0.007825 0.000000 0.004941 -0.000000 0.018113 0.000000 0.000000 -0.000000 0.014542 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 122.270 90.000 127.800 55.210 81.330 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a Putative exported protein (BF0058) from Bacteroides fragilis NCTC 9343 at 2.60 A resolution 10.2210/pdb4raa/pdb pdb_00004raa 100 1 Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing) PIXEL 2014-07-30 DECTRIS PILATUS 6M single crystal Si(111) bent MAD M x-ray 1 0.91837 1.0 0.97947 1.0 0.97908 1.0 BL11-1 SSRL 0.91837,0.97947,0.97908 SYNCHROTRON SSRL BEAMLINE BL11-1 41647.984 Putative exported protein 1 man polymer 94.971 PHOSPHATE ION 1 syn non-polymer 18.015 water 14 nat water no yes GKELHESSTIISFKEHTDVNADSILELSFLKLQTKDSCLVKNVGLIRELNNCLLILDSANSNLYVFNKSGAFVNQIGQKG SGPGEYILLSSFFVDNNKNYIAAIDIAQDKVLYYNATDFSFLYERRLPFSTSCCLQLEDGNLLWNSREYTDSKLSDFYFV VTDSLFDIIDYK(MSE)NKEFKSGYTTGPSQ(MSE)IYKVGTNVFAYTPFDLTIYRVGTSEIVPAHSFSFEGTDIPSLDF LNKTSNQGNSNYLYDLIQSDYISYYCVEETERDLFVCY(MSE)KNKEKYIGLYDKNTDRTYNYPIKIFQDQLKVGELNYF SIGSVDDYHVAPLDVLSLKD(MSE)AGNGYVFDDKLSELLTISNEEDNSILLFVRIKK GKELHESSTIISFKEHTDVNADSILELSFLKLQTKDSCLVKNVGLIRELNNCLLILDSANSNLYVFNKSGAFVNQIGQKG SGPGEYILLSSFFVDNNKNYIAAIDIAQDKVLYYNATDFSFLYERRLPFSTSCCLQLEDGNLLWNSREYTDSKLSDFYFV VTDSLFDIIDYKMNKEFKSGYTTGPSQMIYKVGTNVFAYTPFDLTIYRVGTSEIVPAHSFSFEGTDIPSLDFLNKTSNQG NSNYLYDLIQSDYISYYCVEETERDLFVCYMKNKEKYIGLYDKNTDRTYNYPIKIFQDQLKVGELNYFSIGSVDDYHVAP LDVLSLKDMAGNGYVFDDKLSELLTISNEEDNSILLFVRIKK A JCSG-386541 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n NCTC 9343 sample BF9343_0057 272559 Bacteroides fragilis 562 Escherichia Coli HK100 Plasmid SpeedET 1 2.91 57.77 VAPOR DIFFUSION, SITTING DROP 0.250M di-ammonium hydrogen phosphate, 22.1% polyethylene glycol 3350, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI:Biology software citation_author database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Refinement description Database references Database references Derived calculations 1 0 2014-10-15 1 1 2017-11-22 1 2 2018-01-24 1 3 2023-02-01 _software.classification _software.name _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2014-09-09 REL REL PO4 PHOSPHATE ION HOH water THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 23-383 OF THE TARGET SEQUENCE. PO4 400 2 PO4 PO4 400 A HOH 401 3 HOH HOH 501 A HOH 402 3 HOH HOH 502 A HOH 403 3 HOH HOH 503 A HOH 404 3 HOH HOH 504 A HOH 405 3 HOH HOH 505 A HOH 406 3 HOH HOH 506 A HOH 407 3 HOH HOH 507 A HOH 408 3 HOH HOH 508 A HOH 409 3 HOH HOH 509 A HOH 410 3 HOH HOH 510 A HOH 411 3 HOH HOH 511 A HOH 412 3 HOH HOH 512 A HOH 413 3 HOH HOH 513 A HOH 414 3 HOH HOH 514 A n 1 0 A n 2 23 A n 3 24 A n 4 25 A n 5 26 A n 6 27 A n 7 28 A n 8 29 A THR 30 n 9 THR 30 A ILE 31 n 10 ILE 31 A ILE 32 n 11 ILE 32 A SER 33 n 12 SER 33 A PHE 34 n 13 PHE 34 A LYS 35 n 14 LYS 35 A GLU 36 n 15 GLU 36 A HIS 37 n 16 HIS 37 A THR 38 n 17 THR 38 A ASP 39 n 18 ASP 39 A VAL 40 n 19 VAL 40 A ASN 41 n 20 ASN 41 A ALA 42 n 21 ALA 42 A ASP 43 n 22 ASP 43 A SER 44 n 23 SER 44 A ILE 45 n 24 ILE 45 A LEU 46 n 25 LEU 46 A GLU 47 n 26 GLU 47 A LEU 48 n 27 LEU 48 A SER 49 n 28 SER 49 A PHE 50 n 29 PHE 50 A LEU 51 n 30 LEU 51 A LYS 52 n 31 LYS 52 A LEU 53 n 32 LEU 53 A GLN 54 n 33 GLN 54 A THR 55 n 34 THR 55 A LYS 56 n 35 LYS 56 A ASP 57 n 36 ASP 57 A SER 58 n 37 SER 58 A CYS 59 n 38 CYS 59 A LEU 60 n 39 LEU 60 A VAL 61 n 40 VAL 61 A LYS 62 n 41 LYS 62 A ASN 63 n 42 ASN 63 A VAL 64 n 43 VAL 64 A GLY 65 n 44 GLY 65 A LEU 66 n 45 LEU 66 A ILE 67 n 46 ILE 67 A ARG 68 n 47 ARG 68 A GLU 69 n 48 GLU 69 A LEU 70 n 49 LEU 70 A ASN 71 n 50 ASN 71 A ASN 72 n 51 ASN 72 A CYS 73 n 52 CYS 73 A LEU 74 n 53 LEU 74 A LEU 75 n 54 LEU 75 A ILE 76 n 55 ILE 76 A LEU 77 n 56 LEU 77 A ASP 78 n 57 ASP 78 A SER 79 n 58 SER 79 A ALA 80 n 59 ALA 80 A ASN 81 n 60 ASN 81 A SER 82 n 61 SER 82 A ASN 83 n 62 ASN 83 A LEU 84 n 63 LEU 84 A TYR 85 n 64 TYR 85 A VAL 86 n 65 VAL 86 A PHE 87 n 66 PHE 87 A ASN 88 n 67 ASN 88 A LYS 89 n 68 LYS 89 A SER 90 n 69 SER 90 A GLY 91 n 70 GLY 91 A ALA 92 n 71 ALA 92 A PHE 93 n 72 PHE 93 A VAL 94 n 73 VAL 94 A ASN 95 n 74 ASN 95 A GLN 96 n 75 GLN 96 A ILE 97 n 76 ILE 97 A GLY 98 n 77 GLY 98 A GLN 99 n 78 GLN 99 A LYS 100 n 79 LYS 100 A GLY 101 n 80 GLY 101 A SER 102 n 81 SER 102 A GLY 103 n 82 GLY 103 A PRO 104 n 83 PRO 104 A GLY 105 n 84 GLY 105 A GLU 106 n 85 GLU 106 A TYR 107 n 86 TYR 107 A ILE 108 n 87 ILE 108 A LEU 109 n 88 LEU 109 A LEU 110 n 89 LEU 110 A SER 111 n 90 SER 111 A SER 112 n 91 SER 112 A PHE 113 n 92 PHE 113 A PHE 114 n 93 PHE 114 A VAL 115 n 94 VAL 115 A ASP 116 n 95 ASP 116 A ASN 117 n 96 ASN 117 A ASN 118 n 97 ASN 118 A LYS 119 n 98 LYS 119 A ASN 120 n 99 ASN 120 A TYR 121 n 100 TYR 121 A ILE 122 n 101 ILE 122 A ALA 123 n 102 ALA 123 A ALA 124 n 103 ALA 124 A ILE 125 n 104 ILE 125 A ASP 126 n 105 ASP 126 A ILE 127 n 106 ILE 127 A ALA 128 n 107 ALA 128 A GLN 129 n 108 GLN 129 A ASP 130 n 109 ASP 130 A LYS 131 n 110 LYS 131 A VAL 132 n 111 VAL 132 A LEU 133 n 112 LEU 133 A TYR 134 n 113 TYR 134 A TYR 135 n 114 TYR 135 A ASN 136 n 115 ASN 136 A ALA 137 n 116 ALA 137 A THR 138 n 117 THR 138 A ASP 139 n 118 ASP 139 A PHE 140 n 119 PHE 140 A SER 141 n 120 SER 141 A PHE 142 n 121 PHE 142 A LEU 143 n 122 LEU 143 A TYR 144 n 123 TYR 144 A GLU 145 n 124 GLU 145 A ARG 146 n 125 ARG 146 A ARG 147 n 126 ARG 147 A LEU 148 n 127 LEU 148 A PRO 149 n 128 PRO 149 A PHE 150 n 129 PHE 150 A SER 151 n 130 SER 151 A THR 152 n 131 THR 152 A SER 153 n 132 SER 153 A CYS 154 n 133 CYS 154 A CYS 155 n 134 CYS 155 A LEU 156 n 135 LEU 156 A GLN 157 n 136 GLN 157 A LEU 158 n 137 LEU 158 A GLU 159 n 138 GLU 159 A ASP 160 n 139 ASP 160 A GLY 161 n 140 GLY 161 A ASN 162 n 141 ASN 162 A LEU 163 n 142 LEU 163 A LEU 164 n 143 LEU 164 A TRP 165 n 144 TRP 165 A ASN 166 n 145 ASN 166 A SER 167 n 146 SER 167 A ARG 168 n 147 ARG 168 A GLU 169 n 148 GLU 169 A TYR 170 n 149 TYR 170 A THR 171 n 150 THR 171 A ASP 172 n 151 ASP 172 A SER 173 n 152 SER 173 A LYS 174 n 153 LYS 174 A LEU 175 n 154 LEU 175 A SER 176 n 155 SER 176 A ASP 177 n 156 ASP 177 A PHE 178 n 157 PHE 178 A TYR 179 n 158 TYR 179 A PHE 180 n 159 PHE 180 A VAL 181 n 160 VAL 181 A VAL 182 n 161 VAL 182 A THR 183 n 162 THR 183 A ASP 184 n 163 ASP 184 A SER 185 n 164 SER 185 A LEU 186 n 165 LEU 186 A PHE 187 n 166 PHE 187 A ASP 188 n 167 ASP 188 A ILE 189 n 168 ILE 189 A ILE 190 n 169 ILE 190 A ASP 191 n 170 ASP 191 A TYR 192 n 171 TYR 192 A LYS 193 n 172 LYS 193 A MSE 194 n 173 MSE 194 A ASN 195 n 174 ASN 195 A LYS 196 n 175 LYS 196 A GLU 197 n 176 GLU 197 A PHE 198 n 177 PHE 198 A LYS 199 n 178 LYS 199 A SER 200 n 179 SER 200 A GLY 201 n 180 GLY 201 A TYR 202 n 181 TYR 202 A THR 203 n 182 THR 203 A THR 204 n 183 THR 204 A GLY 205 n 184 GLY 205 A PRO 206 n 185 PRO 206 A SER 207 n 186 SER 207 A GLN 208 n 187 GLN 208 A MSE 209 n 188 MSE 209 A ILE 210 n 189 ILE 210 A TYR 211 n 190 TYR 211 A LYS 212 n 191 LYS 212 A VAL 213 n 192 VAL 213 A GLY 214 n 193 GLY 214 A THR 215 n 194 THR 215 A ASN 216 n 195 ASN 216 A VAL 217 n 196 VAL 217 A PHE 218 n 197 PHE 218 A ALA 219 n 198 ALA 219 A TYR 220 n 199 TYR 220 A THR 221 n 200 THR 221 A PRO 222 n 201 PRO 222 A PHE 223 n 202 PHE 223 A ASP 224 n 203 ASP 224 A LEU 225 n 204 LEU 225 A THR 226 n 205 THR 226 A ILE 227 n 206 ILE 227 A TYR 228 n 207 TYR 228 A ARG 229 n 208 ARG 229 A VAL 230 n 209 VAL 230 A GLY 231 n 210 GLY 231 A THR 232 n 211 THR 232 A SER 233 n 212 SER 233 A GLU 234 n 213 GLU 234 A ILE 235 n 214 ILE 235 A VAL 236 n 215 VAL 236 A PRO 237 n 216 PRO 237 A ALA 238 n 217 ALA 238 A HIS 239 n 218 HIS 239 A SER 240 n 219 SER 240 A PHE 241 n 220 PHE 241 A SER 242 n 221 SER 242 A PHE 243 n 222 PHE 243 A GLU 244 n 223 GLU 244 A GLY 245 n 224 GLY 245 A THR 246 n 225 THR 246 A ASP 247 n 226 ASP 247 A ILE 248 n 227 ILE 248 A PRO 249 n 228 PRO 249 A SER 250 n 229 SER 250 A LEU 251 n 230 LEU 251 A ASP 252 n 231 ASP 252 A PHE 253 n 232 PHE 253 A LEU 254 n 233 LEU 254 A ASN 255 n 234 ASN 255 A LYS 256 n 235 LYS 256 A THR 257 n 236 THR 257 A SER 258 n 237 SER 258 A ASN 259 n 238 ASN 259 A GLN 260 n 239 GLN 260 A GLY 261 n 240 GLY 261 A ASN 262 n 241 ASN 262 A SER 263 n 242 SER 263 A ASN 264 n 243 ASN 264 A TYR 265 n 244 TYR 265 A LEU 266 n 245 LEU 266 A TYR 267 n 246 TYR 267 A ASP 268 n 247 ASP 268 A LEU 269 n 248 LEU 269 A ILE 270 n 249 ILE 270 A GLN 271 n 250 GLN 271 A SER 272 n 251 SER 272 A ASP 273 n 252 ASP 273 A TYR 274 n 253 TYR 274 A ILE 275 n 254 ILE 275 A SER 276 n 255 SER 276 A TYR 277 n 256 TYR 277 A TYR 278 n 257 TYR 278 A CYS 279 n 258 CYS 279 A VAL 280 n 259 VAL 280 A GLU 281 n 260 GLU 281 A GLU 282 n 261 GLU 282 A THR 283 n 262 THR 283 A GLU 284 n 263 GLU 284 A ARG 285 n 264 ARG 285 A ASP 286 n 265 ASP 286 A LEU 287 n 266 LEU 287 A PHE 288 n 267 PHE 288 A VAL 289 n 268 VAL 289 A CYS 290 n 269 CYS 290 A TYR 291 n 270 TYR 291 A MSE 292 n 271 MSE 292 A LYS 293 n 272 LYS 293 A ASN 294 n 273 ASN 294 A LYS 295 n 274 LYS 295 A GLU 296 n 275 GLU 296 A LYS 297 n 276 LYS 297 A TYR 298 n 277 TYR 298 A ILE 299 n 278 ILE 299 A GLY 300 n 279 GLY 300 A LEU 301 n 280 LEU 301 A TYR 302 n 281 TYR 302 A ASP 303 n 282 ASP 303 A LYS 304 n 283 LYS 304 A ASN 305 n 284 ASN 305 A THR 306 n 285 THR 306 A ASP 307 n 286 ASP 307 A ARG 308 n 287 ARG 308 A THR 309 n 288 THR 309 A TYR 310 n 289 TYR 310 A ASN 311 n 290 ASN 311 A TYR 312 n 291 TYR 312 A PRO 313 n 292 PRO 313 A ILE 314 n 293 ILE 314 A LYS 315 n 294 LYS 315 A ILE 316 n 295 ILE 316 A PHE 317 n 296 PHE 317 A GLN 318 n 297 GLN 318 A ASP 319 n 298 ASP 319 A GLN 320 n 299 GLN 320 A LEU 321 n 300 LEU 321 A LYS 322 n 301 LYS 322 A VAL 323 n 302 VAL 323 A GLY 324 n 303 GLY 324 A GLU 325 n 304 GLU 325 A LEU 326 n 305 LEU 326 A ASN 327 n 306 ASN 327 A TYR 328 n 307 TYR 328 A PHE 329 n 308 PHE 329 A SER 330 n 309 SER 330 A ILE 331 n 310 ILE 331 A GLY 332 n 311 GLY 332 A SER 333 n 312 SER 333 A VAL 334 n 313 VAL 334 A ASP 335 n 314 ASP 335 A ASP 336 n 315 ASP 336 A TYR 337 n 316 TYR 337 A HIS 338 n 317 HIS 338 A VAL 339 n 318 VAL 339 A ALA 340 n 319 ALA 340 A PRO 341 n 320 PRO 341 A LEU 342 n 321 LEU 342 A ASP 343 n 322 ASP 343 A VAL 344 n 323 VAL 344 A LEU 345 n 324 LEU 345 A SER 346 n 325 SER 346 A LEU 347 n 326 LEU 347 A LYS 348 n 327 LYS 348 A ASP 349 n 328 ASP 349 A MSE 350 n 329 MSE 350 A ALA 351 n 330 ALA 351 A GLY 352 n 331 GLY 352 A ASN 353 n 332 ASN 353 A GLY 354 n 333 GLY 354 A TYR 355 n 334 TYR 355 A VAL 356 n 335 VAL 356 A PHE 357 n 336 PHE 357 A ASP 358 n 337 ASP 358 A ASP 359 n 338 ASP 359 A LYS 360 n 339 LYS 360 A LEU 361 n 340 LEU 361 A SER 362 n 341 SER 362 A GLU 363 n 342 GLU 363 A LEU 364 n 343 LEU 364 A LEU 365 n 344 LEU 365 A THR 366 n 345 THR 366 A ILE 367 n 346 ILE 367 A SER 368 n 347 SER 368 A ASN 369 n 348 ASN 369 A GLU 370 n 349 GLU 370 A GLU 371 n 350 GLU 371 A ASP 372 n 351 ASP 372 A ASN 373 n 352 ASN 373 A SER 374 n 353 SER 374 A ILE 375 n 354 ILE 375 A LEU 376 n 355 LEU 376 A LEU 377 n 356 LEU 377 A PHE 378 n 357 PHE 378 A VAL 379 n 358 VAL 379 A ARG 380 n 359 ARG 380 A ILE 381 n 360 ILE 381 A LYS 382 n 361 LYS 382 A LYS 383 n 362 LYS 383 A 1.7799 -0.2310 0.3602 0.4570 0.2821 2.2504 -0.0244 -0.0409 0.0157 0.0876 -0.0056 0.0448 0.0854 0.1868 0.0300 0.1122 0.0026 0.1312 0.4029 0.0289 0.2219 refined 23.2860 31.9320 13.3510 X-RAY DIFFRACTION A 30 A 383 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 2 dimeric 1590 -19 30350 A MSE 194 SELENOMETHIONINE A MSE 173 MET A MSE 209 SELENOMETHIONINE A MSE 188 MET A MSE 292 SELENOMETHIONINE A MSE 271 MET A MSE 350 SELENOMETHIONINE A MSE 329 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_555 -x,y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N PHE 34 A N PHE 13 A O SER 242 A O SER 221 A O ALA 238 A O ALA 217 A N ILE 227 A N ILE 206 A O VAL 230 A O VAL 209 A N VAL 217 A N VAL 196 A O PHE 218 A O PHE 197 A N TYR 211 A N TYR 190 A N SER 49 A N SER 28 A O PHE 378 A O PHE 357 A O VAL 379 A O VAL 358 A N HIS 338 A N HIS 317 A O TYR 337 A O TYR 316 A N VAL 334 A N VAL 313 A N ARG 68 A N ARG 47 A O LEU 75 A O LEU 54 A N LEU 74 A N LEU 53 A O PHE 87 A O PHE 66 A N VAL 86 A N VAL 65 A O VAL 94 A O VAL 73 A N GLN 99 A N GLN 78 A O TYR 107 A O TYR 86 A N PHE 114 A N PHE 93 A O ALA 123 A O ALA 102 A N ALA 124 A N ALA 103 A O LEU 133 A O LEU 112 A N VAL 132 A N VAL 111 A O ARG 146 A O ARG 125 A N LEU 156 A N LEU 135 A O LEU 164 A O LEU 143 A N LEU 163 A N LEU 142 A O THR 183 A O THR 162 A N VAL 182 A N VAL 161 A O ASP 191 A O ASP 170 A N CYS 279 A N CYS 258 A O CYS 290 A O CYS 269 A N TYR 291 A N TYR 270 A O TYR 298 A O TYR 277 A N LEU 301 A N LEU 280 A O TYR 310 A O TYR 289 1 A PO4 400 B PO4 1 A GLY 0 A GLY 1 1 Y 1 A LYS 23 A LYS 2 1 Y 1 A GLU 24 A GLU 3 1 Y 1 A LEU 25 A LEU 4 1 Y 1 A HIS 26 A HIS 5 1 Y 1 A GLU 27 A GLU 6 1 Y 1 A SER 28 A SER 7 1 Y 1 A SER 29 A SER 8 1 Y 1 A LEU 70 -162.89 104.61 1 A ASN 71 64.28 -130.29 1 A ASN 72 -108.37 51.63 1 A LEU 143 -101.98 -61.96 1 A ARG 168 -97.86 45.82 1 A TYR 170 -140.34 12.38 1 A THR 171 -93.48 -154.86 1 A SER 173 -31.21 139.35 1 A PHE 187 86.57 5.53 1 A MSE 194 62.50 110.31 82.830 43.0202 15.660 2.6000 -0.0000 -3.0200 -1.2700 0.0000 0.3200 0.9370 0.9120 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U FACTORS. 3. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 4. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 5. PHOSPHATE ION (PO4) CRYSTALLIZATION SOLUTION IS MODELED. 0.2571 0.2140 0.2162 2.6000 61.243 728 14460 5.0000 96.8800 1.000 0.500 28.5010 0.2610 RANDOM 1 THROUGHOUT 0.000 MAD 0.6610 0.3160 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD WITH PHASES BABINET MODEL WITH MASK 2.6000 61.243 14 2882 5 0 2863 0.011 0.020 2939 0.002 0.020 2709 1.713 1.969 3985 1.140 3.000 6251 3.538 5.000 357 30.313 25.306 147 10.605 15.000 496 12.833 15.000 8 0.098 0.200 442 0.005 0.020 3352 0.002 0.020 690 1.162 2.658 1419 1.161 2.656 1418 1.951 4.979 1773 0.4330 0.3840 2.6710 55 1011 1066 20 96.7300 64.928 2.60 61.243 4RAA 14464 -3.000 0.073 1 8.590 92.800 0.649 2.600 2.670 1.0 3110 1992 1 92.300 0.480 2.670 2.740 1.2 3052 1971 1 94.700 0.452 2.740 2.820 1.5 2885 1863 1 92.400 0.323 2.820 2.910 2.0 2853 1868 1 92.300 0.281 2.910 3.010 2.4 2449 1660 1 90.300 0.187 3.010 3.110 3.3 2751 1756 1 94.200 0.139 3.110 3.230 4.4 2658 1694 1 94.900 0.119 3.230 3.360 5.5 2469 1594 1 93.000 0.086 3.360 3.510 7.4 2371 1549 1 92.500 0.073 3.510 3.680 9.3 2055 1402 1 89.300 0.053 3.680 3.880 11.2 2174 1387 1 94.000 0.046 3.880 4.120 13.6 2063 1331 1 93.900 0.036 4.120 4.400 17.0 1893 1225 1 93.300 0.031 4.400 4.750 18.5 1773 1169 1 93.900 0.030 4.750 5.210 19.7 1633 1056 1 93.100 0.036 5.210 5.820 17.6 1561 997 1 94.000 0.045 5.820 6.720 15.5 1270 819 1 93.800 0.029 6.720 8.230 19.5 1059 707 1 90.200 0.020 8.230 11.640 31.0 871 556 1 91.900 0.014 11.640 39.8 445 285 1 89.300 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package phasing Eric de La Fortelle sharp-develop@globalphasing.com http://www.globalphasing.com/sharp/ SHARP package data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package January 10, 2014 BUILT=20140307 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.7.0032 data reduction XDS phasing SHELXD Crystal structure of a Putative exported protein (BF0058) from Bacteroides fragilis NCTC 9343 at 2.60 A resolution 1 N N 2 N N 3 N N CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. A ASN 41 A ASN 20 HELX_P A ILE 45 A ILE 24 1 1 5 A LYS 56 A LYS 35 HELX_P A LEU 60 A LEU 39 5 2 5 A SER 173 A SER 152 HELX_P A SER 176 A SER 155 5 3 4 A SER 250 A SER 229 HELX_P A ASN 259 A ASN 238 1 4 10 A TYR 265 A TYR 244 HELX_P A SER 272 A SER 251 1 5 8 A ILE 314 A ILE 293 HELX_P A LEU 321 A LEU 300 1 6 8 A ASP 343 A ASP 322 HELX_P A ASN 353 A ASN 332 1 7 11 A ASP 358 A ASP 337 HELX_P A ILE 367 A ILE 346 1 8 10 covale 1.333 both A LYS 193 A C LYS 172 1_555 A MSE 194 A N MSE 173 1_555 covale 1.333 both A MSE 194 A C MSE 173 1_555 A ASN 195 A N ASN 174 1_555 covale 1.332 both A GLN 208 A C GLN 187 1_555 A MSE 209 A N MSE 188 1_555 covale 1.332 both A MSE 209 A C MSE 188 1_555 A ILE 210 A N ILE 189 1_555 covale 1.333 both A TYR 291 A C TYR 270 1_555 A MSE 292 A N MSE 271 1_555 covale 1.335 both A MSE 292 A C MSE 271 1_555 A LYS 293 A N LYS 272 1_555 covale 1.341 both A ASP 349 A C ASP 328 1_555 A MSE 350 A N MSE 329 1_555 covale 1.345 both A MSE 350 A C MSE 329 1_555 A ALA 351 A N ALA 330 1_555 STRUCTURAL GENOMICS, UNKNOWN FUNCTION PF16288 family, DUF4934, 6-bladed beta-propeller of YWTD superfamily, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION Q5LJ40_BACFN UNP 1 23 Q5LJ40 KELHESSTIISFKEHTDVNADSILELSFLKLQTKDSCLVKNVGLIRELNNCLLILDSANSNLYVFNKSGAFVNQIGQKGS GPGEYILLSSFFVDNNKNYIAAIDIAQDKVLYYNATDFSFLYERRLPFSTSCCLQLEDGNLLWNSREYTDSKLSDFYFVV TDSLFDIIDYKMNKEFKSGYTTGPSQMIYKVGTNVFAYTPFDLTIYRVGTSEIVPAHSFSFEGTDIPSLDFLNKTSNQGN SNYLYDLIQSDYISYYCVEETERDLFVCYMKNKEKYIGLYDKNTDRTYNYPIKIFQDQLKVGELNYFSIGSVDDYHVAPL DVLSLKDMAGNGYVFDDKLSELLTISNEEDNSILLFVRIKK 23 383 4RAA 23 383 Q5LJ40 A 1 2 362 1 expression tag GLY 0 4RAA A Q5LJ40 UNP 1 5 4 4 2 4 4 4 parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 31 A ILE 10 A PHE 34 A PHE 13 A GLU 234 A GLU 213 A PHE 243 A PHE 222 A ASP 224 A ASP 203 A GLY 231 A GLY 210 A ASN 216 A ASN 195 A THR 221 A THR 200 A ILE 210 A ILE 189 A VAL 213 A VAL 192 A LEU 46 A LEU 25 A LYS 52 A LYS 31 A ILE 375 A ILE 354 A ILE 381 A ILE 360 A TYR 337 A TYR 316 A LEU 342 A LEU 321 A SER 333 A SER 312 A VAL 334 A VAL 313 A LEU 66 A LEU 45 A LEU 70 A LEU 49 A CYS 73 A CYS 52 A ASP 78 A ASP 57 A ASN 83 A ASN 62 A ASN 88 A ASN 67 A PHE 93 A PHE 72 A GLN 96 A GLN 75 A GLN 99 A GLN 78 A LYS 100 A LYS 79 A GLU 106 A GLU 85 A TYR 107 A TYR 86 A PHE 114 A PHE 93 A VAL 115 A VAL 94 A TYR 121 A TYR 100 A ASP 126 A ASP 105 A LYS 131 A LYS 110 A ASN 136 A ASN 115 A PHE 142 A PHE 121 A ARG 147 A ARG 126 A CYS 155 A CYS 134 A GLN 157 A GLN 136 A LEU 163 A LEU 142 A ASN 166 A ASN 145 A PHE 178 A PHE 157 A THR 183 A THR 162 A ILE 189 A ILE 168 A ASN 195 A ASN 174 A ILE 275 A ILE 254 A GLU 282 A GLU 261 A ASP 286 A ASP 265 A LYS 293 A LYS 272 A GLU 296 A GLU 275 A ASP 303 A ASP 282 A ARG 308 A ARG 287 A PRO 313 A PRO 292 BINDING SITE FOR RESIDUE PO4 A 400 A PO4 400 Software 4 A ARG 146 A ARG 125 4 2_555 A ARG 146 A ARG 125 4 1_555 A ARG 147 A ARG 126 4 2_555 A ARG 147 A ARG 126 4 1_555 5 C 1 2 1