0.023315 0.013461 0.000000 0.000000 0.026922 0.000000 0.000000 0.000000 0.003746 0.00000 0.00000 0.00000 Mooers, B.H.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 42.890 42.890 266.936 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C Y 51 N N Y 52 N C Y 53 N N Y 54 N C N 55 N C N 56 N O N 57 N N N 58 N C N 59 N N N 60 N N Y 61 N C N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N O N 77 N H N 78 N H N 79 N K N 80 N O N 81 N P N 82 N O N 83 N O N 84 N O N 85 N C N 86 R C N 87 N O N 88 S C N 89 N O N 90 R C N 91 N O N 92 R C N 93 N N N 94 N C N 95 N O N 96 N N N 97 N C N 98 N O N 99 N C N 100 N C N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing Y 64 N sing Y 65 N sing Y 66 N doub N 67 N sing Y 68 N sing N 69 N sing Y 70 N doub N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N doub N 115 N sing N 116 N sing To be Published 0353 Structure of the Trypanosome RNA Editing U-Helix with 16 Contiguous Us US Methods Mol.Biol. 1064-3745 1240 191 216 10.1007/978-1-4939-1896-6_14 25352146 Fusion RNAs in crystallographic studies of double-stranded RNA from trypanosome RNA editing. 2015 10.2210/pdb4rbq/pdb pdb_00004rbq 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2009-05-10 ADSC QUANTUM 315r side scattering I-beam bent single crystal, asymmetric cut 4.965 degrees SINGLE WAVELENGTH M x-ray 1 0.97946 1.0 BL7-1 SSRL 0.97946 0.97946 SYNCHROTRON SSRL BEAMLINE BL7-1 10216.987 U-Helix RNA from Trypanosome editing 1 syn polymer 39.098 POTASSIUM ION 5 syn non-polymer 18.015 water 247 nat water no no AGAGAAGAAAGGGAAAUUUUUUUUUUUUUUUU AGAGAAGAAAGGGAAAUUUUUUUUUUUUUUUU A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.31 46.81 VAPOR DIFFUSION, HANGING DROP 6.5 50 mM sodium cacodylate, pH 6.5, 200 mM potassium chloride, 75 mM magnesium acetate, 900 mM lithium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 -14.972 1 20 A 1 A 32 4.472 A_A1:U32_A 1 -0.658 -0.131 -0.431 -0.101 -5.138 1 28 A 2 A 31 -2.499 A_G2:U31_A 2 -11.060 -2.354 -0.050 -0.570 -6.065 1 20 A 3 A 30 3.141 A_A3:U30_A 3 -10.587 0.027 -0.160 -0.132 -6.637 1 28 A 4 A 29 -3.186 A_G4:U29_A 4 -10.600 -2.410 -0.135 -0.612 -0.736 1 20 A 5 A 28 -0.525 A_A5:U28_A 5 -7.946 0.072 -0.031 -0.089 -3.250 1 20 A 6 A 27 1.586 A_A6:U27_A 6 -11.443 -0.016 -0.100 -0.156 -3.228 1 28 A 7 A 26 -2.476 A_G7:U26_A 7 -9.652 -2.332 -0.064 -0.562 -0.871 1 20 A 8 A 25 1.253 A_A8:U25_A 8 -7.661 0.043 -0.142 -0.104 -5.264 1 20 A 9 A 24 4.233 A_A9:U24_A 9 -12.362 0.007 -0.057 -0.068 -4.327 1 20 A 10 A 23 3.187 A_A10:U23_A 10 -12.368 -0.037 -0.054 -0.144 -4.418 1 28 A 11 A 22 -3.522 A_G11:U22_A 11 -12.068 -2.198 -0.143 -0.607 -6.134 1 28 A 12 A 21 -7.155 A_G12:U21_A 12 -10.634 -2.097 -0.180 -0.576 -3.881 1 28 A 13 A 20 -2.064 A_G13:U20_A 13 -8.685 -2.352 -0.088 -0.548 -1.010 1 20 A 14 A 19 2.178 A_A14:U19_A 14 -8.357 -0.022 -0.172 -0.114 -2.074 1 20 A 15 A 18 4.762 A_A15:U18_A 15 -12.494 0.089 -0.024 -0.094 -1.478 1 20 A 16 A 17 1.970 A_A16:U17_A 16 -13.159 -0.038 0.015 -0.093 1.478 1 20 A 17 A 16 1.970 A_U17:A16_A 17 -13.159 0.038 0.015 -0.093 2.074 1 20 A 18 A 15 4.762 A_U18:A15_A 18 -12.494 -0.089 -0.024 -0.094 1.010 1 20 A 19 A 14 2.178 A_U19:A14_A 19 -8.357 0.022 -0.172 -0.114 3.881 1 28 A 20 A 13 -2.064 A_U20:G13_A 20 -8.685 2.352 -0.088 -0.548 6.134 1 28 A 21 A 12 -7.155 A_U21:G12_A 21 -10.634 2.097 -0.180 -0.576 4.418 1 28 A 22 A 11 -3.522 A_U22:G11_A 22 -12.068 2.198 -0.143 -0.607 4.327 1 20 A 23 A 10 3.187 A_U23:A10_A 23 -12.368 0.037 -0.054 -0.144 5.264 1 20 A 24 A 9 4.233 A_U24:A9_A 24 -12.362 -0.007 -0.057 -0.068 0.871 1 20 A 25 A 8 1.253 A_U25:A8_A 25 -7.661 -0.043 -0.142 -0.104 3.228 1 28 A 26 A 7 -2.476 A_U26:G7_A 26 -9.652 2.332 -0.064 -0.562 3.250 1 20 A 27 A 6 1.586 A_U27:A6_A 27 -11.443 0.016 -0.100 -0.156 0.736 1 20 A 28 A 5 -0.525 A_U28:A5_A 28 -7.946 -0.072 -0.031 -0.089 6.637 1 28 A 29 A 4 -3.186 A_U29:G4_A 29 -10.600 2.410 -0.135 -0.612 6.065 1 20 A 30 A 3 3.141 A_U30:A3_A 30 -10.587 -0.027 -0.160 -0.132 5.138 1 28 A 31 A 2 -2.499 A_U31:G2_A 31 -11.060 2.354 -0.050 -0.570 14.972 1 20 A 32 A 1 4.472 A_U32:A1_A 32 -0.658 0.131 -0.431 -0.101 2.449 19.060 A A 1 2 12.689 A A 32 31 3.006 4.163 -0.140 -2.243 AA_A1G2:U31U32_AA 1 -1.700 5.180 18.527 -8.581 -0.314 3.107 42.089 A A 2 3 10.521 A A 31 30 3.375 7.519 0.059 -1.271 AA_G2A3:U30U31_AA 2 -0.717 1.003 41.436 -2.546 -0.156 1.677 23.974 A A 3 4 30.230 A A 30 29 3.129 12.004 0.345 -2.108 AA_A3G4:U29U30_AA 3 0.224 -0.564 20.789 -8.142 -0.773 3.106 41.726 A A 4 5 4.135 A A 29 28 3.195 2.943 0.054 -1.195 AA_G4A5:U28U29_AA 4 -0.702 0.987 41.621 -1.977 -0.147 3.063 31.438 A A 5 6 8.649 A A 28 27 3.329 4.667 0.188 -1.632 AA_A5A6:U27U28_AA 5 1.799 -3.335 31.047 -3.871 -0.016 2.212 25.953 A A 6 7 20.586 A A 27 26 3.062 9.031 -0.161 -1.922 AA_A6G7:U26U27_AA 6 -3.339 7.610 24.130 -6.364 -0.411 3.038 40.260 A A 7 8 10.855 A A 26 25 3.322 7.431 0.066 -1.287 AA_G7A8:U25U26_AA 7 -1.220 1.782 39.578 -2.695 -0.231 2.668 32.716 A A 8 9 20.427 A A 25 24 3.379 11.269 0.625 -1.647 AA_A8A9:U24U25_AA 8 2.684 -4.866 30.648 -4.785 -0.665 2.976 32.681 A A 9 10 10.088 A A 24 23 3.243 5.648 -0.213 -1.256 AA_A9A10:U23U24_AA 9 1.238 -2.211 32.179 -3.168 0.584 2.309 26.217 A A 10 11 20.991 A A 23 22 3.092 9.317 -0.169 -1.691 AA_A10G11:U22U23_AA 10 -1.181 2.660 24.505 -5.881 0.100 2.896 32.759 A A 11 12 10.130 A A 22 21 3.255 5.682 0.041 -1.801 AA_G11G12:U21U22_AA 11 -2.031 3.621 32.213 -4.122 -0.405 2.502 33.639 A A 12 13 14.117 A A 21 20 3.107 8.080 0.558 -1.907 AA_G12G13:U20U21_AA 12 -3.499 6.114 32.499 -4.447 -1.462 2.970 40.283 A A 13 14 12.086 A A 20 19 3.301 8.268 0.020 -1.343 AA_G13A14:U19U20_AA 13 -1.170 1.710 39.443 -2.856 -0.158 2.715 32.697 A A 14 15 19.206 A A 19 18 3.305 10.621 0.488 -1.390 AA_A14A15:U18U19_AA 14 1.726 -3.121 30.921 -4.209 -0.583 2.870 33.046 A A 15 16 11.720 A A 18 17 3.211 6.623 -0.190 -1.394 AA_A15A16:U17U18_AA 15 1.094 -1.936 32.376 -3.503 0.508 2.939 31.166 A A 16 17 9.053 A A 17 16 3.201 4.845 0.000 -1.485 AA_A16U17:A16U17_AA 16 0.000 0.000 30.796 -3.635 0.000 2.870 33.046 A A 17 18 11.720 A A 16 15 3.211 6.623 0.190 -1.394 AA_U17U18:A15A16_AA 17 -1.094 1.936 32.376 -3.503 -0.508 2.715 32.697 A A 18 19 19.206 A A 15 14 3.305 10.621 -0.488 -1.390 AA_U18U19:A14A15_AA 18 -1.726 3.121 30.921 -4.209 0.583 2.970 40.283 A A 19 20 12.086 A A 14 13 3.301 8.268 -0.020 -1.343 AA_U19U20:G13A14_AA 19 1.170 -1.710 39.443 -2.856 0.158 2.502 33.639 A A 20 21 14.117 A A 13 12 3.107 8.080 -0.558 -1.907 AA_U20U21:G12G13_AA 20 3.499 -6.114 32.499 -4.447 1.462 2.896 32.759 A A 21 22 10.130 A A 12 11 3.255 5.682 -0.041 -1.801 AA_U21U22:G11G12_AA 21 2.031 -3.621 32.213 -4.122 0.405 2.309 26.217 A A 22 23 20.991 A A 11 10 3.092 9.317 0.169 -1.691 AA_U22U23:A10G11_AA 22 1.181 -2.660 24.505 -5.881 -0.100 2.976 32.681 A A 23 24 10.088 A A 10 9 3.243 5.648 0.213 -1.256 AA_U23U24:A9A10_AA 23 -1.238 2.211 32.179 -3.168 -0.584 2.668 32.716 A A 24 25 20.427 A A 9 8 3.379 11.269 -0.625 -1.647 AA_U24U25:A8A9_AA 24 -2.684 4.866 30.648 -4.785 0.665 3.038 40.260 A A 25 26 10.855 A A 8 7 3.322 7.431 -0.066 -1.287 AA_U25U26:G7A8_AA 25 1.220 -1.782 39.578 -2.695 0.231 2.212 25.953 A A 26 27 20.586 A A 7 6 3.062 9.031 0.161 -1.922 AA_U26U27:A6G7_AA 26 3.339 -7.610 24.130 -6.364 0.411 3.063 31.438 A A 27 28 8.649 A A 6 5 3.329 4.667 -0.188 -1.632 AA_U27U28:A5A6_AA 27 -1.799 3.335 31.047 -3.871 0.016 3.106 41.726 A A 28 29 4.135 A A 5 4 3.195 2.943 -0.054 -1.195 AA_U28U29:G4A5_AA 28 0.702 -0.987 41.621 -1.977 0.147 1.677 23.974 A A 29 30 30.230 A A 4 3 3.129 12.004 -0.345 -2.108 AA_U29U30:A3G4_AA 29 -0.224 0.564 20.789 -8.142 0.773 3.107 42.089 A A 30 31 10.521 A A 3 2 3.375 7.519 -0.059 -1.271 AA_U30U31:G2A3_AA 30 0.717 -1.003 41.436 -2.546 0.156 2.449 19.060 A A 31 32 12.689 A A 2 1 3.006 4.163 0.140 -2.243 AA_U31U32:A1G2_AA 31 1.700 -5.180 18.527 -8.581 0.314 software chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site pdbx_initial_refinement_model repository Initial release Refinement description Data collection Database references Derived calculations Refinement description 1 0 2015-11-11 1 1 2017-11-22 1 2 2024-02-28 1 3 2024-04-03 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id U-helix 16-mer dsRNA RCSB Y RCSB 2014-09-12 REL REL K POTASSIUM ION HOH water 32630 synthetic construct sample IDEAL A-FORM RNA Other in silico model K 91 2 K K 101 A K 92 2 K K 102 A K 93 2 K K 103 A K 94 2 K K 104 A K 95 2 K K 105 A HOH 101 3 HOH HOH 201 A HOH 102 3 HOH HOH 202 A HOH 103 3 HOH HOH 203 A HOH 104 3 HOH HOH 204 A HOH 105 3 HOH HOH 205 A HOH 108 3 HOH HOH 206 A HOH 109 3 HOH HOH 207 A HOH 110 3 HOH HOH 208 A HOH 111 3 HOH HOH 209 A HOH 112 3 HOH HOH 210 A HOH 114 3 HOH HOH 211 A HOH 115 3 HOH HOH 212 A HOH 116 3 HOH HOH 213 A HOH 117 3 HOH HOH 214 A HOH 118 3 HOH HOH 215 A HOH 119 3 HOH HOH 216 A HOH 120 3 HOH HOH 217 A HOH 121 3 HOH HOH 218 A HOH 122 3 HOH HOH 219 A HOH 123 3 HOH HOH 220 A HOH 124 3 HOH HOH 221 A HOH 125 3 HOH HOH 222 A HOH 126 3 HOH HOH 223 A HOH 127 3 HOH HOH 224 A HOH 128 3 HOH HOH 225 A HOH 129 3 HOH HOH 226 A HOH 130 3 HOH HOH 227 A HOH 131 3 HOH HOH 228 A HOH 132 3 HOH HOH 229 A HOH 133 3 HOH HOH 230 A HOH 134 3 HOH HOH 231 A HOH 135 3 HOH HOH 232 A HOH 136 3 HOH HOH 233 A HOH 137 3 HOH HOH 234 A HOH 138 3 HOH HOH 235 A HOH 139 3 HOH HOH 236 A HOH 140 3 HOH HOH 237 A HOH 141 3 HOH HOH 238 A HOH 142 3 HOH HOH 239 A HOH 143 3 HOH HOH 240 A HOH 144 3 HOH HOH 241 A HOH 145 3 HOH HOH 242 A HOH 146 3 HOH HOH 243 A HOH 147 3 HOH HOH 244 A HOH 148 3 HOH HOH 245 A HOH 149 3 HOH HOH 246 A HOH 150 3 HOH HOH 247 A HOH 151 3 HOH HOH 248 A HOH 152 3 HOH HOH 249 A HOH 153 3 HOH HOH 250 A HOH 154 3 HOH HOH 251 A HOH 155 3 HOH HOH 252 A HOH 156 3 HOH HOH 253 A HOH 157 3 HOH HOH 254 A HOH 158 3 HOH HOH 255 A HOH 159 3 HOH HOH 256 A HOH 160 3 HOH HOH 257 A HOH 161 3 HOH HOH 258 A HOH 162 3 HOH HOH 259 A HOH 163 3 HOH HOH 260 A HOH 164 3 HOH HOH 261 A HOH 165 3 HOH HOH 262 A HOH 166 3 HOH HOH 263 A HOH 167 3 HOH HOH 264 A HOH 168 3 HOH HOH 265 A HOH 169 3 HOH HOH 266 A HOH 170 3 HOH HOH 267 A HOH 171 3 HOH HOH 268 A HOH 172 3 HOH HOH 269 A HOH 173 3 HOH HOH 270 A HOH 174 3 HOH HOH 271 A HOH 175 3 HOH HOH 272 A HOH 176 3 HOH HOH 273 A HOH 177 3 HOH HOH 274 A HOH 178 3 HOH HOH 275 A HOH 179 3 HOH HOH 276 A HOH 180 3 HOH HOH 277 A HOH 181 3 HOH HOH 278 A HOH 182 3 HOH HOH 279 A HOH 183 3 HOH HOH 280 A HOH 184 3 HOH HOH 281 A HOH 185 3 HOH HOH 282 A HOH 186 3 HOH HOH 283 A HOH 187 3 HOH HOH 284 A HOH 188 3 HOH HOH 285 A HOH 189 3 HOH HOH 286 A HOH 190 3 HOH HOH 287 A HOH 191 3 HOH HOH 288 A HOH 192 3 HOH HOH 289 A HOH 193 3 HOH HOH 290 A HOH 194 3 HOH HOH 291 A HOH 195 3 HOH HOH 292 A HOH 196 3 HOH HOH 293 A HOH 197 3 HOH HOH 294 A HOH 198 3 HOH HOH 295 A HOH 199 3 HOH HOH 296 A HOH 200 3 HOH HOH 297 A HOH 201 3 HOH HOH 298 A HOH 202 3 HOH HOH 299 A HOH 203 3 HOH HOH 300 A HOH 204 3 HOH HOH 301 A HOH 205 3 HOH HOH 302 A HOH 206 3 HOH HOH 303 A HOH 207 3 HOH HOH 304 A HOH 208 3 HOH HOH 305 A HOH 209 3 HOH HOH 306 A HOH 210 3 HOH HOH 307 A HOH 211 3 HOH HOH 308 A HOH 212 3 HOH HOH 309 A HOH 213 3 HOH HOH 310 A HOH 214 3 HOH HOH 311 A HOH 215 3 HOH HOH 312 A HOH 216 3 HOH HOH 313 A HOH 217 3 HOH HOH 314 A HOH 218 3 HOH HOH 315 A HOH 219 3 HOH HOH 316 A HOH 220 3 HOH HOH 317 A HOH 221 3 HOH HOH 318 A HOH 222 3 HOH HOH 319 A HOH 223 3 HOH HOH 320 A HOH 225 3 HOH HOH 321 A HOH 226 3 HOH HOH 322 A HOH 227 3 HOH HOH 323 A HOH 228 3 HOH HOH 324 A HOH 229 3 HOH HOH 325 A HOH 230 3 HOH HOH 326 A HOH 231 3 HOH HOH 327 A HOH 232 3 HOH HOH 328 A HOH 233 3 HOH HOH 329 A HOH 234 3 HOH HOH 330 A HOH 235 3 HOH HOH 331 A HOH 236 3 HOH HOH 332 A HOH 237 3 HOH HOH 333 A HOH 238 3 HOH HOH 334 A HOH 239 3 HOH HOH 335 A HOH 240 3 HOH HOH 336 A HOH 241 3 HOH HOH 337 A HOH 242 3 HOH HOH 338 A HOH 243 3 HOH HOH 339 A HOH 244 3 HOH HOH 340 A HOH 245 3 HOH HOH 341 A HOH 246 3 HOH HOH 342 A HOH 247 3 HOH HOH 343 A HOH 248 3 HOH HOH 344 A HOH 249 3 HOH HOH 345 A HOH 250 3 HOH HOH 346 A HOH 251 3 HOH HOH 347 A HOH 252 3 HOH HOH 348 A HOH 253 3 HOH HOH 349 A HOH 254 3 HOH HOH 350 A HOH 255 3 HOH HOH 351 A HOH 256 3 HOH HOH 352 A HOH 257 3 HOH HOH 353 A HOH 258 3 HOH HOH 354 A HOH 259 3 HOH HOH 355 A HOH 260 3 HOH HOH 356 A HOH 261 3 HOH HOH 357 A HOH 262 3 HOH HOH 358 A HOH 263 3 HOH HOH 359 A HOH 264 3 HOH HOH 360 A HOH 265 3 HOH HOH 361 A HOH 266 3 HOH HOH 362 A HOH 267 3 HOH HOH 363 A HOH 269 3 HOH HOH 364 A HOH 270 3 HOH HOH 365 A HOH 271 3 HOH HOH 366 A HOH 272 3 HOH HOH 367 A HOH 274 3 HOH HOH 368 A HOH 275 3 HOH HOH 369 A HOH 277 3 HOH HOH 370 A HOH 278 3 HOH HOH 371 A HOH 279 3 HOH HOH 372 A HOH 280 3 HOH HOH 373 A HOH 281 3 HOH HOH 374 A HOH 282 3 HOH HOH 375 A HOH 283 3 HOH HOH 376 A HOH 284 3 HOH HOH 377 A HOH 285 3 HOH HOH 378 A HOH 286 3 HOH HOH 379 A HOH 287 3 HOH HOH 380 A HOH 288 3 HOH HOH 381 A HOH 289 3 HOH HOH 382 A HOH 290 3 HOH HOH 383 A HOH 291 3 HOH HOH 384 A HOH 293 3 HOH HOH 385 A HOH 294 3 HOH HOH 386 A HOH 295 3 HOH HOH 387 A HOH 296 3 HOH HOH 388 A HOH 297 3 HOH HOH 389 A HOH 298 3 HOH HOH 390 A HOH 300 3 HOH HOH 391 A HOH 301 3 HOH HOH 392 A HOH 302 3 HOH HOH 393 A HOH 303 3 HOH HOH 394 A HOH 304 3 HOH HOH 395 A HOH 306 3 HOH HOH 396 A HOH 307 3 HOH HOH 397 A HOH 308 3 HOH HOH 398 A HOH 309 3 HOH HOH 399 A HOH 310 3 HOH HOH 400 A HOH 311 3 HOH HOH 401 A HOH 312 3 HOH HOH 402 A HOH 313 3 HOH HOH 403 A HOH 314 3 HOH HOH 404 A HOH 315 3 HOH HOH 405 A HOH 316 3 HOH HOH 406 A HOH 317 3 HOH HOH 407 A HOH 318 3 HOH HOH 408 A HOH 319 3 HOH HOH 409 A HOH 320 3 HOH HOH 410 A HOH 321 3 HOH HOH 411 A HOH 323 3 HOH HOH 412 A HOH 324 3 HOH HOH 413 A HOH 325 3 HOH HOH 414 A HOH 326 3 HOH HOH 415 A HOH 327 3 HOH HOH 416 A HOH 328 3 HOH HOH 417 A HOH 329 3 HOH HOH 418 A HOH 330 3 HOH HOH 419 A HOH 331 3 HOH HOH 420 A HOH 332 3 HOH HOH 421 A HOH 333 3 HOH HOH 422 A HOH 334 3 HOH HOH 423 A HOH 335 3 HOH HOH 424 A HOH 336 3 HOH HOH 425 A HOH 337 3 HOH HOH 426 A HOH 338 3 HOH HOH 427 A HOH 339 3 HOH HOH 428 A HOH 340 3 HOH HOH 429 A HOH 341 3 HOH HOH 430 A HOH 342 3 HOH HOH 431 A HOH 344 3 HOH HOH 432 A HOH 345 3 HOH HOH 433 A HOH 346 3 HOH HOH 434 A HOH 347 3 HOH HOH 435 A HOH 348 3 HOH HOH 436 A HOH 349 3 HOH HOH 437 A HOH 350 3 HOH HOH 438 A HOH 351 3 HOH HOH 439 A HOH 352 3 HOH HOH 440 A HOH 355 3 HOH HOH 441 A HOH 356 3 HOH HOH 442 A HOH 357 3 HOH HOH 443 A HOH 358 3 HOH HOH 444 A HOH 359 3 HOH HOH 445 A HOH 360 3 HOH HOH 446 A HOH 361 3 HOH HOH 447 A A 1 n 1 A 1 A G 2 n 2 G 2 A A 3 n 3 A 3 A G 4 n 4 G 4 A A 5 n 5 A 5 A A 6 n 6 A 6 A G 7 n 7 G 7 A A 8 n 8 A 8 A A 9 n 9 A 9 A A 10 n 10 A 10 A G 11 n 11 G 11 A G 12 n 12 G 12 A G 13 n 13 G 13 A A 14 n 14 A 14 A A 15 n 15 A 15 A A 16 n 16 A 16 A U 17 n 17 U 17 A U 18 n 18 U 18 A U 19 n 19 U 19 A U 20 n 20 U 20 A U 21 n 21 U 21 A U 22 n 22 U 22 A U 23 n 23 U 23 A U 24 n 24 U 24 A U 25 n 25 U 25 A U 26 n 26 U 26 A U 27 n 27 U 27 A U 28 n 28 U 28 A U 29 n 29 U 29 A U 30 n 30 U 30 A U 31 n 31 U 31 A U 32 n 32 U 32 A author_and_software_defined_assembly PISA 2 dimeric 2920 -29 11420 A A 10 A OP1 A 10 1_555 A K 101 B K K 1_555 A HOH 432 B G O HOH 1_555 67.5 A A 10 A OP1 A 10 1_555 A K 101 B K K 1_555 A HOH 432 A G O HOH 1_555 92.5 A HOH 432 B G O HOH 1_555 A K 101 B K K 1_555 A HOH 432 A G O HOH 1_555 35.6 A A 16 A OP1 A 16 1_555 A K 102 C K K 1_555 A HOH 320 G O HOH 1_555 70.2 A U 20 A O2' U 20 1_555 A K 105 F K K 1_555 A HOH 225 G O HOH 1_555 71.1 A U 21 A OP1 U 21 1_555 A K 104 E K K 1_555 A HOH 404 G O HOH 1_555 49.6 A U 31 A O2' U 31 1_555 A K 103 D K K 1_555 A U 31 A O3' U 31 1_555 52.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 5_555 x-y,-y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 A K 101 B K 1 A K 102 C K 1 A K 103 D K 1 A K 104 E K 1 A K 105 F K 1 A HOH 202 G HOH 1 A HOH 205 G HOH 1 A HOH 212 G HOH 1 A HOH 216 G HOH 1 A HOH 221 G HOH 1 A HOH 225 G HOH 1 A HOH 226 G HOH 1 A HOH 319 G HOH 1 A HOH 361 G HOH 1.00070 -0.00000 0.00000 1.00070 0.00000 -2.00130 0.1537 0.1307 0.1312 1.050 36.790 921 44972 2.05 99.26 0.10 1 0.23 MOLECULAR REPLACEMENT 16.19 0.90 1.11 IDEAL A-FORM RNA ML FLAT BULK SOLVENT MODEL 1.050 36.790 247 927 5 675 0 0.004 754 0.898 1172 5.895 380 0.034 159 0.012 32 0.2600 0.2776 1.0809 163 6876 99.00 0.2098 0.2016 1.1158 117 6998 100.00 0.2251 0.1643 1.1557 124 6999 100.00 0.1575 0.1447 1.2020 138 6928 100.00 0.1778 0.1328 1.2567 164 6994 100.00 0.1657 0.1367 1.3229 140 6922 100.00 0.1616 0.1305 1.4058 154 6953 100.00 0.1526 0.1221 1.5143 148 7007 100.00 0.1250 0.1196 1.6667 144 6963 100.00 0.1320 0.1141 1.9079 153 6950 100.00 0.1607 0.1288 2.4037 160 6769 97.00 0.1486 0.1251 36.8122 138 6804 97.00 9.50 1.050 36.8 4RBQ 45101 45101 2.0 2.0 0.057 0.057 1 20.1 4.0 100.0 1.050 1 data collection Blu-Ice phasing MOLREP refinement PHENIX (PHENIX.REFINE: 1.7.3_927) data reduction MOSFLM 32 base pair oligo(U) RNA 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N metalc 2.862 A A 10 A OP1 A 10 1_555 A K 101 B K K 1_555 metalc 2.857 A A 16 A OP1 A 16 1_555 A K 102 C K K 1_555 metalc 2.841 A U 20 A O2' U 20 1_555 A K 105 F K K 1_555 metalc 2.869 A U 21 A OP1 U 21 1_555 A K 104 E K K 1_555 metalc 2.847 A U 31 A O2' U 31 1_555 A K 103 D K K 1_555 metalc 3.413 A U 31 A O3' U 31 1_555 A K 103 D K K 1_555 metalc 3.152 B A K 101 B K K 1_555 A HOH 432 G O HOH 1_555 metalc 3.228 A A K 101 B K K 1_555 A HOH 432 G O HOH 1_555 metalc 2.947 A K 102 C K K 1_555 A HOH 320 G O HOH 1_555 metalc 3.489 A K 104 E K K 1_555 A HOH 404 G O HOH 1_555 metalc 3.251 A K 105 F K K 1_555 A HOH 225 G O HOH 1_555 hydrog WATSON-CRICK A A 1 A N1 A 1 1_555 A U 32 A N3 U 32 5_555 hydrog WATSON-CRICK A A 1 A N6 A 1 1_555 A U 32 A O4 U 32 5_555 hydrog TYPE_28_PAIR A G 2 A N1 G 2 1_555 A U 31 A O2 U 31 5_555 hydrog TYPE_28_PAIR A G 2 A O6 G 2 1_555 A U 31 A N3 U 31 5_555 hydrog WATSON-CRICK A A 3 A N1 A 3 1_555 A U 30 A N3 U 30 5_555 hydrog WATSON-CRICK A A 3 A N6 A 3 1_555 A U 30 A O4 U 30 5_555 hydrog TYPE_28_PAIR A G 4 A N1 G 4 1_555 A U 29 A O2 U 29 5_555 hydrog TYPE_28_PAIR A G 4 A O6 G 4 1_555 A U 29 A N3 U 29 5_555 hydrog WATSON-CRICK A A 5 A N1 A 5 1_555 A U 28 A N3 U 28 5_555 hydrog WATSON-CRICK A A 5 A N6 A 5 1_555 A U 28 A O4 U 28 5_555 hydrog WATSON-CRICK A A 6 A N1 A 6 1_555 A U 27 A N3 U 27 5_555 hydrog WATSON-CRICK A A 6 A N6 A 6 1_555 A U 27 A O4 U 27 5_555 hydrog TYPE_28_PAIR A G 7 A N1 G 7 1_555 A U 26 A O2 U 26 5_555 hydrog TYPE_28_PAIR A G 7 A O6 G 7 1_555 A U 26 A N3 U 26 5_555 hydrog WATSON-CRICK A A 8 A N1 A 8 1_555 A U 25 A N3 U 25 5_555 hydrog WATSON-CRICK A A 8 A N6 A 8 1_555 A U 25 A O4 U 25 5_555 hydrog WATSON-CRICK A A 9 A N1 A 9 1_555 A U 24 A N3 U 24 5_555 hydrog WATSON-CRICK A A 9 A N6 A 9 1_555 A U 24 A O4 U 24 5_555 hydrog WATSON-CRICK A A 10 A N1 A 10 1_555 A U 23 A N3 U 23 5_555 hydrog WATSON-CRICK A A 10 A N6 A 10 1_555 A U 23 A O4 U 23 5_555 hydrog TYPE_28_PAIR A G 11 A N1 G 11 1_555 A U 22 A O2 U 22 5_555 hydrog TYPE_28_PAIR A G 11 A O6 G 11 1_555 A U 22 A N3 U 22 5_555 hydrog TYPE_28_PAIR A G 12 A N1 G 12 1_555 A U 21 A O2 U 21 5_555 hydrog TYPE_28_PAIR A G 12 A O6 G 12 1_555 A U 21 A N3 U 21 5_555 hydrog TYPE_28_PAIR A G 13 A N1 G 13 1_555 A U 20 A O2 U 20 5_555 hydrog TYPE_28_PAIR A G 13 A O6 G 13 1_555 A U 20 A N3 U 20 5_555 hydrog WATSON-CRICK A A 14 A N1 A 14 1_555 A U 19 A N3 U 19 5_555 hydrog WATSON-CRICK A A 14 A N6 A 14 1_555 A U 19 A O4 U 19 5_555 hydrog WATSON-CRICK A A 15 A N1 A 15 1_555 A U 18 A N3 U 18 5_555 hydrog WATSON-CRICK A A 15 A N6 A 15 1_555 A U 18 A O4 U 18 5_555 hydrog WATSON-CRICK A A 16 A N1 A 16 1_555 A U 17 A N3 U 17 5_555 hydrog WATSON-CRICK A A 16 A N6 A 16 1_555 A U 17 A O4 U 17 5_555 hydrog WATSON-CRICK A U 17 A N3 U 17 1_555 A A 16 A N1 A 16 5_555 hydrog WATSON-CRICK A U 17 A O4 U 17 1_555 A A 16 A N6 A 16 5_555 hydrog WATSON-CRICK A U 18 A N3 U 18 1_555 A A 15 A N1 A 15 5_555 hydrog WATSON-CRICK A U 18 A O4 U 18 1_555 A A 15 A N6 A 15 5_555 hydrog WATSON-CRICK A U 19 A N3 U 19 1_555 A A 14 A N1 A 14 5_555 hydrog WATSON-CRICK A U 19 A O4 U 19 1_555 A A 14 A N6 A 14 5_555 hydrog TYPE_28_PAIR A U 20 A N3 U 20 1_555 A G 13 A O6 G 13 5_555 hydrog TYPE_28_PAIR A U 20 A O2 U 20 1_555 A G 13 A N1 G 13 5_555 hydrog TYPE_28_PAIR A U 21 A N3 U 21 1_555 A G 12 A O6 G 12 5_555 hydrog TYPE_28_PAIR A U 21 A O2 U 21 1_555 A G 12 A N1 G 12 5_555 hydrog TYPE_28_PAIR A U 22 A N3 U 22 1_555 A G 11 A O6 G 11 5_555 hydrog TYPE_28_PAIR A U 22 A O2 U 22 1_555 A G 11 A N1 G 11 5_555 hydrog WATSON-CRICK A U 23 A N3 U 23 1_555 A A 10 A N1 A 10 5_555 hydrog WATSON-CRICK A U 23 A O4 U 23 1_555 A A 10 A N6 A 10 5_555 hydrog WATSON-CRICK A U 24 A N3 U 24 1_555 A A 9 A N1 A 9 5_555 hydrog WATSON-CRICK A U 24 A O4 U 24 1_555 A A 9 A N6 A 9 5_555 hydrog WATSON-CRICK A U 25 A N3 U 25 1_555 A A 8 A N1 A 8 5_555 hydrog WATSON-CRICK A U 25 A O4 U 25 1_555 A A 8 A N6 A 8 5_555 hydrog TYPE_28_PAIR A U 26 A N3 U 26 1_555 A G 7 A O6 G 7 5_555 hydrog TYPE_28_PAIR A U 26 A O2 U 26 1_555 A G 7 A N1 G 7 5_555 hydrog WATSON-CRICK A U 27 A N3 U 27 1_555 A A 6 A N1 A 6 5_555 hydrog WATSON-CRICK A U 27 A O4 U 27 1_555 A A 6 A N6 A 6 5_555 hydrog WATSON-CRICK A U 28 A N3 U 28 1_555 A A 5 A N1 A 5 5_555 hydrog WATSON-CRICK A U 28 A O4 U 28 1_555 A A 5 A N6 A 5 5_555 hydrog TYPE_28_PAIR A U 29 A N3 U 29 1_555 A G 4 A O6 G 4 5_555 hydrog TYPE_28_PAIR A U 29 A O2 U 29 1_555 A G 4 A N1 G 4 5_555 hydrog WATSON-CRICK A U 30 A N3 U 30 1_555 A A 3 A N1 A 3 5_555 hydrog WATSON-CRICK A U 30 A O4 U 30 1_555 A A 3 A N6 A 3 5_555 hydrog TYPE_28_PAIR A U 31 A N3 U 31 1_555 A G 2 A O6 G 2 5_555 hydrog TYPE_28_PAIR A U 31 A O2 U 31 1_555 A G 2 A N1 G 2 5_555 hydrog WATSON-CRICK A U 32 A N3 U 32 1_555 A A 1 A N1 A 1 5_555 hydrog WATSON-CRICK A U 32 A O4 U 32 1_555 A A 1 A N6 A 1 5_555 RNA double helix, oligoU, 3' U-tail, atomic resolution, A-form RNA, Trypanosome RNA editing substrate, mitochondrion, RNA 4RBQ PDB 1 1 4RBQ AGAGAAGAAAGGGAAAUUUUUUUUUUUUUUUU 1 32 4RBQ 1 32 4RBQ A 1 1 32 BINDING SITE FOR RESIDUE K A 101 A K 101 Software 3 BINDING SITE FOR RESIDUE K A 102 A K 102 Software 6 BINDING SITE FOR RESIDUE K A 103 A K 103 Software 3 BINDING SITE FOR RESIDUE K A 104 A K 104 Software 3 BINDING SITE FOR RESIDUE K A 105 A K 105 Software 3 A A 10 A A 10 3 1_555 A A 10 A A 10 3 3_665 A A 10 A A 10 3 2_655 A A 16 A A 16 6 2_545 A A 16 A A 16 6 3_655 A A 16 A A 16 6 1_555 A HOH 320 G HOH 6 1_555 A HOH 320 G HOH 6 3_655 A HOH 320 G HOH 6 2_545 A U 31 A U 31 3 1_555 A U 31 A U 31 3 3_665 A U 31 A U 31 3 2_655 A U 21 A U 21 3 1_555 A U 21 A U 21 3 3_665 A U 21 A U 21 3 2_655 A U 20 A U 20 3 1_555 A U 20 A U 20 3 3_665 A U 20 A U 20 3 2_655 155 H 3 2