0.010356 0.000000 0.000000 -0.000000 0.010356 0.000000 0.000000 -0.000000 0.006713 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 96.567 96.567 148.970 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C4 H12 N O3 1 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a hypothetical protein (PARMER_01801) from Parabacteroides merdae ATCC 43184 at 2.30 A resolution 10.2210/pdb4r7f/pdb pdb_00004r7f 100 1 Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing) PIXEL 2014-05-21 DECTRIS PILATUS 6M single crystal Si(111) bent MAD M x-ray 1 0.91837 1.0 0.97941 1.0 0.97898 1.0 BL11-1 SSRL 0.91837,0.97941,0.97898 SYNCHROTRON SSRL BEAMLINE BL11-1 46792.125 Uncharacterized protein 1 man polymer 92.094 GLYCEROL 1 syn non-polymer 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 2 syn non-polymer 35.453 CHLORIDE ION 2 syn non-polymer 24.305 MAGNESIUM ION 2 syn non-polymer 18.015 water 277 nat water no yes GQVKFFTDVNSKQIKTLQVKVAGELISEPYIALGGEEQIEINFDGLGSGYTRYAYNVVHCNADWTQSQLSPIEY(MSE)N GFQGTTIDDFANSIGTTTQYSNYRLLLPNDDVQFKVSGNYAIQVYNEDTPDQIIFTACFSVVEPVVNISASVSGNTDIDT NQSHQQVSFNINNKNFPITYPQTDLKIFVYQDNRRDNAVTDLQP(MSE)SILENQISYTYNRNLIFPAGNEYRR(MSE)E FLSNKYNG(MSE)HVENISFHNPYYNVEL(MSE)TDYRRDKGTYQYDQDQDGRFFIRCSDCNDPDTEADYYIVHFTLACD PLPDGSVYLNGELFNNVLDEKSK(MSE)GYNFETKQYEKAVLLKQGSYNYQYLFVPTGSSVGQTGPIEGNYYQTQNEYSI YVYYRP(MSE)GARYDRLIGVTTVRNE(MSE)QVF GQVKFFTDVNSKQIKTLQVKVAGELISEPYIALGGEEQIEINFDGLGSGYTRYAYNVVHCNADWTQSQLSPIEYMNGFQG TTIDDFANSIGTTTQYSNYRLLLPNDDVQFKVSGNYAIQVYNEDTPDQIIFTACFSVVEPVVNISASVSGNTDIDTNQSH QQVSFNINNKNFPITYPQTDLKIFVYQDNRRDNAVTDLQPMSILENQISYTYNRNLIFPAGNEYRRMEFLSNKYNGMHVE NISFHNPYYNVELMTDYRRDKGTYQYDQDQDGRFFIRCSDCNDPDTEADYYIVHFTLACDPLPDGSVYLNGELFNNVLDE KSKMGYNFETKQYEKAVLLKQGSYNYQYLFVPTGSSVGQTGPIEGNYYQTQNEYSIYVYYRPMGARYDRLIGVTTVRNEM QVF A JCSG-419702 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 43184 sample PARMER_01801 411477 Parabacteroides merdae 562 Escherichia Coli PB1 Plasmid SpeedET 1 3.71 66.86 VAPOR DIFFUSION, SITTING DROP 7.0 0.2M magnesium chloride, 2.5M sodium chloride, 0.1M TRIS pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 Joint Center for Structural Genomics JCSG PSI:Biology software citation_author database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Refinement description Database references Database references Derived calculations 1 0 2014-12-17 1 1 2017-11-22 1 2 2018-01-24 1 3 2023-02-01 _software.classification _software.name _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2014-08-27 REL REL GOL GLYCEROL TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL CL CHLORIDE ION MG MAGNESIUM ION HOH water THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 23-424 OF THE TARGET SEQUENCE. GOL 420 2 GOL GOL 501 A TRS 421 3 TRS TRS 502 A TRS 422 3 TRS TRS 503 A CL 423 4 CL CL 504 A CL 424 4 CL CL 505 A MG 425 5 MG MG 506 A MG 426 5 MG MG 507 A HOH 427 6 HOH HOH 601 A HOH 428 6 HOH HOH 602 A HOH 429 6 HOH HOH 603 A HOH 430 6 HOH HOH 604 A HOH 431 6 HOH HOH 605 A HOH 432 6 HOH HOH 606 A HOH 433 6 HOH HOH 607 A HOH 434 6 HOH HOH 608 A HOH 435 6 HOH HOH 609 A HOH 436 6 HOH HOH 610 A HOH 437 6 HOH HOH 611 A HOH 438 6 HOH HOH 612 A HOH 439 6 HOH HOH 613 A HOH 440 6 HOH HOH 614 A HOH 441 6 HOH HOH 615 A HOH 442 6 HOH HOH 616 A HOH 443 6 HOH HOH 617 A HOH 444 6 HOH HOH 618 A HOH 445 6 HOH HOH 619 A HOH 446 6 HOH HOH 620 A HOH 447 6 HOH HOH 621 A HOH 448 6 HOH HOH 622 A HOH 449 6 HOH HOH 623 A HOH 450 6 HOH HOH 624 A HOH 451 6 HOH HOH 625 A HOH 452 6 HOH HOH 626 A HOH 453 6 HOH HOH 627 A HOH 454 6 HOH HOH 628 A HOH 455 6 HOH HOH 629 A HOH 456 6 HOH HOH 630 A HOH 457 6 HOH HOH 631 A HOH 458 6 HOH HOH 632 A HOH 459 6 HOH HOH 633 A HOH 460 6 HOH HOH 634 A HOH 461 6 HOH HOH 635 A HOH 462 6 HOH HOH 636 A HOH 463 6 HOH HOH 637 A HOH 464 6 HOH HOH 638 A HOH 465 6 HOH HOH 639 A HOH 466 6 HOH HOH 640 A HOH 467 6 HOH HOH 641 A HOH 468 6 HOH HOH 642 A HOH 469 6 HOH HOH 643 A HOH 470 6 HOH HOH 644 A HOH 471 6 HOH HOH 645 A HOH 472 6 HOH HOH 646 A HOH 473 6 HOH HOH 647 A HOH 474 6 HOH HOH 648 A HOH 475 6 HOH HOH 649 A HOH 476 6 HOH HOH 650 A HOH 477 6 HOH HOH 651 A HOH 478 6 HOH HOH 652 A HOH 479 6 HOH HOH 653 A HOH 480 6 HOH HOH 654 A HOH 481 6 HOH HOH 655 A HOH 482 6 HOH HOH 656 A HOH 483 6 HOH HOH 657 A HOH 484 6 HOH HOH 658 A HOH 485 6 HOH HOH 659 A HOH 486 6 HOH HOH 660 A HOH 487 6 HOH HOH 661 A HOH 488 6 HOH HOH 662 A HOH 489 6 HOH HOH 663 A HOH 490 6 HOH HOH 664 A HOH 491 6 HOH HOH 665 A HOH 492 6 HOH HOH 666 A HOH 493 6 HOH HOH 667 A HOH 494 6 HOH HOH 668 A HOH 495 6 HOH HOH 669 A HOH 496 6 HOH HOH 670 A HOH 497 6 HOH HOH 671 A HOH 498 6 HOH HOH 672 A HOH 499 6 HOH HOH 673 A HOH 500 6 HOH HOH 674 A HOH 501 6 HOH HOH 675 A HOH 502 6 HOH HOH 676 A HOH 503 6 HOH HOH 677 A HOH 504 6 HOH HOH 678 A HOH 505 6 HOH HOH 679 A HOH 506 6 HOH HOH 680 A HOH 507 6 HOH HOH 681 A HOH 508 6 HOH HOH 682 A HOH 509 6 HOH HOH 683 A HOH 510 6 HOH HOH 684 A HOH 511 6 HOH HOH 685 A HOH 512 6 HOH HOH 686 A HOH 513 6 HOH HOH 687 A HOH 514 6 HOH HOH 688 A HOH 515 6 HOH HOH 689 A HOH 516 6 HOH HOH 690 A HOH 517 6 HOH HOH 691 A HOH 518 6 HOH HOH 692 A HOH 519 6 HOH HOH 693 A HOH 520 6 HOH HOH 694 A HOH 521 6 HOH HOH 695 A HOH 522 6 HOH HOH 696 A HOH 523 6 HOH HOH 697 A HOH 524 6 HOH HOH 698 A HOH 525 6 HOH HOH 699 A HOH 526 6 HOH HOH 700 A HOH 527 6 HOH HOH 701 A HOH 528 6 HOH HOH 702 A HOH 529 6 HOH HOH 703 A HOH 530 6 HOH HOH 704 A HOH 531 6 HOH HOH 705 A HOH 532 6 HOH HOH 706 A HOH 533 6 HOH HOH 707 A HOH 534 6 HOH HOH 708 A HOH 535 6 HOH HOH 709 A HOH 536 6 HOH HOH 710 A HOH 537 6 HOH HOH 711 A HOH 538 6 HOH HOH 712 A HOH 539 6 HOH HOH 713 A HOH 540 6 HOH HOH 714 A HOH 541 6 HOH HOH 715 A HOH 542 6 HOH HOH 716 A HOH 543 6 HOH HOH 717 A HOH 544 6 HOH HOH 718 A HOH 545 6 HOH HOH 719 A HOH 546 6 HOH HOH 720 A HOH 547 6 HOH HOH 721 A HOH 548 6 HOH HOH 722 A HOH 549 6 HOH HOH 723 A HOH 550 6 HOH HOH 724 A HOH 551 6 HOH HOH 725 A HOH 552 6 HOH HOH 726 A HOH 553 6 HOH HOH 727 A HOH 554 6 HOH HOH 728 A HOH 555 6 HOH HOH 729 A HOH 556 6 HOH HOH 730 A HOH 557 6 HOH HOH 731 A HOH 558 6 HOH HOH 732 A HOH 559 6 HOH HOH 733 A HOH 560 6 HOH HOH 734 A HOH 561 6 HOH HOH 735 A HOH 562 6 HOH HOH 736 A HOH 563 6 HOH HOH 737 A HOH 564 6 HOH HOH 738 A HOH 565 6 HOH HOH 739 A HOH 566 6 HOH HOH 740 A HOH 567 6 HOH HOH 741 A HOH 568 6 HOH HOH 742 A HOH 569 6 HOH HOH 743 A HOH 570 6 HOH HOH 744 A HOH 571 6 HOH HOH 745 A HOH 572 6 HOH HOH 746 A HOH 573 6 HOH HOH 747 A HOH 574 6 HOH HOH 748 A HOH 575 6 HOH HOH 749 A HOH 576 6 HOH HOH 750 A HOH 577 6 HOH HOH 751 A HOH 578 6 HOH HOH 752 A HOH 579 6 HOH HOH 753 A HOH 580 6 HOH HOH 754 A HOH 581 6 HOH HOH 755 A HOH 582 6 HOH HOH 756 A HOH 583 6 HOH HOH 757 A HOH 584 6 HOH HOH 758 A HOH 585 6 HOH HOH 759 A HOH 586 6 HOH HOH 760 A HOH 587 6 HOH HOH 761 A HOH 588 6 HOH HOH 762 A HOH 589 6 HOH HOH 763 A HOH 590 6 HOH HOH 764 A HOH 591 6 HOH HOH 765 A HOH 592 6 HOH HOH 766 A HOH 593 6 HOH HOH 767 A HOH 594 6 HOH HOH 768 A HOH 595 6 HOH HOH 769 A HOH 596 6 HOH HOH 770 A HOH 597 6 HOH HOH 771 A HOH 598 6 HOH HOH 772 A HOH 599 6 HOH HOH 773 A HOH 600 6 HOH HOH 774 A HOH 601 6 HOH HOH 775 A HOH 602 6 HOH HOH 776 A HOH 603 6 HOH HOH 777 A HOH 604 6 HOH HOH 778 A HOH 605 6 HOH HOH 779 A HOH 606 6 HOH HOH 780 A HOH 607 6 HOH HOH 781 A HOH 608 6 HOH HOH 782 A HOH 609 6 HOH HOH 783 A HOH 610 6 HOH HOH 784 A HOH 611 6 HOH HOH 785 A HOH 612 6 HOH HOH 786 A HOH 613 6 HOH HOH 787 A HOH 614 6 HOH HOH 788 A HOH 615 6 HOH HOH 789 A HOH 616 6 HOH HOH 790 A HOH 617 6 HOH HOH 791 A HOH 618 6 HOH HOH 792 A HOH 619 6 HOH HOH 793 A HOH 620 6 HOH HOH 794 A HOH 621 6 HOH HOH 795 A HOH 622 6 HOH HOH 796 A HOH 623 6 HOH HOH 797 A HOH 624 6 HOH HOH 798 A HOH 625 6 HOH HOH 799 A HOH 626 6 HOH HOH 800 A HOH 627 6 HOH HOH 801 A HOH 628 6 HOH HOH 802 A HOH 629 6 HOH HOH 803 A HOH 630 6 HOH HOH 804 A HOH 631 6 HOH HOH 805 A HOH 632 6 HOH HOH 806 A HOH 633 6 HOH HOH 807 A HOH 634 6 HOH HOH 808 A HOH 635 6 HOH HOH 809 A HOH 636 6 HOH HOH 810 A HOH 637 6 HOH HOH 811 A HOH 638 6 HOH HOH 812 A HOH 639 6 HOH HOH 813 A HOH 640 6 HOH HOH 814 A HOH 641 6 HOH HOH 815 A HOH 642 6 HOH HOH 816 A HOH 643 6 HOH HOH 817 A HOH 644 6 HOH HOH 818 A HOH 645 6 HOH HOH 819 A HOH 646 6 HOH HOH 820 A HOH 647 6 HOH HOH 821 A HOH 648 6 HOH HOH 822 A HOH 649 6 HOH HOH 823 A HOH 650 6 HOH HOH 824 A HOH 651 6 HOH HOH 825 A HOH 652 6 HOH HOH 826 A HOH 653 6 HOH HOH 827 A HOH 654 6 HOH HOH 828 A HOH 655 6 HOH HOH 829 A HOH 656 6 HOH HOH 830 A HOH 657 6 HOH HOH 831 A HOH 658 6 HOH HOH 832 A HOH 659 6 HOH HOH 833 A HOH 660 6 HOH HOH 834 A HOH 661 6 HOH HOH 835 A HOH 662 6 HOH HOH 836 A HOH 663 6 HOH HOH 837 A HOH 664 6 HOH HOH 838 A HOH 665 6 HOH HOH 839 A HOH 666 6 HOH HOH 840 A HOH 667 6 HOH HOH 841 A HOH 668 6 HOH HOH 842 A HOH 669 6 HOH HOH 843 A HOH 670 6 HOH HOH 844 A HOH 671 6 HOH HOH 845 A HOH 672 6 HOH HOH 846 A HOH 673 6 HOH HOH 847 A HOH 674 6 HOH HOH 848 A HOH 675 6 HOH HOH 849 A HOH 676 6 HOH HOH 850 A HOH 677 6 HOH HOH 851 A HOH 678 6 HOH HOH 852 A HOH 679 6 HOH HOH 853 A HOH 680 6 HOH HOH 854 A HOH 681 6 HOH HOH 855 A HOH 682 6 HOH HOH 856 A HOH 683 6 HOH HOH 857 A HOH 684 6 HOH HOH 858 A HOH 685 6 HOH HOH 859 A HOH 686 6 HOH HOH 860 A HOH 687 6 HOH HOH 861 A HOH 688 6 HOH HOH 862 A HOH 689 6 HOH HOH 863 A HOH 690 6 HOH HOH 864 A HOH 691 6 HOH HOH 865 A HOH 692 6 HOH HOH 866 A HOH 693 6 HOH HOH 867 A HOH 694 6 HOH HOH 868 A HOH 695 6 HOH HOH 869 A HOH 696 6 HOH HOH 870 A HOH 697 6 HOH HOH 871 A HOH 698 6 HOH HOH 872 A HOH 699 6 HOH HOH 873 A HOH 700 6 HOH HOH 874 A HOH 701 6 HOH HOH 875 A HOH 702 6 HOH HOH 876 A HOH 703 6 HOH HOH 877 A n 1 0 A GLN 23 n 2 GLN 23 A VAL 24 n 3 VAL 24 A LYS 25 n 4 LYS 25 A PHE 26 n 5 PHE 26 A PHE 27 n 6 PHE 27 A THR 28 n 7 THR 28 A ASP 29 n 8 ASP 29 A VAL 30 n 9 VAL 30 A ASN 31 n 10 ASN 31 A SER 32 n 11 SER 32 A LYS 33 n 12 LYS 33 A GLN 34 n 13 GLN 34 A ILE 35 n 14 ILE 35 A LYS 36 n 15 LYS 36 A THR 37 n 16 THR 37 A LEU 38 n 17 LEU 38 A GLN 39 n 18 GLN 39 A VAL 40 n 19 VAL 40 A LYS 41 n 20 LYS 41 A VAL 42 n 21 VAL 42 A ALA 43 n 22 ALA 43 A GLY 44 n 23 GLY 44 A GLU 45 n 24 GLU 45 A LEU 46 n 25 LEU 46 A ILE 47 n 26 ILE 47 A SER 48 n 27 SER 48 A GLU 49 n 28 GLU 49 A PRO 50 n 29 PRO 50 A TYR 51 n 30 TYR 51 A ILE 52 n 31 ILE 52 A ALA 53 n 32 ALA 53 A LEU 54 n 33 LEU 54 A GLY 55 n 34 GLY 55 A GLY 56 n 35 GLY 56 A GLU 57 n 36 GLU 57 A GLU 58 n 37 GLU 58 A GLN 59 n 38 GLN 59 A ILE 60 n 39 ILE 60 A GLU 61 n 40 GLU 61 A ILE 62 n 41 ILE 62 A ASN 63 n 42 ASN 63 A PHE 64 n 43 PHE 64 A ASP 65 n 44 ASP 65 A GLY 66 n 45 GLY 66 A LEU 67 n 46 LEU 67 A GLY 68 n 47 GLY 68 A SER 69 n 48 SER 69 A GLY 70 n 49 GLY 70 A TYR 71 n 50 TYR 71 A THR 72 n 51 THR 72 A ARG 73 n 52 ARG 73 A TYR 74 n 53 TYR 74 A ALA 75 n 54 ALA 75 A TYR 76 n 55 TYR 76 A ASN 77 n 56 ASN 77 A VAL 78 n 57 VAL 78 A VAL 79 n 58 VAL 79 A HIS 80 n 59 HIS 80 A CYS 81 n 60 CYS 81 A ASN 82 n 61 ASN 82 A ALA 83 n 62 ALA 83 A ASP 84 n 63 ASP 84 A TRP 85 n 64 TRP 85 A THR 86 n 65 THR 86 A GLN 87 n 66 GLN 87 A SER 88 n 67 SER 88 A GLN 89 n 68 GLN 89 A LEU 90 n 69 LEU 90 A SER 91 n 70 SER 91 A PRO 92 n 71 PRO 92 A ILE 93 n 72 ILE 93 A GLU 94 n 73 GLU 94 A TYR 95 n 74 TYR 95 A MSE 96 n 75 MSE 96 A ASN 97 n 76 ASN 97 A GLY 98 n 77 GLY 98 A PHE 99 n 78 PHE 99 A GLN 100 n 79 GLN 100 A GLY 101 n 80 GLY 101 A THR 102 n 81 THR 102 A THR 103 n 82 THR 103 A ILE 104 n 83 ILE 104 A ASP 105 n 84 ASP 105 A ASP 106 n 85 ASP 106 A PHE 107 n 86 PHE 107 A ALA 108 n 87 ALA 108 A ASN 109 n 88 ASN 109 A SER 110 n 89 SER 110 A ILE 111 n 90 ILE 111 A GLY 112 n 91 GLY 112 A THR 113 n 92 THR 113 A THR 114 n 93 THR 114 A THR 115 n 94 THR 115 A GLN 116 n 95 GLN 116 A TYR 117 n 96 TYR 117 A SER 118 n 97 SER 118 A ASN 119 n 98 ASN 119 A TYR 120 n 99 TYR 120 A ARG 121 n 100 ARG 121 A LEU 122 n 101 LEU 122 A LEU 123 n 102 LEU 123 A LEU 124 n 103 LEU 124 A PRO 125 n 104 PRO 125 A ASN 126 n 105 ASN 126 A ASP 127 n 106 ASP 127 A ASP 128 n 107 ASP 128 A VAL 129 n 108 VAL 129 A GLN 130 n 109 GLN 130 A PHE 131 n 110 PHE 131 A LYS 132 n 111 LYS 132 A VAL 133 n 112 VAL 133 A SER 134 n 113 SER 134 A GLY 135 n 114 GLY 135 A ASN 136 n 115 ASN 136 A TYR 137 n 116 TYR 137 A ALA 138 n 117 ALA 138 A ILE 139 n 118 ILE 139 A GLN 140 n 119 GLN 140 A VAL 141 n 120 VAL 141 A TYR 142 n 121 TYR 142 A ASN 143 n 122 ASN 143 A GLU 144 n 123 GLU 144 A ASP 145 n 124 ASP 145 A THR 146 n 125 THR 146 A PRO 147 n 126 PRO 147 A ASP 148 n 127 ASP 148 A GLN 149 n 128 GLN 149 A ILE 150 n 129 ILE 150 A ILE 151 n 130 ILE 151 A PHE 152 n 131 PHE 152 A THR 153 n 132 THR 153 A ALA 154 n 133 ALA 154 A CYS 155 n 134 CYS 155 A PHE 156 n 135 PHE 156 A SER 157 n 136 SER 157 A VAL 158 n 137 VAL 158 A VAL 159 n 138 VAL 159 A GLU 160 n 139 GLU 160 A PRO 161 n 140 PRO 161 A VAL 162 n 141 VAL 162 A VAL 163 n 142 VAL 163 A ASN 164 n 143 ASN 164 A ILE 165 n 144 ILE 165 A SER 166 n 145 SER 166 A ALA 167 n 146 ALA 167 A SER 168 n 147 SER 168 A VAL 169 n 148 VAL 169 A SER 170 n 149 SER 170 A GLY 171 n 150 GLY 171 A ASN 172 n 151 ASN 172 A THR 173 n 152 THR 173 A ASP 174 n 153 ASP 174 A ILE 175 n 154 ILE 175 A ASP 176 n 155 ASP 176 A THR 177 n 156 THR 177 A ASN 178 n 157 ASN 178 A GLN 179 n 158 GLN 179 A SER 180 n 159 SER 180 A HIS 181 n 160 HIS 181 A GLN 182 n 161 GLN 182 A GLN 183 n 162 GLN 183 A VAL 184 n 163 VAL 184 A SER 185 n 164 SER 185 A PHE 186 n 165 PHE 186 A ASN 187 n 166 ASN 187 A ILE 188 n 167 ILE 188 A ASN 189 n 168 ASN 189 A ASN 190 n 169 ASN 190 A LYS 191 n 170 LYS 191 A ASN 192 n 171 ASN 192 A PHE 193 n 172 PHE 193 A PRO 194 n 173 PRO 194 A ILE 195 n 174 ILE 195 A THR 196 n 175 THR 196 A TYR 197 n 176 TYR 197 A PRO 198 n 177 PRO 198 A GLN 199 n 178 GLN 199 A THR 200 n 179 THR 200 A ASP 201 n 180 ASP 201 A LEU 202 n 181 LEU 202 A LYS 203 n 182 LYS 203 A ILE 204 n 183 ILE 204 A PHE 205 n 184 PHE 205 A VAL 206 n 185 VAL 206 A TYR 207 n 186 TYR 207 A GLN 208 n 187 GLN 208 A ASP 209 n 188 ASP 209 A ASN 210 n 189 ASN 210 A ARG 211 n 190 ARG 211 A ARG 212 n 191 ARG 212 A ASP 213 n 192 ASP 213 A ASN 214 n 193 ASN 214 A ALA 215 n 194 ALA 215 A VAL 216 n 195 VAL 216 A THR 217 n 196 THR 217 A ASP 218 n 197 ASP 218 A LEU 219 n 198 LEU 219 A GLN 220 n 199 GLN 220 A PRO 221 n 200 PRO 221 A MSE 222 n 201 MSE 222 A SER 223 n 202 SER 223 A ILE 224 n 203 ILE 224 A LEU 225 n 204 LEU 225 A GLU 226 n 205 GLU 226 A ASN 227 n 206 ASN 227 A GLN 228 n 207 GLN 228 A ILE 229 n 208 ILE 229 A SER 230 n 209 SER 230 A TYR 231 n 210 TYR 231 A THR 232 n 211 THR 232 A TYR 233 n 212 TYR 233 A ASN 234 n 213 ASN 234 A ARG 235 n 214 ARG 235 A ASN 236 n 215 ASN 236 A LEU 237 n 216 LEU 237 A ILE 238 n 217 ILE 238 A PHE 239 n 218 PHE 239 A PRO 240 n 219 PRO 240 A ALA 241 n 220 ALA 241 A GLY 242 n 221 GLY 242 A ASN 243 n 222 ASN 243 A GLU 244 n 223 GLU 244 A TYR 245 n 224 TYR 245 A ARG 246 n 225 ARG 246 A ARG 247 n 226 ARG 247 A MSE 248 n 227 MSE 248 A GLU 249 n 228 GLU 249 A PHE 250 n 229 PHE 250 A LEU 251 n 230 LEU 251 A SER 252 n 231 SER 252 A ASN 253 n 232 ASN 253 A LYS 254 n 233 LYS 254 A TYR 255 n 234 TYR 255 A ASN 256 n 235 ASN 256 A GLY 257 n 236 GLY 257 A MSE 258 n 237 MSE 258 A HIS 259 n 238 HIS 259 A VAL 260 n 239 VAL 260 A GLU 261 n 240 GLU 261 A ASN 262 n 241 ASN 262 A ILE 263 n 242 ILE 263 A SER 264 n 243 SER 264 A PHE 265 n 244 PHE 265 A HIS 266 n 245 HIS 266 A ASN 267 n 246 ASN 267 A PRO 268 n 247 PRO 268 A TYR 269 n 248 TYR 269 A TYR 270 n 249 TYR 270 A ASN 271 n 250 ASN 271 A VAL 272 n 251 VAL 272 A GLU 273 n 252 GLU 273 A LEU 274 n 253 LEU 274 A MSE 275 n 254 MSE 275 A THR 276 n 255 THR 276 A ASP 277 n 256 ASP 277 A TYR 278 n 257 TYR 278 A ARG 279 n 258 ARG 279 A ARG 280 n 259 ARG 280 A ASP 281 n 260 ASP 281 A LYS 282 n 261 LYS 282 A GLY 283 n 262 GLY 283 A THR 284 n 263 THR 284 A TYR 285 n 264 TYR 285 A GLN 286 n 265 GLN 286 A TYR 287 n 266 TYR 287 A ASP 288 n 267 ASP 288 A GLN 289 n 268 GLN 289 A ASP 290 n 269 ASP 290 A GLN 291 n 270 GLN 291 A ASP 292 n 271 ASP 292 A GLY 293 n 272 GLY 293 A ARG 294 n 273 ARG 294 A PHE 295 n 274 PHE 295 A PHE 296 n 275 PHE 296 A ILE 297 n 276 ILE 297 A ARG 298 n 277 ARG 298 A CYS 299 n 278 CYS 299 A SER 300 n 279 SER 300 A ASP 301 n 280 ASP 301 A CYS 302 n 281 CYS 302 A ASN 303 n 282 ASN 303 A ASP 304 n 283 ASP 304 A PRO 305 n 284 PRO 305 A ASP 306 n 285 ASP 306 A THR 307 n 286 THR 307 A GLU 308 n 287 GLU 308 A ALA 309 n 288 ALA 309 A ASP 310 n 289 ASP 310 A TYR 311 n 290 TYR 311 A TYR 312 n 291 TYR 312 A ILE 313 n 292 ILE 313 A VAL 314 n 293 VAL 314 A HIS 315 n 294 HIS 315 A PHE 316 n 295 PHE 316 A THR 317 n 296 THR 317 A LEU 318 n 297 LEU 318 A ALA 319 n 298 ALA 319 A CYS 320 n 299 CYS 320 A ASP 321 n 300 ASP 321 A PRO 322 n 301 PRO 322 A LEU 323 n 302 LEU 323 A PRO 324 n 303 PRO 324 A ASP 325 n 304 ASP 325 A GLY 326 n 305 GLY 326 A SER 327 n 306 SER 327 A VAL 328 n 307 VAL 328 A TYR 329 n 308 TYR 329 A LEU 330 n 309 LEU 330 A ASN 331 n 310 ASN 331 A GLY 332 n 311 GLY 332 A GLU 333 n 312 GLU 333 A LEU 334 n 313 LEU 334 A PHE 335 n 314 PHE 335 A ASN 336 n 315 ASN 336 A ASN 337 n 316 ASN 337 A VAL 338 n 317 VAL 338 A LEU 339 n 318 LEU 339 A ASP 340 n 319 ASP 340 A GLU 341 n 320 GLU 341 A LYS 342 n 321 LYS 342 A SER 343 n 322 SER 343 A LYS 344 n 323 LYS 344 A MSE 345 n 324 MSE 345 A GLY 346 n 325 GLY 346 A TYR 347 n 326 TYR 347 A ASN 348 n 327 ASN 348 A PHE 349 n 328 PHE 349 A GLU 350 n 329 GLU 350 A THR 351 n 330 THR 351 A LYS 352 n 331 LYS 352 A GLN 353 n 332 GLN 353 A TYR 354 n 333 TYR 354 A GLU 355 n 334 GLU 355 A LYS 356 n 335 LYS 356 A ALA 357 n 336 ALA 357 A VAL 358 n 337 VAL 358 A LEU 359 n 338 LEU 359 A LEU 360 n 339 LEU 360 A LYS 361 n 340 LYS 361 A GLN 362 n 341 GLN 362 A GLY 363 n 342 GLY 363 A SER 364 n 343 SER 364 A TYR 365 n 344 TYR 365 A ASN 366 n 345 ASN 366 A TYR 367 n 346 TYR 367 A GLN 368 n 347 GLN 368 A TYR 369 n 348 TYR 369 A LEU 370 n 349 LEU 370 A PHE 371 n 350 PHE 371 A VAL 372 n 351 VAL 372 A PRO 373 n 352 PRO 373 A THR 374 n 353 THR 374 A GLY 375 n 354 GLY 375 A SER 376 n 355 SER 376 A SER 377 n 356 SER 377 A VAL 378 n 357 VAL 378 A GLY 379 n 358 GLY 379 A GLN 380 n 359 GLN 380 A THR 381 n 360 THR 381 A GLY 382 n 361 GLY 382 A PRO 383 n 362 PRO 383 A ILE 384 n 363 ILE 384 A GLU 385 n 364 GLU 385 A GLY 386 n 365 GLY 386 A ASN 387 n 366 ASN 387 A TYR 388 n 367 TYR 388 A TYR 389 n 368 TYR 389 A GLN 390 n 369 GLN 390 A THR 391 n 370 THR 391 A GLN 392 n 371 GLN 392 A ASN 393 n 372 ASN 393 A GLU 394 n 373 GLU 394 A TYR 395 n 374 TYR 395 A SER 396 n 375 SER 396 A ILE 397 n 376 ILE 397 A TYR 398 n 377 TYR 398 A VAL 399 n 378 VAL 399 A TYR 400 n 379 TYR 400 A TYR 401 n 380 TYR 401 A ARG 402 n 381 ARG 402 A PRO 403 n 382 PRO 403 A MSE 404 n 383 MSE 404 A GLY 405 n 384 GLY 405 A ALA 406 n 385 ALA 406 A ARG 407 n 386 ARG 407 A TYR 408 n 387 TYR 408 A ASP 409 n 388 ASP 409 A ARG 410 n 389 ARG 410 A LEU 411 n 390 LEU 411 A ILE 412 n 391 ILE 412 A GLY 413 n 392 GLY 413 A VAL 414 n 393 VAL 414 A THR 415 n 394 THR 415 A THR 416 n 395 THR 416 A VAL 417 n 396 VAL 417 A ARG 418 n 397 ARG 418 A ASN 419 n 398 ASN 419 A n 399 420 A n 400 421 A n 401 422 A n 402 423 A n 403 424 A 0.6944 0.1740 -0.5056 0.1464 -0.1843 0.4016 -0.0129 0.1136 -0.0159 0.0212 0.0023 -0.0101 -0.0061 -0.0696 0.0106 0.0089 -0.0051 0.0030 0.0269 0.0023 0.0103 refined 0.9494 24.4776 8.7129 X-RAY DIFFRACTION A 23 A 419 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 2 dimeric 4450 -50 33380 A GLU 226 A OE2 GLU 205 1_555 A MG 507 H MG MG 1_555 A HOH 832 I O HOH 1_555 78.5 A GLU 226 A OE2 GLU 205 1_555 A MG 507 H MG MG 1_555 A HOH 854 I O HOH 1_555 159.7 A HOH 832 I O HOH 1_555 A MG 507 H MG MG 1_555 A HOH 854 I O HOH 1_555 83.6 A GLU 226 A OE2 GLU 205 1_555 A MG 507 H MG MG 1_555 A HOH 855 I O HOH 1_555 86.7 A HOH 832 I O HOH 1_555 A MG 507 H MG MG 1_555 A HOH 855 I O HOH 1_555 79.2 A HOH 854 I O HOH 1_555 A MG 507 H MG MG 1_555 A HOH 855 I O HOH 1_555 99.1 A GLU 226 A OE2 GLU 205 1_555 A MG 507 H MG MG 1_555 A HOH 857 I O HOH 1_555 92.7 A HOH 832 I O HOH 1_555 A MG 507 H MG MG 1_555 A HOH 857 I O HOH 1_555 91.7 A HOH 854 I O HOH 1_555 A MG 507 H MG MG 1_555 A HOH 857 I O HOH 1_555 78.5 A HOH 855 I O HOH 1_555 A MG 507 H MG MG 1_555 A HOH 857 I O HOH 1_555 170.8 A GLU 244 A OE1 GLU 223 1_555 A MG 506 G MG MG 1_555 A ASP 290 A OD2 ASP 269 1_555 81.0 A GLU 244 A OE1 GLU 223 1_555 A MG 506 G MG MG 1_555 A ASP 290 A OD1 ASP 269 1_555 80.8 A ASP 290 A OD2 ASP 269 1_555 A MG 506 G MG MG 1_555 A ASP 290 A OD1 ASP 269 1_555 53.1 A GLU 244 A OE1 GLU 223 1_555 A MG 506 G MG MG 1_555 A ASP 292 A OD1 ASP 271 1_555 165.6 A ASP 290 A OD2 ASP 269 1_555 A MG 506 G MG MG 1_555 A ASP 292 A OD1 ASP 271 1_555 99.3 A ASP 290 A OD1 ASP 269 1_555 A MG 506 G MG MG 1_555 A ASP 292 A OD1 ASP 271 1_555 87.9 A GLU 244 A OE1 GLU 223 1_555 A MG 506 G MG MG 1_555 A GLN 392 A O GLN 371 1_555 92.2 A ASP 290 A OD2 ASP 269 1_555 A MG 506 G MG MG 1_555 A GLN 392 A O GLN 371 1_555 166.3 A ASP 290 A OD1 ASP 269 1_555 A MG 506 G MG MG 1_555 A GLN 392 A O GLN 371 1_555 137.8 A ASP 292 A OD1 ASP 271 1_555 A MG 506 G MG MG 1_555 A GLN 392 A O GLN 371 1_555 90.2 A GLU 244 A OE1 GLU 223 1_555 A MG 506 G MG MG 1_555 A GLN 392 A OE1 GLN 371 1_555 98.0 A ASP 290 A OD2 ASP 269 1_555 A MG 506 G MG MG 1_555 A GLN 392 A OE1 GLN 371 1_555 117.6 A ASP 290 A OD1 ASP 269 1_555 A MG 506 G MG MG 1_555 A GLN 392 A OE1 GLN 371 1_555 65.1 A ASP 292 A OD1 ASP 271 1_555 A MG 506 G MG MG 1_555 A GLN 392 A OE1 GLN 371 1_555 68.9 A GLN 392 A O GLN 371 1_555 A MG 506 G MG MG 1_555 A GLN 392 A OE1 GLN 371 1_555 75.0 A GLU 244 A OE1 GLU 223 1_555 A MG 506 G MG MG 1_555 A HOH 759 I O HOH 1_555 93.2 A ASP 290 A OD2 ASP 269 1_555 A MG 506 G MG MG 1_555 A HOH 759 I O HOH 1_555 85.3 A ASP 290 A OD1 ASP 269 1_555 A MG 506 G MG MG 1_555 A HOH 759 I O HOH 1_555 138.4 A ASP 292 A OD1 ASP 271 1_555 A MG 506 G MG MG 1_555 A HOH 759 I O HOH 1_555 101.2 A GLN 392 A O GLN 371 1_555 A MG 506 G MG MG 1_555 A HOH 759 I O HOH 1_555 83.2 A GLN 392 A OE1 GLN 371 1_555 A MG 506 G MG MG 1_555 A HOH 759 I O HOH 1_555 155.7 A MSE 96 SELENOMETHIONINE A MSE 75 MET A MSE 222 SELENOMETHIONINE A MSE 201 MET A MSE 248 SELENOMETHIONINE A MSE 227 MET A MSE 258 SELENOMETHIONINE A MSE 237 MET A MSE 275 SELENOMETHIONINE A MSE 254 MET A MSE 345 SELENOMETHIONINE A MSE 324 MET A MSE 404 SELENOMETHIONINE A MSE 383 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N ASP 29 A N ASP 8 A O THR 153 A O THR 132 A O VAL 159 A O VAL 138 A N ILE 52 A N ILE 31 A N ASP 29 A N ASP 8 A O THR 153 A O THR 132 A O ALA 154 A O ALA 133 A N ILE 139 A N ILE 118 A O ASN 136 A O ASN 115 A N CYS 81 A N CYS 60 A N TYR 76 A N TYR 55 A O THR 102 A O THR 81 A N LYS 41 A N LYS 20 A O GLU 61 A O GLU 40 A N ILE 62 A N ILE 41 A O LEU 122 A O LEU 101 A O ASN 119 A O ASN 98 A N ALA 108 A N ALA 87 A N ASN 97 A N ASN 76 A O GLN 130 A O GLN 109 A N ASN 164 A N ASN 143 A O ASN 189 A O ASN 168 A N PHE 186 A N PHE 165 A O TYR 231 A O TYR 210 A O GLN 228 A O GLN 207 A N LEU 225 A N LEU 204 A N ASN 164 A N ASN 143 A O ASN 189 A O ASN 168 A N GLN 182 A N GLN 161 A O PHE 239 A O PHE 218 A N PHE 205 A N PHE 184 A O TYR 398 A O TYR 377 A N VAL 399 A N VAL 378 A O GLY 413 A O GLY 392 A N MSE 248 A N MSE 227 A O TYR 365 A O TYR 344 A O SER 364 A O SER 343 A N PHE 296 A N PHE 275 A N MSE 248 A N MSE 227 A O TYR 365 A O TYR 344 A O GLN 368 A O GLN 347 A N ASN 331 A N ASN 310 A N SER 264 A N SER 243 A O ASN 271 A O ASN 250 A N VAL 272 A N VAL 251 A O HIS 315 A O HIS 294 A N VAL 314 A N VAL 293 A O VAL 358 A O VAL 337 A O GLN 353 A O GLN 332 A N ASN 348 A N ASN 327 1 A GLY 0 A GLY 1 1 Y 1 A GLU 420 A GLU 399 1 Y 1 A MSE 421 A MSE 400 1 Y 1 A GLN 422 A GLN 401 1 Y 1 A VAL 423 A VAL 402 1 Y 1 A PHE 424 A PHE 403 1 Y 1 -11.95 1.80 110.60 98.65 A A A N CA CB MSE MSE MSE 248 248 248 N 1 A GLN 179 -118.31 -95.05 1 A GLN 179 -117.75 -97.24 1 A TYR 231 -119.92 65.08 1 A ASN 262 -175.78 148.79 1 A LYS 282 -104.36 43.15 138.430 41.6185 18.520 0.3500 0.0000 0.0000 0.3500 -0.0000 -0.6900 0.9620 0.9330 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. GLYCEROL (GOL), TRIS-BUFFER (TRS), MG and CL IONS FROM THE CRYOPROTECTANT AND FROM THE CRYSTALLIZATION CONDITION HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. 4. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU R CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 5. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 6. SOLVENT ATOMS WERE EXCLUDED FROM TLS REFINEMENT. 0.2130 0.1589 0.1617 2.3000 25.203 1512 31457 4.8000 98.2500 1.000 0.200 9.4260 0.1200 RANDOM 1 THROUGHOUT 0.000 MAD 0.1820 0.1750 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD WITH PHASES BABINET MODEL WITH MASK 2.3000 25.203 277 3528 26 0 3225 0.013 0.020 3447 0.001 0.020 3095 1.618 1.951 4710 0.794 3.001 7126 6.645 5.000 433 37.317 25.303 198 14.128 15.000 528 18.847 15.000 16 0.094 0.200 499 0.006 0.020 4096 0.001 0.020 870 4.988 6.933 1633 4.943 6.927 1630 6.320 12.966 2048 0.2590 0.2260 2.3600 45 2250 2295 20 99.3500 2.30 25.203 4R7F 31486 31486 0.185 1 10.400 8.800 98.500 2.300 2.360 1.8 20925 2303 1.256 1 9.100 99.600 2.360 2.420 2.1 20118 2242 1.102 1 9.000 99.700 2.420 2.490 2.4 19670 2201 0.956 1 8.900 99.700 2.490 2.570 2.7 17444 2143 0.802 1 8.100 99.700 2.570 2.660 2.9 14623 1883 0.679 1 7.800 91.900 2.660 2.750 4.0 18299 2003 0.571 1 9.100 99.600 2.750 2.850 5.0 18757 1961 0.463 1 9.600 99.800 2.850 2.970 6.0 17506 1864 0.381 1 9.400 99.800 2.970 3.100 8.1 16620 1798 0.276 1 9.200 99.800 3.100 3.250 11.3 15690 1727 0.191 1 9.100 99.900 3.250 3.430 13.0 14874 1652 0.159 1 9.000 100.000 3.430 3.640 15.7 12766 1566 0.119 1 8.200 99.900 3.640 3.890 18.5 9971 1332 0.091 1 7.500 90.900 3.890 4.200 24.4 12345 1375 0.075 1 9.000 99.300 4.200 4.600 27.2 12017 1292 0.068 1 9.300 100.000 4.600 5.140 26.6 10714 1162 0.067 1 9.200 100.000 5.140 5.940 22.4 8886 1054 0.076 1 8.400 100.000 5.940 7.270 18.0 6476 855 0.091 1 7.600 96.000 7.270 10.290 27.3 5919 666 0.068 1 8.900 93.100 10.290 25.203 31.2 3543 407 0.056 1 8.700 93.300 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing Tom Terwilliger terwilliger@LANL.gov http://www.solve.lanl.gov/ SOLVE program data scaling Phil Evans pre@mrc-lmb.cam.ac.uk SCALA package 3.3.20 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.7.0032 data reduction MOSFLM Crystal structure of a hypothetical protein (PARMER_01801) from Parabacteroides merdae ATCC 43184 at 2.30 A resolution 1 N N 2 N N 3 N N 3 N N 4 N N 4 N N 5 N N 5 N N 6 N N A SER 91 A SER 70 HELX_P A TYR 95 A TYR 74 1 1 5 A TYR 197 A TYR 176 HELX_P A ASP 201 A ASP 180 1 2 5 A ASN 234 A ASN 213 HELX_P A ASN 236 A ASN 215 5 3 3 A ASP 304 A ASP 283 HELX_P A ALA 309 A ALA 288 1 4 6 A GLY 332 A GLY 311 HELX_P A ASN 336 A ASN 315 5 5 5 disulf 2.084 A CYS 299 A SG CYS 278 1_555 A CYS 302 A SG CYS 281 1_555 covale 1.333 both A TYR 95 A C TYR 74 1_555 A MSE 96 A N MSE 75 1_555 covale 1.324 both A MSE 96 A C MSE 75 1_555 A ASN 97 A N ASN 76 1_555 covale 1.322 both A A PRO 221 A C PRO 200 1_555 A MSE 222 A N MSE 201 1_555 covale 1.331 both C A PRO 221 A C PRO 200 1_555 A MSE 222 A N MSE 201 1_555 covale 1.338 both A A MSE 222 A C MSE 201 1_555 A SER 223 A N SER 202 1_555 covale 1.333 both C A MSE 222 A C MSE 201 1_555 A SER 223 A N SER 202 1_555 covale 1.328 both A ARG 247 A C ARG 226 1_555 A MSE 248 A N MSE 227 1_555 covale 1.330 both A MSE 248 A C MSE 227 1_555 A GLU 249 A N GLU 228 1_555 covale 1.326 both A GLY 257 A C GLY 236 1_555 A MSE 258 A N MSE 237 1_555 covale 1.326 both A MSE 258 A C MSE 237 1_555 A HIS 259 A N HIS 238 1_555 covale 1.324 both A LEU 274 A C LEU 253 1_555 A MSE 275 A N MSE 254 1_555 covale 1.322 both A MSE 275 A C MSE 254 1_555 A THR 276 A N THR 255 1_555 covale 1.314 both A LYS 344 A C LYS 323 1_555 A MSE 345 A N MSE 324 1_555 covale 1.320 both A MSE 345 A C MSE 324 1_555 A GLY 346 A N GLY 325 1_555 covale 1.335 both A PRO 403 A C PRO 382 1_555 A MSE 404 A N MSE 383 1_555 covale 1.326 both A MSE 404 A C MSE 383 1_555 A GLY 405 A N GLY 384 1_555 metalc 2.379 A GLU 226 A OE2 GLU 205 1_555 A MG 507 H MG MG 1_555 metalc 2.361 A GLU 244 A OE1 GLU 223 1_555 A MG 506 G MG MG 1_555 metalc 2.407 A ASP 290 A OD2 ASP 269 1_555 A MG 506 G MG MG 1_555 metalc 2.476 A ASP 290 A OD1 ASP 269 1_555 A MG 506 G MG MG 1_555 metalc 2.200 A ASP 292 A OD1 ASP 271 1_555 A MG 506 G MG MG 1_555 metalc 2.155 A GLN 392 A O GLN 371 1_555 A MG 506 G MG MG 1_555 metalc 2.984 A GLN 392 A OE1 GLN 371 1_555 A MG 506 G MG MG 1_555 metalc 2.388 A MG 506 G MG MG 1_555 A HOH 759 I O HOH 1_555 metalc 2.193 A MG 507 H MG MG 1_555 A HOH 832 I O HOH 1_555 metalc 2.228 A MG 507 H MG MG 1_555 A HOH 854 I O HOH 1_555 metalc 2.298 A MG 507 H MG MG 1_555 A HOH 855 I O HOH 1_555 metalc 2.255 A MG 507 H MG MG 1_555 A HOH 857 I O HOH 1_555 STRUCTURAL GENOMICS, UNKNOWN FUNCTION Three domains have an Immunoglobulin-like beta-sandwich fold, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION A LEU 124 A LEU 103 1 A PRO 125 A PRO 104 -6.10 A ASN 267 A ASN 246 1 A PRO 268 A PRO 247 7.84 A7AEG3_9PORP UNP 1 23 A7AEG3 QVKFFTDVNSKQIKTLQVKVAGELISEPYIALGGEEQIEINFDGLGSGYTRYAYNVVHCNADWTQSQLSPIEYMNGFQGT TIDDFANSIGTTTQYSNYRLLLPNDDVQFKVSGNYAIQVYNEDTPDQIIFTACFSVVEPVVNISASVSGNTDIDTNQSHQ QVSFNINNKNFPITYPQTDLKIFVYQDNRRDNAVTDLQPMSILENQISYTYNRNLIFPAGNEYRRMEFLSNKYNGMHVEN ISFHNPYYNVELMTDYRRDKGTYQYDQDQDGRFFIRCSDCNDPDTEADYYIVHFTLACDPLPDGSVYLNGELFNNVLDEK SKMGYNFETKQYEKAVLLKQGSYNYQYLFVPTGSSVGQTGPIEGNYYQTQNEYSIYVYYRPMGARYDRLIGVTTVRNEMQ VF 23 424 4R7F 23 424 A7AEG3 A 1 2 403 1 expression tag GLY 0 4R7F A A7AEG3 UNP 1 3 5 4 2 4 3 3 3 3 5 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A ASP 29 A ASP 8 A VAL 30 A VAL 9 A ILE 150 A ILE 129 A VAL 159 A VAL 138 A TYR 51 A TYR 30 A ALA 53 A ALA 32 A ASP 29 A ASP 8 A VAL 30 A VAL 9 A ILE 150 A ILE 129 A VAL 159 A VAL 138 A GLY 135 A GLY 114 A ASN 143 A ASN 122 A TYR 74 A TYR 53 A CYS 81 A CYS 60 A THR 102 A THR 81 A THR 103 A THR 82 A ILE 35 A ILE 14 A VAL 42 A VAL 21 A ILE 60 A ILE 39 A LEU 67 A LEU 46 A TYR 117 A TYR 96 A LEU 124 A LEU 103 A PHE 107 A PHE 86 A ASN 109 A ASN 88 A MSE 96 A MSE 75 A ASN 97 A ASN 76 A GLN 130 A GLN 109 A PHE 131 A PHE 110 A ASN 164 A ASN 143 A SER 170 A SER 149 A HIS 181 A HIS 160 A ASN 189 A ASN 168 A GLN 228 A GLN 207 A TYR 231 A TYR 210 A SER 223 A SER 202 A LEU 225 A LEU 204 A ASN 164 A ASN 143 A SER 170 A SER 149 A HIS 181 A HIS 160 A ASN 189 A ASN 168 A ILE 238 A ILE 217 A PRO 240 A PRO 219 A LEU 202 A LEU 181 A GLN 208 A GLN 187 A GLU 394 A GLU 373 A TYR 401 A TYR 380 A ARG 410 A ARG 389 A ARG 418 A ARG 397 A ARG 246 A ARG 225 A GLU 249 A GLU 228 A GLY 363 A GLY 342 A PRO 373 A PRO 352 A PHE 295 A PHE 274 A ILE 297 A ILE 276 A ARG 246 A ARG 225 A GLU 249 A GLU 228 A GLY 363 A GLY 342 A PRO 373 A PRO 352 A GLY 326 A GLY 305 A ASN 331 A ASN 310 A VAL 260 A VAL 239 A HIS 266 A HIS 245 A TYR 269 A TYR 248 A LEU 274 A LEU 253 A TYR 311 A TYR 290 A ALA 319 A ALA 298 A GLN 353 A GLN 332 A LYS 361 A LYS 340 A GLY 346 A GLY 325 A ASN 348 A ASN 327 BINDING SITE FOR RESIDUE GOL A 501 A GOL 501 Software 9 BINDING SITE FOR RESIDUE TRS A 502 A TRS 502 Software 6 BINDING SITE FOR RESIDUE TRS A 503 A TRS 503 Software 8 BINDING SITE FOR RESIDUE CL A 504 A CL 504 Software 3 BINDING SITE FOR RESIDUE CL A 505 A CL 505 Software 4 BINDING SITE FOR RESIDUE MG A 506 A MG 506 Software 5 BINDING SITE FOR RESIDUE MG A 507 A MG 507 Software 5 A VAL 162 A VAL 141 9 1_555 A ASN 164 A ASN 143 9 1_555 A ASP 174 A ASP 153 9 7_555 A ASN 189 A ASN 168 9 1_555 A ASN 190 A ASN 169 9 1_555 A LYS 191 A LYS 170 9 1_555 A ASN 192 A ASN 171 9 1_555 A PHE 193 A PHE 172 9 1_555 A TYR 233 A TYR 212 9 7_555 A ARG 212 A ARG 191 6 1_555 A ASN 337 A ASN 316 6 1_555 A VAL 338 A VAL 317 6 1_555 A LEU 339 A LEU 318 6 1_555 A HOH 612 I HOH 6 1_555 A HOH 827 I HOH 6 1_555 A TRP 85 A TRP 64 8 1_555 A TYR 207 A TYR 186 8 1_555 A ASN 210 A ASN 189 8 1_555 A ARG 212 A ARG 191 8 1_555 A TYR 398 A TYR 377 8 1_555 A HOH 688 I HOH 8 1_555 A HOH 689 I HOH 8 1_555 A HOH 805 I HOH 8 1_555 A ILE 204 A ILE 183 3 1_555 A ASP 218 A ASP 197 3 1_555 A LEU 219 A LEU 198 3 1_555 A ASN 227 A ASN 206 4 4_455 A ALA 357 A ALA 336 4 1_555 A HOH 749 I HOH 4 4_455 A HOH 859 I HOH 4 1_555 A GLU 244 A GLU 223 5 1_555 A ASP 290 A ASP 269 5 1_555 A ASP 292 A ASP 271 5 1_555 A GLN 392 A GLN 371 5 1_555 A HOH 759 I HOH 5 1_555 A GLU 226 A GLU 205 5 1_555 A HOH 832 I HOH 5 1_555 A HOH 854 I HOH 5 1_555 A HOH 855 I HOH 5 1_555 A HOH 857 I HOH 5 1_555 96 P 43 21 2