0.011310
0.000000
0.000000
0.000000
0.011310
0.000000
0.000000
0.000000
0.006560
0.00000
0.00000
0.00000
Tamulaitiene, G.
Silanskas, A.
Grazulis, S.
Zaremba, M.
Siksnys, V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
88.414
88.414
152.437
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
N
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
N
N
492
S
C
N
493
N
C
N
494
N
O
N
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
N
502
N
O
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
N
520
N
C
N
521
N
C
N
522
N
O
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
42
14022
14030
10.1093/nar/gku1237
25429979
Crystal structure of the R-protein of the multisubunit ATP-dependent restriction endonuclease NgoAVII.
2014
10.2210/pdb4rd5/pdb
pdb_00004rd5
100
1
PIXEL
2013-05-21
PSI PILATUS 6M
Double crystal
SINGLE WAVELENGTH
M
x-ray
1
0.976300
1.0
P13 (MX1)
PETRA III, EMBL c/o DESY
0.976300
SYNCHROTRON
PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
20666.051
Restriction endonuclease R.NgoVII
3.1.21.4
2
man
polymer
4828.145
DNA (5'-D(*CP*CP*CP*TP*AP*AP*GP*CP*GP*GP*CP*AP*AP*TP*CP*C)-3')
2
syn
polymer
4970.214
DNA (5'-D(*GP*GP*GP*AP*TP*TP*GP*CP*CP*GP*CP*TP*TP*AP*GP*G)-3')
2
syn
polymer
18.015
water
86
nat
water
no
no
MSHLENCLGVQKIAPEQIRQLFAQTSEYHFSIPAKTEEKSNLNVFFGEGRRDKRGFVKPRPWYEVELIVSKDITSQEGYP
VLKSFTVITDDGWQFQCKTSGDYSKNFRSENDLKTLGKWIKGRLESHGCLQNNEKITHETLREYGNDHFELRSTDNPDVW
LLSFKGKNSGGHHHHHHG
MSHLENCLGVQKIAPEQIRQLFAQTSEYHFSIPAKTEEKSNLNVFFGEGRRDKRGFVKPRPWYEVELIVSKDITSQEGYP
VLKSFTVITDDGWQFQCKTSGDYSKNFRSENDLKTLGKWIKGRLESHGCLQNNEKITHETLREYGNDHFELRSTDNPDVW
LLSFKGKNSGGHHHHHHG
A,B
polypeptide(L)
no
no
(DC)(DC)(DC)(DT)(DA)(DA)(DG)(DC)(DG)(DG)(DC)(DA)(DA)(DT)(DC)(DC)
CCCTAAGCGGCAATCC
C,E
polydeoxyribonucleotide
no
no
(DG)(DG)(DG)(DA)(DT)(DT)(DG)(DC)(DC)(DG)(DC)(DT)(DT)(DA)(DG)(DG)
GGGATTGCCGCTTAGG
D,F
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 700825 / FA 1090
sample
NGO0364
242231
Neisseria gonorrhoeae
562
Escherichia coli
ER2566
plasmid
pLATE31
1
2.44
49.69
VAPOR DIFFUSION, SITTING DROP
6.5
Crystallization buffer was 0.1 M MES-imidazole pH 6.5, 12.5% w/v PEG1000, 12.5% w/v PEG3350, 12.5% MPD, 0.02 M of each Glu, Ala, Gly, Lys, Ser, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
-13.421
1
19
C
3
D
31
-5.560
C_DC3:DG31_D
1
-19.665
-0.199
0.426
-0.472
-16.578
C
4
D
30
-1.849
C_DT4:DA30_D
2
-16.936
-0.647
0.604
0.395
-3.675
1
20
C
5
D
29
-7.990
C_DA5:DT29_D
3
-19.815
-0.056
-0.074
-0.405
14.736
1
20
C
6
D
28
-1.115
C_DA6:DT28_D
4
-2.431
-0.098
0.429
-0.129
7.756
1
19
C
7
D
27
-6.161
C_DG7:DC27_D
5
-33.179
0.364
0.992
-0.039
-3.372
1
19
C
8
D
26
0.344
C_DC8:DG26_D
6
-1.315
0.086
0.503
0.020
8.386
1
19
C
9
D
25
-5.250
C_DG9:DC25_D
7
-10.634
0.318
0.664
-0.021
11.337
1
19
C
10
D
24
2.735
C_DG10:DC24_D
8
-22.327
0.203
0.573
-0.259
-0.412
1
19
C
11
D
23
-6.082
C_DC11:DG23_D
9
-23.437
0.378
0.675
-0.375
0.547
1
20
C
12
D
22
3.631
C_DA12:DT22_D
10
0.370
0.130
0.127
-0.329
4.019
1
20
C
13
D
21
4.673
C_DA13:DT21_D
11
-14.669
0.087
0.251
0.125
6.803
1
20
C
14
D
20
3.459
C_DT14:DA20_D
12
-13.418
0.328
0.024
-0.218
6.745
1
19
C
15
D
19
-2.662
C_DC15:DG19_D
13
-9.378
-0.171
0.039
-0.174
5.761
1
19
C
16
D
18
-7.714
C_DC16:DG18_D
14
-24.994
-0.944
0.235
0.084
0.112
1
19
E
3
F
31
4.495
E_DC3:DG31_F
15
-1.665
-0.247
-0.163
0.149
-2.737
1
20
E
4
F
30
4.413
E_DT4:DA30_F
16
-16.367
-0.583
0.246
-0.152
-6.011
1
20
E
5
F
29
-2.427
E_DA5:DT29_F
17
-12.734
0.308
0.061
-0.366
4.157
1
20
E
6
F
28
5.209
E_DA6:DT28_F
18
-4.822
-0.295
0.066
-0.301
5.259
1
19
E
7
F
27
-12.094
E_DG7:DC27_F
19
-30.054
-0.008
0.906
-0.056
-5.074
1
19
E
8
F
26
-1.510
E_DC8:DG26_F
20
-1.577
0.320
0.373
-0.275
5.449
1
19
E
9
F
25
-8.093
E_DG9:DC25_F
21
-17.661
0.337
0.641
-0.206
10.625
1
19
E
10
F
24
0.552
E_DG10:DC24_F
22
-22.776
-0.243
0.507
-0.338
4.645
1
19
E
11
F
23
-5.436
E_DC11:DG23_F
23
-28.667
0.542
0.390
-0.307
0.872
1
20
E
12
F
22
0.995
E_DA12:DT22_F
24
0.238
0.484
0.248
-0.231
5.279
1
20
E
13
F
21
0.764
E_DA13:DT21_F
25
-12.274
0.745
0.211
-0.251
-3.542
1
20
E
14
F
20
-1.653
E_DT14:DA20_F
26
-23.385
0.532
0.376
-0.338
-5.432
1
19
E
15
F
19
0.977
E_DC15:DG19_F
27
-18.458
1.121
0.273
-0.599
5.575
1
E
16
F
18
17.681
E_DC16:DG18_F
28
-8.488
2.261
-0.056
0.547
3.344
35.065
C
C
3
4
4.749
D
D
31
30
3.389
2.854
-0.039
-0.182
CC_DC3DT4:DA30DG31_DD
1
3.477
-5.786
34.784
-0.744
0.604
2.987
41.252
C
C
4
5
-7.149
D
D
30
29
3.150
-5.008
-0.038
0.899
CC_DT4DA5:DT29DA30_DD
2
6.100
-8.707
40.522
1.786
0.677
2.844
31.766
C
C
5
6
2.347
D
D
29
28
2.846
1.283
0.312
0.566
CC_DA5DA6:DT28DT29_DD
3
-1.812
3.313
31.690
0.829
-0.859
3.437
46.376
C
C
6
7
-14.988
D
D
28
27
3.773
-11.670
-0.816
1.208
CC_DA6DG7:DC27DT28_DD
4
-4.775
6.132
44.721
2.645
0.581
3.789
38.381
C
C
7
8
-17.273
D
D
27
26
3.762
-11.102
1.992
0.614
CC_DG7DC8:DG26DC27_DD
5
8.982
-13.974
35.718
2.596
-1.685
3.093
37.249
C
C
8
9
-12.329
D
D
26
25
3.230
-7.820
-0.594
0.402
CC_DC8DG9:DC25DG26_DD
6
-0.760
1.199
36.440
1.644
0.832
3.461
31.873
C
C
9
10
-2.814
D
D
25
24
3.379
-1.541
0.729
-0.464
CC_DG9DG10:DC24DC25_DD
7
4.052
-7.401
31.585
-0.551
-0.552
3.828
41.994
C
C
10
11
-14.493
D
D
24
23
3.700
-10.200
-1.389
-0.065
CC_DG10DC11:DG23DC24_DD
8
-9.847
13.992
39.631
1.168
0.724
3.337
41.095
C
C
11
12
-9.569
D
D
23
22
3.346
-6.657
1.339
0.936
CC_DC11DA12:DT22DG23_DD
9
7.209
-10.362
39.955
2.083
-1.096
3.448
35.398
C
C
12
13
5.300
D
D
22
21
3.322
3.209
-0.899
0.543
CC_DA12DA13:DT21DT22_DD
10
-4.949
8.175
34.918
0.401
0.720
3.086
30.249
C
C
13
14
8.138
D
D
21
20
3.178
4.233
0.216
-0.496
CC_DA13DT14:DA20DT21_DD
11
1.157
-2.225
29.937
-1.775
-0.188
3.304
32.748
C
C
14
15
6.448
D
D
20
19
3.355
3.627
0.132
-0.313
CC_DT14DC15:DG19DA20_DD
12
1.545
-2.747
32.516
-1.194
0.038
2.798
26.251
C
C
15
16
15.740
D
D
19
18
3.125
7.061
0.763
-0.687
CC_DC15DC16:DG18DG19_DD
13
-1.079
2.406
25.277
-3.270
-1.949
3.349
39.073
E
E
3
4
2.239
F
F
31
30
3.353
1.497
0.332
-0.284
EE_DC3DT4:DA30DG31_FF
14
1.348
-2.016
39.024
-0.609
-0.331
3.489
42.837
E
E
4
5
-1.164
F
F
30
29
3.527
-0.850
-0.427
0.957
EE_DT4DA5:DT29DA30_FF
15
1.774
-2.430
42.794
1.402
0.775
3.111
28.597
E
E
5
6
4.026
F
F
29
28
3.062
1.987
0.090
0.815
EE_DA5DA6:DT28DT29_FF
16
0.423
-0.856
28.527
1.224
-0.092
3.193
48.325
E
E
6
7
-15.858
F
F
28
27
3.468
-12.758
-1.281
1.388
EE_DA6DG7:DC27DT28_FF
17
-10.042
12.481
45.671
2.740
0.744
3.718
42.196
E
E
7
8
-20.818
F
F
27
26
3.819
-14.597
1.910
0.549
EE_DG7DC8:DG26DC27_FF
18
8.731
-12.452
38.760
2.575
-1.569
3.150
35.749
E
E
8
9
-9.588
F
F
26
25
3.207
-5.860
-0.682
0.220
EE_DC8DG9:DC25DG26_FF
19
-1.120
1.833
35.264
1.185
0.953
3.425
29.113
E
E
9
10
-7.395
F
F
25
24
3.320
-3.696
0.899
-0.317
EE_DG9DG10:DC24DC25_FF
20
3.996
-7.995
28.610
0.211
-0.879
3.563
47.387
E
E
10
11
-12.440
F
F
24
23
3.579
-9.911
-1.267
0.314
EE_DG10DC11:DG23DC24_FF
21
-5.507
6.912
46.087
1.281
1.082
3.459
38.975
E
E
11
12
-6.352
F
F
23
22
3.447
-4.224
1.326
0.761
EE_DC11DA12:DT22DG23_FF
22
3.877
-5.830
38.567
1.682
-1.490
3.372
37.210
E
E
12
13
7.104
F
F
22
21
3.229
4.514
-1.188
0.520
EE_DA12DA13:DT21DT22_FF
23
-3.928
6.181
36.743
0.206
1.331
3.452
26.191
E
E
13
14
-1.220
F
F
21
20
3.480
-0.552
0.314
-1.436
EE_DA13DT14:DA20DT21_FF
24
-2.976
6.582
26.019
-3.011
-1.550
3.323
39.462
E
E
14
15
6.332
F
F
20
19
3.331
4.265
0.519
-0.135
EE_DT14DC15:DG19DA20_FF
25
2.295
-3.407
39.176
-0.713
-0.493
3.042
37.519
E
E
15
16
14.225
F
F
19
18
3.003
9.018
1.082
-0.083
EE_DC15DC16:DG18DG19_FF
26
6.747
-10.642
35.846
-1.245
-0.847
diffrn_source
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Database references
Data collection
Data collection
Database references
1
0
2014-12-24
1
1
2014-12-31
1
2
2018-03-07
1
3
2024-02-28
_diffrn_source.pdbx_synchrotron_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2014-09-18
REL
REL
HOH
water
Synthetic construct
sample
Synthetic construct
sample
HOH
1
4
HOH
HOH
401
A
HOH
2
4
HOH
HOH
402
A
HOH
3
4
HOH
HOH
403
A
HOH
4
4
HOH
HOH
404
A
HOH
5
4
HOH
HOH
405
A
HOH
6
4
HOH
HOH
406
A
HOH
7
4
HOH
HOH
407
A
HOH
8
4
HOH
HOH
408
A
HOH
9
4
HOH
HOH
409
A
HOH
10
4
HOH
HOH
410
A
HOH
11
4
HOH
HOH
411
A
HOH
12
4
HOH
HOH
412
A
HOH
14
4
HOH
HOH
413
A
HOH
15
4
HOH
HOH
414
A
HOH
16
4
HOH
HOH
415
A
HOH
17
4
HOH
HOH
416
A
HOH
24
4
HOH
HOH
417
A
HOH
25
4
HOH
HOH
418
A
HOH
26
4
HOH
HOH
419
A
HOH
28
4
HOH
HOH
420
A
HOH
29
4
HOH
HOH
421
A
HOH
30
4
HOH
HOH
422
A
HOH
32
4
HOH
HOH
423
A
HOH
33
4
HOH
HOH
424
A
HOH
34
4
HOH
HOH
425
A
HOH
35
4
HOH
HOH
426
A
HOH
38
4
HOH
HOH
427
A
HOH
39
4
HOH
HOH
428
A
HOH
41
4
HOH
HOH
429
A
HOH
42
4
HOH
HOH
430
A
HOH
43
4
HOH
HOH
431
A
HOH
44
4
HOH
HOH
432
A
HOH
45
4
HOH
HOH
433
A
HOH
46
4
HOH
HOH
434
A
HOH
47
4
HOH
HOH
435
A
HOH
48
4
HOH
HOH
436
A
HOH
49
4
HOH
HOH
437
A
HOH
50
4
HOH
HOH
438
A
HOH
52
4
HOH
HOH
439
A
HOH
53
4
HOH
HOH
440
A
HOH
55
4
HOH
HOH
441
A
HOH
57
4
HOH
HOH
442
A
HOH
58
4
HOH
HOH
443
A
HOH
59
4
HOH
HOH
444
A
HOH
60
4
HOH
HOH
445
A
HOH
61
4
HOH
HOH
446
A
HOH
62
4
HOH
HOH
447
A
HOH
63
4
HOH
HOH
448
A
HOH
66
4
HOH
HOH
449
A
HOH
68
4
HOH
HOH
450
A
HOH
69
4
HOH
HOH
451
A
HOH
70
4
HOH
HOH
452
A
HOH
71
4
HOH
HOH
453
A
HOH
72
4
HOH
HOH
454
A
HOH
74
4
HOH
HOH
455
A
HOH
75
4
HOH
HOH
456
A
HOH
76
4
HOH
HOH
457
A
HOH
78
4
HOH
HOH
458
A
HOH
79
4
HOH
HOH
459
A
HOH
80
4
HOH
HOH
460
A
HOH
81
4
HOH
HOH
461
A
HOH
82
4
HOH
HOH
462
A
HOH
84
4
HOH
HOH
463
A
HOH
85
4
HOH
HOH
464
A
HOH
86
4
HOH
HOH
465
A
HOH
19
4
HOH
HOH
401
B
HOH
20
4
HOH
HOH
402
B
HOH
21
4
HOH
HOH
403
B
HOH
37
4
HOH
HOH
404
B
HOH
51
4
HOH
HOH
405
B
HOH
54
4
HOH
HOH
406
B
HOH
64
4
HOH
HOH
407
B
HOH
73
4
HOH
HOH
408
B
HOH
18
4
HOH
HOH
101
C
HOH
27
4
HOH
HOH
102
C
HOH
67
4
HOH
HOH
103
C
HOH
13
4
HOH
HOH
101
D
HOH
31
4
HOH
HOH
102
D
HOH
36
4
HOH
HOH
103
D
HOH
40
4
HOH
HOH
104
D
HOH
56
4
HOH
HOH
105
D
HOH
77
4
HOH
HOH
106
D
HOH
23
4
HOH
HOH
101
E
HOH
65
4
HOH
HOH
102
E
HOH
83
4
HOH
HOH
103
E
HOH
22
4
HOH
HOH
101
F
4.000
4.000
76.480
76.480
n
1
178
A
n
2
179
A
n
3
180
A
n
4
181
A
n
5
182
A
n
6
183
A
n
7
184
A
LEU
185
n
8
LEU
185
A
GLY
186
n
9
GLY
186
A
VAL
187
n
10
VAL
187
A
GLN
188
n
11
GLN
188
A
LYS
189
n
12
LYS
189
A
ILE
190
n
13
ILE
190
A
ALA
191
n
14
ALA
191
A
PRO
192
n
15
PRO
192
A
GLU
193
n
16
GLU
193
A
GLN
194
n
17
GLN
194
A
ILE
195
n
18
ILE
195
A
ARG
196
n
19
ARG
196
A
GLN
197
n
20
GLN
197
A
LEU
198
n
21
LEU
198
A
PHE
199
n
22
PHE
199
A
ALA
200
n
23
ALA
200
A
GLN
201
n
24
GLN
201
A
THR
202
n
25
THR
202
A
SER
203
n
26
SER
203
A
GLU
204
n
27
GLU
204
A
TYR
205
n
28
TYR
205
A
HIS
206
n
29
HIS
206
A
PHE
207
n
30
PHE
207
A
SER
208
n
31
SER
208
A
ILE
209
n
32
ILE
209
A
PRO
210
n
33
PRO
210
A
ALA
211
n
34
ALA
211
A
LYS
212
n
35
LYS
212
A
THR
213
n
36
THR
213
A
GLU
214
n
37
GLU
214
A
GLU
215
n
38
GLU
215
A
LYS
216
n
39
LYS
216
A
SER
217
n
40
SER
217
A
ASN
218
n
41
ASN
218
A
LEU
219
n
42
LEU
219
A
ASN
220
n
43
ASN
220
A
VAL
221
n
44
VAL
221
A
PHE
222
n
45
PHE
222
A
PHE
223
n
46
PHE
223
A
GLY
224
n
47
GLY
224
A
GLU
225
n
48
GLU
225
A
GLY
226
n
49
GLY
226
A
ARG
227
n
50
ARG
227
A
ARG
228
n
51
ARG
228
A
ASP
229
n
52
ASP
229
A
LYS
230
n
53
LYS
230
A
ARG
231
n
54
ARG
231
A
GLY
232
n
55
GLY
232
A
PHE
233
n
56
PHE
233
A
VAL
234
n
57
VAL
234
A
LYS
235
n
58
LYS
235
A
PRO
236
n
59
PRO
236
A
ARG
237
n
60
ARG
237
A
PRO
238
n
61
PRO
238
A
TRP
239
n
62
TRP
239
A
TYR
240
n
63
TYR
240
A
GLU
241
n
64
GLU
241
A
VAL
242
n
65
VAL
242
A
GLU
243
n
66
GLU
243
A
LEU
244
n
67
LEU
244
A
ILE
245
n
68
ILE
245
A
VAL
246
n
69
VAL
246
A
SER
247
n
70
SER
247
A
LYS
248
n
71
LYS
248
A
ASP
249
n
72
ASP
249
A
ILE
250
n
73
ILE
250
A
THR
251
n
74
THR
251
A
SER
252
n
75
SER
252
A
GLN
253
n
76
GLN
253
A
GLU
254
n
77
GLU
254
A
GLY
255
n
78
GLY
255
A
TYR
256
n
79
TYR
256
A
PRO
257
n
80
PRO
257
A
VAL
258
n
81
VAL
258
A
LEU
259
n
82
LEU
259
A
LYS
260
n
83
LYS
260
A
SER
261
n
84
SER
261
A
PHE
262
n
85
PHE
262
A
THR
263
n
86
THR
263
A
VAL
264
n
87
VAL
264
A
ILE
265
n
88
ILE
265
A
THR
266
n
89
THR
266
A
ASP
267
n
90
ASP
267
A
ASP
268
n
91
ASP
268
A
GLY
269
n
92
GLY
269
A
TRP
270
n
93
TRP
270
A
GLN
271
n
94
GLN
271
A
PHE
272
n
95
PHE
272
A
GLN
273
n
96
GLN
273
A
CYS
274
n
97
CYS
274
A
LYS
275
n
98
LYS
275
A
THR
276
n
99
THR
276
A
SER
277
n
100
SER
277
A
GLY
278
n
101
GLY
278
A
ASP
279
n
102
ASP
279
A
TYR
280
n
103
TYR
280
A
SER
281
n
104
SER
281
A
LYS
282
n
105
LYS
282
A
ASN
283
n
106
ASN
283
A
PHE
284
n
107
PHE
284
A
ARG
285
n
108
ARG
285
A
SER
286
n
109
SER
286
A
GLU
287
n
110
GLU
287
A
ASN
288
n
111
ASN
288
A
ASP
289
n
112
ASP
289
A
LEU
290
n
113
LEU
290
A
LYS
291
n
114
LYS
291
A
THR
292
n
115
THR
292
A
LEU
293
n
116
LEU
293
A
GLY
294
n
117
GLY
294
A
LYS
295
n
118
LYS
295
A
TRP
296
n
119
TRP
296
A
ILE
297
n
120
ILE
297
A
LYS
298
n
121
LYS
298
A
GLY
299
n
122
GLY
299
A
ARG
300
n
123
ARG
300
A
LEU
301
n
124
LEU
301
A
GLU
302
n
125
GLU
302
A
SER
303
n
126
SER
303
A
HIS
304
n
127
HIS
304
A
GLY
305
n
128
GLY
305
A
CYS
306
n
129
CYS
306
A
LEU
307
n
130
LEU
307
A
GLN
308
n
131
GLN
308
A
ASN
309
n
132
ASN
309
A
ASN
310
n
133
ASN
310
A
GLU
311
n
134
GLU
311
A
LYS
312
n
135
LYS
312
A
ILE
313
n
136
ILE
313
A
THR
314
n
137
THR
314
A
HIS
315
n
138
HIS
315
A
GLU
316
n
139
GLU
316
A
THR
317
n
140
THR
317
A
LEU
318
n
141
LEU
318
A
ARG
319
n
142
ARG
319
A
GLU
320
n
143
GLU
320
A
TYR
321
n
144
TYR
321
A
GLY
322
n
145
GLY
322
A
ASN
323
n
146
ASN
323
A
ASP
324
n
147
ASP
324
A
HIS
325
n
148
HIS
325
A
PHE
326
n
149
PHE
326
A
GLU
327
n
150
GLU
327
A
LEU
328
n
151
LEU
328
A
ARG
329
n
152
ARG
329
A
SER
330
n
153
SER
330
A
THR
331
n
154
THR
331
A
ASP
332
n
155
ASP
332
A
ASN
333
n
156
ASN
333
A
PRO
334
n
157
PRO
334
A
ASP
335
n
158
ASP
335
A
VAL
336
n
159
VAL
336
A
TRP
337
n
160
TRP
337
A
LEU
338
n
161
LEU
338
A
LEU
339
n
162
LEU
339
A
SER
340
n
163
SER
340
A
PHE
341
n
164
PHE
341
A
LYS
342
n
165
LYS
342
A
GLY
343
n
166
GLY
343
A
LYS
344
n
167
LYS
344
A
n
168
345
A
n
169
346
A
n
170
347
A
n
171
348
A
n
172
349
A
n
173
350
A
n
174
351
A
n
175
352
A
n
176
353
A
n
177
354
A
n
178
355
A
n
1
178
B
n
2
179
B
n
3
180
B
n
4
181
B
n
5
182
B
n
6
183
B
n
7
184
B
LEU
185
n
8
LEU
185
B
GLY
186
n
9
GLY
186
B
VAL
187
n
10
VAL
187
B
GLN
188
n
11
GLN
188
B
LYS
189
n
12
LYS
189
B
ILE
190
n
13
ILE
190
B
ALA
191
n
14
ALA
191
B
PRO
192
n
15
PRO
192
B
GLU
193
n
16
GLU
193
B
GLN
194
n
17
GLN
194
B
ILE
195
n
18
ILE
195
B
ARG
196
n
19
ARG
196
B
GLN
197
n
20
GLN
197
B
LEU
198
n
21
LEU
198
B
PHE
199
n
22
PHE
199
B
ALA
200
n
23
ALA
200
B
GLN
201
n
24
GLN
201
B
THR
202
n
25
THR
202
B
SER
203
n
26
SER
203
B
GLU
204
n
27
GLU
204
B
TYR
205
n
28
TYR
205
B
HIS
206
n
29
HIS
206
B
PHE
207
n
30
PHE
207
B
SER
208
n
31
SER
208
B
ILE
209
n
32
ILE
209
B
PRO
210
n
33
PRO
210
B
ALA
211
n
34
ALA
211
B
LYS
212
n
35
LYS
212
B
THR
213
n
36
THR
213
B
GLU
214
n
37
GLU
214
B
GLU
215
n
38
GLU
215
B
LYS
216
n
39
LYS
216
B
SER
217
n
40
SER
217
B
ASN
218
n
41
ASN
218
B
LEU
219
n
42
LEU
219
B
ASN
220
n
43
ASN
220
B
VAL
221
n
44
VAL
221
B
PHE
222
n
45
PHE
222
B
PHE
223
n
46
PHE
223
B
GLY
224
n
47
GLY
224
B
GLU
225
n
48
GLU
225
B
GLY
226
n
49
GLY
226
B
ARG
227
n
50
ARG
227
B
ARG
228
n
51
ARG
228
B
ASP
229
n
52
ASP
229
B
LYS
230
n
53
LYS
230
B
ARG
231
n
54
ARG
231
B
GLY
232
n
55
GLY
232
B
PHE
233
n
56
PHE
233
B
VAL
234
n
57
VAL
234
B
LYS
235
n
58
LYS
235
B
PRO
236
n
59
PRO
236
B
ARG
237
n
60
ARG
237
B
PRO
238
n
61
PRO
238
B
TRP
239
n
62
TRP
239
B
TYR
240
n
63
TYR
240
B
GLU
241
n
64
GLU
241
B
VAL
242
n
65
VAL
242
B
GLU
243
n
66
GLU
243
B
LEU
244
n
67
LEU
244
B
ILE
245
n
68
ILE
245
B
VAL
246
n
69
VAL
246
B
SER
247
n
70
SER
247
B
LYS
248
n
71
LYS
248
B
ASP
249
n
72
ASP
249
B
ILE
250
n
73
ILE
250
B
THR
251
n
74
THR
251
B
SER
252
n
75
SER
252
B
GLN
253
n
76
GLN
253
B
GLU
254
n
77
GLU
254
B
GLY
255
n
78
GLY
255
B
TYR
256
n
79
TYR
256
B
PRO
257
n
80
PRO
257
B
VAL
258
n
81
VAL
258
B
LEU
259
n
82
LEU
259
B
LYS
260
n
83
LYS
260
B
SER
261
n
84
SER
261
B
PHE
262
n
85
PHE
262
B
THR
263
n
86
THR
263
B
VAL
264
n
87
VAL
264
B
ILE
265
n
88
ILE
265
B
THR
266
n
89
THR
266
B
ASP
267
n
90
ASP
267
B
ASP
268
n
91
ASP
268
B
GLY
269
n
92
GLY
269
B
TRP
270
n
93
TRP
270
B
GLN
271
n
94
GLN
271
B
PHE
272
n
95
PHE
272
B
GLN
273
n
96
GLN
273
B
CYS
274
n
97
CYS
274
B
LYS
275
n
98
LYS
275
B
THR
276
n
99
THR
276
B
SER
277
n
100
SER
277
B
GLY
278
n
101
GLY
278
B
ASP
279
n
102
ASP
279
B
TYR
280
n
103
TYR
280
B
SER
281
n
104
SER
281
B
LYS
282
n
105
LYS
282
B
ASN
283
n
106
ASN
283
B
PHE
284
n
107
PHE
284
B
ARG
285
n
108
ARG
285
B
SER
286
n
109
SER
286
B
GLU
287
n
110
GLU
287
B
ASN
288
n
111
ASN
288
B
ASP
289
n
112
ASP
289
B
LEU
290
n
113
LEU
290
B
LYS
291
n
114
LYS
291
B
THR
292
n
115
THR
292
B
LEU
293
n
116
LEU
293
B
GLY
294
n
117
GLY
294
B
LYS
295
n
118
LYS
295
B
TRP
296
n
119
TRP
296
B
ILE
297
n
120
ILE
297
B
LYS
298
n
121
LYS
298
B
GLY
299
n
122
GLY
299
B
ARG
300
n
123
ARG
300
B
LEU
301
n
124
LEU
301
B
GLU
302
n
125
GLU
302
B
SER
303
n
126
SER
303
B
HIS
304
n
127
HIS
304
B
GLY
305
n
128
GLY
305
B
CYS
306
n
129
CYS
306
B
LEU
307
n
130
LEU
307
B
GLN
308
n
131
GLN
308
B
ASN
309
n
132
ASN
309
B
ASN
310
n
133
ASN
310
B
GLU
311
n
134
GLU
311
B
LYS
312
n
135
LYS
312
B
ILE
313
n
136
ILE
313
B
THR
314
n
137
THR
314
B
HIS
315
n
138
HIS
315
B
GLU
316
n
139
GLU
316
B
THR
317
n
140
THR
317
B
LEU
318
n
141
LEU
318
B
ARG
319
n
142
ARG
319
B
GLU
320
n
143
GLU
320
B
TYR
321
n
144
TYR
321
B
GLY
322
n
145
GLY
322
B
ASN
323
n
146
ASN
323
B
ASP
324
n
147
ASP
324
B
HIS
325
n
148
HIS
325
B
PHE
326
n
149
PHE
326
B
GLU
327
n
150
GLU
327
B
LEU
328
n
151
LEU
328
B
ARG
329
n
152
ARG
329
B
SER
330
n
153
SER
330
B
THR
331
n
154
THR
331
B
ASP
332
n
155
ASP
332
B
ASN
333
n
156
ASN
333
B
PRO
334
n
157
PRO
334
B
ASP
335
n
158
ASP
335
B
VAL
336
n
159
VAL
336
B
TRP
337
n
160
TRP
337
B
LEU
338
n
161
LEU
338
B
LEU
339
n
162
LEU
339
B
SER
340
n
163
SER
340
B
PHE
341
n
164
PHE
341
B
LYS
342
n
165
LYS
342
B
GLY
343
n
166
GLY
343
B
n
167
344
B
n
168
345
B
n
169
346
B
n
170
347
B
n
171
348
B
n
172
349
B
n
173
350
B
n
174
351
B
n
175
352
B
n
176
353
B
n
177
354
B
n
178
355
B
n
1
1
C
DC
2
n
2
DC
2
C
DC
3
n
3
DC
3
C
DT
4
n
4
DT
4
C
DA
5
n
5
DA
5
C
DA
6
n
6
DA
6
C
DG
7
n
7
DG
7
C
DC
8
n
8
DC
8
C
DG
9
n
9
DG
9
C
DG
10
n
10
DG
10
C
DC
11
n
11
DC
11
C
DA
12
n
12
DA
12
C
DA
13
n
13
DA
13
C
DT
14
n
14
DT
14
C
DC
15
n
15
DC
15
C
DC
16
n
16
DC
16
C
DG
17
n
1
DG
17
D
DG
18
n
2
DG
18
D
DG
19
n
3
DG
19
D
DA
20
n
4
DA
20
D
DT
21
n
5
DT
21
D
DT
22
n
6
DT
22
D
DG
23
n
7
DG
23
D
DC
24
n
8
DC
24
D
DC
25
n
9
DC
25
D
DG
26
n
10
DG
26
D
DC
27
n
11
DC
27
D
DT
28
n
12
DT
28
D
DT
29
n
13
DT
29
D
DA
30
n
14
DA
30
D
DG
31
n
15
DG
31
D
n
16
32
D
n
1
1
E
DC
2
n
2
DC
2
E
DC
3
n
3
DC
3
E
DT
4
n
4
DT
4
E
DA
5
n
5
DA
5
E
DA
6
n
6
DA
6
E
DG
7
n
7
DG
7
E
DC
8
n
8
DC
8
E
DG
9
n
9
DG
9
E
DG
10
n
10
DG
10
E
DC
11
n
11
DC
11
E
DA
12
n
12
DA
12
E
DA
13
n
13
DA
13
E
DT
14
n
14
DT
14
E
DC
15
n
15
DC
15
E
DC
16
n
16
DC
16
E
DG
17
n
1
DG
17
F
DG
18
n
2
DG
18
F
DG
19
n
3
DG
19
F
DA
20
n
4
DA
20
F
DT
21
n
5
DT
21
F
DT
22
n
6
DT
22
F
DG
23
n
7
DG
23
F
DC
24
n
8
DC
24
F
DC
25
n
9
DC
25
F
DG
26
n
10
DG
26
F
DC
27
n
11
DC
27
F
DT
28
n
12
DT
28
F
DT
29
n
13
DT
29
F
DA
30
n
14
DA
30
F
DG
31
n
15
DG
31
F
n
16
32
F
author_and_software_defined_assembly
PISA
3
trimeric
author_and_software_defined_assembly
PISA
3
trimeric
3750
-21
12210
3750
-22
11640
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
188
A
N
GLN
11
A
O
GLN
271
A
O
GLN
94
A
O
TRP
270
A
O
TRP
93
A
N
THR
266
A
N
THR
89
A
N
THR
263
A
N
THR
86
A
O
TRP
337
A
O
TRP
160
A
O
LEU
338
A
O
LEU
161
A
N
ARG
329
A
N
ARG
152
A
O
PHE
326
A
O
PHE
149
A
N
ILE
209
A
N
ILE
32
A
N
GLN
188
A
N
GLN
11
A
O
GLN
271
A
O
GLN
94
A
N
LYS
275
A
N
LYS
98
A
O
ARG
285
A
O
ARG
108
A
O
PHE
284
A
O
PHE
107
A
N
LEU
244
A
N
LEU
67
A
N
ARG
227
A
N
ARG
50
A
O
LYS
235
A
O
LYS
58
B
N
GLN
188
B
N
GLN
11
B
O
GLN
271
B
O
GLN
94
B
O
CYS
274
B
O
CYS
97
B
N
PHE
262
B
N
PHE
85
B
N
THR
263
B
N
THR
86
B
O
TRP
337
B
O
TRP
160
B
O
SER
340
B
O
SER
163
B
N
GLU
327
B
N
GLU
150
B
O
PHE
326
B
O
PHE
149
B
N
ILE
209
B
N
ILE
32
B
N
GLN
188
B
N
GLN
11
B
O
GLN
271
B
O
GLN
94
B
N
LYS
275
B
N
LYS
98
B
O
ARG
285
B
O
ARG
108
B
O
PHE
284
B
O
PHE
107
B
N
LEU
244
B
N
LEU
67
B
N
ARG
227
B
N
ARG
50
B
O
LYS
235
B
O
LYS
58
1
A
HOH
455
G
HOH
1
A
CG
ARG
196
A
CG
ARG
19
1
Y
1
A
CD
ARG
196
A
CD
ARG
19
1
Y
1
A
NE
ARG
196
A
NE
ARG
19
1
Y
1
A
CZ
ARG
196
A
CZ
ARG
19
1
Y
1
A
NH1
ARG
196
A
NH1
ARG
19
1
Y
1
A
NH2
ARG
196
A
NH2
ARG
19
1
Y
1
A
CG
LYS
230
A
CG
LYS
53
1
Y
1
A
CD
LYS
230
A
CD
LYS
53
1
Y
1
A
CE
LYS
230
A
CE
LYS
53
1
Y
1
A
NZ
LYS
230
A
NZ
LYS
53
1
Y
1
A
CG
LYS
248
A
CG
LYS
71
1
Y
1
A
CD
LYS
248
A
CD
LYS
71
1
Y
1
A
CE
LYS
248
A
CE
LYS
71
1
Y
1
A
NZ
LYS
248
A
NZ
LYS
71
1
Y
1
A
CG
LYS
344
A
CG
LYS
167
1
Y
1
A
CD
LYS
344
A
CD
LYS
167
1
Y
1
A
CE
LYS
344
A
CE
LYS
167
1
Y
1
A
NZ
LYS
344
A
NZ
LYS
167
1
Y
1
B
CG
LEU
185
B
CG
LEU
8
1
Y
1
B
CD1
LEU
185
B
CD1
LEU
8
1
Y
1
B
CD2
LEU
185
B
CD2
LEU
8
1
Y
1
B
CG
GLU
193
B
CG
GLU
16
1
Y
1
B
CD
GLU
193
B
CD
GLU
16
1
Y
1
B
OE1
GLU
193
B
OE1
GLU
16
1
Y
1
B
OE2
GLU
193
B
OE2
GLU
16
1
Y
1
B
CG
GLN
194
B
CG
GLN
17
1
Y
1
B
CD
GLN
194
B
CD
GLN
17
1
Y
1
B
OE1
GLN
194
B
OE1
GLN
17
1
Y
1
B
NE2
GLN
194
B
NE2
GLN
17
1
Y
1
B
CG1
ILE
195
B
CG1
ILE
18
1
Y
1
B
CG2
ILE
195
B
CG2
ILE
18
1
Y
1
B
CD1
ILE
195
B
CD1
ILE
18
1
Y
1
B
CG
ARG
196
B
CG
ARG
19
1
Y
1
B
CD
ARG
196
B
CD
ARG
19
1
Y
1
B
NE
ARG
196
B
NE
ARG
19
1
Y
1
B
CZ
ARG
196
B
CZ
ARG
19
1
Y
1
B
NH1
ARG
196
B
NH1
ARG
19
1
Y
1
B
NH2
ARG
196
B
NH2
ARG
19
1
Y
1
B
CG
GLN
197
B
CG
GLN
20
1
Y
1
B
CD
GLN
197
B
CD
GLN
20
1
Y
1
B
OE1
GLN
197
B
OE1
GLN
20
1
Y
1
B
NE2
GLN
197
B
NE2
GLN
20
1
Y
1
B
CG
LEU
198
B
CG
LEU
21
1
Y
1
B
CD1
LEU
198
B
CD1
LEU
21
1
Y
1
B
CD2
LEU
198
B
CD2
LEU
21
1
Y
1
B
CG
PHE
199
B
CG
PHE
22
1
Y
1
B
CD1
PHE
199
B
CD1
PHE
22
1
Y
1
B
CD2
PHE
199
B
CD2
PHE
22
1
Y
1
B
CE1
PHE
199
B
CE1
PHE
22
1
Y
1
B
CE2
PHE
199
B
CE2
PHE
22
1
Y
1
B
CZ
PHE
199
B
CZ
PHE
22
1
Y
1
B
CG
GLN
201
B
CG
GLN
24
1
Y
1
B
CD
GLN
201
B
CD
GLN
24
1
Y
1
B
OE1
GLN
201
B
OE1
GLN
24
1
Y
1
B
NE2
GLN
201
B
NE2
GLN
24
1
Y
1
B
OG1
THR
202
B
OG1
THR
25
1
Y
1
B
CG2
THR
202
B
CG2
THR
25
1
Y
1
B
CD
GLU
204
B
CD
GLU
27
1
Y
1
B
OE1
GLU
204
B
OE1
GLU
27
1
Y
1
B
OE2
GLU
204
B
OE2
GLU
27
1
Y
1
B
CG
HIS
206
B
CG
HIS
29
1
Y
1
B
ND1
HIS
206
B
ND1
HIS
29
1
Y
1
B
CD2
HIS
206
B
CD2
HIS
29
1
Y
1
B
CE1
HIS
206
B
CE1
HIS
29
1
Y
1
B
NE2
HIS
206
B
NE2
HIS
29
1
Y
1
B
CG
GLU
225
B
CG
GLU
48
1
Y
1
B
CD
GLU
225
B
CD
GLU
48
1
Y
1
B
OE1
GLU
225
B
OE1
GLU
48
1
Y
1
B
OE2
GLU
225
B
OE2
GLU
48
1
Y
1
B
CG
ARG
228
B
CG
ARG
51
1
Y
1
B
CD
ARG
228
B
CD
ARG
51
1
Y
1
B
NE
ARG
228
B
NE
ARG
51
1
Y
1
B
CZ
ARG
228
B
CZ
ARG
51
1
Y
1
B
NH1
ARG
228
B
NH1
ARG
51
1
Y
1
B
NH2
ARG
228
B
NH2
ARG
51
1
Y
1
B
CG
ARG
231
B
CG
ARG
54
1
Y
1
B
CD
ARG
231
B
CD
ARG
54
1
Y
1
B
NE
ARG
231
B
NE
ARG
54
1
Y
1
B
CZ
ARG
231
B
CZ
ARG
54
1
Y
1
B
NH1
ARG
231
B
NH1
ARG
54
1
Y
1
B
NH2
ARG
231
B
NH2
ARG
54
1
Y
1
B
CG
PHE
233
B
CG
PHE
56
1
Y
1
B
CD1
PHE
233
B
CD1
PHE
56
1
Y
1
B
CD2
PHE
233
B
CD2
PHE
56
1
Y
1
B
CE1
PHE
233
B
CE1
PHE
56
1
Y
1
B
CE2
PHE
233
B
CE2
PHE
56
1
Y
1
B
CZ
PHE
233
B
CZ
PHE
56
1
Y
1
B
CG
LYS
248
B
CG
LYS
71
1
Y
1
B
CD
LYS
248
B
CD
LYS
71
1
Y
1
B
CE
LYS
248
B
CE
LYS
71
1
Y
1
B
NZ
LYS
248
B
NZ
LYS
71
1
Y
1
B
CG
GLU
254
B
CG
GLU
77
1
Y
1
B
CD
GLU
254
B
CD
GLU
77
1
Y
1
B
OE1
GLU
254
B
OE1
GLU
77
1
Y
1
B
OE2
GLU
254
B
OE2
GLU
77
1
Y
1
B
CG
GLN
308
B
CG
GLN
131
1
Y
1
B
CD
GLN
308
B
CD
GLN
131
1
Y
1
B
OE1
GLN
308
B
OE1
GLN
131
1
Y
1
B
NE2
GLN
308
B
NE2
GLN
131
1
Y
1
B
CG
ASN
309
B
CG
ASN
132
1
Y
1
B
OD1
ASN
309
B
OD1
ASN
132
1
Y
1
B
ND2
ASN
309
B
ND2
ASN
132
1
Y
1
B
CG
GLU
311
B
CG
GLU
134
1
Y
1
B
CD
GLU
311
B
CD
GLU
134
1
Y
1
B
OE1
GLU
311
B
OE1
GLU
134
1
Y
1
B
OE2
GLU
311
B
OE2
GLU
134
1
Y
1
B
CG
LYS
312
B
CG
LYS
135
1
Y
1
B
CD
LYS
312
B
CD
LYS
135
1
Y
1
B
CE
LYS
312
B
CE
LYS
135
1
Y
1
B
NZ
LYS
312
B
NZ
LYS
135
1
Y
1
B
CG1
ILE
313
B
CG1
ILE
136
1
Y
1
B
CG2
ILE
313
B
CG2
ILE
136
1
Y
1
B
CD1
ILE
313
B
CD1
ILE
136
1
Y
1
B
CG
HIS
315
B
CG
HIS
138
1
Y
1
B
ND1
HIS
315
B
ND1
HIS
138
1
Y
1
B
CD2
HIS
315
B
CD2
HIS
138
1
Y
1
B
CE1
HIS
315
B
CE1
HIS
138
1
Y
1
B
NE2
HIS
315
B
NE2
HIS
138
1
Y
1
B
CG
GLU
316
B
CG
GLU
139
1
Y
1
B
CD
GLU
316
B
CD
GLU
139
1
Y
1
B
OE1
GLU
316
B
OE1
GLU
139
1
Y
1
B
OE2
GLU
316
B
OE2
GLU
139
1
Y
1
B
CG
LEU
318
B
CG
LEU
141
1
Y
1
B
CD1
LEU
318
B
CD1
LEU
141
1
Y
1
B
CD2
LEU
318
B
CD2
LEU
141
1
Y
1
B
CG
ARG
319
B
CG
ARG
142
1
Y
1
B
CD
ARG
319
B
CD
ARG
142
1
Y
1
B
NE
ARG
319
B
NE
ARG
142
1
Y
1
B
CZ
ARG
319
B
CZ
ARG
142
1
Y
1
B
NH1
ARG
319
B
NH1
ARG
142
1
Y
1
B
NH2
ARG
319
B
NH2
ARG
142
1
Y
1
B
CG
GLU
320
B
CG
GLU
143
1
Y
1
B
CD
GLU
320
B
CD
GLU
143
1
Y
1
B
OE1
GLU
320
B
OE1
GLU
143
1
Y
1
B
OE2
GLU
320
B
OE2
GLU
143
1
Y
1
B
CG
ASP
332
B
CG
ASP
155
1
Y
1
B
OD1
ASP
332
B
OD1
ASP
155
1
Y
1
B
OD2
ASP
332
B
OD2
ASP
155
1
Y
1
B
CG
LYS
342
B
CG
LYS
165
1
Y
1
B
CD
LYS
342
B
CD
LYS
165
1
Y
1
B
CE
LYS
342
B
CE
LYS
165
1
Y
1
B
NZ
LYS
342
B
NZ
LYS
165
1
Y
1
A
MET
178
A
MET
1
1
Y
1
A
SER
179
A
SER
2
1
Y
1
A
HIS
180
A
HIS
3
1
Y
1
A
LEU
181
A
LEU
4
1
Y
1
A
GLU
182
A
GLU
5
1
Y
1
A
ASN
183
A
ASN
6
1
Y
1
A
CYS
184
A
CYS
7
1
Y
1
A
ASN
345
A
ASN
168
1
Y
1
A
SER
346
A
SER
169
1
Y
1
A
GLY
347
A
GLY
170
1
Y
1
A
GLY
348
A
GLY
171
1
Y
1
A
HIS
349
A
HIS
172
1
Y
1
A
HIS
350
A
HIS
173
1
Y
1
A
HIS
351
A
HIS
174
1
Y
1
A
HIS
352
A
HIS
175
1
Y
1
A
HIS
353
A
HIS
176
1
Y
1
A
HIS
354
A
HIS
177
1
Y
1
A
GLY
355
A
GLY
178
1
Y
1
B
MET
178
B
MET
1
1
Y
1
B
SER
179
B
SER
2
1
Y
1
B
HIS
180
B
HIS
3
1
Y
1
B
LEU
181
B
LEU
4
1
Y
1
B
GLU
182
B
GLU
5
1
Y
1
B
ASN
183
B
ASN
6
1
Y
1
B
CYS
184
B
CYS
7
1
Y
1
B
LYS
344
B
LYS
167
1
Y
1
B
ASN
345
B
ASN
168
1
Y
1
B
SER
346
B
SER
169
1
Y
1
B
GLY
347
B
GLY
170
1
Y
1
B
GLY
348
B
GLY
171
1
Y
1
B
HIS
349
B
HIS
172
1
Y
1
B
HIS
350
B
HIS
173
1
Y
1
B
HIS
351
B
HIS
174
1
Y
1
B
HIS
352
B
HIS
175
1
Y
1
B
HIS
353
B
HIS
176
1
Y
1
B
HIS
354
B
HIS
177
1
Y
1
B
GLY
355
B
GLY
178
1
Y
1
C
DC
1
C
DC
1
1
Y
1
D
DG
32
D
DG
16
1
Y
1
E
DC
1
E
DC
1
1
Y
1
F
DG
32
F
DG
16
1
Y
1
A
A
OH
O
TYR
HOH
256
420
2.14
1
2.73
0.30
108.30
111.03
C
C
C
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
4.07
0.30
108.30
112.37
C
C
C
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
-5.14
0.80
102.40
97.26
D
D
D
C3'
C2'
C1'
DT
DT
DT
28
28
28
N
1
1.91
0.30
108.30
110.21
D
D
D
O4'
C1'
N1
DT
DT
DT
29
29
29
N
1
2.31
0.30
108.30
110.61
E
E
E
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
-5.87
0.80
102.40
96.53
E
E
E
C3'
C2'
C1'
DG
DG
DG
10
10
10
N
1
3.82
0.30
108.30
112.12
E
E
E
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
D
D
O3'
C3'
DT
DT
28
28
-0.044
0.006
1.419
1.375
N
1
A
ASN
218
61.23
-123.51
1
A
TYR
280
59.83
14.05
1
A
ASN
288
83.31
-12.94
1
A
PHE
341
-159.30
67.79
1
B
ASN
218
61.83
-123.69
1
B
ASN
220
-108.45
42.88
1
B
ASN
288
79.46
-8.72
120.360
36.2400
5.230
0.2502
0.2138
0.2175
0.2175
2.7000
48.3370
3242
17327
17265
10.2300
99.9600
0.3300
RANDOM
1
1.670
MOLECULAR REPLACEMENT
24.0900
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
2.7000
48.3370
86
3793
0
1224
2483
0.006
3923
0.794
5566
0.041
606
0.005
512
24.050
1496
0.2534
0.2495
2.7403
158
1233
1391
23
100.0000
0.3048
0.2624
2.7831
133
1251
1384
23
100.0000
0.3466
0.2627
2.8288
164
1193
1357
23
100.0000
0.3205
0.2488
2.8775
140
1226
1366
23
100.0000
0.2378
0.2644
2.9298
158
1243
1401
23
100.0000
0.2779
0.2493
2.9862
126
1255
1381
23
100.0000
0.3274
0.2604
3.0471
130
1261
1391
23
100.0000
0.3272
0.2492
3.1134
160
1185
1345
23
100.0000
0.2788
0.2356
3.1858
129
1284
1413
23
100.0000
0.2130
0.2294
3.2654
125
1230
1355
23
100.0000
0.2412
0.2015
3.3537
139
1223
1362
23
100.0000
0.2586
0.2140
3.4524
150
1234
1384
23
100.0000
0.2186
0.2010
3.5638
135
1255
1390
23
100.0000
0.3168
0.2081
3.6911
139
1233
1372
23
100.0000
0.2660
0.2015
3.8388
132
1264
1396
23
100.0000
0.2040
0.2002
4.0135
122
1267
1389
23
100.0000
0.2364
0.1840
4.2249
159
1197
1356
23
100.0000
0.2131
0.1780
4.4895
130
1253
1383
23
100.0000
0.2107
0.1932
4.8358
144
1223
1367
23
100.0000
0.2210
0.1863
5.3219
152
1232
1384
23
100.0000
0.2344
0.2063
6.0907
148
1225
1373
23
100.0000
0.2501
0.2460
7.6687
130
1258
1388
23
100.0000
0.2262
0.1946
48.3451
139
1230
1369
23
99.0000
33.450
2.700
152.437
4RD5
17327
17327
0
0
0.097
1
32.000
19.100
100.000
0.345
2.700
2.850
1.900
45994
2479
0.345
1
18.600
100.000
0.266
2.850
3.020
2.400
47064
2316
0.266
1
20.300
100.000
0.174
3.020
3.230
3.600
44294
2200
0.174
1
20.100
100.000
0.112
3.230
3.490
5.600
40176
2071
0.112
1
19.400
100.000
0.090
3.490
3.820
7.000
36045
1911
0.090
1
18.900
100.000
0.074
3.820
4.270
8.500
34673
1737
0.074
1
20.000
100.000
0.065
4.270
4.930
9.400
29691
1568
0.065
1
18.900
100.000
0.060
4.930
6.040
9.800
23521
1322
0.060
1
17.800
100.000
0.059
6.040
8.540
8.500
19446
1067
0.059
1
18.200
100.000
0.056
8.540
152.437
6.700
9733
656
0.056
1
14.800
99.700
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2011/05/18
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.20
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
6.0
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.3_1479
data extraction
PDB
deposit@deposit.rcsb.org
July. 29, 2014
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.15
data collection
MxCuBE
data reduction
XDS
Crystal structure of R.NgoAVII restriction endonuclease B3 domain with cognate DNA
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
ALA
191
A
ALA
14
HELX_P
A
GLN
201
A
GLN
24
1
1
11
A
SER
217
A
SER
40
HELX_P
A
GLY
224
A
GLY
47
5
2
8
A
SER
247
A
SER
70
HELX_P
A
SER
252
A
SER
75
1
3
6
A
GLY
278
A
GLY
101
HELX_P
A
SER
281
A
SER
104
5
4
4
A
LEU
290
A
LEU
113
HELX_P
A
HIS
304
A
HIS
127
1
5
15
A
THR
314
A
THR
137
HELX_P
A
GLY
322
A
GLY
145
1
6
9
B
ALA
191
B
ALA
14
HELX_P
B
GLN
201
B
GLN
24
1
7
11
B
SER
217
B
SER
40
HELX_P
B
GLY
224
B
GLY
47
5
8
8
B
SER
247
B
SER
70
HELX_P
B
SER
252
B
SER
75
1
9
6
B
GLY
278
B
GLY
101
HELX_P
B
SER
281
B
SER
104
5
10
4
B
LEU
290
B
LEU
113
HELX_P
B
HIS
304
B
HIS
127
1
11
15
B
THR
314
B
THR
137
HELX_P
B
GLY
322
B
GLY
145
1
12
9
hydrog
WATSON-CRICK
C
DC
3
C
N3
DC
3
1_555
D
DG
31
D
N1
DG
15
1_555
hydrog
WATSON-CRICK
C
DC
3
C
N4
DC
3
1_555
D
DG
31
D
O6
DG
15
1_555
hydrog
WATSON-CRICK
C
DC
3
C
O2
DC
3
1_555
D
DG
31
D
N2
DG
15
1_555
hydrog
DT-DA PAIR
C
DT
4
C
N3
DT
4
1_555
D
DA
30
D
N1
DA
14
1_555
hydrog
WATSON-CRICK
C
DA
5
C
N1
DA
5
1_555
D
DT
29
D
N3
DT
13
1_555
hydrog
WATSON-CRICK
C
DA
5
C
N6
DA
5
1_555
D
DT
29
D
O4
DT
13
1_555
hydrog
WATSON-CRICK
C
DA
6
C
N1
DA
6
1_555
D
DT
28
D
N3
DT
12
1_555
hydrog
WATSON-CRICK
C
DA
6
C
N6
DA
6
1_555
D
DT
28
D
O4
DT
12
1_555
hydrog
WATSON-CRICK
C
DG
7
C
N1
DG
7
1_555
D
DC
27
D
N3
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
7
C
N2
DG
7
1_555
D
DC
27
D
O2
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
7
C
O6
DG
7
1_555
D
DC
27
D
N4
DC
11
1_555
hydrog
WATSON-CRICK
C
DC
8
C
N3
DC
8
1_555
D
DG
26
D
N1
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
8
C
N4
DC
8
1_555
D
DG
26
D
O6
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
8
C
O2
DC
8
1_555
D
DG
26
D
N2
DG
10
1_555
hydrog
WATSON-CRICK
C
DG
9
C
N1
DG
9
1_555
D
DC
25
D
N3
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
9
C
N2
DG
9
1_555
D
DC
25
D
O2
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
9
C
O6
DG
9
1_555
D
DC
25
D
N4
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
10
C
N1
DG
10
1_555
D
DC
24
D
N3
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
10
C
N2
DG
10
1_555
D
DC
24
D
O2
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
10
C
O6
DG
10
1_555
D
DC
24
D
N4
DC
8
1_555
hydrog
WATSON-CRICK
C
DC
11
C
N3
DC
11
1_555
D
DG
23
D
N1
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
11
C
N4
DC
11
1_555
D
DG
23
D
O6
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
11
C
O2
DC
11
1_555
D
DG
23
D
N2
DG
7
1_555
hydrog
WATSON-CRICK
C
DA
12
C
N1
DA
12
1_555
D
DT
22
D
N3
DT
6
1_555
hydrog
WATSON-CRICK
C
DA
12
C
N6
DA
12
1_555
D
DT
22
D
O4
DT
6
1_555
hydrog
WATSON-CRICK
C
DA
13
C
N1
DA
13
1_555
D
DT
21
D
N3
DT
5
1_555
hydrog
WATSON-CRICK
C
DA
13
C
N6
DA
13
1_555
D
DT
21
D
O4
DT
5
1_555
hydrog
WATSON-CRICK
C
DT
14
C
N3
DT
14
1_555
D
DA
20
D
N1
DA
4
1_555
hydrog
WATSON-CRICK
C
DT
14
C
O4
DT
14
1_555
D
DA
20
D
N6
DA
4
1_555
hydrog
WATSON-CRICK
C
DC
15
C
N3
DC
15
1_555
D
DG
19
D
N1
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
15
C
N4
DC
15
1_555
D
DG
19
D
O6
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
15
C
O2
DC
15
1_555
D
DG
19
D
N2
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
16
C
N3
DC
16
1_555
D
DG
18
D
N1
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
16
C
N4
DC
16
1_555
D
DG
18
D
O6
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
16
C
O2
DC
16
1_555
D
DG
18
D
N2
DG
2
1_555
hydrog
WATSON-CRICK
E
DC
3
E
N3
DC
3
1_555
F
DG
31
F
N1
DG
15
1_555
hydrog
WATSON-CRICK
E
DC
3
E
N4
DC
3
1_555
F
DG
31
F
O6
DG
15
1_555
hydrog
WATSON-CRICK
E
DC
3
E
O2
DC
3
1_555
F
DG
31
F
N2
DG
15
1_555
hydrog
WATSON-CRICK
E
DT
4
E
N3
DT
4
1_555
F
DA
30
F
N1
DA
14
1_555
hydrog
WATSON-CRICK
E
DT
4
E
O4
DT
4
1_555
F
DA
30
F
N6
DA
14
1_555
hydrog
WATSON-CRICK
E
DA
5
E
N1
DA
5
1_555
F
DT
29
F
N3
DT
13
1_555
hydrog
WATSON-CRICK
E
DA
5
E
N6
DA
5
1_555
F
DT
29
F
O4
DT
13
1_555
hydrog
WATSON-CRICK
E
DA
6
E
N1
DA
6
1_555
F
DT
28
F
N3
DT
12
1_555
hydrog
WATSON-CRICK
E
DA
6
E
N6
DA
6
1_555
F
DT
28
F
O4
DT
12
1_555
hydrog
WATSON-CRICK
E
DG
7
E
N1
DG
7
1_555
F
DC
27
F
N3
DC
11
1_555
hydrog
WATSON-CRICK
E
DG
7
E
N2
DG
7
1_555
F
DC
27
F
O2
DC
11
1_555
hydrog
WATSON-CRICK
E
DG
7
E
O6
DG
7
1_555
F
DC
27
F
N4
DC
11
1_555
hydrog
WATSON-CRICK
E
DC
8
E
N3
DC
8
1_555
F
DG
26
F
N1
DG
10
1_555
hydrog
WATSON-CRICK
E
DC
8
E
N4
DC
8
1_555
F
DG
26
F
O6
DG
10
1_555
hydrog
WATSON-CRICK
E
DC
8
E
O2
DC
8
1_555
F
DG
26
F
N2
DG
10
1_555
hydrog
WATSON-CRICK
E
DG
9
E
N1
DG
9
1_555
F
DC
25
F
N3
DC
9
1_555
hydrog
WATSON-CRICK
E
DG
9
E
N2
DG
9
1_555
F
DC
25
F
O2
DC
9
1_555
hydrog
WATSON-CRICK
E
DG
9
E
O6
DG
9
1_555
F
DC
25
F
N4
DC
9
1_555
hydrog
WATSON-CRICK
E
DG
10
E
N1
DG
10
1_555
F
DC
24
F
N3
DC
8
1_555
hydrog
WATSON-CRICK
E
DG
10
E
N2
DG
10
1_555
F
DC
24
F
O2
DC
8
1_555
hydrog
WATSON-CRICK
E
DG
10
E
O6
DG
10
1_555
F
DC
24
F
N4
DC
8
1_555
hydrog
WATSON-CRICK
E
DC
11
E
N3
DC
11
1_555
F
DG
23
F
N1
DG
7
1_555
hydrog
WATSON-CRICK
E
DC
11
E
N4
DC
11
1_555
F
DG
23
F
O6
DG
7
1_555
hydrog
WATSON-CRICK
E
DC
11
E
O2
DC
11
1_555
F
DG
23
F
N2
DG
7
1_555
hydrog
WATSON-CRICK
E
DA
12
E
N1
DA
12
1_555
F
DT
22
F
N3
DT
6
1_555
hydrog
WATSON-CRICK
E
DA
12
E
N6
DA
12
1_555
F
DT
22
F
O4
DT
6
1_555
hydrog
WATSON-CRICK
E
DA
13
E
N1
DA
13
1_555
F
DT
21
F
N3
DT
5
1_555
hydrog
WATSON-CRICK
E
DA
13
E
N6
DA
13
1_555
F
DT
21
F
O4
DT
5
1_555
hydrog
WATSON-CRICK
E
DT
14
E
N3
DT
14
1_555
F
DA
20
F
N1
DA
4
1_555
hydrog
WATSON-CRICK
E
DT
14
E
O4
DT
14
1_555
F
DA
20
F
N6
DA
4
1_555
hydrog
WATSON-CRICK
E
DC
15
E
N3
DC
15
1_555
F
DG
19
F
N1
DG
3
1_555
hydrog
WATSON-CRICK
E
DC
15
E
N4
DC
15
1_555
F
DG
19
F
O6
DG
3
1_555
hydrog
WATSON-CRICK
E
DC
15
E
O2
DC
15
1_555
F
DG
19
F
N2
DG
3
1_555
hydrog
DC-DG PAIR
E
DC
16
E
O2
DC
16
1_555
F
DG
18
F
N1
DG
2
1_555
HYDROLASE/DNA
restriction endonuclease, B3 DNA binding domain, protein-DNA complex, HYDROLASE-DNA complex
Q5F9M9_NEIG1
UNP
1
179
Q5F9M9
SHLENCLGVQKIAPEQIRQLFAQTSEYHFSIPAKTEEKSNLNVFFGEGRRDKRGFVKPRPWYEVELIVSKDITSQEGYPV
LKSFTVITDDGWQFQCKTSGDYSKNFRSENDLKTLGKWIKGRLESHGCLQNNEKITHETLREYGNDHFELRSTDNPDVWL
LSFKGKN
4RD5
PDB
2
4RD5
4RD5
PDB
3
4RD5
179
345
4RD5
179
345
Q5F9M9
A
1
2
168
179
345
4RD5
179
345
Q5F9M9
B
1
2
168
1
16
4RD5
1
16
4RD5
C
2
1
16
1
16
4RD5
1
16
4RD5
E
2
1
16
17
32
4RD5
17
32
4RD5
D
3
1
16
17
32
4RD5
17
32
4RD5
F
3
1
16
1
initiating methionine
MET
178
4RD5
A
Q5F9M9
UNP
1
1
expression tag
SER
346
4RD5
A
Q5F9M9
UNP
169
1
expression tag
GLY
347
4RD5
A
Q5F9M9
UNP
170
1
expression tag
GLY
348
4RD5
A
Q5F9M9
UNP
171
1
expression tag
HIS
349
4RD5
A
Q5F9M9
UNP
172
1
expression tag
HIS
350
4RD5
A
Q5F9M9
UNP
173
1
expression tag
HIS
351
4RD5
A
Q5F9M9
UNP
174
1
expression tag
HIS
352
4RD5
A
Q5F9M9
UNP
175
1
expression tag
HIS
353
4RD5
A
Q5F9M9
UNP
176
1
expression tag
HIS
354
4RD5
A
Q5F9M9
UNP
177
1
expression tag
GLY
355
4RD5
A
Q5F9M9
UNP
178
2
initiating methionine
MET
178
4RD5
B
Q5F9M9
UNP
1
2
expression tag
SER
346
4RD5
B
Q5F9M9
UNP
169
2
expression tag
GLY
347
4RD5
B
Q5F9M9
UNP
170
2
expression tag
GLY
348
4RD5
B
Q5F9M9
UNP
171
2
expression tag
HIS
349
4RD5
B
Q5F9M9
UNP
172
2
expression tag
HIS
350
4RD5
B
Q5F9M9
UNP
173
2
expression tag
HIS
351
4RD5
B
Q5F9M9
UNP
174
2
expression tag
HIS
352
4RD5
B
Q5F9M9
UNP
175
2
expression tag
HIS
353
4RD5
B
Q5F9M9
UNP
176
2
expression tag
HIS
354
4RD5
B
Q5F9M9
UNP
177
2
expression tag
GLY
355
4RD5
B
Q5F9M9
UNP
178
6
4
2
6
4
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
188
A
GLN
11
A
LYS
189
A
LYS
12
A
TRP
270
A
TRP
93
A
SER
277
A
SER
100
A
SER
261
A
SER
84
A
THR
266
A
THR
89
A
VAL
336
A
VAL
159
A
SER
340
A
SER
163
A
HIS
325
A
HIS
148
A
SER
330
A
SER
153
A
HIS
206
A
HIS
29
A
PRO
210
A
PRO
33
A
GLN
188
A
GLN
11
A
LYS
189
A
LYS
12
A
TRP
270
A
TRP
93
A
SER
277
A
SER
100
A
ASN
283
A
ASN
106
A
SER
286
A
SER
109
A
LEU
244
A
LEU
67
A
ILE
245
A
ILE
68
A
ARG
227
A
ARG
50
A
ARG
228
A
ARG
51
A
VAL
234
A
VAL
57
A
LYS
235
A
LYS
58
B
GLN
188
B
GLN
11
B
LYS
189
B
LYS
12
B
TRP
270
B
TRP
93
B
SER
277
B
SER
100
B
SER
261
B
SER
84
B
THR
266
B
THR
89
B
VAL
336
B
VAL
159
B
SER
340
B
SER
163
B
HIS
325
B
HIS
148
B
SER
330
B
SER
153
B
HIS
206
B
HIS
29
B
PRO
210
B
PRO
33
B
GLN
188
B
GLN
11
B
LYS
189
B
LYS
12
B
TRP
270
B
TRP
93
B
SER
277
B
SER
100
B
ASN
283
B
ASN
106
B
SER
286
B
SER
109
B
LEU
244
B
LEU
67
B
ILE
245
B
ILE
68
B
ARG
227
B
ARG
50
B
ARG
228
B
ARG
51
B
VAL
234
B
VAL
57
B
LYS
235
B
LYS
58
92
P 41 21 2