0.018933
0.000000
0.000000
-0.000000
0.018933
0.000000
0.000000
-0.000000
0.005804
0.000000
0.000000
0.000000
Osipiuk, J.
Wu, R.
Clancy, S.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
52.818
52.818
172.283
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
DeoR family transcriptional regulator from Listeria monocytogenes.
100
1
CCD
2013-08-20
ADSC QUANTUM 315r
double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
19-ID
APS
0.9792
SYNCHROTRON
APS BEAMLINE 19-ID
28608.670
Lmo0547 protein
Putative sugar-binding domain
61..311 protein fragment
1
man
polymer
18.015
water
140
nat
water
no
yes
SNATVDLEQKLEEKFGLEEAIVVATHD(MSE)SEEEALNFLAKEAAYTLSKRIAKVKTLGISWGKTIRKFANEFPFIPHK
DLTIIPLIGG(MSE)GSSDIDLHSNQICYDLKKK(MSE)KCHSKYLYAPALVEDTE(MSE)KTDLSKNKYISEVLEEGKT
VD(MSE)AIVGVSSPYNHST(MSE)EEIGYINSEDIEELRYKDVVGDINSRFFTADGKEAKTEINTHVIGLSLEELKNIP
TVVALANGLQKKEALVAALNAGLIDVIVITDR(MSE)AEYIL
SNATVDLEQKLEEKFGLEEAIVVATHDMSEEEALNFLAKEAAYTLSKRIAKVKTLGISWGKTIRKFANEFPFIPHKDLTI
IPLIGGMGSSDIDLHSNQICYDLKKKMKCHSKYLYAPALVEDTEMKTDLSKNKYISEVLEEGKTVDMAIVGVSSPYNHST
MEEIGYINSEDIEELRYKDVVGDINSRFFTADGKEAKTEINTHVIGLSLEELKNIPTVVALANGLQKKEALVAALNAGLI
DVIVITDRMAEYIL
A
MCSG-APC106822
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC BAA-679 / EGD-e
sample
lmo0547
169963
Listeria monocytogenes
562
Escherichia coli
BL21(DE3)
plasmid
pMCSG68
1
2.10
41.43
VAPOR DIFFUSION, SITTING DROP
4.5
0.2 M sodium chloride, 0.1 M sodium acetate buffer, 20% PEG-8000, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
Midwest Center for Structural Genomics
MCSG
PSI:Biology
software
repository
Initial release
Refinement description
1
0
2014-09-17
1
1
2017-11-22
Y
RCSB
Y
RCSB
2014-09-05
REL
REL
HOH
water
HOH
1
2
HOH
HOH
401
A
HOH
2
2
HOH
HOH
402
A
HOH
3
2
HOH
HOH
403
A
HOH
4
2
HOH
HOH
404
A
HOH
5
2
HOH
HOH
405
A
HOH
6
2
HOH
HOH
406
A
HOH
7
2
HOH
HOH
407
A
HOH
8
2
HOH
HOH
408
A
HOH
9
2
HOH
HOH
409
A
HOH
10
2
HOH
HOH
410
A
HOH
11
2
HOH
HOH
411
A
HOH
12
2
HOH
HOH
412
A
HOH
13
2
HOH
HOH
413
A
HOH
14
2
HOH
HOH
414
A
HOH
15
2
HOH
HOH
415
A
HOH
16
2
HOH
HOH
416
A
HOH
17
2
HOH
HOH
417
A
HOH
18
2
HOH
HOH
418
A
HOH
19
2
HOH
HOH
419
A
HOH
20
2
HOH
HOH
420
A
HOH
21
2
HOH
HOH
421
A
HOH
22
2
HOH
HOH
422
A
HOH
23
2
HOH
HOH
423
A
HOH
24
2
HOH
HOH
424
A
HOH
25
2
HOH
HOH
425
A
HOH
26
2
HOH
HOH
426
A
HOH
27
2
HOH
HOH
427
A
HOH
28
2
HOH
HOH
428
A
HOH
29
2
HOH
HOH
429
A
HOH
30
2
HOH
HOH
430
A
HOH
31
2
HOH
HOH
431
A
HOH
32
2
HOH
HOH
432
A
HOH
33
2
HOH
HOH
433
A
HOH
34
2
HOH
HOH
434
A
HOH
35
2
HOH
HOH
435
A
HOH
36
2
HOH
HOH
436
A
HOH
37
2
HOH
HOH
437
A
HOH
38
2
HOH
HOH
438
A
HOH
39
2
HOH
HOH
439
A
HOH
40
2
HOH
HOH
440
A
HOH
41
2
HOH
HOH
441
A
HOH
42
2
HOH
HOH
442
A
HOH
43
2
HOH
HOH
443
A
HOH
44
2
HOH
HOH
444
A
HOH
45
2
HOH
HOH
445
A
HOH
46
2
HOH
HOH
446
A
HOH
47
2
HOH
HOH
447
A
HOH
48
2
HOH
HOH
448
A
HOH
49
2
HOH
HOH
449
A
HOH
50
2
HOH
HOH
450
A
HOH
51
2
HOH
HOH
451
A
HOH
52
2
HOH
HOH
452
A
HOH
53
2
HOH
HOH
453
A
HOH
54
2
HOH
HOH
454
A
HOH
55
2
HOH
HOH
455
A
HOH
56
2
HOH
HOH
456
A
HOH
57
2
HOH
HOH
457
A
HOH
58
2
HOH
HOH
458
A
HOH
59
2
HOH
HOH
459
A
HOH
60
2
HOH
HOH
460
A
HOH
61
2
HOH
HOH
461
A
HOH
62
2
HOH
HOH
462
A
HOH
63
2
HOH
HOH
463
A
HOH
64
2
HOH
HOH
464
A
HOH
65
2
HOH
HOH
465
A
HOH
66
2
HOH
HOH
466
A
HOH
67
2
HOH
HOH
467
A
HOH
68
2
HOH
HOH
468
A
HOH
69
2
HOH
HOH
469
A
HOH
70
2
HOH
HOH
470
A
HOH
71
2
HOH
HOH
471
A
HOH
72
2
HOH
HOH
472
A
HOH
73
2
HOH
HOH
473
A
HOH
74
2
HOH
HOH
474
A
HOH
75
2
HOH
HOH
475
A
HOH
76
2
HOH
HOH
476
A
HOH
77
2
HOH
HOH
477
A
HOH
78
2
HOH
HOH
478
A
HOH
79
2
HOH
HOH
479
A
HOH
80
2
HOH
HOH
480
A
HOH
81
2
HOH
HOH
481
A
HOH
82
2
HOH
HOH
482
A
HOH
83
2
HOH
HOH
483
A
HOH
84
2
HOH
HOH
484
A
HOH
85
2
HOH
HOH
485
A
HOH
86
2
HOH
HOH
486
A
HOH
87
2
HOH
HOH
487
A
HOH
88
2
HOH
HOH
488
A
HOH
89
2
HOH
HOH
489
A
HOH
90
2
HOH
HOH
490
A
HOH
91
2
HOH
HOH
491
A
HOH
92
2
HOH
HOH
492
A
HOH
93
2
HOH
HOH
493
A
HOH
94
2
HOH
HOH
494
A
HOH
95
2
HOH
HOH
495
A
HOH
96
2
HOH
HOH
496
A
HOH
97
2
HOH
HOH
497
A
HOH
98
2
HOH
HOH
498
A
HOH
99
2
HOH
HOH
499
A
HOH
100
2
HOH
HOH
500
A
HOH
101
2
HOH
HOH
501
A
HOH
102
2
HOH
HOH
502
A
HOH
103
2
HOH
HOH
503
A
HOH
104
2
HOH
HOH
504
A
HOH
105
2
HOH
HOH
505
A
HOH
106
2
HOH
HOH
506
A
HOH
107
2
HOH
HOH
507
A
HOH
108
2
HOH
HOH
508
A
HOH
109
2
HOH
HOH
509
A
HOH
110
2
HOH
HOH
510
A
HOH
111
2
HOH
HOH
511
A
HOH
112
2
HOH
HOH
512
A
HOH
113
2
HOH
HOH
513
A
HOH
114
2
HOH
HOH
514
A
HOH
115
2
HOH
HOH
515
A
HOH
116
2
HOH
HOH
516
A
HOH
117
2
HOH
HOH
517
A
HOH
118
2
HOH
HOH
518
A
HOH
119
2
HOH
HOH
519
A
HOH
120
2
HOH
HOH
520
A
HOH
121
2
HOH
HOH
521
A
HOH
122
2
HOH
HOH
522
A
HOH
123
2
HOH
HOH
523
A
HOH
124
2
HOH
HOH
524
A
HOH
125
2
HOH
HOH
525
A
HOH
126
2
HOH
HOH
526
A
HOH
127
2
HOH
HOH
527
A
HOH
128
2
HOH
HOH
528
A
HOH
129
2
HOH
HOH
529
A
HOH
130
2
HOH
HOH
530
A
HOH
131
2
HOH
HOH
531
A
HOH
132
2
HOH
HOH
532
A
HOH
133
2
HOH
HOH
533
A
HOH
134
2
HOH
HOH
534
A
HOH
135
2
HOH
HOH
535
A
HOH
136
2
HOH
HOH
536
A
HOH
137
2
HOH
HOH
537
A
HOH
138
2
HOH
HOH
538
A
HOH
139
2
HOH
HOH
539
A
HOH
140
2
HOH
HOH
540
A
n
1
58
A
ASN
59
n
2
ASN
59
A
ALA
60
n
3
ALA
60
A
THR
61
n
4
THR
61
A
VAL
62
n
5
VAL
62
A
ASP
63
n
6
ASP
63
A
LEU
64
n
7
LEU
64
A
GLU
65
n
8
GLU
65
A
GLN
66
n
9
GLN
66
A
LYS
67
n
10
LYS
67
A
LEU
68
n
11
LEU
68
A
GLU
69
n
12
GLU
69
A
GLU
70
n
13
GLU
70
A
LYS
71
n
14
LYS
71
A
PHE
72
n
15
PHE
72
A
GLY
73
n
16
GLY
73
A
LEU
74
n
17
LEU
74
A
GLU
75
n
18
GLU
75
A
GLU
76
n
19
GLU
76
A
ALA
77
n
20
ALA
77
A
ILE
78
n
21
ILE
78
A
VAL
79
n
22
VAL
79
A
VAL
80
n
23
VAL
80
A
ALA
81
n
24
ALA
81
A
THR
82
n
25
THR
82
A
HIS
83
n
26
HIS
83
A
ASP
84
n
27
ASP
84
A
MSE
85
n
28
MSE
85
A
SER
86
n
29
SER
86
A
GLU
87
n
30
GLU
87
A
GLU
88
n
31
GLU
88
A
GLU
89
n
32
GLU
89
A
ALA
90
n
33
ALA
90
A
LEU
91
n
34
LEU
91
A
ASN
92
n
35
ASN
92
A
PHE
93
n
36
PHE
93
A
LEU
94
n
37
LEU
94
A
ALA
95
n
38
ALA
95
A
LYS
96
n
39
LYS
96
A
GLU
97
n
40
GLU
97
A
ALA
98
n
41
ALA
98
A
ALA
99
n
42
ALA
99
A
TYR
100
n
43
TYR
100
A
THR
101
n
44
THR
101
A
LEU
102
n
45
LEU
102
A
SER
103
n
46
SER
103
A
LYS
104
n
47
LYS
104
A
ARG
105
n
48
ARG
105
A
ILE
106
n
49
ILE
106
A
ALA
107
n
50
ALA
107
A
LYS
108
n
51
LYS
108
A
VAL
109
n
52
VAL
109
A
LYS
110
n
53
LYS
110
A
THR
111
n
54
THR
111
A
LEU
112
n
55
LEU
112
A
GLY
113
n
56
GLY
113
A
ILE
114
n
57
ILE
114
A
SER
115
n
58
SER
115
A
TRP
116
n
59
TRP
116
A
GLY
117
n
60
GLY
117
A
LYS
118
n
61
LYS
118
A
THR
119
n
62
THR
119
A
ILE
120
n
63
ILE
120
A
ARG
121
n
64
ARG
121
A
LYS
122
n
65
LYS
122
A
PHE
123
n
66
PHE
123
A
ALA
124
n
67
ALA
124
A
ASN
125
n
68
ASN
125
A
GLU
126
n
69
GLU
126
A
PHE
127
n
70
PHE
127
A
PRO
128
n
71
PRO
128
A
PHE
129
n
72
PHE
129
A
ILE
130
n
73
ILE
130
A
PRO
131
n
74
PRO
131
A
HIS
132
n
75
HIS
132
A
LYS
133
n
76
LYS
133
A
ASP
134
n
77
ASP
134
A
LEU
135
n
78
LEU
135
A
THR
136
n
79
THR
136
A
ILE
137
n
80
ILE
137
A
ILE
138
n
81
ILE
138
A
PRO
139
n
82
PRO
139
A
LEU
140
n
83
LEU
140
A
ILE
141
n
84
ILE
141
A
GLY
142
n
85
GLY
142
A
GLY
143
n
86
GLY
143
A
n
87
144
A
n
88
145
A
n
89
146
A
n
90
147
A
n
91
148
A
n
92
149
A
ASP
150
n
93
ASP
150
A
LEU
151
n
94
LEU
151
A
HIS
152
n
95
HIS
152
A
SER
153
n
96
SER
153
A
ASN
154
n
97
ASN
154
A
GLN
155
n
98
GLN
155
A
ILE
156
n
99
ILE
156
A
CYS
157
n
100
CYS
157
A
TYR
158
n
101
TYR
158
A
ASP
159
n
102
ASP
159
A
LEU
160
n
103
LEU
160
A
LYS
161
n
104
LYS
161
A
LYS
162
n
105
LYS
162
A
LYS
163
n
106
LYS
163
A
MSE
164
n
107
MSE
164
A
LYS
165
n
108
LYS
165
A
CYS
166
n
109
CYS
166
A
HIS
167
n
110
HIS
167
A
SER
168
n
111
SER
168
A
LYS
169
n
112
LYS
169
A
TYR
170
n
113
TYR
170
A
LEU
171
n
114
LEU
171
A
TYR
172
n
115
TYR
172
A
ALA
173
n
116
ALA
173
A
PRO
174
n
117
PRO
174
A
ALA
175
n
118
ALA
175
A
LEU
176
n
119
LEU
176
A
VAL
177
n
120
VAL
177
A
GLU
178
n
121
GLU
178
A
ASP
179
n
122
ASP
179
A
THR
180
n
123
THR
180
A
GLU
181
n
124
GLU
181
A
MSE
182
n
125
MSE
182
A
LYS
183
n
126
LYS
183
A
THR
184
n
127
THR
184
A
ASP
185
n
128
ASP
185
A
LEU
186
n
129
LEU
186
A
SER
187
n
130
SER
187
A
LYS
188
n
131
LYS
188
A
ASN
189
n
132
ASN
189
A
LYS
190
n
133
LYS
190
A
TYR
191
n
134
TYR
191
A
ILE
192
n
135
ILE
192
A
SER
193
n
136
SER
193
A
GLU
194
n
137
GLU
194
A
VAL
195
n
138
VAL
195
A
LEU
196
n
139
LEU
196
A
GLU
197
n
140
GLU
197
A
GLU
198
n
141
GLU
198
A
GLY
199
n
142
GLY
199
A
LYS
200
n
143
LYS
200
A
THR
201
n
144
THR
201
A
VAL
202
n
145
VAL
202
A
ASP
203
n
146
ASP
203
A
MSE
204
n
147
MSE
204
A
ALA
205
n
148
ALA
205
A
ILE
206
n
149
ILE
206
A
VAL
207
n
150
VAL
207
A
GLY
208
n
151
GLY
208
A
VAL
209
n
152
VAL
209
A
SER
210
n
153
SER
210
A
SER
211
n
154
SER
211
A
PRO
212
n
155
PRO
212
A
TYR
213
n
156
TYR
213
A
ASN
214
n
157
ASN
214
A
HIS
215
n
158
HIS
215
A
SER
216
n
159
SER
216
A
THR
217
n
160
THR
217
A
MSE
218
n
161
MSE
218
A
GLU
219
n
162
GLU
219
A
GLU
220
n
163
GLU
220
A
ILE
221
n
164
ILE
221
A
GLY
222
n
165
GLY
222
A
TYR
223
n
166
TYR
223
A
ILE
224
n
167
ILE
224
A
ASN
225
n
168
ASN
225
A
SER
226
n
169
SER
226
A
GLU
227
n
170
GLU
227
A
ASP
228
n
171
ASP
228
A
ILE
229
n
172
ILE
229
A
GLU
230
n
173
GLU
230
A
GLU
231
n
174
GLU
231
A
LEU
232
n
175
LEU
232
A
ARG
233
n
176
ARG
233
A
TYR
234
n
177
TYR
234
A
LYS
235
n
178
LYS
235
A
ASP
236
n
179
ASP
236
A
VAL
237
n
180
VAL
237
A
VAL
238
n
181
VAL
238
A
GLY
239
n
182
GLY
239
A
ASP
240
n
183
ASP
240
A
ILE
241
n
184
ILE
241
A
ASN
242
n
185
ASN
242
A
SER
243
n
186
SER
243
A
ARG
244
n
187
ARG
244
A
PHE
245
n
188
PHE
245
A
PHE
246
n
189
PHE
246
A
THR
247
n
190
THR
247
A
ALA
248
n
191
ALA
248
A
ASP
249
n
192
ASP
249
A
GLY
250
n
193
GLY
250
A
LYS
251
n
194
LYS
251
A
GLU
252
n
195
GLU
252
A
ALA
253
n
196
ALA
253
A
LYS
254
n
197
LYS
254
A
THR
255
n
198
THR
255
A
GLU
256
n
199
GLU
256
A
ILE
257
n
200
ILE
257
A
ASN
258
n
201
ASN
258
A
THR
259
n
202
THR
259
A
HIS
260
n
203
HIS
260
A
VAL
261
n
204
VAL
261
A
ILE
262
n
205
ILE
262
A
GLY
263
n
206
GLY
263
A
LEU
264
n
207
LEU
264
A
SER
265
n
208
SER
265
A
LEU
266
n
209
LEU
266
A
GLU
267
n
210
GLU
267
A
GLU
268
n
211
GLU
268
A
LEU
269
n
212
LEU
269
A
LYS
270
n
213
LYS
270
A
ASN
271
n
214
ASN
271
A
ILE
272
n
215
ILE
272
A
PRO
273
n
216
PRO
273
A
THR
274
n
217
THR
274
A
VAL
275
n
218
VAL
275
A
VAL
276
n
219
VAL
276
A
ALA
277
n
220
ALA
277
A
LEU
278
n
221
LEU
278
A
ALA
279
n
222
ALA
279
A
ASN
280
n
223
ASN
280
A
GLY
281
n
224
GLY
281
A
LEU
282
n
225
LEU
282
A
GLN
283
n
226
GLN
283
A
LYS
284
n
227
LYS
284
A
LYS
285
n
228
LYS
285
A
GLU
286
n
229
GLU
286
A
ALA
287
n
230
ALA
287
A
LEU
288
n
231
LEU
288
A
VAL
289
n
232
VAL
289
A
ALA
290
n
233
ALA
290
A
ALA
291
n
234
ALA
291
A
LEU
292
n
235
LEU
292
A
ASN
293
n
236
ASN
293
A
ALA
294
n
237
ALA
294
A
GLY
295
n
238
GLY
295
A
LEU
296
n
239
LEU
296
A
ILE
297
n
240
ILE
297
A
ASP
298
n
241
ASP
298
A
VAL
299
n
242
VAL
299
A
ILE
300
n
243
ILE
300
A
VAL
301
n
244
VAL
301
A
ILE
302
n
245
ILE
302
A
THR
303
n
246
THR
303
A
ASP
304
n
247
ASP
304
A
ARG
305
n
248
ARG
305
A
MSE
306
n
249
MSE
306
A
ALA
307
n
250
ALA
307
A
GLU
308
n
251
GLU
308
A
TYR
309
n
252
TYR
309
A
ILE
310
n
253
ILE
310
A
LEU
311
n
254
LEU
311
A
0.5899
-0.3977
0.2326
0.5438
-0.1129
2.1447
-0.0032
0.0483
0.0361
-0.0140
0.0296
-0.0728
-0.1626
0.1109
-0.0264
0.0306
-0.0106
0.0151
0.0224
-0.0096
0.0169
refined
1.2996
23.3118
11.2123
X-RAY DIFFRACTION
A
59
A
311
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
85
SELENOMETHIONINE
A
MSE
28
MET
A
MSE
164
SELENOMETHIONINE
A
MSE
107
MET
A
MSE
182
SELENOMETHIONINE
A
MSE
125
MET
A
MSE
204
SELENOMETHIONINE
A
MSE
147
MET
A
MSE
218
SELENOMETHIONINE
A
MSE
161
MET
A
MSE
306
SELENOMETHIONINE
A
MSE
249
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
78
A
N
ILE
21
A
O
ILE
300
A
O
ILE
243
A
O
VAL
299
A
O
VAL
242
A
N
ALA
277
A
N
ALA
220
A
O
VAL
276
A
O
VAL
219
A
N
ALA
205
A
N
ALA
148
A
O
MSE
204
A
O
MSE
147
A
N
GLY
113
A
N
GLY
56
A
N
LEU
112
A
N
LEU
55
A
O
ILE
138
A
O
ILE
81
A
N
ILE
137
A
N
ILE
80
A
O
HIS
167
A
O
HIS
110
A
N
VAL
238
A
N
VAL
181
A
O
PHE
246
A
O
PHE
189
1
A
SER
58
A
SER
1
1
Y
1
A
MSE
144
A
MSE
87
1
Y
1
A
GLY
145
A
GLY
88
1
Y
1
A
SER
146
A
SER
89
1
Y
1
A
SER
147
A
SER
90
1
Y
1
A
ASP
148
A
ASP
91
1
Y
1
A
ILE
149
A
ILE
92
1
Y
1
-3.86
0.50
120.30
116.44
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
121
121
121
N
1
-18.15
2.20
98.90
80.75
A
A
A
CG
SE
CE
MSE
MSE
MSE
204
204
204
N
1
-3.09
0.50
120.30
117.21
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
244
244
244
N
1
A
HIS
83
-86.53
-87.91
1
A
SER
115
-87.77
-141.31
1
A
PHE
129
-97.96
59.38
1
A
CYS
166
-116.01
-164.31
84.770
31.0160
13.400
0.6100
-0.0000
-0.0000
0.6100
0.0000
-1.2300
0.9590
0.9360
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED
0.2312
0.1815
0.1839
0.1839
1.869
39.0000
1061
20024
20024
5.0000
99.7800
6.7140
0.0990
RANDOM
1
THROUGHOUT
0.000
0
SAD
0.1530
0.1460
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
1.869
39.0000
140
2077
0
0
1937
0.017
0.019
2105
0.001
0.020
2073
1.831
1.988
2871
0.902
3.000
4824
5.101
5.000
283
38.449
25.938
96
15.578
15.000
395
21.987
15.000
7
0.112
0.200
334
0.008
0.020
2377
0.001
0.020
434
2.044
2.091
1028
2.041
2.089
1027
3.034
3.115
1291
0.2700
0.2290
1.9170
79
1423
1502
1502
20
99.4700
33.1
1.8690
39.0
4R9N
21169
21169
0
0
0.114
1.493
1
8.200
9.000
99.800
0.886
1.869
1.900
2.33
1021
0.833
1
7.300
100.000
0.734
1.900
1.940
1028
0.858
1
8.200
100.000
0.676
1.940
1.970
1020
0.869
1
9.100
100.000
0.613
1.970
2.010
1034
0.925
1
9.600
100.000
0.481
2.010
2.060
1029
0.961
1
9.500
100.000
0.393
2.060
2.110
1060
1.024
1
9.500
100.000
0.361
2.110
2.160
1015
1.027
1
9.500
100.000
0.296
2.160
2.220
1047
1.111
1
9.500
100.000
0.251
2.220
2.280
1039
1.141
1
9.600
100.000
0.210
2.280
2.360
1047
1.226
1
9.400
100.000
0.184
2.360
2.440
1035
1.236
1
9.500
100.000
0.163
2.440
2.540
1073
1.390
1
9.500
100.000
0.138
2.540
2.650
1050
1.511
1
9.400
100.000
0.129
2.650
2.790
1057
1.658
1
9.400
100.000
0.108
2.790
2.970
1055
1.818
1
9.300
100.000
0.095
2.970
3.200
1062
1.950
1
9.200
100.000
0.081
3.200
3.520
1094
1.998
1
8.800
100.000
0.073
3.520
4.030
1081
2.285
1
8.300
99.700
0.057
4.030
5.070
1114
2.647
1
8.100
99.500
0.063
5.070
50.000
1208
3.539
1
7.500
97.700
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.8.0073
data extraction
PDB
deposit@deposit.rcsb.org
July. 29, 2014
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.15
data collection
SBC-Collect
data reduction
HKL-3000
data scaling
HKL-3000
phasing
SHELXCD
phasing
SHELXD
phasing
MLPHARE
phasing
DM
phasing
SOLVE
phasing
RESOLVE
phasing
HKL-3000
Lmo0547 protein
DeoR family transcriptional regulator from Listeria monocytogenes.
1
N
N
2
N
N
A
ASN
59
A
ASN
2
HELX_P
A
GLY
73
A
GLY
16
1
1
15
A
SER
86
A
SER
29
HELX_P
A
ALA
107
A
ALA
50
1
2
22
A
GLY
117
A
GLY
60
HELX_P
A
PHE
127
A
PHE
70
1
3
11
A
HIS
152
A
HIS
95
HELX_P
A
LYS
165
A
LYS
108
1
4
14
A
ASP
179
A
ASP
122
HELX_P
A
ASN
189
A
ASN
132
1
5
11
A
ASN
189
A
ASN
132
HELX_P
A
THR
201
A
THR
144
1
6
13
A
SER
216
A
SER
159
HELX_P
A
ILE
221
A
ILE
164
1
7
6
A
ASN
225
A
ASN
168
HELX_P
A
LYS
235
A
LYS
178
1
8
11
A
THR
255
A
THR
198
HELX_P
A
HIS
260
A
HIS
203
1
9
6
A
SER
265
A
SER
208
HELX_P
A
ASN
271
A
ASN
214
1
10
7
A
GLY
281
A
GLY
224
HELX_P
A
GLN
283
A
GLN
226
5
11
3
A
LYS
284
A
LYS
227
HELX_P
A
ALA
294
A
ALA
237
1
12
11
A
ASP
304
A
ASP
247
HELX_P
A
LEU
311
A
LEU
254
1
13
8
covale
1.326
A
ASP
84
A
C
ASP
27
1_555
A
MSE
85
A
N
MSE
28
1_555
covale
1.336
A
MSE
85
A
C
MSE
28
1_555
A
SER
86
A
N
SER
29
1_555
covale
1.329
A
LYS
163
A
C
LYS
106
1_555
A
MSE
164
A
N
MSE
107
1_555
covale
1.328
A
MSE
164
A
C
MSE
107
1_555
A
LYS
165
A
N
LYS
108
1_555
covale
1.325
A
GLU
181
A
C
GLU
124
1_555
A
MSE
182
A
N
MSE
125
1_555
covale
1.329
A
MSE
182
A
C
MSE
125
1_555
A
LYS
183
A
N
LYS
126
1_555
covale
1.340
A
ASP
203
A
C
ASP
146
1_555
A
MSE
204
A
N
MSE
147
1_555
covale
1.343
A
MSE
204
A
C
MSE
147
1_555
A
ALA
205
A
N
ALA
148
1_555
covale
1.334
A
THR
217
A
C
THR
160
1_555
A
MSE
218
A
N
MSE
161
1_555
covale
1.324
A
MSE
218
A
C
MSE
161
1_555
A
GLU
219
A
N
GLU
162
1_555
covale
1.341
A
ARG
305
A
C
ARG
248
1_555
A
MSE
306
A
N
MSE
249
1_555
covale
1.329
A
MSE
306
A
C
MSE
249
1_555
A
ALA
307
A
N
ALA
250
1_555
TRANSCRIPTION
structural genomics, APC106822, DeoR family, transcriptional regulator, sugar-binding, PSI-Biology, Midwest Center for Structural Genomics, MCSG, Transcription
Q8Y9I1_LISMO
UNP
1
61
Q8Y9I1
TVDLEQKLEEKFGLEEAIVVATHDMSEEEALNFLAKEAAYTLSKRIAKVKTLGISWGKTIRKFANEFPFIPHKDLTIIPL
IGGMGSSDIDLHSNQICYDLKKKMKCHSKYLYAPALVEDTEMKTDLSKNKYISEVLEEGKTVDMAIVGVSSPYNHSTMEE
IGYINSEDIEELRYKDVVGDINSRFFTADGKEAKTEINTHVIGLSLEELKNIPTVVALANGLQKKEALVAALNAGLIDVI
VITDRMAEYIL
61
311
4R9N
61
311
Q8Y9I1
A
1
4
254
1
EXPRESSION TAG
SER
58
4R9N
A
Q8Y9I1
UNP
1
1
EXPRESSION TAG
ASN
59
4R9N
A
Q8Y9I1
UNP
2
1
EXPRESSION TAG
ALA
60
4R9N
A
Q8Y9I1
UNP
3
7
2
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
GLU
76
A
GLU
19
A
VAL
80
A
VAL
23
A
VAL
299
A
VAL
242
A
THR
303
A
THR
246
A
THR
274
A
THR
217
A
LEU
278
A
LEU
221
A
MSE
204
A
MSE
147
A
GLY
208
A
GLY
151
A
THR
111
A
THR
54
A
ILE
114
A
ILE
57
A
THR
136
A
THR
79
A
PRO
139
A
PRO
82
A
HIS
167
A
HIS
110
A
SER
168
A
SER
111
A
VAL
237
A
VAL
180
A
ILE
241
A
ILE
184
A
ARG
244
A
ARG
187
A
THR
247
A
THR
190
96
P 43 21 2