0.008560 0.004942 0.000000 0.000000 0.009884 0.000000 0.000000 0.000000 0.015605 0.00000 0.00000 0.00000 Chun, S. Sawaya, M.R. Yeates, T.O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 36 90.000 90.000 120.000 116.820 116.820 64.080 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C N 241 N C N 242 N C N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 N C N 258 N O N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N S N 268 N O N 269 N O N 270 N O N 271 N O N 272 N N N 273 S C N 274 N C N 275 N O N 276 R C N 277 N O N 278 N C N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N N N 290 S C N 291 N C N 292 N O N 293 N C Y 294 N C Y 295 N C Y 296 N C Y 297 N C Y 298 N C Y 299 N C N 300 N O N 301 N O N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N N N 314 S C N 315 N C N 316 N O N 317 N C N 318 N C N 319 N C N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing Y 285 N doub Y 286 N sing Y 287 N sing N 288 N sing Y 289 N doub N 290 N sing Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 112 2990 2995 10.1073/pnas.1423672112 25713376 Selective molecular transport through the protein shell of a bacterial microcompartment organelle. 2015 10.2210/pdb4rbt/pdb pdb_00004rbt 100 1 PIXEL 2014-04-03 DECTRIS PILATUS 6M-F SINGLE WAVELENGTH M x-ray 1 0.97920 1.0 24-ID-C APS 0.97920 SYNCHROTRON APS BEAMLINE 24-ID-C 10401.016 Propanediol utilization protein PduA UNP residues 2-94 K26A, S40L 3 man polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 4 nat water no no MHHHHHHQQEALGMVETKGLTAAIEAADAMVASANVMLVGYEKIGLGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAV HVIPRPHTDVEKILPKGISQ MHHHHHHQQEALGMVETKGLTAAIEAADAMVASANVMLVGYEKIGLGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAV HVIPRPHTDVEKILPKGISQ A,B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n LT2 sample PduA, STM2038 99287 Salmonella enterica subsp. enterica serovar Typhimurium 469008 Escherichia coli BL21 CodonPlus(DE3)-RIL plasmid pET22b+ 1 2.02 39.19 VAPOR DIFFUSION, HANGING DROP 6.5 0.1M MES sodium salt pH 6.5, 2.0M Ammonium sulfate, 5% w/v PEG 400, vapor diffusion, hanging drop, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Database references Database references Data collection Database references Derived calculations Refinement description 1 0 2015-02-18 1 1 2015-03-11 1 2 2015-03-25 1 3 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Different pore mutant Different pore mutant RCSB Y RCSB 2014-09-12 REL REL SO4 SULFATE ION HOH water 3NGK PDB experimental model SO4 5 2 SO4 SO4 101 A HOH 4 3 HOH HOH 201 A HOH 5 3 HOH HOH 202 A HOH 3 3 HOH HOH 101 C HOH 7 3 HOH HOH 102 C Phaser MODE: MR_AUTO n 1 -5 A n 2 -4 A n 3 -3 A n 4 -2 A n 5 -1 A n 6 0 A n 7 1 A GLN 2 n 8 GLN 2 A GLN 3 n 9 GLN 3 A GLU 4 n 10 GLU 4 A ALA 5 n 11 ALA 5 A LEU 6 n 12 LEU 6 A GLY 7 n 13 GLY 7 A MET 8 n 14 MET 8 A VAL 9 n 15 VAL 9 A GLU 10 n 16 GLU 10 A THR 11 n 17 THR 11 A LYS 12 n 18 LYS 12 A GLY 13 n 19 GLY 13 A LEU 14 n 20 LEU 14 A THR 15 n 21 THR 15 A ALA 16 n 22 ALA 16 A ALA 17 n 23 ALA 17 A ILE 18 n 24 ILE 18 A GLU 19 n 25 GLU 19 A ALA 20 n 26 ALA 20 A ALA 21 n 27 ALA 21 A ASP 22 n 28 ASP 22 A ALA 23 n 29 ALA 23 A MET 24 n 30 MET 24 A VAL 25 n 31 VAL 25 A ALA 26 n 32 ALA 26 A SER 27 n 33 SER 27 A ALA 28 n 34 ALA 28 A ASN 29 n 35 ASN 29 A VAL 30 n 36 VAL 30 A MET 31 n 37 MET 31 A LEU 32 n 38 LEU 32 A VAL 33 n 39 VAL 33 A GLY 34 n 40 GLY 34 A TYR 35 n 41 TYR 35 A GLU 36 n 42 GLU 36 A LYS 37 n 43 LYS 37 A ILE 38 n 44 ILE 38 A GLY 39 n 45 GLY 39 A LEU 40 n 46 LEU 40 A GLY 41 n 47 GLY 41 A LEU 42 n 48 LEU 42 A VAL 43 n 49 VAL 43 A THR 44 n 50 THR 44 A VAL 45 n 51 VAL 45 A ILE 46 n 52 ILE 46 A VAL 47 n 53 VAL 47 A ARG 48 n 54 ARG 48 A GLY 49 n 55 GLY 49 A ASP 50 n 56 ASP 50 A VAL 51 n 57 VAL 51 A GLY 52 n 58 GLY 52 A ALA 53 n 59 ALA 53 A VAL 54 n 60 VAL 54 A LYS 55 n 61 LYS 55 A ALA 56 n 62 ALA 56 A ALA 57 n 63 ALA 57 A THR 58 n 64 THR 58 A ASP 59 n 65 ASP 59 A ALA 60 n 66 ALA 60 A GLY 61 n 67 GLY 61 A ALA 62 n 68 ALA 62 A ALA 63 n 69 ALA 63 A ALA 64 n 70 ALA 64 A ALA 65 n 71 ALA 65 A ARG 66 n 72 ARG 66 A ASN 67 n 73 ASN 67 A VAL 68 n 74 VAL 68 A GLY 69 n 75 GLY 69 A GLU 70 n 76 GLU 70 A VAL 71 n 77 VAL 71 A LYS 72 n 78 LYS 72 A ALA 73 n 79 ALA 73 A VAL 74 n 80 VAL 74 A HIS 75 n 81 HIS 75 A VAL 76 n 82 VAL 76 A ILE 77 n 83 ILE 77 A PRO 78 n 84 PRO 78 A ARG 79 n 85 ARG 79 A PRO 80 n 86 PRO 80 A HIS 81 n 87 HIS 81 A THR 82 n 88 THR 82 A ASP 83 n 89 ASP 83 A VAL 84 n 90 VAL 84 A GLU 85 n 91 GLU 85 A LYS 86 n 92 LYS 86 A ILE 87 n 93 ILE 87 A LEU 88 n 94 LEU 88 A PRO 89 n 95 PRO 89 A LYS 90 n 96 LYS 90 A n 97 91 A n 98 92 A n 99 93 A n 100 94 A n 1 -5 B n 2 -4 B n 3 -3 B n 4 -2 B n 5 -1 B n 6 0 B n 7 1 B n 8 2 B n 9 3 B GLU 4 n 10 GLU 4 B ALA 5 n 11 ALA 5 B LEU 6 n 12 LEU 6 B GLY 7 n 13 GLY 7 B MET 8 n 14 MET 8 B VAL 9 n 15 VAL 9 B GLU 10 n 16 GLU 10 B THR 11 n 17 THR 11 B LYS 12 n 18 LYS 12 B GLY 13 n 19 GLY 13 B LEU 14 n 20 LEU 14 B THR 15 n 21 THR 15 B ALA 16 n 22 ALA 16 B ALA 17 n 23 ALA 17 B ILE 18 n 24 ILE 18 B GLU 19 n 25 GLU 19 B ALA 20 n 26 ALA 20 B ALA 21 n 27 ALA 21 B ASP 22 n 28 ASP 22 B ALA 23 n 29 ALA 23 B MET 24 n 30 MET 24 B VAL 25 n 31 VAL 25 B ALA 26 n 32 ALA 26 B SER 27 n 33 SER 27 B ALA 28 n 34 ALA 28 B ASN 29 n 35 ASN 29 B VAL 30 n 36 VAL 30 B MET 31 n 37 MET 31 B LEU 32 n 38 LEU 32 B VAL 33 n 39 VAL 33 B GLY 34 n 40 GLY 34 B TYR 35 n 41 TYR 35 B GLU 36 n 42 GLU 36 B LYS 37 n 43 LYS 37 B ILE 38 n 44 ILE 38 B GLY 39 n 45 GLY 39 B LEU 40 n 46 LEU 40 B GLY 41 n 47 GLY 41 B LEU 42 n 48 LEU 42 B VAL 43 n 49 VAL 43 B THR 44 n 50 THR 44 B VAL 45 n 51 VAL 45 B ILE 46 n 52 ILE 46 B VAL 47 n 53 VAL 47 B ARG 48 n 54 ARG 48 B GLY 49 n 55 GLY 49 B ASP 50 n 56 ASP 50 B VAL 51 n 57 VAL 51 B GLY 52 n 58 GLY 52 B ALA 53 n 59 ALA 53 B VAL 54 n 60 VAL 54 B LYS 55 n 61 LYS 55 B ALA 56 n 62 ALA 56 B ALA 57 n 63 ALA 57 B THR 58 n 64 THR 58 B ASP 59 n 65 ASP 59 B ALA 60 n 66 ALA 60 B GLY 61 n 67 GLY 61 B ALA 62 n 68 ALA 62 B ALA 63 n 69 ALA 63 B ALA 64 n 70 ALA 64 B ALA 65 n 71 ALA 65 B ARG 66 n 72 ARG 66 B ASN 67 n 73 ASN 67 B VAL 68 n 74 VAL 68 B GLY 69 n 75 GLY 69 B GLU 70 n 76 GLU 70 B VAL 71 n 77 VAL 71 B LYS 72 n 78 LYS 72 B ALA 73 n 79 ALA 73 B VAL 74 n 80 VAL 74 B HIS 75 n 81 HIS 75 B VAL 76 n 82 VAL 76 B ILE 77 n 83 ILE 77 B PRO 78 n 84 PRO 78 B ARG 79 n 85 ARG 79 B PRO 80 n 86 PRO 80 B n 87 81 B n 88 82 B n 89 83 B n 90 84 B GLU 85 n 91 GLU 85 B LYS 86 n 92 LYS 86 B ILE 87 n 93 ILE 87 B LEU 88 n 94 LEU 88 B PRO 89 n 95 PRO 89 B n 96 90 B n 97 91 B n 98 92 B n 99 93 B n 100 94 B n 1 -5 C n 2 -4 C n 3 -3 C n 4 -2 C n 5 -1 C n 6 0 C n 7 1 C n 8 2 C n 9 3 C GLU 4 n 10 GLU 4 C ALA 5 n 11 ALA 5 C LEU 6 n 12 LEU 6 C GLY 7 n 13 GLY 7 C MET 8 n 14 MET 8 C VAL 9 n 15 VAL 9 C GLU 10 n 16 GLU 10 C THR 11 n 17 THR 11 C LYS 12 n 18 LYS 12 C GLY 13 n 19 GLY 13 C LEU 14 n 20 LEU 14 C THR 15 n 21 THR 15 C ALA 16 n 22 ALA 16 C ALA 17 n 23 ALA 17 C ILE 18 n 24 ILE 18 C GLU 19 n 25 GLU 19 C ALA 20 n 26 ALA 20 C ALA 21 n 27 ALA 21 C ASP 22 n 28 ASP 22 C ALA 23 n 29 ALA 23 C MET 24 n 30 MET 24 C VAL 25 n 31 VAL 25 C ALA 26 n 32 ALA 26 C SER 27 n 33 SER 27 C ALA 28 n 34 ALA 28 C ASN 29 n 35 ASN 29 C VAL 30 n 36 VAL 30 C MET 31 n 37 MET 31 C LEU 32 n 38 LEU 32 C VAL 33 n 39 VAL 33 C GLY 34 n 40 GLY 34 C TYR 35 n 41 TYR 35 C GLU 36 n 42 GLU 36 C LYS 37 n 43 LYS 37 C ILE 38 n 44 ILE 38 C GLY 39 n 45 GLY 39 C LEU 40 n 46 LEU 40 C GLY 41 n 47 GLY 41 C LEU 42 n 48 LEU 42 C VAL 43 n 49 VAL 43 C THR 44 n 50 THR 44 C VAL 45 n 51 VAL 45 C ILE 46 n 52 ILE 46 C VAL 47 n 53 VAL 47 C ARG 48 n 54 ARG 48 C GLY 49 n 55 GLY 49 C ASP 50 n 56 ASP 50 C VAL 51 n 57 VAL 51 C GLY 52 n 58 GLY 52 C ALA 53 n 59 ALA 53 C VAL 54 n 60 VAL 54 C LYS 55 n 61 LYS 55 C ALA 56 n 62 ALA 56 C ALA 57 n 63 ALA 57 C THR 58 n 64 THR 58 C ASP 59 n 65 ASP 59 C ALA 60 n 66 ALA 60 C GLY 61 n 67 GLY 61 C ALA 62 n 68 ALA 62 C ALA 63 n 69 ALA 63 C ALA 64 n 70 ALA 64 C ALA 65 n 71 ALA 65 C ARG 66 n 72 ARG 66 C ASN 67 n 73 ASN 67 C VAL 68 n 74 VAL 68 C GLY 69 n 75 GLY 69 C GLU 70 n 76 GLU 70 C VAL 71 n 77 VAL 71 C LYS 72 n 78 LYS 72 C ALA 73 n 79 ALA 73 C VAL 74 n 80 VAL 74 C HIS 75 n 81 HIS 75 C VAL 76 n 82 VAL 76 C ILE 77 n 83 ILE 77 C PRO 78 n 84 PRO 78 C ARG 79 n 85 ARG 79 C n 86 80 C n 87 81 C n 88 82 C n 89 83 C VAL 84 n 90 VAL 84 C GLU 85 n 91 GLU 85 C LYS 86 n 92 LYS 86 C ILE 87 n 93 ILE 87 C LEU 88 n 94 LEU 88 C PRO 89 n 95 PRO 89 C n 96 90 C n 97 91 C n 98 92 C n 99 93 C n 100 94 C 7.3289 -1.5698 1.0515 5.8640 -1.3952 0.9291 0.0034 0.0225 -0.9287 0.0488 0.1838 0.2953 0.0930 -0.0032 -0.1873 -0.5643 0.0185 0.0262 -0.5702 -0.0043 0.6079 refined 47.2937 14.6418 17.0829 X-RAY DIFFRACTION 6.9110 0.7559 0.0394 7.9966 -1.1276 0.1294 0.0968 0.0898 -0.0372 0.1734 0.0400 0.4591 -0.0166 0.0144 -0.1367 -0.5310 0.0058 0.0726 -0.5689 0.0028 0.6079 refined 36.9044 32.8559 17.2230 X-RAY DIFFRACTION 6.1721 0.9497 -0.0697 6.1183 0.3920 0.0000 0.0739 0.1862 0.2893 0.1280 -0.0854 -0.3395 0.0813 -0.0628 0.0116 -0.3734 0.0378 0.0410 -0.3809 0.0202 0.5822 refined 19.1558 9.6230 15.1227 X-RAY DIFFRACTION A 2 A 90 X-RAY DIFFRACTION 1 { A|* } B 4 B 89 X-RAY DIFFRACTION 2 { B|* } C 4 C 89 X-RAY DIFFRACTION 3 { C|* } author_and_software_defined_assembly PISA 6 hexameric author_and_software_defined_assembly PISA 6 hexameric 9250 -112 19500 8980 -79 18800 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_655 -y+1,x-y,z crystal symmetry operation 116.8200000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_665 -x+y+1,-x+1,z crystal symmetry operation 58.4100000000 101.1690876701 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -y,x-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -x+y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 5_555 y,-x+y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 -0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 6_555 x-y,x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N MET 31 A N MET 37 A O ARG 48 A O ARG 54 A O VAL 43 A O VAL 49 A N THR 11 A N THR 17 A N GLU 4 A N GLU 10 A O ARG 79 A O ARG 85 B N MET 31 B N MET 37 B O ARG 48 B O ARG 54 B O VAL 43 B O VAL 49 B N THR 11 B N THR 17 B N LEU 6 B N LEU 12 B O ILE 77 B O ILE 83 C N MET 31 C N MET 37 C O ARG 48 C O ARG 54 C O VAL 43 C O VAL 49 C N THR 11 C N THR 17 C N LEU 6 C N LEU 12 C O ILE 77 C O ILE 83 1 A CG GLN 2 A CG GLN 8 1 Y 1 A CD GLN 2 A CD GLN 8 1 Y 1 A OE1 GLN 2 A OE1 GLN 8 1 Y 1 A NE2 GLN 2 A NE2 GLN 8 1 Y 1 A CG HIS 81 A CG HIS 87 1 Y 1 A ND1 HIS 81 A ND1 HIS 87 1 Y 1 A CD2 HIS 81 A CD2 HIS 87 1 Y 1 A CE1 HIS 81 A CE1 HIS 87 1 Y 1 A NE2 HIS 81 A NE2 HIS 87 1 Y 1 A CG LYS 86 A CG LYS 92 1 Y 1 A CD LYS 86 A CD LYS 92 1 Y 1 A CE LYS 86 A CE LYS 92 1 Y 1 A NZ LYS 86 A NZ LYS 92 1 Y 1 A CG LYS 90 A CG LYS 96 1 Y 1 A CD LYS 90 A CD LYS 96 1 Y 1 A CE LYS 90 A CE LYS 96 1 Y 1 A NZ LYS 90 A NZ LYS 96 1 Y 1 B CG GLU 4 B CG GLU 10 1 Y 1 B CD GLU 4 B CD GLU 10 1 Y 1 B OE1 GLU 4 B OE1 GLU 10 1 Y 1 B OE2 GLU 4 B OE2 GLU 10 1 Y 1 B CG GLU 85 B CG GLU 91 1 Y 1 B CD GLU 85 B CD GLU 91 1 Y 1 B OE1 GLU 85 B OE1 GLU 91 1 Y 1 B OE2 GLU 85 B OE2 GLU 91 1 Y 1 B CG LYS 86 B CG LYS 92 1 Y 1 B CD LYS 86 B CD LYS 92 1 Y 1 B CE LYS 86 B CE LYS 92 1 Y 1 B NZ LYS 86 B NZ LYS 92 1 Y 1 C CG ASN 29 C CG ASN 35 1 Y 1 C OD1 ASN 29 C OD1 ASN 35 1 Y 1 C ND2 ASN 29 C ND2 ASN 35 1 Y 1 C CG GLU 85 C CG GLU 91 1 Y 1 C CD GLU 85 C CD GLU 91 1 Y 1 C OE1 GLU 85 C OE1 GLU 91 1 Y 1 C OE2 GLU 85 C OE2 GLU 91 1 Y 1 C CG LYS 86 C CG LYS 92 1 Y 1 C CD LYS 86 C CD LYS 92 1 Y 1 C CE LYS 86 C CE LYS 92 1 Y 1 C NZ LYS 86 C NZ LYS 92 1 Y 1 A MET -5 A MET 1 1 Y 1 A HIS -4 A HIS 2 1 Y 1 A HIS -3 A HIS 3 1 Y 1 A HIS -2 A HIS 4 1 Y 1 A HIS -1 A HIS 5 1 Y 1 A HIS 0 A HIS 6 1 Y 1 A HIS 1 A HIS 7 1 Y 1 A GLY 91 A GLY 97 1 Y 1 A ILE 92 A ILE 98 1 Y 1 A SER 93 A SER 99 1 Y 1 A GLN 94 A GLN 100 1 Y 1 B MET -5 B MET 1 1 Y 1 B HIS -4 B HIS 2 1 Y 1 B HIS -3 B HIS 3 1 Y 1 B HIS -2 B HIS 4 1 Y 1 B HIS -1 B HIS 5 1 Y 1 B HIS 0 B HIS 6 1 Y 1 B HIS 1 B HIS 7 1 Y 1 B GLN 2 B GLN 8 1 Y 1 B GLN 3 B GLN 9 1 Y 1 B HIS 81 B HIS 87 1 Y 1 B THR 82 B THR 88 1 Y 1 B ASP 83 B ASP 89 1 Y 1 B VAL 84 B VAL 90 1 Y 1 B LYS 90 B LYS 96 1 Y 1 B GLY 91 B GLY 97 1 Y 1 B ILE 92 B ILE 98 1 Y 1 B SER 93 B SER 99 1 Y 1 B GLN 94 B GLN 100 1 Y 1 C MET -5 C MET 1 1 Y 1 C HIS -4 C HIS 2 1 Y 1 C HIS -3 C HIS 3 1 Y 1 C HIS -2 C HIS 4 1 Y 1 C HIS -1 C HIS 5 1 Y 1 C HIS 0 C HIS 6 1 Y 1 C HIS 1 C HIS 7 1 Y 1 C GLN 2 C GLN 8 1 Y 1 C GLN 3 C GLN 9 1 Y 1 C PRO 80 C PRO 86 1 Y 1 C HIS 81 C HIS 87 1 Y 1 C THR 82 C THR 88 1 Y 1 C ASP 83 C ASP 89 1 Y 1 C LYS 90 C LYS 96 1 Y 1 C GLY 91 C GLY 97 1 Y 1 C ILE 92 C ILE 98 1 Y 1 C SER 93 C SER 99 1 Y 1 C GLN 94 C GLN 100 1 Y 1 A GLN 3 -136.41 -57.67 1 A HIS 81 91.33 -12.50 164.730 80.2600 39.420 6.2816 0.0000 0.0000 6.2816 0.0000 -12.5631 0.9444 0.9288 0.2679 0.2289 0.2328 0.2328 2.3000 54.134 1178 11771 11771 10.0100 98.5800 0.3190 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 3NGK Engh & Huber 0.624 2.3000 54.134 4 1747 5 0 1738 608 SINUSOIDAL 2.000 31 HARMONIC 2.000 263 HARMONIC 5.000 1751 HARMONIC 20.000 254 SEMIHARMONIC 5.000 1945 SEMIHARMONIC 4.000 0.010 1751 HARMONIC 2.000 1.280 2380 HARMONIC 2.000 2.740 20.480 0.3006 0.2356 0.2420 2.5200 270 2425 2695 6 10.0200 98.5800 50.920 2.300 54.134 4RBT 11772 11772 -3.000 0.102 0.983 1 15.560 98.600 0.014 2.300 2.360 1.080 4542 801 1 94.200 0.014 2.360 2.420 1.540 5977 831 1 98.700 0.014 2.420 2.500 2.320 7033 814 1 99.600 0.014 2.500 2.570 3.050 8310 789 1 99.700 0.014 2.570 2.660 3.950 10601 775 1 99.900 0.014 2.660 2.750 5.700 12065 736 1 99.500 0.014 2.750 2.850 7.050 11934 723 1 99.400 0.014 2.850 2.970 8.040 11145 690 1 99.300 0.014 2.970 3.100 10.600 10055 666 1 99.100 0.014 3.100 3.250 13.380 10594 640 1 99.400 0.014 3.250 3.430 17.810 10008 611 1 99.300 0.014 3.430 3.640 22.990 9140 571 1 99.000 0.014 3.640 3.890 26.680 8240 552 1 99.100 0.014 3.890 4.200 32.210 8504 512 1 99.000 0.014 4.200 4.600 39.720 7676 475 1 97.500 0.014 4.600 5.140 42.540 6503 430 1 98.900 0.014 5.140 5.940 39.820 6317 389 1 97.700 0.014 5.940 7.270 40.660 4962 332 1 97.400 0.014 7.270 10.290 52.210 3989 269 1 97.100 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Mon Feb 10 17:06:44 2014 http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.5.6 refinement Gerard Bricogne buster-develop@GlobalPhasing.com http://www.globalphasing.com/buster/ BUSTER-TNT program data extraction PDB deposit@deposit.rcsb.org July. 29, 2014 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.15 refinement BUSTER 2.10.0 PduA K26A S40L mutant, from Salmonella enterica serovar Typhimurium LT2 1 N N 1 N N 1 N N 2 N N 3 N N 3 N N A GLY 13 A GLY 19 HELX_P A ALA 28 A ALA 34 1 1 16 A VAL 51 A VAL 57 HELX_P A ARG 66 A ARG 72 1 2 16 B GLY 13 B GLY 19 HELX_P B ALA 28 B ALA 34 1 3 16 B ASP 50 B ASP 56 HELX_P B ARG 66 B ARG 72 1 4 17 C GLY 13 C GLY 19 HELX_P C ALA 26 C ALA 32 1 5 14 C ASP 50 C ASP 56 HELX_P C ARG 66 C ARG 72 1 6 17 STRUCTURAL PROTEIN Bacterial Microcompartment shell protein, STRUCTURAL PROTEIN PDUA_SALTY UNP 1 2 P0A1C7 QQEALGMVETKGLTAAIEAADAMVKSANVMLVGYEKIGSGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPH TDVEKILPKGISQ 2 94 4RBT 2 94 P0A1C7 A 1 8 100 2 94 4RBT 2 94 P0A1C7 B 1 8 100 2 94 4RBT 2 94 P0A1C7 C 1 8 100 1 expression tag MET -5 4RBT A P0A1C7 UNP 1 1 expression tag HIS -4 4RBT A P0A1C7 UNP 2 1 expression tag HIS -3 4RBT A P0A1C7 UNP 3 1 expression tag HIS -2 4RBT A P0A1C7 UNP 4 1 expression tag HIS -1 4RBT A P0A1C7 UNP 5 1 expression tag HIS 0 4RBT A P0A1C7 UNP 6 1 expression tag HIS 1 4RBT A P0A1C7 UNP 7 1 LYS engineered mutation ALA 26 4RBT A P0A1C7 UNP 26 32 1 SER engineered mutation LEU 40 4RBT A P0A1C7 UNP 40 46 2 expression tag MET -5 4RBT B P0A1C7 UNP 1 2 expression tag HIS -4 4RBT B P0A1C7 UNP 2 2 expression tag HIS -3 4RBT B P0A1C7 UNP 3 2 expression tag HIS -2 4RBT B P0A1C7 UNP 4 2 expression tag HIS -1 4RBT B P0A1C7 UNP 5 2 expression tag HIS 0 4RBT B P0A1C7 UNP 6 2 expression tag HIS 1 4RBT B P0A1C7 UNP 7 2 LYS engineered mutation ALA 26 4RBT B P0A1C7 UNP 26 32 2 SER engineered mutation LEU 40 4RBT B P0A1C7 UNP 40 46 3 expression tag MET -5 4RBT C P0A1C7 UNP 1 3 expression tag HIS -4 4RBT C P0A1C7 UNP 2 3 expression tag HIS -3 4RBT C P0A1C7 UNP 3 3 expression tag HIS -2 4RBT C P0A1C7 UNP 4 3 expression tag HIS -1 4RBT C P0A1C7 UNP 5 3 expression tag HIS 0 4RBT C P0A1C7 UNP 6 3 expression tag HIS 1 4RBT C P0A1C7 UNP 7 3 LYS engineered mutation ALA 26 4RBT C P0A1C7 UNP 26 32 3 SER engineered mutation LEU 40 4RBT C P0A1C7 UNP 40 46 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A MET 31 A MET 37 A GLY 39 A GLY 45 A LEU 42 A LEU 48 A ASP 50 A ASP 56 A GLU 4 A GLU 10 A LYS 12 A LYS 18 A GLU 70 A GLU 76 A ARG 79 A ARG 85 B MET 31 B MET 37 B GLY 39 B GLY 45 B LEU 42 B LEU 48 B GLY 49 B GLY 55 B ALA 5 B ALA 11 B LYS 12 B LYS 18 B GLU 70 B GLU 76 B ILE 77 B ILE 83 C VAL 30 C VAL 36 C GLY 39 C GLY 45 C LEU 42 C LEU 48 C GLY 49 C GLY 55 C ALA 5 C ALA 11 C LYS 12 C LYS 18 C GLU 70 C GLU 76 C PRO 78 C PRO 84 BINDING SITE FOR RESIDUE SO4 A 101 A SO4 101 Software 5 A ARG 48 A ARG 54 5 1_555 A THR 82 A THR 88 5 1_555 A ASP 83 A ASP 89 5 1_555 A VAL 84 A VAL 90 5 1_555 A GLU 85 A GLU 91 5 1_555 177 P 6 2 2