0.012990
0.000000
0.002806
0.000000
0.016613
0.000000
0.000000
0.000000
0.012226
0.00000
0.00000
0.00000
Kim, H.M.
Park, B.S.
Kim, D.
Lee, S.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
102.19
90.00
76.981
60.195
83.679
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
R
C
N
251
R
C
N
252
R
C
N
253
S
C
N
254
R
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
N
N
259
N
O
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
S
N
335
N
O
N
336
N
O
N
337
N
O
N
338
N
O
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
R
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
N
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
N
412
N
C
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
Y
278
N
doub
Y
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
doub
Y
356
N
sing
Y
357
N
sing
N
358
N
sing
Y
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
UK
Nat Commun
2041-1723
5
5423
5423
10.1038/ncomms6423
25394468
Structural basis for LAR-RPTP/Slitrk complex-mediated synaptic adhesion.
2014
10.2210/pdb4rca/pdb
pdb_00004rca
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2013-04-11
ADSC QUANTUM 270
SINGLE WAVELENGTH
M
x-ray
1
0.97934
1.0
7A (6B, 6C1)
PAL/PLS
0.97934
SYNCHROTRON
PAL/PLS BEAMLINE 7A (6B, 6C1)
33853.375
Receptor-type tyrosine-protein phosphatase delta
3.1.3.48
1
man
polymer
28664.777
SLIT and NTRK-like protein 1
1
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
3
man
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
2
nat
water
Protein-tyrosine phosphatase delta, R-PTP-delta
Leucine-rich repeat-containing protein 12
no
no
ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA
SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS
ESIGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRELREVRRVPPRFSIPPTNHEIMPGGSVNITCVAV
GSPMPYVKWMLGAEDLTPEDDMPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKALSRLVPR
ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA
SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS
ESIGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRELREVRRVPPRFSIPPTNHEIMPGGSVNITCVAV
GSPMPYVKWMLGAEDLTPEDDMPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKALSRLVPR
A
polypeptide(L)
no
no
TGDVCKEKICSCNEIEGDLHVDCEKKGFTSLQRFTAPTSQFYHLFLHGNSLTRLFPNEFANFYNAVSLHMENNGLHEIVP
GAFLGLQLVKRLHINNNKIKSFRKQTFLGLDDLEYLQADFNLLRDIDPGAFQDLNKLEVLILNDNLISTLPANVFQYVPI
THLDLRGNRLKTLPYEEVLEQIPGIAEILLEDNPWDCTCDLLSLKEWLENIPKNALIGRVVCEAPTRLQGKDLNETTEQD
LCPLKSRLVPR
TGDVCKEKICSCNEIEGDLHVDCEKKGFTSLQRFTAPTSQFYHLFLHGNSLTRLFPNEFANFYNAVSLHMENNGLHEIVP
GAFLGLQLVKRLHINNNKIKSFRKQTFLGLDDLEYLQADFNLLRDIDPGAFQDLNKLEVLILNDNLISTLPANVFQYVPI
THLDLRGNRLKTLPYEEVLEQIPGIAEILLEDNPWDCTCDLLSLKEWLENIPKNALIGRVVCEAPTRLQGKDLNETTEQD
LCPLKSRLVPR
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PTPRD
9606
Homo sapiens
7108
Spodoptera frugiperda
human
sample
SLITRK1, KIAA1910, LRRC12, UNQ233/PRO266
9606
Homo sapiens
7108
Spodoptera frugiperda
1
3.03
59.42
VAPOR DIFFUSION, HANGING DROP
8.5
100 mM Tris-Cl, pH 8.5, 200 mM ammonium sulfate, and 20% PEG3350 (v/v), VAPOR DIFFUSION, HANGING DROP, temperature 296.0K
296.0
software
struct_conn
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Data collection
Derived calculations
Refinement description
Data collection
Database references
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2014-11-19
1
1
2014-11-26
1
2
2019-07-17
1
3
2020-07-29
1
4
2023-09-20
_software.classification
_software.name
_software.version
_struct_conn.pdbx_leaving_atom_flag
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
RCSB
2014-09-15
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
SO4
SULFATE ION
HOH
water
4RCW
4RCW, 2YD6
PDB
experimental model
2YD6
4RCW, 2YD6
PDB
experimental model
NAG
401
3
NAG
NAG
401
A
NAG
402
3
NAG
NAG
402
A
SO4
301
4
SO4
SO4
301
B
NAG
302
3
NAG
NAG
302
B
HOH
401
5
HOH
HOH
401
B
HOH
402
5
HOH
HOH
402
B
GLU
21
n
1
GLU
21
A
THR
22
n
2
THR
22
A
PRO
23
n
3
PRO
23
A
PRO
24
n
4
PRO
24
A
ARG
25
n
5
ARG
25
A
PHE
26
n
6
PHE
26
A
THR
27
n
7
THR
27
A
ARG
28
n
8
ARG
28
A
THR
29
n
9
THR
29
A
PRO
30
n
10
PRO
30
A
VAL
31
n
11
VAL
31
A
ASP
32
n
12
ASP
32
A
GLN
33
n
13
GLN
33
A
THR
34
n
14
THR
34
A
GLY
35
n
15
GLY
35
A
VAL
36
n
16
VAL
36
A
SER
37
n
17
SER
37
A
GLY
38
n
18
GLY
38
A
GLY
39
n
19
GLY
39
A
VAL
40
n
20
VAL
40
A
ALA
41
n
21
ALA
41
A
SER
42
n
22
SER
42
A
PHE
43
n
23
PHE
43
A
ILE
44
n
24
ILE
44
A
CYS
45
n
25
CYS
45
A
GLN
46
n
26
GLN
46
A
ALA
47
n
27
ALA
47
A
THR
48
n
28
THR
48
A
GLY
49
n
29
GLY
49
A
ASP
50
n
30
ASP
50
A
PRO
51
n
31
PRO
51
A
ARG
52
n
32
ARG
52
A
PRO
53
n
33
PRO
53
A
LYS
54
n
34
LYS
54
A
ILE
55
n
35
ILE
55
A
VAL
56
n
36
VAL
56
A
TRP
57
n
37
TRP
57
A
ASN
58
n
38
ASN
58
A
LYS
59
n
39
LYS
59
A
LYS
60
n
40
LYS
60
A
GLY
61
n
41
GLY
61
A
LYS
62
n
42
LYS
62
A
LYS
63
n
43
LYS
63
A
VAL
64
n
44
VAL
64
A
SER
65
n
45
SER
65
A
ASN
66
n
46
ASN
66
A
GLN
67
n
47
GLN
67
A
ARG
68
n
48
ARG
68
A
PHE
69
n
49
PHE
69
A
GLU
70
n
50
GLU
70
A
VAL
71
n
51
VAL
71
A
ILE
72
n
52
ILE
72
A
GLU
73
n
53
GLU
73
A
PHE
74
n
54
PHE
74
A
ASP
75
n
55
ASP
75
A
ASP
76
n
56
ASP
76
A
GLY
77
n
57
GLY
77
A
SER
78
n
58
SER
78
A
GLY
79
n
59
GLY
79
A
SER
80
n
60
SER
80
A
VAL
81
n
61
VAL
81
A
LEU
82
n
62
LEU
82
A
ARG
83
n
63
ARG
83
A
ILE
84
n
64
ILE
84
A
GLN
85
n
65
GLN
85
A
PRO
86
n
66
PRO
86
A
LEU
87
n
67
LEU
87
A
ARG
88
n
68
ARG
88
A
THR
89
n
69
THR
89
A
PRO
90
n
70
PRO
90
A
ARG
91
n
71
ARG
91
A
ASP
92
n
72
ASP
92
A
GLU
93
n
73
GLU
93
A
ALA
94
n
74
ALA
94
A
ILE
95
n
75
ILE
95
A
TYR
96
n
76
TYR
96
A
GLU
97
n
77
GLU
97
A
CYS
98
n
78
CYS
98
A
VAL
99
n
79
VAL
99
A
ALA
100
n
80
ALA
100
A
SER
101
n
81
SER
101
A
ASN
102
n
82
ASN
102
A
ASN
103
n
83
ASN
103
A
VAL
104
n
84
VAL
104
A
GLY
105
n
85
GLY
105
A
GLU
106
n
86
GLU
106
A
ILE
107
n
87
ILE
107
A
SER
108
n
88
SER
108
A
VAL
109
n
89
VAL
109
A
SER
110
n
90
SER
110
A
THR
111
n
91
THR
111
A
ARG
112
n
92
ARG
112
A
LEU
113
n
93
LEU
113
A
THR
114
n
94
THR
114
A
VAL
115
n
95
VAL
115
A
LEU
116
n
96
LEU
116
A
ARG
117
n
97
ARG
117
A
GLU
118
n
98
GLU
118
A
ASP
119
n
99
ASP
119
A
GLN
120
n
100
GLN
120
A
ILE
121
n
101
ILE
121
A
PRO
122
n
102
PRO
122
A
ARG
123
n
103
ARG
123
A
GLY
124
n
104
GLY
124
A
PHE
125
n
105
PHE
125
A
PRO
126
n
106
PRO
126
A
THR
127
n
107
THR
127
A
ILE
128
n
108
ILE
128
A
ASP
129
n
109
ASP
129
A
MET
130
n
110
MET
130
A
GLY
131
n
111
GLY
131
A
PRO
132
n
112
PRO
132
A
GLN
133
n
113
GLN
133
A
LEU
134
n
114
LEU
134
A
LYS
135
n
115
LYS
135
A
VAL
136
n
116
VAL
136
A
VAL
137
n
117
VAL
137
A
GLU
138
n
118
GLU
138
A
ARG
139
n
119
ARG
139
A
THR
140
n
120
THR
140
A
ARG
141
n
121
ARG
141
A
THR
142
n
122
THR
142
A
ALA
143
n
123
ALA
143
A
THR
144
n
124
THR
144
A
MET
145
n
125
MET
145
A
LEU
146
n
126
LEU
146
A
CYS
147
n
127
CYS
147
A
ALA
148
n
128
ALA
148
A
ALA
149
n
129
ALA
149
A
SER
150
n
130
SER
150
A
GLY
151
n
131
GLY
151
A
ASN
152
n
132
ASN
152
A
PRO
153
n
133
PRO
153
A
ASP
154
n
134
ASP
154
A
PRO
155
n
135
PRO
155
A
GLU
156
n
136
GLU
156
A
ILE
157
n
137
ILE
157
A
THR
158
n
138
THR
158
A
TRP
159
n
139
TRP
159
A
PHE
160
n
140
PHE
160
A
LYS
161
n
141
LYS
161
A
ASP
162
n
142
ASP
162
A
PHE
163
n
143
PHE
163
A
LEU
164
n
144
LEU
164
A
PRO
165
n
145
PRO
165
A
VAL
166
n
146
VAL
166
A
ASP
167
n
147
ASP
167
A
THR
168
n
148
THR
168
A
SER
169
n
149
SER
169
A
ASN
170
n
150
ASN
170
A
ASN
171
n
151
ASN
171
A
ASN
172
n
152
ASN
172
A
GLY
173
n
153
GLY
173
A
ARG
174
n
154
ARG
174
A
ILE
175
n
155
ILE
175
A
LYS
176
n
156
LYS
176
A
GLN
177
n
157
GLN
177
A
LEU
178
n
158
LEU
178
A
ARG
179
n
159
ARG
179
A
SER
180
n
160
SER
180
A
GLU
181
n
161
GLU
181
A
SER
182
n
162
SER
182
A
ILE
183
n
163
ILE
183
A
GLY
184
n
164
GLY
184
A
GLY
185
n
165
GLY
185
A
THR
186
n
166
THR
186
A
PRO
187
n
167
PRO
187
A
ILE
188
n
168
ILE
188
A
ARG
189
n
169
ARG
189
A
GLY
190
n
170
GLY
190
A
ALA
191
n
171
ALA
191
A
LEU
192
n
172
LEU
192
A
GLN
193
n
173
GLN
193
A
ILE
194
n
174
ILE
194
A
GLU
195
n
175
GLU
195
A
GLN
196
n
176
GLN
196
A
SER
197
n
177
SER
197
A
GLU
198
n
178
GLU
198
A
GLU
199
n
179
GLU
199
A
SER
200
n
180
SER
200
A
ASP
201
n
181
ASP
201
A
GLN
202
n
182
GLN
202
A
GLY
203
n
183
GLY
203
A
LYS
204
n
184
LYS
204
A
TYR
205
n
185
TYR
205
A
GLU
206
n
186
GLU
206
A
CYS
207
n
187
CYS
207
A
VAL
208
n
188
VAL
208
A
ALA
209
n
189
ALA
209
A
THR
210
n
190
THR
210
A
ASN
211
n
191
ASN
211
A
SER
212
n
192
SER
212
A
ALA
213
n
193
ALA
213
A
GLY
214
n
194
GLY
214
A
THR
215
n
195
THR
215
A
ARG
216
n
196
ARG
216
A
TYR
217
n
197
TYR
217
A
SER
218
n
198
SER
218
A
ALA
219
n
199
ALA
219
A
PRO
220
n
200
PRO
220
A
ALA
221
n
201
ALA
221
A
ASN
222
n
202
ASN
222
A
LEU
223
n
203
LEU
223
A
TYR
224
n
204
TYR
224
A
VAL
225
n
205
VAL
225
A
ARG
226
n
206
ARG
226
A
GLU
227
n
207
GLU
227
A
LEU
228
n
208
LEU
228
A
ARG
229
n
209
ARG
229
A
GLU
230
n
210
GLU
230
A
VAL
231
n
211
VAL
231
A
ARG
232
n
212
ARG
232
A
ARG
233
n
213
ARG
233
A
VAL
234
n
214
VAL
234
A
PRO
235
n
215
PRO
235
A
PRO
236
n
216
PRO
236
A
ARG
237
n
217
ARG
237
A
PHE
238
n
218
PHE
238
A
SER
239
n
219
SER
239
A
ILE
240
n
220
ILE
240
A
PRO
241
n
221
PRO
241
A
PRO
242
n
222
PRO
242
A
THR
243
n
223
THR
243
A
ASN
244
n
224
ASN
244
A
HIS
245
n
225
HIS
245
A
GLU
246
n
226
GLU
246
A
ILE
247
n
227
ILE
247
A
MET
248
n
228
MET
248
A
PRO
249
n
229
PRO
249
A
GLY
250
n
230
GLY
250
A
GLY
251
n
231
GLY
251
A
SER
252
n
232
SER
252
A
VAL
253
n
233
VAL
253
A
ASN
254
n
234
ASN
254
A
ILE
255
n
235
ILE
255
A
THR
256
n
236
THR
256
A
CYS
257
n
237
CYS
257
A
VAL
258
n
238
VAL
258
A
ALA
259
n
239
ALA
259
A
VAL
260
n
240
VAL
260
A
GLY
261
n
241
GLY
261
A
SER
262
n
242
SER
262
A
PRO
263
n
243
PRO
263
A
MET
264
n
244
MET
264
A
PRO
265
n
245
PRO
265
A
TYR
266
n
246
TYR
266
A
VAL
267
n
247
VAL
267
A
LYS
268
n
248
LYS
268
A
TRP
269
n
249
TRP
269
A
MET
270
n
250
MET
270
A
LEU
271
n
251
LEU
271
A
GLY
272
n
252
GLY
272
A
ALA
273
n
253
ALA
273
A
GLU
274
n
254
GLU
274
A
ASP
275
n
255
ASP
275
A
LEU
276
n
256
LEU
276
A
THR
277
n
257
THR
277
A
PRO
278
n
258
PRO
278
A
GLU
279
n
259
GLU
279
A
ASP
280
n
260
ASP
280
A
ASP
281
n
261
ASP
281
A
MET
282
n
262
MET
282
A
PRO
283
n
263
PRO
283
A
ILE
284
n
264
ILE
284
A
GLY
285
n
265
GLY
285
A
ARG
286
n
266
ARG
286
A
ASN
287
n
267
ASN
287
A
VAL
288
n
268
VAL
288
A
LEU
289
n
269
LEU
289
A
GLU
290
n
270
GLU
290
A
LEU
291
n
271
LEU
291
A
ASN
292
n
272
ASN
292
A
ASP
293
n
273
ASP
293
A
VAL
294
n
274
VAL
294
A
ARG
295
n
275
ARG
295
A
GLN
296
n
276
GLN
296
A
SER
297
n
277
SER
297
A
ALA
298
n
278
ALA
298
A
ASN
299
n
279
ASN
299
A
TYR
300
n
280
TYR
300
A
THR
301
n
281
THR
301
A
CYS
302
n
282
CYS
302
A
VAL
303
n
283
VAL
303
A
ALA
304
n
284
ALA
304
A
MET
305
n
285
MET
305
A
SER
306
n
286
SER
306
A
THR
307
n
287
THR
307
A
LEU
308
n
288
LEU
308
A
GLY
309
n
289
GLY
309
A
VAL
310
n
290
VAL
310
A
ILE
311
n
291
ILE
311
A
GLU
312
n
292
GLU
312
A
ALA
313
n
293
ALA
313
A
ILE
314
n
294
ILE
314
A
ALA
315
n
295
ALA
315
A
GLN
316
n
296
GLN
316
A
ILE
317
n
297
ILE
317
A
THR
318
n
298
THR
318
A
VAL
319
n
299
VAL
319
A
LYS
320
n
300
LYS
320
A
n
301
321
A
n
302
322
A
n
303
323
A
n
304
324
A
n
305
325
A
n
306
326
A
n
307
327
A
n
308
328
A
n
1
20
B
n
2
21
B
ASP
22
n
3
ASP
22
B
VAL
23
n
4
VAL
23
B
CYS
24
n
5
CYS
24
B
LYS
25
n
6
LYS
25
B
GLU
26
n
7
GLU
26
B
LYS
27
n
8
LYS
27
B
ILE
28
n
9
ILE
28
B
CYS
29
n
10
CYS
29
B
SER
30
n
11
SER
30
B
CYS
31
n
12
CYS
31
B
ASN
32
n
13
ASN
32
B
GLU
33
n
14
GLU
33
B
ILE
34
n
15
ILE
34
B
GLU
35
n
16
GLU
35
B
GLY
36
n
17
GLY
36
B
ASP
37
n
18
ASP
37
B
LEU
38
n
19
LEU
38
B
HIS
39
n
20
HIS
39
B
VAL
40
n
21
VAL
40
B
ASP
41
n
22
ASP
41
B
CYS
42
n
23
CYS
42
B
GLU
43
n
24
GLU
43
B
LYS
44
n
25
LYS
44
B
LYS
45
n
26
LYS
45
B
GLY
46
n
27
GLY
46
B
PHE
47
n
28
PHE
47
B
THR
48
n
29
THR
48
B
SER
49
n
30
SER
49
B
LEU
50
n
31
LEU
50
B
GLN
51
n
32
GLN
51
B
ARG
52
n
33
ARG
52
B
PHE
53
n
34
PHE
53
B
THR
54
n
35
THR
54
B
ALA
55
n
36
ALA
55
B
PRO
56
n
37
PRO
56
B
THR
57
n
38
THR
57
B
SER
58
n
39
SER
58
B
GLN
59
n
40
GLN
59
B
PHE
60
n
41
PHE
60
B
TYR
61
n
42
TYR
61
B
HIS
62
n
43
HIS
62
B
LEU
63
n
44
LEU
63
B
PHE
64
n
45
PHE
64
B
LEU
65
n
46
LEU
65
B
HIS
66
n
47
HIS
66
B
GLY
67
n
48
GLY
67
B
ASN
68
n
49
ASN
68
B
SER
69
n
50
SER
69
B
LEU
70
n
51
LEU
70
B
THR
71
n
52
THR
71
B
ARG
72
n
53
ARG
72
B
LEU
73
n
54
LEU
73
B
PHE
74
n
55
PHE
74
B
PRO
75
n
56
PRO
75
B
ASN
76
n
57
ASN
76
B
GLU
77
n
58
GLU
77
B
PHE
78
n
59
PHE
78
B
ALA
79
n
60
ALA
79
B
ASN
80
n
61
ASN
80
B
PHE
81
n
62
PHE
81
B
TYR
82
n
63
TYR
82
B
ASN
83
n
64
ASN
83
B
ALA
84
n
65
ALA
84
B
VAL
85
n
66
VAL
85
B
SER
86
n
67
SER
86
B
LEU
87
n
68
LEU
87
B
HIS
88
n
69
HIS
88
B
MET
89
n
70
MET
89
B
GLU
90
n
71
GLU
90
B
ASN
91
n
72
ASN
91
B
ASN
92
n
73
ASN
92
B
GLY
93
n
74
GLY
93
B
LEU
94
n
75
LEU
94
B
HIS
95
n
76
HIS
95
B
GLU
96
n
77
GLU
96
B
ILE
97
n
78
ILE
97
B
VAL
98
n
79
VAL
98
B
PRO
99
n
80
PRO
99
B
GLY
100
n
81
GLY
100
B
ALA
101
n
82
ALA
101
B
PHE
102
n
83
PHE
102
B
LEU
103
n
84
LEU
103
B
GLY
104
n
85
GLY
104
B
LEU
105
n
86
LEU
105
B
GLN
106
n
87
GLN
106
B
LEU
107
n
88
LEU
107
B
VAL
108
n
89
VAL
108
B
LYS
109
n
90
LYS
109
B
ARG
110
n
91
ARG
110
B
LEU
111
n
92
LEU
111
B
HIS
112
n
93
HIS
112
B
ILE
113
n
94
ILE
113
B
ASN
114
n
95
ASN
114
B
ASN
115
n
96
ASN
115
B
ASN
116
n
97
ASN
116
B
LYS
117
n
98
LYS
117
B
ILE
118
n
99
ILE
118
B
LYS
119
n
100
LYS
119
B
SER
120
n
101
SER
120
B
PHE
121
n
102
PHE
121
B
ARG
122
n
103
ARG
122
B
LYS
123
n
104
LYS
123
B
GLN
124
n
105
GLN
124
B
THR
125
n
106
THR
125
B
PHE
126
n
107
PHE
126
B
LEU
127
n
108
LEU
127
B
GLY
128
n
109
GLY
128
B
LEU
129
n
110
LEU
129
B
ASP
130
n
111
ASP
130
B
ASP
131
n
112
ASP
131
B
LEU
132
n
113
LEU
132
B
GLU
133
n
114
GLU
133
B
TYR
134
n
115
TYR
134
B
LEU
135
n
116
LEU
135
B
GLN
136
n
117
GLN
136
B
ALA
137
n
118
ALA
137
B
ASP
138
n
119
ASP
138
B
PHE
139
n
120
PHE
139
B
ASN
140
n
121
ASN
140
B
LEU
141
n
122
LEU
141
B
LEU
142
n
123
LEU
142
B
ARG
143
n
124
ARG
143
B
ASP
144
n
125
ASP
144
B
ILE
145
n
126
ILE
145
B
ASP
146
n
127
ASP
146
B
PRO
147
n
128
PRO
147
B
GLY
148
n
129
GLY
148
B
ALA
149
n
130
ALA
149
B
PHE
150
n
131
PHE
150
B
GLN
151
n
132
GLN
151
B
ASP
152
n
133
ASP
152
B
LEU
153
n
134
LEU
153
B
ASN
154
n
135
ASN
154
B
LYS
155
n
136
LYS
155
B
LEU
156
n
137
LEU
156
B
GLU
157
n
138
GLU
157
B
VAL
158
n
139
VAL
158
B
LEU
159
n
140
LEU
159
B
ILE
160
n
141
ILE
160
B
LEU
161
n
142
LEU
161
B
ASN
162
n
143
ASN
162
B
ASP
163
n
144
ASP
163
B
ASN
164
n
145
ASN
164
B
LEU
165
n
146
LEU
165
B
ILE
166
n
147
ILE
166
B
SER
167
n
148
SER
167
B
THR
168
n
149
THR
168
B
LEU
169
n
150
LEU
169
B
PRO
170
n
151
PRO
170
B
ALA
171
n
152
ALA
171
B
ASN
172
n
153
ASN
172
B
VAL
173
n
154
VAL
173
B
PHE
174
n
155
PHE
174
B
GLN
175
n
156
GLN
175
B
TYR
176
n
157
TYR
176
B
VAL
177
n
158
VAL
177
B
PRO
178
n
159
PRO
178
B
ILE
179
n
160
ILE
179
B
THR
180
n
161
THR
180
B
HIS
181
n
162
HIS
181
B
LEU
182
n
163
LEU
182
B
ASP
183
n
164
ASP
183
B
LEU
184
n
165
LEU
184
B
ARG
185
n
166
ARG
185
B
GLY
186
n
167
GLY
186
B
ASN
187
n
168
ASN
187
B
ARG
188
n
169
ARG
188
B
LEU
189
n
170
LEU
189
B
LYS
190
n
171
LYS
190
B
THR
191
n
172
THR
191
B
LEU
192
n
173
LEU
192
B
PRO
193
n
174
PRO
193
B
TYR
194
n
175
TYR
194
B
GLU
195
n
176
GLU
195
B
GLU
196
n
177
GLU
196
B
VAL
197
n
178
VAL
197
B
LEU
198
n
179
LEU
198
B
GLU
199
n
180
GLU
199
B
GLN
200
n
181
GLN
200
B
ILE
201
n
182
ILE
201
B
PRO
202
n
183
PRO
202
B
GLY
203
n
184
GLY
203
B
ILE
204
n
185
ILE
204
B
ALA
205
n
186
ALA
205
B
GLU
206
n
187
GLU
206
B
ILE
207
n
188
ILE
207
B
LEU
208
n
189
LEU
208
B
LEU
209
n
190
LEU
209
B
GLU
210
n
191
GLU
210
B
ASP
211
n
192
ASP
211
B
ASN
212
n
193
ASN
212
B
PRO
213
n
194
PRO
213
B
TRP
214
n
195
TRP
214
B
ASP
215
n
196
ASP
215
B
CYS
216
n
197
CYS
216
B
THR
217
n
198
THR
217
B
CYS
218
n
199
CYS
218
B
ASP
219
n
200
ASP
219
B
LEU
220
n
201
LEU
220
B
LEU
221
n
202
LEU
221
B
SER
222
n
203
SER
222
B
LEU
223
n
204
LEU
223
B
LYS
224
n
205
LYS
224
B
GLU
225
n
206
GLU
225
B
TRP
226
n
207
TRP
226
B
LEU
227
n
208
LEU
227
B
GLU
228
n
209
GLU
228
B
ASN
229
n
210
ASN
229
B
ILE
230
n
211
ILE
230
B
PRO
231
n
212
PRO
231
B
LYS
232
n
213
LYS
232
B
ASN
233
n
214
ASN
233
B
ALA
234
n
215
ALA
234
B
LEU
235
n
216
LEU
235
B
ILE
236
n
217
ILE
236
B
GLY
237
n
218
GLY
237
B
ARG
238
n
219
ARG
238
B
VAL
239
n
220
VAL
239
B
VAL
240
n
221
VAL
240
B
CYS
241
n
222
CYS
241
B
GLU
242
n
223
GLU
242
B
ALA
243
n
224
ALA
243
B
PRO
244
n
225
PRO
244
B
THR
245
n
226
THR
245
B
ARG
246
n
227
ARG
246
B
LEU
247
n
228
LEU
247
B
GLN
248
n
229
GLN
248
B
GLY
249
n
230
GLY
249
B
LYS
250
n
231
LYS
250
B
ASP
251
n
232
ASP
251
B
LEU
252
n
233
LEU
252
B
ASN
253
n
234
ASN
253
B
GLU
254
n
235
GLU
254
B
THR
255
n
236
THR
255
B
THR
256
n
237
THR
256
B
GLU
257
n
238
GLU
257
B
GLN
258
n
239
GLN
258
B
ASP
259
n
240
ASP
259
B
LEU
260
n
241
LEU
260
B
CYS
261
n
242
CYS
261
B
PRO
262
n
243
PRO
262
B
n
244
263
B
n
245
264
B
n
246
265
B
n
247
266
B
n
248
267
B
n
249
268
B
n
250
269
B
n
251
270
B
author_defined_assembly
2
dimeric
A
ASN
299
GLYCOSYLATION SITE
A
ASN
279
ASN
A
ASN
254
GLYCOSYLATION SITE
A
ASN
234
ASN
B
ASN
253
GLYCOSYLATION SITE
B
ASN
234
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
25
A
N
ARG
5
A
O
THR
48
A
O
THR
28
A
N
ALA
41
A
N
ALA
21
A
O
ILE
84
A
O
ILE
64
A
O
VAL
81
A
O
VAL
61
A
N
ILE
72
A
N
ILE
52
A
N
GLY
35
A
N
GLY
15
A
O
THR
114
A
O
THR
94
A
O
VAL
109
A
O
VAL
89
A
N
CYS
98
A
N
CYS
78
A
O
GLU
97
A
O
GLU
77
A
N
ASN
58
A
N
ASN
38
A
N
LYS
59
A
N
LYS
39
A
O
LYS
62
A
O
LYS
42
A
N
THR
127
A
N
THR
107
A
O
SER
150
A
O
SER
130
A
N
LYS
135
A
N
LYS
115
A
O
TYR
224
A
O
TYR
204
A
O
ALA
221
A
O
ALA
201
A
N
TYR
205
A
N
TYR
185
A
O
THR
210
A
O
THR
190
A
N
GLU
156
A
N
GLU
136
A
N
LYS
161
A
N
LYS
141
A
O
LEU
164
A
O
LEU
144
A
N
LYS
135
A
N
LYS
115
A
O
TYR
224
A
O
TYR
204
A
O
ALA
221
A
O
ALA
201
A
N
TYR
205
A
N
TYR
185
A
N
ALA
209
A
N
ALA
189
A
O
ARG
216
A
O
ARG
196
A
N
ALA
143
A
N
ALA
123
A
O
ILE
194
A
O
ILE
174
A
O
GLN
193
A
O
GLN
173
A
N
LYS
176
A
N
LYS
156
A
N
ARG
237
A
N
ARG
217
A
O
VAL
260
A
O
VAL
240
A
N
VAL
253
A
N
VAL
233
A
O
LEU
291
A
O
LEU
271
A
N
HIS
245
A
N
HIS
225
A
O
THR
318
A
O
THR
298
A
O
ALA
315
A
O
ALA
295
A
N
TYR
300
A
N
TYR
280
A
O
VAL
303
A
O
VAL
283
A
N
LYS
268
A
N
LYS
248
A
N
LEU
271
A
N
LEU
251
A
O
GLU
274
A
O
GLU
254
B
N
VAL
40
B
N
VAL
21
B
O
PHE
64
B
O
PHE
45
B
N
TYR
61
B
N
TYR
42
B
O
VAL
85
B
O
VAL
66
B
N
LEU
87
B
N
LEU
68
B
O
HIS
112
B
O
HIS
93
B
N
LEU
111
B
N
LEU
92
B
O
TYR
134
B
O
TYR
115
B
N
LEU
135
B
N
LEU
116
B
O
ILE
160
B
O
ILE
141
B
N
LEU
159
B
N
LEU
140
B
O
HIS
181
B
O
HIS
162
B
N
LEU
182
B
N
LEU
163
B
O
LEU
208
B
O
LEU
189
B
N
LEU
73
B
N
LEU
54
B
O
GLU
96
B
O
GLU
77
B
N
PHE
121
B
N
PHE
102
B
O
ASP
144
B
O
ASP
125
B
N
TRP
214
B
N
TRP
195
B
O
GLU
242
B
O
GLU
223
1
A
CG
ASN
170
A
CG
ASN
150
1
Y
1
A
OD1
ASN
170
A
OD1
ASN
150
1
Y
1
A
ND2
ASN
170
A
ND2
ASN
150
1
Y
1
A
CG
ASN
172
A
CG
ASN
152
1
Y
1
A
OD1
ASN
172
A
OD1
ASN
152
1
Y
1
A
ND2
ASN
172
A
ND2
ASN
152
1
Y
1
A
ALA
321
A
ALA
301
1
Y
1
A
LEU
322
A
LEU
302
1
Y
1
A
SER
323
A
SER
303
1
Y
1
A
ARG
324
A
ARG
304
1
Y
1
A
LEU
325
A
LEU
305
1
Y
1
A
VAL
326
A
VAL
306
1
Y
1
A
PRO
327
A
PRO
307
1
Y
1
A
ARG
328
A
ARG
308
1
Y
1
B
THR
20
B
THR
1
1
Y
1
B
GLY
21
B
GLY
2
1
Y
1
B
LEU
263
B
LEU
244
1
Y
1
B
LYS
264
B
LYS
245
1
Y
1
B
SER
265
B
SER
246
1
Y
1
B
ARG
266
B
ARG
247
1
Y
1
B
LEU
267
B
LEU
248
1
Y
1
B
VAL
268
B
VAL
249
1
Y
1
B
PRO
269
B
PRO
250
1
Y
1
B
ARG
270
B
ARG
251
1
Y
1
A
ALA
94
-135.91
-67.54
1
A
ARG
189
-109.35
-89.52
1
A
ASP
281
-112.78
64.35
1
B
LYS
27
69.31
-1.43
1
B
PRO
56
-42.80
151.83
1
B
HIS
66
-41.52
-103.45
1
B
MET
89
-117.57
75.35
1
B
HIS
95
-140.60
-22.87
1
B
ASN
116
-137.09
-155.55
1
B
PHE
126
-94.22
44.66
1
B
PHE
139
51.60
76.20
1
B
ARG
143
-129.82
-62.66
1
B
LEU
156
-64.30
95.68
1
B
GLU
196
73.69
-51.05
1
B
ILE
201
-119.49
71.35
74.937
12.41
0.00
2.02
-3.79
0.00
-8.29
0.907
0.884
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.2691
0.2625
0.2628
2.9908
38.615
758
15094
5.02
98.15
0.46
1
1.41
MOLECULAR REPLACEMENT
30.71
0.90
1.11
4RCW, 2YD6
ML
FLAT BULK SOLVENT MODEL
2.9908
38.615
2
4287
47
0
4238
0.016
4378
0.846
5939
15.045
1648
0.044
681
0.003
782
0.3698
0.3848
3.2216
133
2736
94.00
0.3407
0.3083
3.5456
147
2854
99.00
0.2694
0.2601
4.0582
163
2891
99.00
0.2271
0.2246
5.1110
160
2901
100.00
0.2403
0.2283
38.6177
155
2954
99.00
59.2
2.9908
50.00
4RCA
15343
15130
2.59
1
14.1
4.4
98.6
2.9908
3.05
1
95.9
3.05
3.11
1
95.6
3.11
3.17
1
96.4
3.17
3.23
1
97.6
3.23
3.30
1
98.2
3.30
3.38
1
99.1
3.38
3.46
1
99.1
3.46
3.56
1
99.0
3.56
3.66
1
99.3
3.66
3.78
1
99.2
3.78
3.91
1
99.5
3.91
4.07
1
99.4
4.07
4.26
1
99.7
4.26
4.48
1
99.6
4.48
4.76
1
99.7
4.76
5.13
1
99.5
5.13
5.64
1
99.5
5.64
6.46
1
99.7
6.46
8.13
1
99.9
8.13
50.00
1
96.5
refinement
PHENIX
1.8.4_1496
model building
PHENIX
refinement
REFMAC
5.7.0029
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHENIX
data collection
HKL-2000
Crystal structure of human PTPdelta and human Slitrk1 complex
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
3
N
N
5
N
N
A
PRO
278
A
PRO
258
HELX_P
A
MET
282
A
MET
262
5
1
5
B
PHE
78
B
PHE
59
HELX_P
B
TYR
82
B
TYR
63
5
2
5
B
PRO
147
B
PRO
128
HELX_P
B
PHE
150
B
PHE
131
5
3
4
B
LEU
220
B
LEU
201
HELX_P
B
ILE
230
B
ILE
211
1
4
11
B
ASP
251
B
ASP
232
HELX_P
B
THR
255
B
THR
236
5
5
5
B
THR
256
B
THR
237
HELX_P
B
CYS
261
B
CYS
242
1
6
6
disulf
2.030
A
CYS
45
A
SG
CYS
25
1_555
A
CYS
98
A
SG
CYS
78
1_555
disulf
2.031
A
CYS
147
A
SG
CYS
127
1_555
A
CYS
207
A
SG
CYS
187
1_555
disulf
2.029
A
CYS
257
A
SG
CYS
237
1_555
A
CYS
302
A
SG
CYS
282
1_555
disulf
2.039
B
CYS
24
B
SG
CYS
5
1_555
B
CYS
31
B
SG
CYS
12
1_555
disulf
2.042
B
CYS
29
B
SG
CYS
10
1_555
B
CYS
42
B
SG
CYS
23
1_555
disulf
2.030
B
CYS
216
B
SG
CYS
197
1_555
B
CYS
241
B
SG
CYS
222
1_555
disulf
2.040
B
CYS
218
B
SG
CYS
199
1_555
B
CYS
261
B
SG
CYS
242
1_555
covale
2.326
one
N-Glycosylation
A
ASN
254
A
ND2
ASN
234
1_555
A
NAG
402
D
C1
NAG
1_555
covale
2.487
one
N-Glycosylation
A
ASN
299
A
ND2
ASN
279
1_555
A
NAG
401
C
C1
NAG
1_555
covale
2.576
one
N-Glycosylation
B
ASN
253
B
ND2
ASN
234
1_555
B
NAG
302
F
C1
NAG
1_555
SIGNALING PROTEIN
Leucine rich-repeat, Ig-like domain, synaptic adhesion, SIGNALING PROTEIN
A
ASP
50
A
ASP
30
1
A
PRO
51
A
PRO
31
1.13
A
GLN
85
A
GLN
65
1
A
PRO
86
A
PRO
66
-3.85
A
THR
89
A
THR
69
1
A
PRO
90
A
PRO
70
1.22
A
GLU
93
A
GLU
73
1
A
ALA
94
A
ALA
74
7.65
A
ASN
152
A
ASN
132
1
A
PRO
153
A
PRO
133
-3.68
A
SER
262
A
SER
242
1
A
PRO
263
A
PRO
243
0.60
B
VAL
23
B
VAL
4
1
B
CYS
24
B
CYS
5
9.67
B
ILE
34
B
ILE
15
1
B
GLU
35
B
GLU
16
6.44
B
ALA
243
B
ALA
224
1
B
PRO
244
B
PRO
225
-3.55
PTPRD_HUMAN
UNP
1
21
P23468
ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA
SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS
ESIGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRELREVRRVPPRFSIPPTNHEIMPGGSVNITCVAV
GSPMPYVKWMLGAEDLTPEDDMPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKAL
SLIK1_HUMAN
UNP
2
20
Q96PX8
TGDVCKEKICSCNEIEGDLHVDCEKKGFTSLQRFTAPTSQFYHLFLHGNSLTRLFPNEFANFYNAVSLHMENNGLHEIVP
GAFLGLQLVKRLHINNNKIKSFRKQTFLGLDDLEYLQADFNLLRDIDPGAFQDLNKLEVLILNDNLISTLPANVFQYVPI
THLDLRGNRLKTLPYEEVLEQIPGIAEILLEDNPWDCTCDLLSLKEWLENIPKNALIGRVVCEAPTRLQGKDLNETTEQD
LCPLK
21
322
4RCA
21
322
P23468
A
1
1
302
20
264
4RCA
20
264
Q96PX8
B
2
1
245
1
expression tag
SER
323
4RCA
A
P23468
UNP
303
1
expression tag
ARG
324
4RCA
A
P23468
UNP
304
1
expression tag
LEU
325
4RCA
A
P23468
UNP
305
1
expression tag
VAL
326
4RCA
A
P23468
UNP
306
1
expression tag
PRO
327
4RCA
A
P23468
UNP
307
1
expression tag
ARG
328
4RCA
A
P23468
UNP
308
2
expression tag
SER
265
4RCA
B
Q96PX8
UNP
246
2
expression tag
ARG
266
4RCA
B
Q96PX8
UNP
247
2
expression tag
LEU
267
4RCA
B
Q96PX8
UNP
248
2
expression tag
VAL
268
4RCA
B
Q96PX8
UNP
249
2
expression tag
PRO
269
4RCA
B
Q96PX8
UNP
250
2
expression tag
ARG
270
4RCA
B
Q96PX8
UNP
251
4
5
2
5
4
3
3
5
8
2
2
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
ARG
25
A
ARG
5
A
ARG
28
A
ARG
8
A
ALA
41
A
ALA
21
A
THR
48
A
THR
28
A
GLY
79
A
GLY
59
A
ILE
84
A
ILE
64
A
PHE
69
A
PHE
49
A
GLU
73
A
GLU
53
A
GLN
33
A
GLN
13
A
VAL
36
A
VAL
16
A
GLU
106
A
GLU
86
A
LEU
116
A
LEU
96
A
ALA
94
A
ALA
74
A
SER
101
A
SER
81
A
LYS
54
A
LYS
34
A
LYS
59
A
LYS
39
A
LYS
62
A
LYS
42
A
LYS
63
A
LYS
43
A
THR
127
A
THR
107
A
MET
130
A
MET
110
A
ALA
148
A
ALA
128
A
SER
150
A
SER
130
A
LYS
135
A
LYS
115
A
GLU
138
A
GLU
118
A
ALA
221
A
ALA
201
A
ARG
226
A
ARG
206
A
GLY
203
A
GLY
183
A
THR
210
A
THR
190
A
GLU
156
A
GLU
136
A
LYS
161
A
LYS
141
A
LEU
164
A
LEU
144
A
PRO
165
A
PRO
145
A
LYS
135
A
LYS
115
A
GLU
138
A
GLU
118
A
ALA
221
A
ALA
201
A
ARG
226
A
ARG
206
A
GLY
203
A
GLY
183
A
THR
210
A
THR
190
A
THR
215
A
THR
195
A
TYR
217
A
TYR
197
A
ALA
143
A
ALA
123
A
MET
145
A
MET
125
A
LEU
192
A
LEU
172
A
ILE
194
A
ILE
174
A
ILE
175
A
ILE
155
A
GLN
177
A
GLN
157
A
VAL
234
A
VAL
214
A
ILE
240
A
ILE
220
A
GLY
251
A
GLY
231
A
SER
262
A
SER
242
A
ARG
286
A
ARG
266
A
VAL
294
A
VAL
274
A
HIS
245
A
HIS
225
A
ILE
247
A
ILE
227
A
GLY
309
A
GLY
289
A
VAL
319
A
VAL
299
A
ALA
298
A
ALA
278
A
SER
306
A
SER
286
A
TYR
266
A
TYR
246
A
LEU
271
A
LEU
251
A
GLU
274
A
GLU
254
A
ASP
275
A
ASP
255
B
LEU
38
B
LEU
19
B
ASP
41
B
ASP
22
B
TYR
61
B
TYR
42
B
PHE
64
B
PHE
45
B
ALA
84
B
ALA
65
B
HIS
88
B
HIS
69
B
ARG
110
B
ARG
91
B
HIS
112
B
HIS
93
B
TYR
134
B
TYR
115
B
GLN
136
B
GLN
117
B
VAL
158
B
VAL
139
B
ILE
160
B
ILE
141
B
HIS
181
B
HIS
162
B
ASP
183
B
ASP
164
B
GLU
206
B
GLU
187
B
LEU
208
B
LEU
189
B
ARG
72
B
ARG
53
B
LEU
73
B
LEU
54
B
GLU
96
B
GLU
77
B
ILE
97
B
ILE
78
B
SER
120
B
SER
101
B
PHE
121
B
PHE
102
B
ASP
144
B
ASP
125
B
ILE
145
B
ILE
126
B
TRP
214
B
TRP
195
B
ASP
215
B
ASP
196
B
CYS
241
B
CYS
222
B
ALA
243
B
ALA
224
4
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