH
HOH
661
A
HOH
488
6
HOH
HOH
662
A
HOH
489
6
HOH
HOH
663
A
HOH
490
6
HOH
HOH
664
A
HOH
491
6
HOH
HOH
665
A
HOH
492
6
HOH
HOH
666
A
HOH
493
6
HOH
HOH
667
A
HOH
494
6
HOH
HOH
668
A
HOH
495
6
HOH
HOH
669
A
HOH
496
6
HOH
HOH
670
A
HOH
497
6
HOH
HOH
671
A
HOH
498
6
HOH
HOH
672
A
HOH
499
6
HOH
HOH
673
A
HOH
500
6
HOH
HOH
674
A
HOH
501
6
HOH
HOH
675
A
HOH
502
6
HOH
HOH
676
A
HOH
503
6
HOH
HOH
677
A
HOH
504
6
HOH
HOH
678
A
HOH
505
6
HOH
HOH
679
A
HOH
506
6
HOH
HOH
680
A
HOH
507
6
HOH
HOH
681
A
HOH
508
6
HOH
HOH
682
A
HOH
509
6
HOH
HOH
683
A
HOH
510
6
HOH
HOH
684
A
HOH
511
6
HOH
HOH
685
A
HOH
512
6
HOH
HOH
686
A
HOH
513
6
HOH
HOH
687
A
HOH
514
6
HOH
HOH
688
A
HOH
515
6
HOH
HOH
689
A
HOH
516
6
HOH
HOH
690
A
HOH
517
6
HOH
HOH
691
A
HOH
518
6
HOH
HOH
692
A
HOH
519
6
HOH
HOH
693
A
HOH
520
6
HOH
HOH
694
A
HOH
521
6
HOH
HOH
695
A
HOH
522
6
HOH
HOH
696
A
HOH
523
6
HOH
HOH
697
A
HOH
524
6
HOH
HOH
698
A
HOH
525
6
HOH
HOH
699
A
HOH
526
6
HOH
HOH
700
A
HOH
527
6
HOH
HOH
701
A
HOH
528
6
HOH
HOH
702
A
HOH
529
6
HOH
HOH
703
A
HOH
530
6
HOH
HOH
704
A
HOH
531
6
HOH
HOH
705
A
HOH
532
6
HOH
HOH
706
A
HOH
533
6
HOH
HOH
707
A
HOH
534
6
HOH
HOH
708
A
HOH
535
6
HOH
HOH
709
A
HOH
536
6
HOH
HOH
710
A
HOH
537
6
HOH
HOH
711
A
HOH
538
6
HOH
HOH
712
A
HOH
539
6
HOH
HOH
713
A
HOH
540
6
HOH
HOH
714
A
HOH
541
6
HOH
HOH
715
A
HOH
542
6
HOH
HOH
716
A
HOH
543
6
HOH
HOH
717
A
HOH
544
6
HOH
HOH
718
A
HOH
545
6
HOH
HOH
719
A
HOH
546
6
HOH
HOH
720
A
HOH
547
6
HOH
HOH
721
A
HOH
548
6
HOH
HOH
722
A
HOH
549
6
HOH
HOH
723
A
HOH
550
6
HOH
HOH
724
A
HOH
551
6
HOH
HOH
725
A
HOH
552
6
HOH
HOH
726
A
HOH
553
6
HOH
HOH
727
A
HOH
554
6
HOH
HOH
728
A
HOH
555
6
HOH
HOH
729
A
HOH
556
6
HOH
HOH
730
A
HOH
557
6
HOH
HOH
731
A
HOH
558
6
HOH
HOH
732
A
HOH
559
6
HOH
HOH
733
A
HOH
560
6
HOH
HOH
734
A
HOH
561
6
HOH
HOH
735
A
HOH
562
6
HOH
HOH
736
A
HOH
563
6
HOH
HOH
737
A
HOH
564
6
HOH
HOH
738
A
HOH
565
6
HOH
HOH
739
A
HOH
566
6
HOH
HOH
740
A
HOH
567
6
HOH
HOH
741
A
HOH
568
6
HOH
HOH
742
A
HOH
569
6
HOH
HOH
743
A
HOH
570
6
HOH
HOH
744
A
HOH
571
6
HOH
HOH
745
A
HOH
572
6
HOH
HOH
746
A
HOH
573
6
HOH
HOH
747
A
HOH
574
6
HOH
HOH
748
A
HOH
575
6
HOH
HOH
749
A
HOH
576
6
HOH
HOH
750
A
HOH
577
6
HOH
HOH
751
A
HOH
578
6
HOH
HOH
752
A
HOH
579
6
HOH
HOH
753
A
HOH
580
6
HOH
HOH
754
A
HOH
581
6
HOH
HOH
755
A
HOH
582
6
HOH
HOH
756
A
HOH
583
6
HOH
HOH
757
A
HOH
584
6
HOH
HOH
758
A
HOH
585
6
HOH
HOH
759
A
HOH
586
6
HOH
HOH
760
A
HOH
587
6
HOH
HOH
761
A
HOH
588
6
HOH
HOH
762
A
HOH
589
6
HOH
HOH
763
A
HOH
590
6
HOH
HOH
764
A
HOH
591
6
HOH
HOH
765
A
HOH
592
6
HOH
HOH
766
A
HOH
593
6
HOH
HOH
767
A
HOH
594
6
HOH
HOH
768
A
HOH
595
6
HOH
HOH
769
A
HOH
596
6
HOH
HOH
770
A
HOH
597
6
HOH
HOH
771
A
HOH
598
6
HOH
HOH
772
A
HOH
599
6
HOH
HOH
773
A
HOH
600
6
HOH
HOH
774
A
HOH
601
6
HOH
HOH
775
A
HOH
602
6
HOH
HOH
776
A
HOH
603
6
HOH
HOH
777
A
HOH
604
6
HOH
HOH
778
A
HOH
605
6
HOH
HOH
779
A
HOH
606
6
HOH
HOH
780
A
HOH
607
6
HOH
HOH
781
A
HOH
608
6
HOH
HOH
782
A
HOH
609
6
HOH
HOH
783
A
HOH
610
6
HOH
HOH
784
A
HOH
611
6
HOH
HOH
785
A
HOH
612
6
HOH
HOH
786
A
HOH
613
6
HOH
HOH
787
A
HOH
614
6
HOH
HOH
788
A
HOH
615
6
HOH
HOH
789
A
HOH
616
6
HOH
HOH
790
A
HOH
617
6
HOH
HOH
791
A
HOH
618
6
HOH
HOH
792
A
HOH
619
6
HOH
HOH
793
A
HOH
620
6
HOH
HOH
794
A
HOH
621
6
HOH
HOH
795
A
HOH
622
6
HOH
HOH
796
A
HOH
623
6
HOH
HOH
797
A
HOH
624
6
HOH
HOH
798
A
HOH
625
6
HOH
HOH
799
A
HOH
626
6
HOH
HOH
800
A
HOH
627
6
HOH
HOH
801
A
HOH
628
6
HOH
HOH
802
A
HOH
629
6
HOH
HOH
803
A
HOH
630
6
HOH
HOH
804
A
HOH
631
6
HOH
HOH
805
A
HOH
632
6
HOH
HOH
806
A
HOH
633
6
HOH
HOH
807
A
HOH
634
6
HOH
HOH
808
A
HOH
635
6
HOH
HOH
809
A
HOH
636
6
HOH
HOH
810
A
HOH
637
6
HOH
HOH
811
A
HOH
638
6
HOH
HOH
812
A
HOH
639
6
HOH
HOH
813
A
HOH
640
6
HOH
HOH
814
A
HOH
641
6
HOH
HOH
815
A
HOH
642
6
HOH
HOH
816
A
HOH
643
6
HOH
HOH
817
A
HOH
644
6
HOH
HOH
818
A
HOH
645
6
HOH
HOH
819
A
HOH
646
6
HOH
HOH
820
A
HOH
647
6
HOH
HOH
821
A
HOH
648
6
HOH
HOH
822
A
HOH
649
6
HOH
HOH
823
A
HOH
650
6
HOH
HOH
824
A
HOH
651
6
HOH
HOH
825
A
HOH
652
6
HOH
HOH
826
A
HOH
653
6
HOH
HOH
827
A
HOH
654
6
HOH
HOH
828
A
HOH
655
6
HOH
HOH
829
A
HOH
656
6
HOH
HOH
830
A
HOH
657
6
HOH
HOH
831
A
HOH
658
6
HOH
HOH
832
A
HOH
659
6
HOH
HOH
833
A
HOH
660
6
HOH
HOH
834
A
HOH
661
6
HOH
HOH
835
A
HOH
662
6
HOH
HOH
836
A
HOH
663
6
HOH
HOH
837
A
HOH
664
6
HOH
HOH
838
A
HOH
665
6
HOH
HOH
839
A
HOH
666
6
HOH
HOH
840
A
HOH
667
6
HOH
HOH
841
A
HOH
668
6
HOH
HOH
842
A
HOH
669
6
HOH
HOH
843
A
HOH
670
6
HOH
HOH
844
A
HOH
671
6
HOH
HOH
845
A
HOH
672
6
HOH
HOH
846
A
HOH
673
6
HOH
HOH
847
A
HOH
674
6
HOH
HOH
848
A
HOH
675
6
HOH
HOH
849
A
HOH
676
6
HOH
HOH
850
A
HOH
677
6
HOH
HOH
851
A
HOH
678
6
HOH
HOH
852
A
HOH
679
6
HOH
HOH
853
A
HOH
680
6
HOH
HOH
854
A
HOH
681
6
HOH
HOH
855
A
HOH
682
6
HOH
HOH
856
A
HOH
683
6
HOH
HOH
857
A
HOH
684
6
HOH
HOH
858
A
HOH
685
6
HOH
HOH
859
A
HOH
686
6
HOH
HOH
860
A
HOH
687
6
HOH
HOH
861
A
HOH
688
6
HOH
HOH
862
A
HOH
689
6
HOH
HOH
863
A
HOH
690
6
HOH
HOH
864
A
HOH
691
6
HOH
HOH
865
A
HOH
692
6
HOH
HOH
866
A
HOH
693
6
HOH
HOH
867
A
HOH
694
6
HOH
HOH
868
A
HOH
695
6
HOH
HOH
869
A
HOH
696
6
HOH
HOH
870
A
HOH
697
6
HOH
HOH
871
A
HOH
698
6
HOH
HOH
872
A
HOH
699
6
HOH
HOH
873
A
HOH
700
6
HOH
HOH
874
A
HOH
701
6
HOH
HOH
875
A
HOH
702
6
HOH
HOH
876
A
HOH
703
6
HOH
HOH
877
A
n
1
0
A
GLN
23
n
2
GLN
23
A
VAL
24
n
3
VAL
24
A
LYS
25
n
4
LYS
25
A
PHE
26
n
5
PHE
26
A
PHE
27
n
6
PHE
27
A
THR
28
n
7
THR
28
A
ASP
29
n
8
ASP
29
A
VAL
30
n
9
VAL
30
A
ASN
31
n
10
ASN
31
A
SER
32
n
11
SER
32
A
LYS
33
n
12
LYS
33
A
GLN
34
n
13
GLN
34
A
ILE
35
n
14
ILE
35
A
LYS
36
n
15
LYS
36
A
THR
37
n
16
THR
37
A
LEU
38
n
17
LEU
38
A
GLN
39
n
18
GLN
39
A
VAL
40
n
19
VAL
40
A
LYS
41
n
20
LYS
41
A
VAL
42
n
21
VAL
42
A
ALA
43
n
22
ALA
43
A
GLY
44
n
23
GLY
44
A
GLU
45
n
24
GLU
45
A
LEU
46
n
25
LEU
46
A
ILE
47
n
26
ILE
47
A
SER
48
n
27
SER
48
A
GLU
49
n
28
GLU
49
A
PRO
50
n
29
PRO
50
A
TYR
51
n
30
TYR
51
A
ILE
52
n
31
ILE
52
A
ALA
53
n
32
ALA
53
A
LEU
54
n
33
LEU
54
A
GLY
55
n
34
GLY
55
A
GLY
56
n
35
GLY
56
A
GLU
57
n
36
GLU
57
A
GLU
58
n
37
GLU
58
A
GLN
59
n
38
GLN
59
A
ILE
60
n
39
ILE
60
A
GLU
61
n
40
GLU
61
A
ILE
62
n
41
ILE
62
A
ASN
63
n
42
ASN
63
A
PHE
64
n
43
PHE
64
A
ASP
65
n
44
ASP
65
A
GLY
66
n
45
GLY
66
A
LEU
67
n
46
LEU
67
A
GLY
68
n
47
GLY
68
A
SER
69
n
48
SER
69
A
GLY
70
n
49
GLY
70
A
TYR
71
n
50
TYR
71
A
THR
72
n
51
THR
72
A
ARG
73
n
52
ARG
73
A
TYR
74
n
53
TYR
74
A
ALA
75
n
54
ALA
75
A
TYR
76
n
55
TYR
76
A
ASN
77
n
56
ASN
77
A
VAL
78
n
57
VAL
78
A
VAL
79
n
58
VAL
79
A
HIS
80
n
59
HIS
80
A
CYS
81
n
60
CYS
81
A
ASN
82
n
61
ASN
82
A
ALA
83
n
62
ALA
83
A
ASP
84
n
63
ASP
84
A
TRP
85
n
64
TRP
85
A
THR
86
n
65
THR
86
A
GLN
87
n
66
GLN
87
A
SER
88
n
67
SER
88
A
GLN
89
n
68
GLN
89
A
LEU
90
n
69
LEU
90
A
SER
91
n
70
SER
91
A
PRO
92
n
71
PRO
92
A
ILE
93
n
72
ILE
93
A
GLU
94
n
73
GLU
94
A
TYR
95
n
74
TYR
95
A
MSE
96
n
75
MSE
96
A
ASN
97
n
76
ASN
97
A
GLY
98
n
77
GLY
98
A
PHE
99
n
78
PHE
99
A
GLN
100
n
79
GLN
100
A
GLY
101
n
80
GLY
101
A
THR
102
n
81
THR
102
A
THR
103
n
82
THR
103
A
ILE
104
n
83
ILE
104
A
ASP
105
n
84
ASP
105
A
ASP
106
n
85
ASP
106
A
PHE
107
n
86
PHE
107
A
ALA
108
n
87
ALA
108
A
ASN
109
n
88
ASN
109
A
SER
110
n
89
SER
110
A
ILE
111
n
90
ILE
111
A
GLY
112
n
91
GLY
112
A
THR
113
n
92
THR
113
A
THR
114
n
93
THR
114
A
THR
115
n
94
THR
115
A
GLN
116
n
95
GLN
116
A
TYR
117
n
96
TYR
117
A
SER
118
n
97
SER
118
A
ASN
119
n
98
ASN
119
A
TYR
120
n
99
TYR
120
A
ARG
121
n
100
ARG
121
A
LEU
122
n
101
LEU
122
A
LEU
123
n
102
LEU
123
A
LEU
124
n
103
LEU
124
A
PRO
125
n
104
PRO
125
A
ASN
126
n
105
ASN
126
A
ASP
127
n
106
ASP
127
A
ASP
128
n
107
ASP
128
A
VAL
129
n
108
VAL
129
A
GLN
130
n
109
GLN
130
A
PHE
131
n
110
PHE
131
A
LYS
132
n
111
LYS
132
A
VAL
133
n
112
VAL
133
A
SER
134
n
113
SER
134
A
GLY
135
n
114
GLY
135
A
ASN
136
n
115
ASN
136
A
TYR
137
n
116
TYR
137
A
ALA
138
n
117
ALA
138
A
ILE
139
n
118
ILE
139
A
GLN
140
n
119
GLN
140
A
VAL
141
n
120
VAL
141
A
TYR
142
n
121
TYR
142
A
ASN
143
n
122
ASN
143
A
GLU
144
n
123
GLU
144
A
ASP
145
n
124
ASP
145
A
THR
146
n
125
THR
146
A
PRO
147
n
126
PRO
147
A
ASP
148
n
127
ASP
148
A
GLN
149
n
128
GLN
149
A
ILE
150
n
129
ILE
150
A
ILE
151
n
130
ILE
151
A
PHE
152
n
131
PHE
152
A
THR
153
n
132
THR
153
A
ALA
154
n
133
ALA
154
A
CYS
155
n
134
CYS
155
A
PHE
156
n
135
PHE
156
A
SER
157
n
136
SER
157
A
VAL
158
n
137
VAL
158
A
VAL
159
n
138
VAL
159
A
GLU
160
n
139
GLU
160
A
PRO
161
n
140
PRO
161
A
VAL
162
n
141
VAL
162
A
VAL
163
n
142
VAL
163
A
ASN
164
n
143
ASN
164
A
ILE
165
n
144
ILE
165
A
SER
166
n
145
SER
166
A
ALA
167
n
146
ALA
167
A
SER
168
n
147
SER
168
A
VAL
169
n
148
VAL
169
A
SER
170
n
149
SER
170
A
GLY
171
n
150
GLY
171
A
ASN
172
n
151
ASN
172
A
THR
173
n
152
THR
173
A
ASP
174
n
153
ASP
174
A
ILE
175
n
154
ILE
175
A
ASP
176
n
155
ASP
176
A
THR
177
n
156
THR
177
A
ASN
178
n
157
ASN
178
A
GLN
179
n
158
GLN
179
A
SER
180
n
159
SER
180
A
HIS
181
n
160
HIS
181
A
GLN
182
n
161
GLN
182
A
GLN
183
n
162
GLN
183
A
VAL
184
n
163
VAL
184
A
SER
185
n
164
SER
185
A
PHE
186
n
165
PHE
186
A
ASN
187
n
166
ASN
187
A
ILE
188
n
167
ILE
188
A
ASN
189
n
168
ASN
189
A
ASN
190
n
169
ASN
190
A
LYS
191
n
170
LYS
191
A
ASN
192
n
171
ASN
192
A
PHE
193
n
172
PHE
193
A
PRO
194
n
173
PRO
194
A
ILE
195
n
174
ILE
195
A
THR
196
n
175
THR
196
A
TYR
197
n
176
TYR
197
A
PRO
198
n
177
PRO
198
A
GLN
199
n
178
GLN
199
A
THR
200
n
179
THR
200
A
ASP
201
n
180
ASP
201
A
LEU
202
n
181
LEU
202
A
LYS
203
n
182
LYS
203
A
ILE
204
n
183
ILE
204
A
PHE
205
n
184
PHE
205
A
VAL
206
n
185
VAL
206
A
TYR
207
n
186
TYR
207
A
GLN
208
n
187
GLN
208
A
ASP
209
n
188
ASP
209
A
ASN
210
n
189
ASN
210
A
ARG
211
n
190
ARG
211
A
ARG
212
n
191
ARG
212
A
ASP
213
n
192
ASP
213
A
ASN
214
n
193
ASN
214
A
ALA
215
n
194
ALA
215
A
VAL
216
n
195
VAL
216
A
THR
217
n
196
THR
217
A
ASP
218
n
197
ASP
218
A
LEU
219
n
198
LEU
219
A
GLN
220
n
199
GLN
220
A
PRO
221
n
200
PRO
221
A
MSE
222
n
201
MSE
222
A
SER
223
n
202
SER
223
A
ILE
224
n
203
ILE
224
A
LEU
225
n
204
LEU
225
A
GLU
226
n
205
GLU
226
A
ASN
227
n
206
ASN
227
A
GLN
228
n
207
GLN
228
A
ILE
229
n
208
ILE
229
A
SER
230
n
209
SER
230
A
TYR
231
n
210
TYR
231
A
THR
232
n
211
THR
232
A
TYR
233
n
212
TYR
233
A
ASN
234
n
213
ASN
234
A
ARG
235
n
214
ARG
235
A
ASN
236
n
215
ASN
236
A
LEU
237
n
216
LEU
237
A
ILE
238
n
217
ILE
238
A
PHE
239
n
218
PHE
239
A
PRO
240
n
219
PRO
240
A
ALA
241
n
220
ALA
241
A
GLY
242
n
221
GLY
242
A
ASN
243
n
222
ASN
243
A
GLU
244
n
223
GLU
244
A
TYR
245
n
224
TYR
245
A
ARG
246
n
225
ARG
246
A
ARG
247
n
226
ARG
247
A
MSE
248
n
227
MSE
248
A
GLU
249
n
228
GLU
249
A
PHE
250
n
229
PHE
250
A
LEU
251
n
230
LEU
251
A
SER
252
n
231
SER
252
A
ASN
253
n
232
ASN
253
A
LYS
254
n
233
LYS
254
A
TYR
255
n
234
TYR
255
A
ASN
256
n
235
ASN
256
A
GLY
257
n
236
GLY
257
A
MSE
258
n
237
MSE
258
A
HIS
259
n
238
HIS
259
A
VAL
260
n
239
VAL
260
A
GLU
261
n
240
GLU
261
A
ASN
262
n
241
ASN
262
A
ILE
263
n
242
ILE
263
A
SER
264
n
243
SER
264
A
PHE
265
n
244
PHE
265
A
HIS
266
n
245
HIS
266
A
ASN
267
n
246
ASN
267
A
PRO
268
n
247
PRO
268
A
TYR
269
n
248
TYR
269
A
TYR
270
n
249
TYR
270
A
ASN
271
n
250
ASN
271
A
VAL
272
n
251
VAL
272
A
GLU
273
n
252
GLU
273
A
LEU
274
n
253
LEU
274
A
MSE
275
n
254
MSE
275
A
THR
276
n
255
THR
276
A
ASP
277
n
256
ASP
277
A
TYR
278
n
257
TYR
278
A
ARG
279
n
258
ARG
279
A
ARG
280
n
259
ARG
280
A
ASP
281
n
260
ASP
281
A
LYS
282
n
261
LYS
282
A
GLY
283
n
262
GLY
283
A
THR
284
n
263
THR
284
A
TYR
285
n
264
TYR
285
A
GLN
286
n
265
GLN
286
A
TYR
287
n
266
TYR
287
A
ASP
288
n
267
ASP
288
A
GLN
289
n
268
GLN
289
A
ASP
290
n
269
ASP
290
A
GLN
291
n
270
GLN
291
A
ASP
292
n
271
ASP
292
A
GLY
293
n
272
GLY
293
A
ARG
294
n
273
ARG
294
A
PHE
295
n
274
PHE
295
A
PHE
296
n
275
PHE
296
A
ILE
297
n
276
ILE
297
A
ARG
298
n
277
ARG
298
A
CYS
299
n
278
CYS
299
A
SER
300
n
279
SER
300
A
ASP
301
n
280
ASP
301
A
CYS
302
n
281
CYS
302
A
ASN
303
n
282
ASN
303
A
ASP
304
n
283
ASP
304
A
PRO
305
n
284
PRO
305
A
ASP
306
n
285
ASP
306
A
THR
307
n
286
THR
307
A
GLU
308
n
287
GLU
308
A
ALA
309
n
288
ALA
309
A
ASP
310
n
289
ASP
310
A
TYR
311
n
290
TYR
311
A
TYR
312
n
291
TYR
312
A
ILE
313
n
292
ILE
313
A
VAL
314
n
293
VAL
314
A
HIS
315
n
294
HIS
315
A
PHE
316
n
295
PHE
316
A
THR
317
n
296
THR
317
A
LEU
318
n
297
LEU
318
A
ALA
319
n
298
ALA
319
A
CYS
320
n
299
CYS
320
A
ASP
321
n
300
ASP
321
A
PRO
322
n
301
PRO
322
A
LEU
323
n
302
LEU
323
A
PRO
324
n
303
PRO
324
A
ASP
325
n
304
ASP
325
A
GLY
326
n
305
GLY
326
A
SER
327
n
306
SER
327
A
VAL
328
n
307
VAL
328
A
TYR
329
n
308
TYR
329
A
LEU
330
n
309
LEU
330
A
ASN
331
n
310
ASN
331
A
GLY
332
n
311
GLY
332
A
GLU
333
n
312
GLU
333
A
LEU
334
n
313
LEU
334
A
PHE
335
n
314
PHE
335
A
ASN
336
n
315
ASN
336
A
ASN
337
n
316
ASN
337
A
VAL
338
n
317
VAL
338
A
LEU
339
n
318
LEU
339
A
ASP
340
n
319
ASP
340
A
GLU
341
n
320
GLU
341
A
LYS
342
n
321
LYS
342
A
SER
343
n
322
SER
343
A
LYS
344
n
323
LYS
344
A
MSE
345
n
324
MSE
345
A
GLY
346
n
325
GLY
346
A
TYR
347
n
326
TYR
347
A
ASN
348
n
327
ASN
348
A
PHE
349
n
328
PHE
349
A
GLU
350
n
329
GLU
350
A
THR
351
n
330
THR
351
A
LYS
352
n
331
LYS
352
A
GLN
353
n
332
GLN
353
A
TYR
354
n
333
TYR
354
A
GLU
355
n
334
GLU
355
A
LYS
356
n
335
LYS
356
A
ALA
357
n
336
ALA
357
A
VAL
358
n
337
VAL
358
A
LEU
359
n
338
LEU
359
A
LEU
360
n
339
LEU
360
A
LYS
361
n
340
LYS
361
A
GLN
362
n
341
GLN
362
A
GLY
363
n
342
GLY
363
A
SER
364
n
343
SER
364
A
TYR
365
n
344
TYR
365
A
ASN
366
n
345
ASN
366
A
TYR
367
n
346
TYR
367
A
GLN
368
n
347
GLN
368
A
TYR
369
n
348
TYR
369
A
LEU
370
n
349
LEU
370
A
PHE
371
n
350
PHE
371
A
VAL
372
n
351
VAL
372
A
PRO
373
n
352
PRO
373
A
THR
374
n
353
THR
374
A
GLY
375
n
354
GLY
375
A
SER
376
n
355
SER
376
A
SER
377
n
356
SER
377
A
VAL
378
n
357
VAL
378
A
GLY
379
n
358
GLY
379
A
GLN
380
n
359
GLN
380
A
THR
381
n
360
THR
381
A
GLY
382
n
361
GLY
382
A
PRO
383
n
362
PRO
383
A
ILE
384
n
363
ILE
384
A
GLU
385
n
364
GLU
385
A
GLY
386
n
365
GLY
386
A
ASN
387
n
366
ASN
387
A
TYR
388
n
367
TYR
388
A
TYR
389
n
368
TYR
389
A
GLN
390
n
369
GLN
390
A
THR
391
n
370
THR
391
A
GLN
392
n
371
GLN
392
A
ASN
393
n
372
ASN
393
A
GLU
394
n
373
GLU
394
A
TYR
395
n
374
TYR
395
A
SER
396
n
375
SER
396
A
ILE
397
n
376
ILE
397
A
TYR
398
n
377
TYR
398
A
VAL
399
n
378
VAL
399
A
TYR
400
n
379
TYR
400
A
TYR
401
n
380
TYR
401
A
ARG
402
n
381
ARG
402
A
PRO
403
n
382
PRO
403
A
MSE
404
n
383
MSE
404
A
GLY
405
n
384
GLY
405
A
ALA
406
n
385
ALA
406
A
ARG
407
n
386
ARG
407
A
TYR
408
n
387
TYR
408
A
ASP
409
n
388
ASP
409
A
ARG
410
n
389
ARG
410
A
LEU
411
n
390
LEU
411
A
ILE
412
n
391
ILE
412
A
GLY
413
n
392
GLY
413
A
VAL
414
n
393
VAL
414
A
THR
415
n
394
THR
415
A
THR
416
n
395
THR
416
A
VAL
417
n
396
VAL
417
A
ARG
418
n
397
ARG
418
A
ASN
419
n
398
ASN
419
A
n
399
420
A
n
400
421
A
n
401
422
A
n
402
423
A
n
403
424
A
0.6944
0.1740
-0.5056
0.1464
-0.1843
0.4016
-0.0129
0.1136
-0.0159
0.0212
0.0023
-0.0101
-0.0061
-0.0696
0.0106
0.0089
-0.0051
0.0030
0.0269
0.0023
0.0103
refined
0.9494
24.4776
8.7129
X-RAY DIFFRACTION
A
23
A
419
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
2
dimeric
4450
-50
33380
A
GLU
226
A
OE2
GLU
205
1_555
A
MG
507
H
MG
MG
1_555
A
HOH
832
I
O
HOH
1_555
78.5
A
GLU
226
A
OE2
GLU
205
1_555
A
MG
507
H
MG
MG
1_555
A
HOH
854
I
O
HOH
1_555
159.7
A
HOH
832
I
O
HOH
1_555
A
MG
507
H
MG
MG
1_555
A
HOH
854
I
O
HOH
1_555
83.6
A
GLU
226
A
OE2
GLU
205
1_555
A
MG
507
H
MG
MG
1_555
A
HOH
855
I
O
HOH
1_555
86.7
A
HOH
832
I
O
HOH
1_555
A
MG
507
H
MG
MG
1_555
A
HOH
855
I
O
HOH
1_555
79.2
A
HOH
854
I
O
HOH
1_555
A
MG
507
H
MG
MG
1_555
A
HOH
855
I
O
HOH
1_555
99.1
A
GLU
226
A
OE2
GLU
205
1_555
A
MG
507
H
MG
MG
1_555
A
HOH
857
I
O
HOH
1_555
92.7
A
HOH
832
I
O
HOH
1_555
A
MG
507
H
MG
MG
1_555
A
HOH
857
I
O
HOH
1_555
91.7
A
HOH
854
I
O
HOH
1_555
A
MG
507
H
MG
MG
1_555
A
HOH
857
I
O
HOH
1_555
78.5
A
HOH
855
I
O
HOH
1_555
A
MG
507
H
MG
MG
1_555
A
HOH
857
I
O
HOH
1_555
170.8
A
GLU
244
A
OE1
GLU
223
1_555
A
MG
506
G
MG
MG
1_555
A
ASP
290
A
OD2
ASP
269
1_555
81.0
A
GLU
244
A
OE1
GLU
223
1_555
A
MG
506
G
MG
MG
1_555
A
ASP
290
A
OD1
ASP
269
1_555
80.8
A
ASP
290
A
OD2
ASP
269
1_555
A
MG
506
G
MG
MG
1_555
A
ASP
290
A
OD1
ASP
269
1_555
53.1
A
GLU
244
A
OE1
GLU
223
1_555
A
MG
506
G
MG
MG
1_555
A
ASP
292
A
OD1
ASP
271
1_555
165.6
A
ASP
290
A
OD2
ASP
269
1_555
A
MG
506
G
MG
MG
1_555
A
ASP
292
A
OD1
ASP
271
1_555
99.3
A
ASP
290
A
OD1
ASP
269
1_555
A
MG
506
G
MG
MG
1_555
A
ASP
292
A
OD1
ASP
271
1_555
87.9
A
GLU
244
A
OE1
GLU
223
1_555
A
MG
506
G
MG
MG
1_555
A
GLN
392
A
O
GLN
371
1_555
92.2
A
ASP
290
A
OD2
ASP
269
1_555
A
MG
506
G
MG
MG
1_555
A
GLN
392
A
O
GLN
371
1_555
166.3
A
ASP
290
A
OD1
ASP
269
1_555
A
MG
506
G
MG
MG
1_555
A
GLN
392
A
O
GLN
371
1_555
137.8
A
ASP
292
A
OD1
ASP
271
1_555
A
MG
506
G
MG
MG
1_555
A
GLN
392
A
O
GLN
371
1_555
90.2
A
GLU
244
A
OE1
GLU
223
1_555
A
MG
506
G
MG
MG
1_555
A
GLN
392
A
OE1
GLN
371
1_555
98.0
A
ASP
290
A
OD2
ASP
269
1_555
A
MG
506
G
MG
MG
1_555
A
GLN
392
A
OE1
GLN
371
1_555
117.6
A
ASP
290
A
OD1
ASP
269
1_555
A
MG
506
G
MG
MG
1_555
A
GLN
392
A
OE1
GLN
371
1_555
65.1
A
ASP
292
A
OD1
ASP
271
1_555
A
MG
506
G
MG
MG
1_555
A
GLN
392
A
OE1
GLN
371
1_555
68.9
A
GLN
392
A
O
GLN
371
1_555
A
MG
506
G
MG
MG
1_555
A
GLN
392
A
OE1
GLN
371
1_555
75.0
A
GLU
244
A
OE1
GLU
223
1_555
A
MG
506
G
MG
MG
1_555
A
HOH
759
I
O
HOH
1_555
93.2
A
ASP
290
A
OD2
ASP
269
1_555
A
MG
506
G
MG
MG
1_555
A
HOH
759
I
O
HOH
1_555
85.3
A
ASP
290
A
OD1
ASP
269
1_555
A
MG
506
G
MG
MG
1_555
A
HOH
759
I
O
HOH
1_555
138.4
A
ASP
292
A
OD1
ASP
271
1_555
A
MG
506
G
MG
MG
1_555
A
HOH
759
I
O
HOH
1_555
101.2
A
GLN
392
A
O
GLN
371
1_555
A
MG
506
G
MG
MG
1_555
A
HOH
759
I
O
HOH
1_555
83.2
A
GLN
392
A
OE1
GLN
371
1_555
A
MG
506
G
MG
MG
1_555
A
HOH
759
I
O
HOH
1_555
155.7
A
MSE
96
SELENOMETHIONINE
A
MSE
75
MET
A
MSE
222
SELENOMETHIONINE
A
MSE
201
MET
A
MSE
248
SELENOMETHIONINE
A
MSE
227
MET
A
MSE
258
SELENOMETHIONINE
A
MSE
237
MET
A
MSE
275
SELENOMETHIONINE
A
MSE
254
MET
A
MSE
345
SELENOMETHIONINE
A
MSE
324
MET
A
MSE
404
SELENOMETHIONINE
A
MSE
383
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASP
29
A
N
ASP
8
A
O
THR
153
A
O
THR
132
A
O
VAL
159
A
O
VAL
138
A
N
ILE
52
A
N
ILE
31
A
N
ASP
29
A
N
ASP
8
A
O
THR
153
A
O
THR
132
A
O
ALA
154
A
O
ALA
133
A
N
ILE
139
A
N
ILE
118
A
O
ASN
136
A
O
ASN
115
A
N
CYS
81
A
N
CYS
60
A
N
TYR
76
A
N
TYR
55
A
O
THR
102
A
O
THR
81
A
N
LYS
41
A
N
LYS
20
A
O
GLU
61
A
O
GLU
40
A
N
ILE
62
A
N
ILE
41
A
O
LEU
122
A
O
LEU
101
A
O
ASN
119
A
O
ASN
98
A
N
ALA
108
A
N
ALA
87
A
N
ASN
97
A
N
ASN
76
A
O
GLN
130
A
O
GLN
109
A
N
ASN
164
A
N
ASN
143
A
O
ASN
189
A
O
ASN
168
A
N
PHE
186
A
N
PHE
165
A
O
TYR
231
A
O
TYR
210
A
O
GLN
228
A
O
GLN
207
A
N
LEU
225
A
N
LEU
204
A
N
ASN
164
A
N
ASN
143
A
O
ASN
189
A
O
ASN
168
A
N
GLN
182
A
N
GLN
161
A
O
PHE
239
A
O
PHE
218
A
N
PHE
205
A
N
PHE
184
A
O
TYR
398
A
O
TYR
377
A
N
VAL
399
A
N
VAL
378
A
O
GLY
413
A
O
GLY
392
A
N
MSE
248
A
N
MSE
227
A
O
TYR
365
A
O
TYR
344
A
O
SER
364
A
O
SER
343
A
N
PHE
296
A
N
PHE
275
A
N
MSE
248
A
N
MSE
227
A
O
TYR
365
A
O
TYR
344
A
O
GLN
368
A
O
GLN
347
A
N
ASN
331
A
N
ASN
310
A
N
SER
264
A
N
SER
243
A
O
ASN
271
A
O
ASN
250
A
N
VAL
272
A
N
VAL
251
A
O
HIS
315
A
O
HIS
294
A
N
VAL
314
A
N
VAL
293
A
O
VAL
358
A
O
VAL
337
A
O
GLN
353
A
O
GLN
332
A
N
ASN
348
A
N
ASN
327
1
A
GLY
0
A
GLY
1
1
Y
1
A
GLU
420
A
GLU
399
1
Y
1
A
MSE
421
A
MSE
400
1
Y
1
A
GLN
422
A
GLN
401
1
Y
1
A
VAL
423
A
VAL
402
1
Y
1
A
PHE
424
A
PHE
403
1
Y
1
-11.95
1.80
110.60
98.65
A
A
A
N
CA
CB
MSE
MSE
MSE
248
248
248
N
1
A
GLN
179
-118.31
-95.05
1
A
GLN
179
-117.75
-97.24
1
A
TYR
231
-119.92
65.08
1
A
ASN
262
-175.78
148.79
1
A
LYS
282
-104.36
43.15
138.430
41.6185
18.520
0.3500
0.0000
0.0000
0.3500
-0.0000
-0.6900
0.9620
0.9330
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. GLYCEROL (GOL), TRIS-BUFFER (TRS), MG and CL IONS FROM THE CRYOPROTECTANT AND FROM THE CRYSTALLIZATION CONDITION HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. 4. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU R CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 5. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 6. SOLVENT ATOMS WERE EXCLUDED FROM TLS REFINEMENT.
0.2130
0.1589
0.1617
2.3000
25.203
1512
31457
4.8000
98.2500
1.000
0.200
9.4260
0.1200
RANDOM
1
THROUGHOUT
0.000
MAD
0.1820
0.1750
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD WITH PHASES
BABINET MODEL WITH MASK
2.3000
25.203
277
3528
26
0
3225
0.013
0.020
3447
0.001
0.020
3095
1.618
1.951
4710
0.794
3.001
7126
6.645
5.000
433
37.317
25.303
198
14.128
15.000
528
18.847
15.000
16
0.094
0.200
499
0.006
0.020
4096
0.001
0.020
870
4.988
6.933
1633
4.943
6.927
1630
6.320
12.966
2048
0.2590
0.2260
2.3600
45
2250
2295
20
99.3500
2.30
25.203
4R7F
31486
31486
0.185
1
10.400
8.800
98.500
2.300
2.360
1.8
20925
2303
1.256
1
9.100
99.600
2.360
2.420
2.1
20118
2242
1.102
1
9.000
99.700
2.420
2.490
2.4
19670
2201
0.956
1
8.900
99.700
2.490
2.570
2.7
17444
2143
0.802
1
8.100
99.700
2.570
2.660
2.9
14623
1883
0.679
1
7.800
91.900
2.660
2.750
4.0
18299
2003
0.571
1
9.100
99.600
2.750
2.850
5.0
18757
1961
0.463
1
9.600
99.800
2.850
2.970
6.0
17506
1864
0.381
1
9.400
99.800
2.970
3.100
8.1
16620
1798
0.276
1
9.200
99.800
3.100
3.250
11.3
15690
1727
0.191
1
9.100
99.900
3.250
3.430
13.0
14874
1652
0.159
1
9.000
100.000
3.430
3.640
15.7
12766
1566
0.119
1
8.200
99.900
3.640
3.890
18.5
9971
1332
0.091
1
7.500
90.900
3.890
4.200
24.4
12345
1375
0.075
1
9.000
99.300
4.200
4.600
27.2
12017
1292
0.068
1
9.300
100.000
4.600
5.140
26.6
10714
1162
0.067
1
9.200
100.000
5.140
5.940
22.4
8886
1054
0.076
1
8.400
100.000
5.940
7.270
18.0
6476
855
0.091
1
7.600
96.000
7.270
10.290
27.3
5919
666
0.068
1
8.900
93.100
10.290
25.203
31.2
3543
407
0.056
1
8.700
93.300
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
program
data scaling
Phil Evans
pre@mrc-lmb.cam.ac.uk
SCALA
package
3.3.20
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.7.0032
data reduction
MOSFLM
Crystal structure of a hypothetical protein (PARMER_01801) from Parabacteroides merdae ATCC 43184 at 2.30 A resolution
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
6
N
N
A
SER
91
A
SER
70
HELX_P
A
TYR
95
A
TYR
74
1
1
5
A
TYR
197
A
TYR
176
HELX_P
A
ASP
201
A
ASP
180
1
2
5
A
ASN
234
A
ASN
213
HELX_P
A
ASN
236
A
ASN
215
5
3
3
A
ASP
304
A
ASP
283
HELX_P
A
ALA
309
A
ALA
288
1
4
6
A
GLY
332
A
GLY
311
HELX_P
A
ASN
336
A
ASN
315
5
5
5
disulf
2.084
A
CYS
299
A
SG
CYS
278
1_555
A
CYS
302
A
SG
CYS
281
1_555
covale
1.333
both
A
TYR
95
A
C
TYR
74
1_555
A
MSE
96
A
N
MSE
75
1_555
covale
1.324
both
A
MSE
96
A
C
MSE
75
1_555
A
ASN
97
A
N
ASN
76
1_555
covale
1.322
both
A
A
PRO
221
A
C
PRO
200
1_555
A
MSE
222
A
N
MSE
201
1_555
covale
1.331
both
C
A
PRO
221
A
C
PRO
200
1_555
A
MSE
222
A
N
MSE
201
1_555
covale
1.338
both
A
A
MSE
222
A
C
MSE
201
1_555
A
SER
223
A
N
SER
202
1_555
covale
1.333
both
C
A
MSE
222
A
C
MSE
201
1_555
A
SER
223
A
N
SER
202
1_555
covale
1.328
both
A
ARG
247
A
C
ARG
226
1_555
A
MSE
248
A
N
MSE
227
1_555
covale
1.330
both
A
MSE
248
A
C
MSE
227
1_555
A
GLU
249
A
N
GLU
228
1_555
covale
1.326
both
A
GLY
257
A
C
GLY
236
1_555
A
MSE
258
A
N
MSE
237
1_555
covale
1.326
both
A
MSE
258
A
C
MSE
237
1_555
A
HIS
259
A
N
HIS
238
1_555
covale
1.324
both
A
LEU
274
A
C
LEU
253
1_555
A
MSE
275
A
N
MSE
254
1_555
covale
1.322
both
A
MSE
275
A
C
MSE
254
1_555
A
THR
276
A
N
THR
255
1_555
covale
1.314
both
A
LYS
344
A
C
LYS
323
1_555
A
MSE
345
A
N
MSE
324
1_555
covale
1.320
both
A
MSE
345
A
C
MSE
324
1_555
A
GLY
346
A
N
GLY
325
1_555
covale
1.335
both
A
PRO
403
A
C
PRO
382
1_555
A
MSE
404
A
N
MSE
383
1_555
covale
1.326
both
A
MSE
404
A
C
MSE
383
1_555
A
GLY
405
A
N
GLY
384
1_555
metalc
2.379
A
GLU
226
A
OE2
GLU
205
1_555
A
MG
507
H
MG
MG
1_555
metalc
2.361
A
GLU
244
A
OE1
GLU
223
1_555
A
MG
506
G
MG
MG
1_555
metalc
2.407
A
ASP
290
A
OD2
ASP
269
1_555
A
MG
506
G
MG
MG
1_555
metalc
2.476
A
ASP
290
A
OD1
ASP
269
1_555
A
MG
506
G
MG
MG
1_555
metalc
2.200
A
ASP
292
A
OD1
ASP
271
1_555
A
MG
506
G
MG
MG
1_555
metalc
2.155
A
GLN
392
A
O
GLN
371
1_555
A
MG
506
G
MG
MG
1_555
metalc
2.984
A
GLN
392
A
OE1
GLN
371
1_555
A
MG
506
G
MG
MG
1_555
metalc
2.388
A
MG
506
G
MG
MG
1_555
A
HOH
759
I
O
HOH
1_555
metalc
2.193
A
MG
507
H
MG
MG
1_555
A
HOH
832
I
O
HOH
1_555
metalc
2.228
A
MG
507
H
MG
MG
1_555
A
HOH
854
I
O
HOH
1_555
metalc
2.298
A
MG
507
H
MG
MG
1_555
A
HOH
855
I
O
HOH
1_555
metalc
2.255
A
MG
507
H
MG
MG
1_555
A
HOH
857
I
O
HOH
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Three domains have an Immunoglobulin-like beta-sandwich fold, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION
A
LEU
124
A
LEU
103
1
A
PRO
125
A
PRO
104
-6.10
A
ASN
267
A
ASN
246
1
A
PRO
268
A
PRO
247
7.84
A7AEG3_9PORP
UNP
1
23
A7AEG3
QVKFFTDVNSKQIKTLQVKVAGELISEPYIALGGEEQIEINFDGLGSGYTRYAYNVVHCNADWTQSQLSPIEYMNGFQGT
TIDDFANSIGTTTQYSNYRLLLPNDDVQFKVSGNYAIQVYNEDTPDQIIFTACFSVVEPVVNISASVSGNTDIDTNQSHQ
QVSFNINNKNFPITYPQTDLKIFVYQDNRRDNAVTDLQPMSILENQISYTYNRNLIFPAGNEYRRMEFLSNKYNGMHVEN
ISFHNPYYNVELMTDYRRDKGTYQYDQDQDGRFFIRCSDCNDPDTEADYYIVHFTLACDPLPDGSVYLNGELFNNVLDEK
SKMGYNFETKQYEKAVLLKQGSYNYQYLFVPTGSSVGQTGPIEGNYYQTQNEYSIYVYYRPMGARYDRLIGVTTVRNEMQ
VF
23
424
4R7F
23
424
A7AEG3
A
1
2
403
1
expression tag
GLY
0
4R7F
A
A7AEG3
UNP
1
3
5
4
2
4
3
3
3
3
5
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ASP
29
A
ASP
8
A
VAL
30
A
VAL
9
A
ILE
150
A
ILE
129
A
VAL
159
A
VAL
138
A
TYR
51
A
TYR
30
A
ALA
53
A
ALA
32
A
ASP
29
A
ASP
8
A
VAL
30
A
VAL
9
A
ILE
150
A
ILE
129
A
VAL
159
A
VAL
138
A
GLY
135
A
GLY
114
A
ASN
143
A
ASN
122
A
TYR
74
A
TYR
53
A
CYS
81
A
CYS
60
A
THR
102
A
THR
81
A
THR
103
A
THR
82
A
ILE
35
A
ILE
14
A
VAL
42
A
VAL
21
A
ILE
60
A
ILE
39
A
LEU
67
A
LEU
46
A
TYR
117
A
TYR
96
A
LEU
124
A
LEU
103
A
PHE
107
A
PHE
86
A
ASN
109
A
ASN
88
A
MSE
96
A
MSE
75
A
ASN
97
A
ASN
76
A
GLN
130
A
GLN
109
A
PHE
131
A
PHE
110
A
ASN
164
A
ASN
143
A
SER
170
A
SER
149
A
HIS
181
A
HIS
160
A
ASN
189
A
ASN
168
A
GLN
228
A
GLN
207
A
TYR
231
A
TYR
210
A
SER
223
A
SER
202
A
LEU
225
A
LEU
204
A
ASN
164
A
ASN
143
A
SER
170
A
SER
149
A
HIS
181
A
HIS
160
A
ASN
189
A
ASN
168
A
ILE
238
A
ILE
217
A
PRO
240
A
PRO
219
A
LEU
202
A
LEU
181
A
GLN
208
A
GLN
187
A
GLU
394
A
GLU
373
A
TYR
401
A
TYR
380
A
ARG
410
A
ARG
389
A
ARG
418
A
ARG
397
A
ARG
246
A
ARG
225
A
GLU
249
A
GLU
228
A
GLY
363
A
GLY
342
A
PRO
373
A
PRO
352
A
PHE
295
A
PHE
274
A
ILE
297
A
ILE
276
A
ARG
246
A
ARG
225
A
GLU
249
A
GLU
228
A
GLY
363
A
GLY
342
A
PRO
373
A
PRO
352
A
GLY
326
A
GLY
305
A
ASN
331
A
ASN
310
A
VAL
260
A
VAL
239
A
HIS
266
A
HIS
245
A
TYR
269
A
TYR
248
A
LEU
274
A
LEU
253
A
TYR
311
A
TYR
290
A
ALA
319
A
ALA
298
A
GLN
353
A
GLN
332
A
LYS
361
A
LYS
340
A
GLY
346
A
GLY
325
A
ASN
348
A
ASN
327
BINDING SITE FOR RESIDUE GOL A 501
A
GOL
501
Software
9
BINDING SITE FOR RESIDUE TRS A 502
A
TRS
502
Software
6
BINDING SITE FOR RESIDUE TRS A 503
A
TRS
503
Software
8
BINDING SITE FOR RESIDUE CL A 504
A
CL
504
Software
3
BINDING SITE FOR RESIDUE CL A 505
A
CL
505
Software
4
BINDING SITE FOR RESIDUE MG A 506
A
MG
506
Software
5
BINDING SITE FOR RESIDUE MG A 507
A
MG
507
Software
5
A
VAL
162
A
VAL
141
9
1_555
A
ASN
164
A
ASN
143
9
1_555
A
ASP
174
A
ASP
153
9
7_555
A
ASN
189
A
ASN
168
9
1_555
A
ASN
190
A
ASN
169
9
1_555
A
LYS
191
A
LYS
170
9
1_555
A
ASN
192
A
ASN
171
9
1_555
A
PHE
193
A
PHE
172
9
1_555
A
TYR
233
A
TYR
212
9
7_555
A
ARG
212
A
ARG
191
6
1_555
A
ASN
337
A
ASN
316
6
1_555
A
VAL
338
A
VAL
317
6
1_555
A
LEU
339
A
LEU
318
6
1_555
A
HOH
612
I
HOH
6
1_555
A
HOH
827
I
HOH
6
1_555
A
TRP
85
A
TRP
64
8
1_555
A
TYR
207
A
TYR
186
8
1_555
A
ASN
210
A
ASN
189
8
1_555
A
ARG
212
A
ARG
191
8
1_555
A
TYR
398
A
TYR
377
8
1_555
A
HOH
688
I
HOH
8
1_555
A
HOH
689
I
HOH
8
1_555
A
HOH
805
I
HOH
8
1_555
A
ILE
204
A
ILE
183
3
1_555
A
ASP
218
A
ASP
197
3
1_555
A
LEU
219
A
LEU
198
3
1_555
A
ASN
227
A
ASN
206
4
4_455
A
ALA
357
A
ALA
336
4
1_555
A
HOH
749
I
HOH
4
4_455
A
HOH
859
I
HOH
4
1_555
A
GLU
244
A
GLU
223
5
1_555
A
ASP
290
A
ASP
269
5
1_555
A
ASP
292
A
ASP
271
5
1_555
A
GLN
392
A
GLN
371
5
1_555
A
HOH
759
I
HOH
5
1_555
A
GLU
226
A
GLU
205
5
1_555
A
HOH
832
I
HOH
5
1_555
A
HOH
854
I
HOH
5
1_555
A
HOH
855
I
HOH
5
1_555
A
HOH
857
I
HOH
5
1_555
96
P 43 21 2