0.007825
0.000000
0.004941
-0.000000
0.018113
0.000000
0.000000
-0.000000
0.014542
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
122.270
90.000
127.800
55.210
81.330
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a Putative exported protein (BF0058) from Bacteroides fragilis NCTC 9343 at 2.60 A resolution
10.2210/pdb4raa/pdb
pdb_00004raa
100
1
Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)
PIXEL
2014-07-30
DECTRIS PILATUS 6M
single crystal Si(111) bent
MAD
M
x-ray
1
0.91837
1.0
0.97947
1.0
0.97908
1.0
BL11-1
SSRL
0.91837,0.97947,0.97908
SYNCHROTRON
SSRL BEAMLINE BL11-1
41647.984
Putative exported protein
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
18.015
water
14
nat
water
no
yes
GKELHESSTIISFKEHTDVNADSILELSFLKLQTKDSCLVKNVGLIRELNNCLLILDSANSNLYVFNKSGAFVNQIGQKG
SGPGEYILLSSFFVDNNKNYIAAIDIAQDKVLYYNATDFSFLYERRLPFSTSCCLQLEDGNLLWNSREYTDSKLSDFYFV
VTDSLFDIIDYK(MSE)NKEFKSGYTTGPSQ(MSE)IYKVGTNVFAYTPFDLTIYRVGTSEIVPAHSFSFEGTDIPSLDF
LNKTSNQGNSNYLYDLIQSDYISYYCVEETERDLFVCY(MSE)KNKEKYIGLYDKNTDRTYNYPIKIFQDQLKVGELNYF
SIGSVDDYHVAPLDVLSLKD(MSE)AGNGYVFDDKLSELLTISNEEDNSILLFVRIKK
GKELHESSTIISFKEHTDVNADSILELSFLKLQTKDSCLVKNVGLIRELNNCLLILDSANSNLYVFNKSGAFVNQIGQKG
SGPGEYILLSSFFVDNNKNYIAAIDIAQDKVLYYNATDFSFLYERRLPFSTSCCLQLEDGNLLWNSREYTDSKLSDFYFV
VTDSLFDIIDYKMNKEFKSGYTTGPSQMIYKVGTNVFAYTPFDLTIYRVGTSEIVPAHSFSFEGTDIPSLDFLNKTSNQG
NSNYLYDLIQSDYISYYCVEETERDLFVCYMKNKEKYIGLYDKNTDRTYNYPIKIFQDQLKVGELNYFSIGSVDDYHVAP
LDVLSLKDMAGNGYVFDDKLSELLTISNEEDNSILLFVRIKK
A
JCSG-386541
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NCTC 9343
sample
BF9343_0057
272559
Bacteroides fragilis
562
Escherichia Coli
HK100
Plasmid
SpeedET
1
2.91
57.77
VAPOR DIFFUSION, SITTING DROP
0.250M di-ammonium hydrogen phosphate, 22.1% polyethylene glycol 3350, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
software
citation_author
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Refinement description
Database references
Database references
Derived calculations
1
0
2014-10-15
1
1
2017-11-22
1
2
2018-01-24
1
3
2023-02-01
_software.classification
_software.name
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2014-09-09
REL
REL
PO4
PHOSPHATE ION
HOH
water
THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 23-383 OF THE TARGET SEQUENCE.
PO4
400
2
PO4
PO4
400
A
HOH
401
3
HOH
HOH
501
A
HOH
402
3
HOH
HOH
502
A
HOH
403
3
HOH
HOH
503
A
HOH
404
3
HOH
HOH
504
A
HOH
405
3
HOH
HOH
505
A
HOH
406
3
HOH
HOH
506
A
HOH
407
3
HOH
HOH
507
A
HOH
408
3
HOH
HOH
508
A
HOH
409
3
HOH
HOH
509
A
HOH
410
3
HOH
HOH
510
A
HOH
411
3
HOH
HOH
511
A
HOH
412
3
HOH
HOH
512
A
HOH
413
3
HOH
HOH
513
A
HOH
414
3
HOH
HOH
514
A
n
1
0
A
n
2
23
A
n
3
24
A
n
4
25
A
n
5
26
A
n
6
27
A
n
7
28
A
n
8
29
A
THR
30
n
9
THR
30
A
ILE
31
n
10
ILE
31
A
ILE
32
n
11
ILE
32
A
SER
33
n
12
SER
33
A
PHE
34
n
13
PHE
34
A
LYS
35
n
14
LYS
35
A
GLU
36
n
15
GLU
36
A
HIS
37
n
16
HIS
37
A
THR
38
n
17
THR
38
A
ASP
39
n
18
ASP
39
A
VAL
40
n
19
VAL
40
A
ASN
41
n
20
ASN
41
A
ALA
42
n
21
ALA
42
A
ASP
43
n
22
ASP
43
A
SER
44
n
23
SER
44
A
ILE
45
n
24
ILE
45
A
LEU
46
n
25
LEU
46
A
GLU
47
n
26
GLU
47
A
LEU
48
n
27
LEU
48
A
SER
49
n
28
SER
49
A
PHE
50
n
29
PHE
50
A
LEU
51
n
30
LEU
51
A
LYS
52
n
31
LYS
52
A
LEU
53
n
32
LEU
53
A
GLN
54
n
33
GLN
54
A
THR
55
n
34
THR
55
A
LYS
56
n
35
LYS
56
A
ASP
57
n
36
ASP
57
A
SER
58
n
37
SER
58
A
CYS
59
n
38
CYS
59
A
LEU
60
n
39
LEU
60
A
VAL
61
n
40
VAL
61
A
LYS
62
n
41
LYS
62
A
ASN
63
n
42
ASN
63
A
VAL
64
n
43
VAL
64
A
GLY
65
n
44
GLY
65
A
LEU
66
n
45
LEU
66
A
ILE
67
n
46
ILE
67
A
ARG
68
n
47
ARG
68
A
GLU
69
n
48
GLU
69
A
LEU
70
n
49
LEU
70
A
ASN
71
n
50
ASN
71
A
ASN
72
n
51
ASN
72
A
CYS
73
n
52
CYS
73
A
LEU
74
n
53
LEU
74
A
LEU
75
n
54
LEU
75
A
ILE
76
n
55
ILE
76
A
LEU
77
n
56
LEU
77
A
ASP
78
n
57
ASP
78
A
SER
79
n
58
SER
79
A
ALA
80
n
59
ALA
80
A
ASN
81
n
60
ASN
81
A
SER
82
n
61
SER
82
A
ASN
83
n
62
ASN
83
A
LEU
84
n
63
LEU
84
A
TYR
85
n
64
TYR
85
A
VAL
86
n
65
VAL
86
A
PHE
87
n
66
PHE
87
A
ASN
88
n
67
ASN
88
A
LYS
89
n
68
LYS
89
A
SER
90
n
69
SER
90
A
GLY
91
n
70
GLY
91
A
ALA
92
n
71
ALA
92
A
PHE
93
n
72
PHE
93
A
VAL
94
n
73
VAL
94
A
ASN
95
n
74
ASN
95
A
GLN
96
n
75
GLN
96
A
ILE
97
n
76
ILE
97
A
GLY
98
n
77
GLY
98
A
GLN
99
n
78
GLN
99
A
LYS
100
n
79
LYS
100
A
GLY
101
n
80
GLY
101
A
SER
102
n
81
SER
102
A
GLY
103
n
82
GLY
103
A
PRO
104
n
83
PRO
104
A
GLY
105
n
84
GLY
105
A
GLU
106
n
85
GLU
106
A
TYR
107
n
86
TYR
107
A
ILE
108
n
87
ILE
108
A
LEU
109
n
88
LEU
109
A
LEU
110
n
89
LEU
110
A
SER
111
n
90
SER
111
A
SER
112
n
91
SER
112
A
PHE
113
n
92
PHE
113
A
PHE
114
n
93
PHE
114
A
VAL
115
n
94
VAL
115
A
ASP
116
n
95
ASP
116
A
ASN
117
n
96
ASN
117
A
ASN
118
n
97
ASN
118
A
LYS
119
n
98
LYS
119
A
ASN
120
n
99
ASN
120
A
TYR
121
n
100
TYR
121
A
ILE
122
n
101
ILE
122
A
ALA
123
n
102
ALA
123
A
ALA
124
n
103
ALA
124
A
ILE
125
n
104
ILE
125
A
ASP
126
n
105
ASP
126
A
ILE
127
n
106
ILE
127
A
ALA
128
n
107
ALA
128
A
GLN
129
n
108
GLN
129
A
ASP
130
n
109
ASP
130
A
LYS
131
n
110
LYS
131
A
VAL
132
n
111
VAL
132
A
LEU
133
n
112
LEU
133
A
TYR
134
n
113
TYR
134
A
TYR
135
n
114
TYR
135
A
ASN
136
n
115
ASN
136
A
ALA
137
n
116
ALA
137
A
THR
138
n
117
THR
138
A
ASP
139
n
118
ASP
139
A
PHE
140
n
119
PHE
140
A
SER
141
n
120
SER
141
A
PHE
142
n
121
PHE
142
A
LEU
143
n
122
LEU
143
A
TYR
144
n
123
TYR
144
A
GLU
145
n
124
GLU
145
A
ARG
146
n
125
ARG
146
A
ARG
147
n
126
ARG
147
A
LEU
148
n
127
LEU
148
A
PRO
149
n
128
PRO
149
A
PHE
150
n
129
PHE
150
A
SER
151
n
130
SER
151
A
THR
152
n
131
THR
152
A
SER
153
n
132
SER
153
A
CYS
154
n
133
CYS
154
A
CYS
155
n
134
CYS
155
A
LEU
156
n
135
LEU
156
A
GLN
157
n
136
GLN
157
A
LEU
158
n
137
LEU
158
A
GLU
159
n
138
GLU
159
A
ASP
160
n
139
ASP
160
A
GLY
161
n
140
GLY
161
A
ASN
162
n
141
ASN
162
A
LEU
163
n
142
LEU
163
A
LEU
164
n
143
LEU
164
A
TRP
165
n
144
TRP
165
A
ASN
166
n
145
ASN
166
A
SER
167
n
146
SER
167
A
ARG
168
n
147
ARG
168
A
GLU
169
n
148
GLU
169
A
TYR
170
n
149
TYR
170
A
THR
171
n
150
THR
171
A
ASP
172
n
151
ASP
172
A
SER
173
n
152
SER
173
A
LYS
174
n
153
LYS
174
A
LEU
175
n
154
LEU
175
A
SER
176
n
155
SER
176
A
ASP
177
n
156
ASP
177
A
PHE
178
n
157
PHE
178
A
TYR
179
n
158
TYR
179
A
PHE
180
n
159
PHE
180
A
VAL
181
n
160
VAL
181
A
VAL
182
n
161
VAL
182
A
THR
183
n
162
THR
183
A
ASP
184
n
163
ASP
184
A
SER
185
n
164
SER
185
A
LEU
186
n
165
LEU
186
A
PHE
187
n
166
PHE
187
A
ASP
188
n
167
ASP
188
A
ILE
189
n
168
ILE
189
A
ILE
190
n
169
ILE
190
A
ASP
191
n
170
ASP
191
A
TYR
192
n
171
TYR
192
A
LYS
193
n
172
LYS
193
A
MSE
194
n
173
MSE
194
A
ASN
195
n
174
ASN
195
A
LYS
196
n
175
LYS
196
A
GLU
197
n
176
GLU
197
A
PHE
198
n
177
PHE
198
A
LYS
199
n
178
LYS
199
A
SER
200
n
179
SER
200
A
GLY
201
n
180
GLY
201
A
TYR
202
n
181
TYR
202
A
THR
203
n
182
THR
203
A
THR
204
n
183
THR
204
A
GLY
205
n
184
GLY
205
A
PRO
206
n
185
PRO
206
A
SER
207
n
186
SER
207
A
GLN
208
n
187
GLN
208
A
MSE
209
n
188
MSE
209
A
ILE
210
n
189
ILE
210
A
TYR
211
n
190
TYR
211
A
LYS
212
n
191
LYS
212
A
VAL
213
n
192
VAL
213
A
GLY
214
n
193
GLY
214
A
THR
215
n
194
THR
215
A
ASN
216
n
195
ASN
216
A
VAL
217
n
196
VAL
217
A
PHE
218
n
197
PHE
218
A
ALA
219
n
198
ALA
219
A
TYR
220
n
199
TYR
220
A
THR
221
n
200
THR
221
A
PRO
222
n
201
PRO
222
A
PHE
223
n
202
PHE
223
A
ASP
224
n
203
ASP
224
A
LEU
225
n
204
LEU
225
A
THR
226
n
205
THR
226
A
ILE
227
n
206
ILE
227
A
TYR
228
n
207
TYR
228
A
ARG
229
n
208
ARG
229
A
VAL
230
n
209
VAL
230
A
GLY
231
n
210
GLY
231
A
THR
232
n
211
THR
232
A
SER
233
n
212
SER
233
A
GLU
234
n
213
GLU
234
A
ILE
235
n
214
ILE
235
A
VAL
236
n
215
VAL
236
A
PRO
237
n
216
PRO
237
A
ALA
238
n
217
ALA
238
A
HIS
239
n
218
HIS
239
A
SER
240
n
219
SER
240
A
PHE
241
n
220
PHE
241
A
SER
242
n
221
SER
242
A
PHE
243
n
222
PHE
243
A
GLU
244
n
223
GLU
244
A
GLY
245
n
224
GLY
245
A
THR
246
n
225
THR
246
A
ASP
247
n
226
ASP
247
A
ILE
248
n
227
ILE
248
A
PRO
249
n
228
PRO
249
A
SER
250
n
229
SER
250
A
LEU
251
n
230
LEU
251
A
ASP
252
n
231
ASP
252
A
PHE
253
n
232
PHE
253
A
LEU
254
n
233
LEU
254
A
ASN
255
n
234
ASN
255
A
LYS
256
n
235
LYS
256
A
THR
257
n
236
THR
257
A
SER
258
n
237
SER
258
A
ASN
259
n
238
ASN
259
A
GLN
260
n
239
GLN
260
A
GLY
261
n
240
GLY
261
A
ASN
262
n
241
ASN
262
A
SER
263
n
242
SER
263
A
ASN
264
n
243
ASN
264
A
TYR
265
n
244
TYR
265
A
LEU
266
n
245
LEU
266
A
TYR
267
n
246
TYR
267
A
ASP
268
n
247
ASP
268
A
LEU
269
n
248
LEU
269
A
ILE
270
n
249
ILE
270
A
GLN
271
n
250
GLN
271
A
SER
272
n
251
SER
272
A
ASP
273
n
252
ASP
273
A
TYR
274
n
253
TYR
274
A
ILE
275
n
254
ILE
275
A
SER
276
n
255
SER
276
A
TYR
277
n
256
TYR
277
A
TYR
278
n
257
TYR
278
A
CYS
279
n
258
CYS
279
A
VAL
280
n
259
VAL
280
A
GLU
281
n
260
GLU
281
A
GLU
282
n
261
GLU
282
A
THR
283
n
262
THR
283
A
GLU
284
n
263
GLU
284
A
ARG
285
n
264
ARG
285
A
ASP
286
n
265
ASP
286
A
LEU
287
n
266
LEU
287
A
PHE
288
n
267
PHE
288
A
VAL
289
n
268
VAL
289
A
CYS
290
n
269
CYS
290
A
TYR
291
n
270
TYR
291
A
MSE
292
n
271
MSE
292
A
LYS
293
n
272
LYS
293
A
ASN
294
n
273
ASN
294
A
LYS
295
n
274
LYS
295
A
GLU
296
n
275
GLU
296
A
LYS
297
n
276
LYS
297
A
TYR
298
n
277
TYR
298
A
ILE
299
n
278
ILE
299
A
GLY
300
n
279
GLY
300
A
LEU
301
n
280
LEU
301
A
TYR
302
n
281
TYR
302
A
ASP
303
n
282
ASP
303
A
LYS
304
n
283
LYS
304
A
ASN
305
n
284
ASN
305
A
THR
306
n
285
THR
306
A
ASP
307
n
286
ASP
307
A
ARG
308
n
287
ARG
308
A
THR
309
n
288
THR
309
A
TYR
310
n
289
TYR
310
A
ASN
311
n
290
ASN
311
A
TYR
312
n
291
TYR
312
A
PRO
313
n
292
PRO
313
A
ILE
314
n
293
ILE
314
A
LYS
315
n
294
LYS
315
A
ILE
316
n
295
ILE
316
A
PHE
317
n
296
PHE
317
A
GLN
318
n
297
GLN
318
A
ASP
319
n
298
ASP
319
A
GLN
320
n
299
GLN
320
A
LEU
321
n
300
LEU
321
A
LYS
322
n
301
LYS
322
A
VAL
323
n
302
VAL
323
A
GLY
324
n
303
GLY
324
A
GLU
325
n
304
GLU
325
A
LEU
326
n
305
LEU
326
A
ASN
327
n
306
ASN
327
A
TYR
328
n
307
TYR
328
A
PHE
329
n
308
PHE
329
A
SER
330
n
309
SER
330
A
ILE
331
n
310
ILE
331
A
GLY
332
n
311
GLY
332
A
SER
333
n
312
SER
333
A
VAL
334
n
313
VAL
334
A
ASP
335
n
314
ASP
335
A
ASP
336
n
315
ASP
336
A
TYR
337
n
316
TYR
337
A
HIS
338
n
317
HIS
338
A
VAL
339
n
318
VAL
339
A
ALA
340
n
319
ALA
340
A
PRO
341
n
320
PRO
341
A
LEU
342
n
321
LEU
342
A
ASP
343
n
322
ASP
343
A
VAL
344
n
323
VAL
344
A
LEU
345
n
324
LEU
345
A
SER
346
n
325
SER
346
A
LEU
347
n
326
LEU
347
A
LYS
348
n
327
LYS
348
A
ASP
349
n
328
ASP
349
A
MSE
350
n
329
MSE
350
A
ALA
351
n
330
ALA
351
A
GLY
352
n
331
GLY
352
A
ASN
353
n
332
ASN
353
A
GLY
354
n
333
GLY
354
A
TYR
355
n
334
TYR
355
A
VAL
356
n
335
VAL
356
A
PHE
357
n
336
PHE
357
A
ASP
358
n
337
ASP
358
A
ASP
359
n
338
ASP
359
A
LYS
360
n
339
LYS
360
A
LEU
361
n
340
LEU
361
A
SER
362
n
341
SER
362
A
GLU
363
n
342
GLU
363
A
LEU
364
n
343
LEU
364
A
LEU
365
n
344
LEU
365
A
THR
366
n
345
THR
366
A
ILE
367
n
346
ILE
367
A
SER
368
n
347
SER
368
A
ASN
369
n
348
ASN
369
A
GLU
370
n
349
GLU
370
A
GLU
371
n
350
GLU
371
A
ASP
372
n
351
ASP
372
A
ASN
373
n
352
ASN
373
A
SER
374
n
353
SER
374
A
ILE
375
n
354
ILE
375
A
LEU
376
n
355
LEU
376
A
LEU
377
n
356
LEU
377
A
PHE
378
n
357
PHE
378
A
VAL
379
n
358
VAL
379
A
ARG
380
n
359
ARG
380
A
ILE
381
n
360
ILE
381
A
LYS
382
n
361
LYS
382
A
LYS
383
n
362
LYS
383
A
1.7799
-0.2310
0.3602
0.4570
0.2821
2.2504
-0.0244
-0.0409
0.0157
0.0876
-0.0056
0.0448
0.0854
0.1868
0.0300
0.1122
0.0026
0.1312
0.4029
0.0289
0.2219
refined
23.2860
31.9320
13.3510
X-RAY DIFFRACTION
A
30
A
383
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
2
dimeric
1590
-19
30350
A
MSE
194
SELENOMETHIONINE
A
MSE
173
MET
A
MSE
209
SELENOMETHIONINE
A
MSE
188
MET
A
MSE
292
SELENOMETHIONINE
A
MSE
271
MET
A
MSE
350
SELENOMETHIONINE
A
MSE
329
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
34
A
N
PHE
13
A
O
SER
242
A
O
SER
221
A
O
ALA
238
A
O
ALA
217
A
N
ILE
227
A
N
ILE
206
A
O
VAL
230
A
O
VAL
209
A
N
VAL
217
A
N
VAL
196
A
O
PHE
218
A
O
PHE
197
A
N
TYR
211
A
N
TYR
190
A
N
SER
49
A
N
SER
28
A
O
PHE
378
A
O
PHE
357
A
O
VAL
379
A
O
VAL
358
A
N
HIS
338
A
N
HIS
317
A
O
TYR
337
A
O
TYR
316
A
N
VAL
334
A
N
VAL
313
A
N
ARG
68
A
N
ARG
47
A
O
LEU
75
A
O
LEU
54
A
N
LEU
74
A
N
LEU
53
A
O
PHE
87
A
O
PHE
66
A
N
VAL
86
A
N
VAL
65
A
O
VAL
94
A
O
VAL
73
A
N
GLN
99
A
N
GLN
78
A
O
TYR
107
A
O
TYR
86
A
N
PHE
114
A
N
PHE
93
A
O
ALA
123
A
O
ALA
102
A
N
ALA
124
A
N
ALA
103
A
O
LEU
133
A
O
LEU
112
A
N
VAL
132
A
N
VAL
111
A
O
ARG
146
A
O
ARG
125
A
N
LEU
156
A
N
LEU
135
A
O
LEU
164
A
O
LEU
143
A
N
LEU
163
A
N
LEU
142
A
O
THR
183
A
O
THR
162
A
N
VAL
182
A
N
VAL
161
A
O
ASP
191
A
O
ASP
170
A
N
CYS
279
A
N
CYS
258
A
O
CYS
290
A
O
CYS
269
A
N
TYR
291
A
N
TYR
270
A
O
TYR
298
A
O
TYR
277
A
N
LEU
301
A
N
LEU
280
A
O
TYR
310
A
O
TYR
289
1
A
PO4
400
B
PO4
1
A
GLY
0
A
GLY
1
1
Y
1
A
LYS
23
A
LYS
2
1
Y
1
A
GLU
24
A
GLU
3
1
Y
1
A
LEU
25
A
LEU
4
1
Y
1
A
HIS
26
A
HIS
5
1
Y
1
A
GLU
27
A
GLU
6
1
Y
1
A
SER
28
A
SER
7
1
Y
1
A
SER
29
A
SER
8
1
Y
1
A
LEU
70
-162.89
104.61
1
A
ASN
71
64.28
-130.29
1
A
ASN
72
-108.37
51.63
1
A
LEU
143
-101.98
-61.96
1
A
ARG
168
-97.86
45.82
1
A
TYR
170
-140.34
12.38
1
A
THR
171
-93.48
-154.86
1
A
SER
173
-31.21
139.35
1
A
PHE
187
86.57
5.53
1
A
MSE
194
62.50
110.31
82.830
43.0202
15.660
2.6000
-0.0000
-3.0200
-1.2700
0.0000
0.3200
0.9370
0.9120
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U FACTORS. 3. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 4. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 5. PHOSPHATE ION (PO4) CRYSTALLIZATION SOLUTION IS MODELED.
0.2571
0.2140
0.2162
2.6000
61.243
728
14460
5.0000
96.8800
1.000
0.500
28.5010
0.2610
RANDOM
1
THROUGHOUT
0.000
MAD
0.6610
0.3160
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD WITH PHASES
BABINET MODEL WITH MASK
2.6000
61.243
14
2882
5
0
2863
0.011
0.020
2939
0.002
0.020
2709
1.713
1.969
3985
1.140
3.000
6251
3.538
5.000
357
30.313
25.306
147
10.605
15.000
496
12.833
15.000
8
0.098
0.200
442
0.005
0.020
3352
0.002
0.020
690
1.162
2.658
1419
1.161
2.656
1418
1.951
4.979
1773
0.4330
0.3840
2.6710
55
1011
1066
20
96.7300
64.928
2.60
61.243
4RAA
14464
-3.000
0.073
1
8.590
92.800
0.649
2.600
2.670
1.0
3110
1992
1
92.300
0.480
2.670
2.740
1.2
3052
1971
1
94.700
0.452
2.740
2.820
1.5
2885
1863
1
92.400
0.323
2.820
2.910
2.0
2853
1868
1
92.300
0.281
2.910
3.010
2.4
2449
1660
1
90.300
0.187
3.010
3.110
3.3
2751
1756
1
94.200
0.139
3.110
3.230
4.4
2658
1694
1
94.900
0.119
3.230
3.360
5.5
2469
1594
1
93.000
0.086
3.360
3.510
7.4
2371
1549
1
92.500
0.073
3.510
3.680
9.3
2055
1402
1
89.300
0.053
3.680
3.880
11.2
2174
1387
1
94.000
0.046
3.880
4.120
13.6
2063
1331
1
93.900
0.036
4.120
4.400
17.0
1893
1225
1
93.300
0.031
4.400
4.750
18.5
1773
1169
1
93.900
0.030
4.750
5.210
19.7
1633
1056
1
93.100
0.036
5.210
5.820
17.6
1561
997
1
94.000
0.045
5.820
6.720
15.5
1270
819
1
93.800
0.029
6.720
8.230
19.5
1059
707
1
90.200
0.020
8.230
11.640
31.0
871
556
1
91.900
0.014
11.640
39.8
445
285
1
89.300
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
phasing
Eric de La Fortelle
sharp-develop@globalphasing.com
http://www.globalphasing.com/sharp/
SHARP
package
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
January 10, 2014 BUILT=20140307
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.7.0032
data reduction
XDS
phasing
SHELXD
Crystal structure of a Putative exported protein (BF0058) from Bacteroides fragilis NCTC 9343 at 2.60 A resolution
1
N
N
2
N
N
3
N
N
CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.
A
ASN
41
A
ASN
20
HELX_P
A
ILE
45
A
ILE
24
1
1
5
A
LYS
56
A
LYS
35
HELX_P
A
LEU
60
A
LEU
39
5
2
5
A
SER
173
A
SER
152
HELX_P
A
SER
176
A
SER
155
5
3
4
A
SER
250
A
SER
229
HELX_P
A
ASN
259
A
ASN
238
1
4
10
A
TYR
265
A
TYR
244
HELX_P
A
SER
272
A
SER
251
1
5
8
A
ILE
314
A
ILE
293
HELX_P
A
LEU
321
A
LEU
300
1
6
8
A
ASP
343
A
ASP
322
HELX_P
A
ASN
353
A
ASN
332
1
7
11
A
ASP
358
A
ASP
337
HELX_P
A
ILE
367
A
ILE
346
1
8
10
covale
1.333
both
A
LYS
193
A
C
LYS
172
1_555
A
MSE
194
A
N
MSE
173
1_555
covale
1.333
both
A
MSE
194
A
C
MSE
173
1_555
A
ASN
195
A
N
ASN
174
1_555
covale
1.332
both
A
GLN
208
A
C
GLN
187
1_555
A
MSE
209
A
N
MSE
188
1_555
covale
1.332
both
A
MSE
209
A
C
MSE
188
1_555
A
ILE
210
A
N
ILE
189
1_555
covale
1.333
both
A
TYR
291
A
C
TYR
270
1_555
A
MSE
292
A
N
MSE
271
1_555
covale
1.335
both
A
MSE
292
A
C
MSE
271
1_555
A
LYS
293
A
N
LYS
272
1_555
covale
1.341
both
A
ASP
349
A
C
ASP
328
1_555
A
MSE
350
A
N
MSE
329
1_555
covale
1.345
both
A
MSE
350
A
C
MSE
329
1_555
A
ALA
351
A
N
ALA
330
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
PF16288 family, DUF4934, 6-bladed beta-propeller of YWTD superfamily, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION
Q5LJ40_BACFN
UNP
1
23
Q5LJ40
KELHESSTIISFKEHTDVNADSILELSFLKLQTKDSCLVKNVGLIRELNNCLLILDSANSNLYVFNKSGAFVNQIGQKGS
GPGEYILLSSFFVDNNKNYIAAIDIAQDKVLYYNATDFSFLYERRLPFSTSCCLQLEDGNLLWNSREYTDSKLSDFYFVV
TDSLFDIIDYKMNKEFKSGYTTGPSQMIYKVGTNVFAYTPFDLTIYRVGTSEIVPAHSFSFEGTDIPSLDFLNKTSNQGN
SNYLYDLIQSDYISYYCVEETERDLFVCYMKNKEKYIGLYDKNTDRTYNYPIKIFQDQLKVGELNYFSIGSVDDYHVAPL
DVLSLKDMAGNGYVFDDKLSELLTISNEEDNSILLFVRIKK
23
383
4RAA
23
383
Q5LJ40
A
1
2
362
1
expression tag
GLY
0
4RAA
A
Q5LJ40
UNP
1
5
4
4
2
4
4
4
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
31
A
ILE
10
A
PHE
34
A
PHE
13
A
GLU
234
A
GLU
213
A
PHE
243
A
PHE
222
A
ASP
224
A
ASP
203
A
GLY
231
A
GLY
210
A
ASN
216
A
ASN
195
A
THR
221
A
THR
200
A
ILE
210
A
ILE
189
A
VAL
213
A
VAL
192
A
LEU
46
A
LEU
25
A
LYS
52
A
LYS
31
A
ILE
375
A
ILE
354
A
ILE
381
A
ILE
360
A
TYR
337
A
TYR
316
A
LEU
342
A
LEU
321
A
SER
333
A
SER
312
A
VAL
334
A
VAL
313
A
LEU
66
A
LEU
45
A
LEU
70
A
LEU
49
A
CYS
73
A
CYS
52
A
ASP
78
A
ASP
57
A
ASN
83
A
ASN
62
A
ASN
88
A
ASN
67
A
PHE
93
A
PHE
72
A
GLN
96
A
GLN
75
A
GLN
99
A
GLN
78
A
LYS
100
A
LYS
79
A
GLU
106
A
GLU
85
A
TYR
107
A
TYR
86
A
PHE
114
A
PHE
93
A
VAL
115
A
VAL
94
A
TYR
121
A
TYR
100
A
ASP
126
A
ASP
105
A
LYS
131
A
LYS
110
A
ASN
136
A
ASN
115
A
PHE
142
A
PHE
121
A
ARG
147
A
ARG
126
A
CYS
155
A
CYS
134
A
GLN
157
A
GLN
136
A
LEU
163
A
LEU
142
A
ASN
166
A
ASN
145
A
PHE
178
A
PHE
157
A
THR
183
A
THR
162
A
ILE
189
A
ILE
168
A
ASN
195
A
ASN
174
A
ILE
275
A
ILE
254
A
GLU
282
A
GLU
261
A
ASP
286
A
ASP
265
A
LYS
293
A
LYS
272
A
GLU
296
A
GLU
275
A
ASP
303
A
ASP
282
A
ARG
308
A
ARG
287
A
PRO
313
A
PRO
292
BINDING SITE FOR RESIDUE PO4 A 400
A
PO4
400
Software
4
A
ARG
146
A
ARG
125
4
2_555
A
ARG
146
A
ARG
125
4
1_555
A
ARG
147
A
ARG
126
4
2_555
A
ARG
147
A
ARG
126
4
1_555
5
C 1 2 1