0.019992
0.000000
0.005195
0.000000
0.018142
0.000000
0.000000
0.000000
0.012020
0.000000
0.000000
0.000000
Hiromoto, T.
Honjo, E.
Tamada, T.
Kuroki, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
104.57
90.00
50.021
55.121
85.958
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C15 H11 O7 1
303.244
3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)chromenium
Delphinidin
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
Y
88
N
O
Y
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
Y
93
N
C
N
94
N
O
N
95
N
O
Y
96
N
C
Y
97
N
C
Y
98
N
C
Y
99
N
C
N
100
N
O
Y
101
N
C
Y
102
N
C
N
103
N
O
Y
104
N
C
Y
105
N
C
Y
106
N
C
Y
107
N
C
N
108
N
O
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
N
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
C
N
171
N
O
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
Y
189
N
C
Y
190
N
N
Y
191
N
C
Y
192
N
C
Y
193
N
N
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
S
C
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
N
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
S
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
C
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
O
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
R
C
N
356
N
O
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
N
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
N
406
N
O
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
N
424
N
C
N
425
N
C
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
Y
85
N
doub
Y
86
N
sing
Y
87
N
sing
Y
88
N
doub
N
89
N
sing
Y
90
N
doub
Y
91
N
sing
N
92
N
sing
Y
93
N
doub
Y
94
N
sing
Y
95
N
doub
Y
96
N
sing
Y
97
N
sing
N
98
N
sing
Y
99
N
sing
Y
100
N
doub
N
101
N
sing
Y
102
N
doub
Y
103
N
sing
Y
104
N
doub
Y
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
Y
188
N
sing
Y
189
N
doub
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
N
193
N
sing
Y
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
US
Protein Sci.
PRCIEI
0795
0961-8368
24
395
407
10.1002/pro.2630
25556637
Structural basis for acceptor-substrate recognition of UDP-glucose: anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea
2015
10.2210/pdb4rem/pdb
pdb_00004rem
100
1
CCD
2008-11-12
ADSC QUANTUM 4r
Triangular Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.978
1.0
BL-6A
Photon Factory
0.978
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
48777.246
UDP-glucose:anthocyanidin 3-O-glucosyltransferase
2.4.1.115
1
man
polymer
303.244
3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)chromenium
1
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
18.015
water
127
nat
water
no
no
MKNKQHVAIFPFPFGSHLPPLLNLVLKLAHIAPNTSFSFIGTHSSNAFLFTKRHIPNNIRVFTISDGIPEGHVPANNPIE
KLDLFLSTGPDNLRKGIELAVAETKQSVTCIIADAFVTSSLLVAQTLNVPWIAFWPNVSCSLSLYFNIDLIRDKCSKDAK
NATLDFLPGLSKLRVEDVPQDMLDVGEKETLFSRTLNSLGVVLPQAKAVVVNFFAELDPPLFVKYMRSKLQSLLYVVPLP
CPQLLLPEIDSNGCLSWLDSKSSRSVAYVCFGTVVSPPPQEVVAVAEALEESGFPFVWALKESLLSILPKGFVERTSTRG
KVVSWVPQSHVLSHGSVGVFVTHCGANSVMESVSNGVPMICRPFFGDQGIAARVIQDIWEVGVIVEGKVFTKNGFVKSLN
LILVQEDGKKIRDNALKVKQIVQDAVGPHGQAAEDFNTLVEVISSS
MKNKQHVAIFPFPFGSHLPPLLNLVLKLAHIAPNTSFSFIGTHSSNAFLFTKRHIPNNIRVFTISDGIPEGHVPANNPIE
KLDLFLSTGPDNLRKGIELAVAETKQSVTCIIADAFVTSSLLVAQTLNVPWIAFWPNVSCSLSLYFNIDLIRDKCSKDAK
NATLDFLPGLSKLRVEDVPQDMLDVGEKETLFSRTLNSLGVVLPQAKAVVVNFFAELDPPLFVKYMRSKLQSLLYVVPLP
CPQLLLPEIDSNGCLSWLDSKSSRSVAYVCFGTVVSPPPQEVVAVAEALEESGFPFVWALKESLLSILPKGFVERTSTRG
KVVSWVPQSHVLSHGSVGVFVTHCGANSVMESVSNGVPMICRPFFGDQGIAARVIQDIWEVGVIVEGKVFTKNGFVKSLN
LILVQEDGKKIRDNALKVKQIVQDAVGPHGQAAEDFNTLVEVISSS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Butterfly pea
sample
Ct3GT-A
43366
Clitoria ternatea
562
Escherichia coli
XL1-Blue
Plasmid
pQE-31
1
2.35
47.69
0.694
VAPOR DIFFUSION, HANGING DROP
5.6
0.2M ammonium acetate, 26%(w/v) PEG 4000, 0.1M sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2015-01-21
1
1
2015-11-04
1
2
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
3WC4 is the unliganded form of the same enzyme.
RCSB
Y
PDBJ
2014-09-23
REL
REL
DLM
3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)chromenium
GOL
GLYCEROL
HOH
water
3WC4
PDB entry 3WC4
PDB
experimental model
PC1
1001
2
DLM
DLM
1001
A
GOL
1002
3
GOL
GOL
1002
A
GOL
1003
3
GOL
GOL
1003
A
GOL
1004
3
GOL
GOL
1004
A
HOH
1
4
HOH
HOH
1101
A
HOH
2
4
HOH
HOH
1102
A
HOH
3
4
HOH
HOH
1103
A
HOH
4
4
HOH
HOH
1104
A
HOH
5
4
HOH
HOH
1105
A
HOH
6
4
HOH
HOH
1106
A
HOH
7
4
HOH
HOH
1107
A
HOH
8
4
HOH
HOH
1108
A
HOH
9
4
HOH
HOH
1109
A
HOH
10
4
HOH
HOH
1110
A
HOH
11
4
HOH
HOH
1111
A
HOH
12
4
HOH
HOH
1112
A
HOH
13
4
HOH
HOH
1113
A
HOH
14
4
HOH
HOH
1114
A
HOH
15
4
HOH
HOH
1115
A
HOH
16
4
HOH
HOH
1116
A
HOH
17
4
HOH
HOH
1117
A
HOH
18
4
HOH
HOH
1118
A
HOH
19
4
HOH
HOH
1119
A
HOH
20
4
HOH
HOH
1120
A
HOH
21
4
HOH
HOH
1121
A
HOH
22
4
HOH
HOH
1122
A
HOH
23
4
HOH
HOH
1123
A
HOH
24
4
HOH
HOH
1124
A
HOH
25
4
HOH
HOH
1125
A
HOH
26
4
HOH
HOH
1126
A
HOH
27
4
HOH
HOH
1127
A
HOH
28
4
HOH
HOH
1128
A
HOH
29
4
HOH
HOH
1129
A
HOH
30
4
HOH
HOH
1130
A
HOH
31
4
HOH
HOH
1131
A
HOH
32
4
HOH
HOH
1132
A
HOH
33
4
HOH
HOH
1133
A
HOH
34
4
HOH
HOH
1134
A
HOH
35
4
HOH
HOH
1135
A
HOH
36
4
HOH
HOH
1136
A
HOH
37
4
HOH
HOH
1137
A
HOH
38
4
HOH
HOH
1138
A
HOH
39
4
HOH
HOH
1139
A
HOH
40
4
HOH
HOH
1140
A
HOH
41
4
HOH
HOH
1141
A
HOH
42
4
HOH
HOH
1142
A
HOH
43
4
HOH
HOH
1143
A
HOH
44
4
HOH
HOH
1144
A
HOH
45
4
HOH
HOH
1145
A
HOH
46
4
HOH
HOH
1146
A
HOH
47
4
HOH
HOH
1147
A
HOH
48
4
HOH
HOH
1148
A
HOH
49
4
HOH
HOH
1149
A
HOH
50
4
HOH
HOH
1150
A
HOH
51
4
HOH
HOH
1151
A
HOH
52
4
HOH
HOH
1152
A
HOH
53
4
HOH
HOH
1153
A
HOH
54
4
HOH
HOH
1154
A
HOH
55
4
HOH
HOH
1155
A
HOH
56
4
HOH
HOH
1156
A
HOH
57
4
HOH
HOH
1157
A
HOH
58
4
HOH
HOH
1158
A
HOH
59
4
HOH
HOH
1159
A
HOH
60
4
HOH
HOH
1160
A
HOH
61
4
HOH
HOH
1161
A
HOH
62
4
HOH
HOH
1162
A
HOH
63
4
HOH
HOH
1163
A
HOH
64
4
HOH
HOH
1164
A
HOH
65
4
HOH
HOH
1165
A
HOH
66
4
HOH
HOH
1166
A
HOH
67
4
HOH
HOH
1167
A
HOH
68
4
HOH
HOH
1168
A
HOH
69
4
HOH
HOH
1169
A
HOH
70
4
HOH
HOH
1170
A
HOH
71
4
HOH
HOH
1171
A
HOH
72
4
HOH
HOH
1172
A
HOH
73
4
HOH
HOH
1173
A
HOH
74
4
HOH
HOH
1174
A
HOH
75
4
HOH
HOH
1175
A
HOH
76
4
HOH
HOH
1176
A
HOH
77
4
HOH
HOH
1177
A
HOH
78
4
HOH
HOH
1178
A
HOH
79
4
HOH
HOH
1179
A
HOH
80
4
HOH
HOH
1180
A
HOH
81
4
HOH
HOH
1181
A
HOH
83
4
HOH
HOH
1182
A
HOH
84
4
HOH
HOH
1183
A
HOH
85
4
HOH
HOH
1184
A
HOH
86
4
HOH
HOH
1185
A
HOH
87
4
HOH
HOH
1186
A
HOH
88
4
HOH
HOH
1187
A
HOH
89
4
HOH
HOH
1188
A
HOH
90
4
HOH
HOH
1189
A
HOH
91
4
HOH
HOH
1190
A
HOH
92
4
HOH
HOH
1191
A
HOH
93
4
HOH
HOH
1192
A
HOH
94
4
HOH
HOH
1193
A
HOH
95
4
HOH
HOH
1194
A
HOH
96
4
HOH
HOH
1195
A
HOH
97
4
HOH
HOH
1196
A
HOH
98
4
HOH
HOH
1197
A
HOH
100
4
HOH
HOH
1198
A
HOH
101
4
HOH
HOH
1199
A
HOH
102
4
HOH
HOH
1200
A
HOH
103
4
HOH
HOH
1201
A
HOH
104
4
HOH
HOH
1202
A
HOH
105
4
HOH
HOH
1203
A
HOH
106
4
HOH
HOH
1204
A
HOH
107
4
HOH
HOH
1205
A
HOH
109
4
HOH
HOH
1206
A
HOH
110
4
HOH
HOH
1207
A
HOH
111
4
HOH
HOH
1208
A
HOH
112
4
HOH
HOH
1209
A
HOH
114
4
HOH
HOH
1210
A
HOH
119
4
HOH
HOH
1211
A
HOH
120
4
HOH
HOH
1212
A
HOH
121
4
HOH
HOH
1213
A
HOH
122
4
HOH
HOH
1214
A
HOH
123
4
HOH
HOH
1215
A
HOH
125
4
HOH
HOH
1216
A
HOH
126
4
HOH
HOH
1217
A
HOH
127
4
HOH
HOH
1218
A
HOH
128
4
HOH
HOH
1219
A
HOH
129
4
HOH
HOH
1220
A
HOH
130
4
HOH
HOH
1221
A
HOH
131
4
HOH
HOH
1222
A
HOH
132
4
HOH
HOH
1223
A
HOH
133
4
HOH
HOH
1224
A
HOH
134
4
HOH
HOH
1225
A
HOH
135
4
HOH
HOH
1226
A
HOH
136
4
HOH
HOH
1227
A
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
ASN
3
n
3
ASN
3
A
LYS
4
n
4
LYS
4
A
GLN
5
n
5
GLN
5
A
HIS
6
n
6
HIS
6
A
VAL
7
n
7
VAL
7
A
ALA
8
n
8
ALA
8
A
ILE
9
n
9
ILE
9
A
PHE
10
n
10
PHE
10
A
PRO
11
n
11
PRO
11
A
PHE
12
n
12
PHE
12
A
PRO
13
n
13
PRO
13
A
PHE
14
n
14
PHE
14
A
GLY
15
n
15
GLY
15
A
SER
16
n
16
SER
16
A
HIS
17
n
17
HIS
17
A
LEU
18
n
18
LEU
18
A
PRO
19
n
19
PRO
19
A
PRO
20
n
20
PRO
20
A
LEU
21
n
21
LEU
21
A
LEU
22
n
22
LEU
22
A
ASN
23
n
23
ASN
23
A
LEU
24
n
24
LEU
24
A
VAL
25
n
25
VAL
25
A
LEU
26
n
26
LEU
26
A
LYS
27
n
27
LYS
27
A
LEU
28
n
28
LEU
28
A
ALA
29
n
29
ALA
29
A
HIS
30
n
30
HIS
30
A
ILE
31
n
31
ILE
31
A
ALA
32
n
32
ALA
32
A
PRO
33
n
33
PRO
33
A
ASN
34
n
34
ASN
34
A
THR
35
n
35
THR
35
A
SER
36
n
36
SER
36
A
PHE
37
n
37
PHE
37
A
SER
38
n
38
SER
38
A
PHE
39
n
39
PHE
39
A
ILE
40
n
40
ILE
40
A
GLY
41
n
41
GLY
41
A
THR
42
n
42
THR
42
A
HIS
43
n
43
HIS
43
A
SER
44
n
44
SER
44
A
SER
45
n
45
SER
45
A
ASN
46
n
46
ASN
46
A
ALA
47
n
47
ALA
47
A
PHE
48
n
48
PHE
48
A
LEU
49
n
49
LEU
49
A
PHE
50
n
50
PHE
50
A
THR
51
n
51
THR
51
A
LYS
52
n
52
LYS
52
A
ARG
53
n
53
ARG
53
A
HIS
54
n
54
HIS
54
A
ILE
55
n
55
ILE
55
A
PRO
56
n
56
PRO
56
A
ASN
57
n
57
ASN
57
A
ASN
58
n
58
ASN
58
A
ILE
59
n
59
ILE
59
A
ARG
60
n
60
ARG
60
A
VAL
61
n
61
VAL
61
A
PHE
62
n
62
PHE
62
A
THR
63
n
63
THR
63
A
ILE
64
n
64
ILE
64
A
SER
65
n
65
SER
65
A
ASP
66
n
66
ASP
66
A
GLY
67
n
67
GLY
67
A
ILE
68
n
68
ILE
68
A
PRO
69
n
69
PRO
69
A
GLU
70
n
70
GLU
70
A
GLY
71
n
71
GLY
71
A
HIS
72
n
72
HIS
72
A
VAL
73
n
73
VAL
73
A
PRO
74
n
74
PRO
74
A
ALA
75
n
75
ALA
75
A
ASN
76
n
76
ASN
76
A
ASN
77
n
77
ASN
77
A
PRO
78
n
78
PRO
78
A
ILE
79
n
79
ILE
79
A
GLU
80
n
80
GLU
80
A
LYS
81
n
81
LYS
81
A
LEU
82
n
82
LEU
82
A
ASP
83
n
83
ASP
83
A
LEU
84
n
84
LEU
84
A
PHE
85
n
85
PHE
85
A
LEU
86
n
86
LEU
86
A
SER
87
n
87
SER
87
A
THR
88
n
88
THR
88
A
GLY
89
n
89
GLY
89
A
PRO
90
n
90
PRO
90
A
ASP
91
n
91
ASP
91
A
ASN
92
n
92
ASN
92
A
LEU
93
n
93
LEU
93
A
ARG
94
n
94
ARG
94
A
LYS
95
n
95
LYS
95
A
GLY
96
n
96
GLY
96
A
ILE
97
n
97
ILE
97
A
GLU
98
n
98
GLU
98
A
LEU
99
n
99
LEU
99
A
ALA
100
n
100
ALA
100
A
VAL
101
n
101
VAL
101
A
ALA
102
n
102
ALA
102
A
GLU
103
n
103
GLU
103
A
THR
104
n
104
THR
104
A
LYS
105
n
105
LYS
105
A
GLN
106
n
106
GLN
106
A
SER
107
n
107
SER
107
A
VAL
108
n
108
VAL
108
A
THR
109
n
109
THR
109
A
CYS
110
n
110
CYS
110
A
ILE
111
n
111
ILE
111
A
ILE
112
n
112
ILE
112
A
ALA
113
n
113
ALA
113
A
ASP
114
n
114
ASP
114
A
ALA
115
n
115
ALA
115
A
PHE
116
n
116
PHE
116
A
VAL
117
n
117
VAL
117
A
THR
118
n
118
THR
118
A
SER
119
n
119
SER
119
A
SER
120
n
120
SER
120
A
LEU
121
n
121
LEU
121
A
LEU
122
n
122
LEU
122
A
VAL
123
n
123
VAL
123
A
ALA
124
n
124
ALA
124
A
GLN
125
n
125
GLN
125
A
THR
126
n
126
THR
126
A
LEU
127
n
127
LEU
127
A
ASN
128
n
128
ASN
128
A
VAL
129
n
129
VAL
129
A
PRO
130
n
130
PRO
130
A
TRP
131
n
131
TRP
131
A
ILE
132
n
132
ILE
132
A
ALA
133
n
133
ALA
133
A
PHE
134
n
134
PHE
134
A
TRP
135
n
135
TRP
135
A
PRO
136
n
136
PRO
136
A
ASN
137
n
137
ASN
137
A
VAL
138
n
138
VAL
138
A
SER
139
n
139
SER
139
A
CYS
140
n
140
CYS
140
A
SER
141
n
141
SER
141
A
LEU
142
n
142
LEU
142
A
SER
143
n
143
SER
143
A
LEU
144
n
144
LEU
144
A
TYR
145
n
145
TYR
145
A
PHE
146
n
146
PHE
146
A
ASN
147
n
147
ASN
147
A
ILE
148
n
148
ILE
148
A
ASP
149
n
149
ASP
149
A
LEU
150
n
150
LEU
150
A
ILE
151
n
151
ILE
151
A
ARG
152
n
152
ARG
152
A
ASP
153
n
153
ASP
153
A
LYS
154
n
154
LYS
154
A
CYS
155
n
155
CYS
155
A
SER
156
n
156
SER
156
A
LYS
157
n
157
LYS
157
A
ASP
158
n
158
ASP
158
A
ALA
159
n
159
ALA
159
A
LYS
160
n
160
LYS
160
A
ASN
161
n
161
ASN
161
A
ALA
162
n
162
ALA
162
A
THR
163
n
163
THR
163
A
LEU
164
n
164
LEU
164
A
ASP
165
n
165
ASP
165
A
PHE
166
n
166
PHE
166
A
LEU
167
n
167
LEU
167
A
PRO
168
n
168
PRO
168
A
GLY
169
n
169
GLY
169
A
LEU
170
n
170
LEU
170
A
SER
171
n
171
SER
171
A
LYS
172
n
172
LYS
172
A
LEU
173
n
173
LEU
173
A
ARG
174
n
174
ARG
174
A
VAL
175
n
175
VAL
175
A
GLU
176
n
176
GLU
176
A
ASP
177
n
177
ASP
177
A
VAL
178
n
178
VAL
178
A
PRO
179
n
179
PRO
179
A
GLN
180
n
180
GLN
180
A
ASP
181
n
181
ASP
181
A
MET
182
n
182
MET
182
A
LEU
183
n
183
LEU
183
A
ASP
184
n
184
ASP
184
A
VAL
185
n
185
VAL
185
A
GLY
186
n
186
GLY
186
A
GLU
187
n
187
GLU
187
A
LYS
188
n
188
LYS
188
A
GLU
189
n
189
GLU
189
A
THR
190
n
190
THR
190
A
LEU
191
n
191
LEU
191
A
PHE
192
n
192
PHE
192
A
SER
193
n
193
SER
193
A
ARG
194
n
194
ARG
194
A
THR
195
n
195
THR
195
A
LEU
196
n
196
LEU
196
A
ASN
197
n
197
ASN
197
A
SER
198
n
198
SER
198
A
LEU
199
n
199
LEU
199
A
GLY
200
n
200
GLY
200
A
VAL
201
n
201
VAL
201
A
VAL
202
n
202
VAL
202
A
LEU
203
n
203
LEU
203
A
PRO
204
n
204
PRO
204
A
GLN
205
n
205
GLN
205
A
ALA
206
n
206
ALA
206
A
LYS
207
n
207
LYS
207
A
ALA
208
n
208
ALA
208
A
VAL
209
n
209
VAL
209
A
VAL
210
n
210
VAL
210
A
VAL
211
n
211
VAL
211
A
ASN
212
n
212
ASN
212
A
PHE
213
n
213
PHE
213
A
PHE
214
n
214
PHE
214
A
ALA
215
n
215
ALA
215
A
GLU
216
n
216
GLU
216
A
LEU
217
n
217
LEU
217
A
ASP
218
n
218
ASP
218
A
PRO
219
n
219
PRO
219
A
PRO
220
n
220
PRO
220
A
LEU
221
n
221
LEU
221
A
PHE
222
n
222
PHE
222
A
VAL
223
n
223
VAL
223
A
LYS
224
n
224
LYS
224
A
TYR
225
n
225
TYR
225
A
MET
226
n
226
MET
226
A
ARG
227
n
227
ARG
227
A
SER
228
n
228
SER
228
A
LYS
229
n
229
LYS
229
A
LEU
230
n
230
LEU
230
A
GLN
231
n
231
GLN
231
A
SER
232
n
232
SER
232
A
LEU
233
n
233
LEU
233
A
LEU
234
n
234
LEU
234
A
TYR
235
n
235
TYR
235
A
VAL
236
n
236
VAL
236
A
VAL
237
n
237
VAL
237
A
PRO
238
n
238
PRO
238
A
LEU
239
n
239
LEU
239
A
PRO
240
n
240
PRO
240
A
CYS
241
n
241
CYS
241
A
PRO
242
n
242
PRO
242
A
GLN
243
n
243
GLN
243
A
LEU
244
n
244
LEU
244
A
LEU
245
n
245
LEU
245
A
LEU
246
n
246
LEU
246
A
PRO
247
n
247
PRO
247
A
GLU
248
n
248
GLU
248
A
ILE
249
n
249
ILE
249
A
ASP
250
n
250
ASP
250
A
SER
251
n
251
SER
251
A
ASN
252
n
252
ASN
252
A
GLY
253
n
253
GLY
253
A
CYS
254
n
254
CYS
254
A
LEU
255
n
255
LEU
255
A
SER
256
n
256
SER
256
A
TRP
257
n
257
TRP
257
A
LEU
258
n
258
LEU
258
A
ASP
259
n
259
ASP
259
A
SER
260
n
260
SER
260
A
LYS
261
n
261
LYS
261
A
SER
262
n
262
SER
262
A
SER
263
n
263
SER
263
A
ARG
264
n
264
ARG
264
A
SER
265
n
265
SER
265
A
VAL
266
n
266
VAL
266
A
ALA
267
n
267
ALA
267
A
TYR
268
n
268
TYR
268
A
VAL
269
n
269
VAL
269
A
CYS
270
n
270
CYS
270
A
PHE
271
n
271
PHE
271
A
GLY
272
n
272
GLY
272
A
THR
273
n
273
THR
273
A
VAL
274
n
274
VAL
274
A
VAL
275
n
275
VAL
275
A
SER
276
n
276
SER
276
A
PRO
277
n
277
PRO
277
A
PRO
278
n
278
PRO
278
A
PRO
279
n
279
PRO
279
A
GLN
280
n
280
GLN
280
A
GLU
281
n
281
GLU
281
A
VAL
282
n
282
VAL
282
A
VAL
283
n
283
VAL
283
A
ALA
284
n
284
ALA
284
A
VAL
285
n
285
VAL
285
A
ALA
286
n
286
ALA
286
A
GLU
287
n
287
GLU
287
A
ALA
288
n
288
ALA
288
A
LEU
289
n
289
LEU
289
A
GLU
290
n
290
GLU
290
A
GLU
291
n
291
GLU
291
A
SER
292
n
292
SER
292
A
GLY
293
n
293
GLY
293
A
PHE
294
n
294
PHE
294
A
PRO
295
n
295
PRO
295
A
PHE
296
n
296
PHE
296
A
VAL
297
n
297
VAL
297
A
TRP
298
n
298
TRP
298
A
ALA
299
n
299
ALA
299
A
LEU
300
n
300
LEU
300
A
LYS
301
n
301
LYS
301
A
GLU
302
n
302
GLU
302
A
SER
303
n
303
SER
303
A
LEU
304
n
304
LEU
304
A
LEU
305
n
305
LEU
305
A
SER
306
n
306
SER
306
A
ILE
307
n
307
ILE
307
A
LEU
308
n
308
LEU
308
A
PRO
309
n
309
PRO
309
A
LYS
310
n
310
LYS
310
A
GLY
311
n
311
GLY
311
A
PHE
312
n
312
PHE
312
A
VAL
313
n
313
VAL
313
A
GLU
314
n
314
GLU
314
A
ARG
315
n
315
ARG
315
A
THR
316
n
316
THR
316
A
SER
317
n
317
SER
317
A
THR
318
n
318
THR
318
A
ARG
319
n
319
ARG
319
A
GLY
320
n
320
GLY
320
A
LYS
321
n
321
LYS
321
A
VAL
322
n
322
VAL
322
A
VAL
323
n
323
VAL
323
A
SER
324
n
324
SER
324
A
TRP
325
n
325
TRP
325
A
VAL
326
n
326
VAL
326
A
PRO
327
n
327
PRO
327
A
GLN
328
n
328
GLN
328
A
SER
329
n
329
SER
329
A
HIS
330
n
330
HIS
330
A
VAL
331
n
331
VAL
331
A
LEU
332
n
332
LEU
332
A
SER
333
n
333
SER
333
A
HIS
334
n
334
HIS
334
A
GLY
335
n
335
GLY
335
A
SER
336
n
336
SER
336
A
VAL
337
n
337
VAL
337
A
GLY
338
n
338
GLY
338
A
VAL
339
n
339
VAL
339
A
PHE
340
n
340
PHE
340
A
VAL
341
n
341
VAL
341
A
THR
342
n
342
THR
342
A
HIS
343
n
343
HIS
343
A
CYS
344
n
344
CYS
344
A
GLY
345
n
345
GLY
345
A
ALA
346
n
346
ALA
346
A
ASN
347
n
347
ASN
347
A
SER
348
n
348
SER
348
A
VAL
349
n
349
VAL
349
A
MET
350
n
350
MET
350
A
GLU
351
n
351
GLU
351
A
SER
352
n
352
SER
352
A
VAL
353
n
353
VAL
353
A
SER
354
n
354
SER
354
A
ASN
355
n
355
ASN
355
A
GLY
356
n
356
GLY
356
A
VAL
357
n
357
VAL
357
A
PRO
358
n
358
PRO
358
A
MET
359
n
359
MET
359
A
ILE
360
n
360
ILE
360
A
CYS
361
n
361
CYS
361
A
ARG
362
n
362
ARG
362
A
PRO
363
n
363
PRO
363
A
PHE
364
n
364
PHE
364
A
PHE
365
n
365
PHE
365
A
GLY
366
n
366
GLY
366
A
ASP
367
n
367
ASP
367
A
GLN
368
n
368
GLN
368
A
GLY
369
n
369
GLY
369
A
ILE
370
n
370
ILE
370
A
ALA
371
n
371
ALA
371
A
ALA
372
n
372
ALA
372
A
ARG
373
n
373
ARG
373
A
VAL
374
n
374
VAL
374
A
ILE
375
n
375
ILE
375
A
GLN
376
n
376
GLN
376
A
ASP
377
n
377
ASP
377
A
ILE
378
n
378
ILE
378
A
TRP
379
n
379
TRP
379
A
GLU
380
n
380
GLU
380
A
VAL
381
n
381
VAL
381
A
GLY
382
n
382
GLY
382
A
VAL
383
n
383
VAL
383
A
ILE
384
n
384
ILE
384
A
VAL
385
n
385
VAL
385
A
GLU
386
n
386
GLU
386
A
GLY
387
n
387
GLY
387
A
LYS
388
n
388
LYS
388
A
VAL
389
n
389
VAL
389
A
PHE
390
n
390
PHE
390
A
THR
391
n
391
THR
391
A
LYS
392
n
392
LYS
392
A
ASN
393
n
393
ASN
393
A
GLY
394
n
394
GLY
394
A
PHE
395
n
395
PHE
395
A
VAL
396
n
396
VAL
396
A
LYS
397
n
397
LYS
397
A
SER
398
n
398
SER
398
A
LEU
399
n
399
LEU
399
A
ASN
400
n
400
ASN
400
A
LEU
401
n
401
LEU
401
A
ILE
402
n
402
ILE
402
A
LEU
403
n
403
LEU
403
A
VAL
404
n
404
VAL
404
A
GLN
405
n
405
GLN
405
A
GLU
406
n
406
GLU
406
A
ASP
407
n
407
ASP
407
A
GLY
408
n
408
GLY
408
A
LYS
409
n
409
LYS
409
A
LYS
410
n
410
LYS
410
A
ILE
411
n
411
ILE
411
A
ARG
412
n
412
ARG
412
A
ASP
413
n
413
ASP
413
A
ASN
414
n
414
ASN
414
A
ALA
415
n
415
ALA
415
A
LEU
416
n
416
LEU
416
A
LYS
417
n
417
LYS
417
A
VAL
418
n
418
VAL
418
A
LYS
419
n
419
LYS
419
A
GLN
420
n
420
GLN
420
A
ILE
421
n
421
ILE
421
A
VAL
422
n
422
VAL
422
A
GLN
423
n
423
GLN
423
A
ASP
424
n
424
ASP
424
A
ALA
425
n
425
ALA
425
A
VAL
426
n
426
VAL
426
A
GLY
427
n
427
GLY
427
A
PRO
428
n
428
PRO
428
A
HIS
429
n
429
HIS
429
A
GLY
430
n
430
GLY
430
A
GLN
431
n
431
GLN
431
A
ALA
432
n
432
ALA
432
A
ALA
433
n
433
ALA
433
A
GLU
434
n
434
GLU
434
A
ASP
435
n
435
ASP
435
A
PHE
436
n
436
PHE
436
A
ASN
437
n
437
ASN
437
A
THR
438
n
438
THR
438
A
LEU
439
n
439
LEU
439
A
VAL
440
n
440
VAL
440
A
GLU
441
n
441
GLU
441
A
VAL
442
n
442
VAL
442
A
ILE
443
n
443
ILE
443
A
SER
444
n
444
SER
444
A
SER
445
n
445
SER
445
A
SER
446
n
446
SER
446
A
0.2650
0.1564
0.1097
0.6106
-0.1314
0.7117
-0.0146
0.0211
-0.0067
0.0172
-0.0008
0.0147
-0.0060
0.0060
0.0007
0.0313
0.0035
0.0063
0.0590
-0.0129
0.0513
refined
6.0585
6.4177
15.9329
X-RAY DIFFRACTION
0.6068
0.3515
0.0183
0.3062
-0.0236
0.2441
-0.0220
0.0203
0.0202
0.0171
0.0780
0.0838
0.0043
0.0104
0.0000
0.1353
0.0104
0.0011
0.1243
-0.0017
0.1458
refined
-5.7016
-7.6041
32.1823
X-RAY DIFFRACTION
A
1
A
248
X-RAY DIFFRACTION
1
chain A and (resid 1 through 248 )
A
249
A
446
X-RAY DIFFRACTION
2
chain A and (resid 249 through 446 )
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ARG
60
A
O
ARG
60
A
N
PHE
37
A
N
PHE
37
A
O
SER
38
A
O
SER
38
A
N
ILE
9
A
N
ILE
9
A
N
ALA
8
A
N
ALA
8
A
O
CYS
110
A
O
CYS
110
A
N
ILE
111
A
N
ILE
111
A
O
ILE
132
A
O
ILE
132
A
N
ALA
133
A
N
ALA
133
A
O
VAL
210
A
O
VAL
210
A
N
VAL
211
A
N
VAL
211
A
O
LEU
234
A
O
LEU
234
A
O
LYS
321
A
O
LYS
321
A
N
TRP
298
A
N
TRP
298
A
O
VAL
297
A
O
VAL
297
A
N
VAL
269
A
N
VAL
269
A
N
VAL
266
A
N
VAL
266
A
O
GLY
338
A
O
GLY
338
A
N
THR
342
A
N
THR
342
A
O
ILE
360
A
O
ILE
360
A
N
CYS
361
A
N
CYS
361
A
O
VAL
383
A
O
VAL
383
1
A
PRO
78
-65.59
2.44
1
A
ASN
147
-141.36
36.75
1
A
LEU
164
-100.68
65.96
1
A
CYS
344
74.00
44.78
1
A
ILE
378
-110.61
-70.54
1
A
LYS
388
68.30
-16.84
1
A
HIS
429
-143.72
59.32
85.730
32.43
5.270
0.2338
0.1811
0.1838
2.550
37.905
750
14854
5.0500
99.06
0.8437
0.1900
RANDOM
1
THROUGHOUT
1.340
MOLECULAR REPLACEMENT
22.5600
0.9000
1.1100
PDB entry 3WC4
ML
FLAT BULK SOLVENT MODEL
2.550
37.905
127
3604
40
0
3437
0.003
3583
0.748
4883
0.050
570
0.003
622
13.304
1302
0.3108
0.2260
2.7464
145
2766
2911
5
98.0
0.3115
0.2172
3.0227
150
2804
2954
5
100
0.2471
0.2029
3.4598
160
2820
2980
5
99.0
0.2137
0.1567
4.3580
139
2824
2963
5
99.0
0.1820
0.1574
37.9088
156
2890
3046
5
99.0
28.14
2.55
50
4REM
14870
0.099
2.522
1
11.4
3.6
99.5
0.323
2.55
2.64
1482
2.371
1
3.7
0
99.9
0.283
2.64
2.75
1494
2.275
1
3.7
0
99.9
0.236
2.75
2.87
1458
2.393
1
3.7
0
99.9
0.194
2.87
3.02
1467
2.331
1
3.7
0
99.8
0.157
3.02
3.21
1483
2.430
1
3.7
0
99.7
0.113
3.21
3.46
1486
2.637
1
3.6
0
99.3
0.083
3.46
3.81
1485
2.560
1
3.6
0
99.7
0.065
3.81
4.36
1478
2.778
1
3.6
0
99.1
0.059
4.36
5.49
1503
2.790
1
3.6
0
98.8
0.051
5.49
50
1534
2.663
1
3.5
0
99.2
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.2_1309
data extraction
PDB
deposit@deposit.rcsb.org
July. 29, 2014
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.15
data reduction
DENZO
data reduction
HKL-2000
phasing
PHASER
Crystal structure of UDP-glucose: anthocyanidin 3-O-glucosyltransferase in complex with delphinidin
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
PHE
14
A
PHE
14
HELX_P
A
SER
16
A
SER
16
5
1
3
A
HIS
17
A
HIS
17
HELX_P
A
ALA
32
A
ALA
32
1
2
16
A
HIS
43
A
HIS
43
HELX_P
A
THR
51
A
THR
51
1
3
9
A
ILE
79
A
ILE
79
HELX_P
A
SER
87
A
SER
87
1
4
9
A
THR
88
A
THR
88
HELX_P
A
LYS
105
A
LYS
105
1
5
18
A
THR
118
A
THR
118
HELX_P
A
ASN
128
A
ASN
128
1
6
11
A
VAL
138
A
VAL
138
HELX_P
A
PHE
146
A
PHE
146
5
7
9
A
ASN
147
A
ASN
147
HELX_P
A
ASP
158
A
ASP
158
1
8
12
A
ARG
174
A
ARG
174
HELX_P
A
VAL
178
A
VAL
178
5
9
5
A
PRO
179
A
PRO
179
HELX_P
A
ASP
184
A
ASP
184
1
10
6
A
VAL
185
A
VAL
185
HELX_P
A
GLU
189
A
GLU
189
5
11
5
A
THR
190
A
THR
190
HELX_P
A
ASN
197
A
ASN
197
1
12
8
A
SER
198
A
SER
198
HELX_P
A
LEU
203
A
LEU
203
1
13
6
A
PRO
204
A
PRO
204
HELX_P
A
ALA
206
A
ALA
206
5
14
3
A
PRO
219
A
PRO
219
HELX_P
A
SER
228
A
SER
228
1
15
10
A
GLY
253
A
GLY
253
HELX_P
A
ASP
259
A
ASP
259
1
16
7
A
PRO
278
A
PRO
278
HELX_P
A
GLY
293
A
GLY
293
1
17
16
A
LYS
301
A
LYS
301
HELX_P
A
LEU
305
A
LEU
305
5
18
5
A
GLY
311
A
GLY
311
HELX_P
A
THR
316
A
THR
316
1
19
6
A
PRO
327
A
PRO
327
HELX_P
A
SER
333
A
SER
333
1
20
7
A
GLY
345
A
GLY
345
HELX_P
A
SER
354
A
SER
354
1
21
10
A
ASP
367
A
ASP
367
HELX_P
A
ILE
378
A
ILE
378
1
22
12
A
THR
391
A
THR
391
HELX_P
A
VAL
404
A
VAL
404
1
23
14
A
GLN
405
A
GLN
405
HELX_P
A
ASP
407
A
ASP
407
5
24
3
A
GLY
408
A
GLY
408
HELX_P
A
VAL
426
A
VAL
426
1
25
19
A
GLY
430
A
GLY
430
HELX_P
A
SER
446
A
SER
446
1
26
17
TRANSFERASE
UGT78K6, GT-B fold, Glucosyltransferase, Complexed with delphinidin, TRANSFERASE
A4F1R4_CLITE
UNP
1
1
A4F1R4
MKNKQHVAIFPFPFGSHLPPLLNLVLKLAHIAPNTSFSFIGTHSSNAFLFTKRHIPNNIRVFTISDGIPEGHVPANNPIE
KLDLFLSTGPDNLRKGIELAVAETKQSVTCIIADAFVTSSLLVAQTLNVPWIAFWPNVSCSLSLYFNIDLIRDKCSKDAK
NATLDFLPGLSKLRVEDVPQDMLDVGEKETLFSRTLNSLGVVLPQAKAVVVNFFAELDPPLFVKYMRSKLQSLLYVVPLP
CPQLLLPEIDSNGCLSWLDSKSSRSVAYVCFGTVVSPPPQEVVAVAEALEESGFPFVWALKESLLSILPKGFVERTSTRG
KVVSWVPQSHVLSHGSVGVFVTHCGANSVMESVSNGVPMICRPFFGDQGIAARVIQDIWEVGVIVEGKVFTKNGFVKSLN
LILVQEDGKKIRDNALKVKQIVQDAVGPHGQAAEDFNTLVEVISSS
1
446
4REM
1
446
A4F1R4
A
1
1
446
7
6
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
ILE
59
A
ILE
59
A
ILE
64
A
ILE
64
A
SER
36
A
SER
36
A
THR
42
A
THR
42
A
HIS
6
A
HIS
6
A
PHE
10
A
PHE
10
A
CYS
110
A
CYS
110
A
ASP
114
A
ASP
114
A
TRP
131
A
TRP
131
A
TRP
135
A
TRP
135
A
ALA
208
A
ALA
208
A
VAL
211
A
VAL
211
A
LEU
233
A
LEU
233
A
TYR
235
A
TYR
235
A
GLY
320
A
GLY
320
A
VAL
323
A
VAL
323
A
PHE
296
A
PHE
296
A
ALA
299
A
ALA
299
A
VAL
266
A
VAL
266
A
CYS
270
A
CYS
270
A
VAL
337
A
VAL
337
A
THR
342
A
THR
342
A
MET
359
A
MET
359
A
CYS
361
A
CYS
361
A
GLY
382
A
GLY
382
A
ILE
384
A
ILE
384
BINDING SITE FOR RESIDUE DLM A 1001
A
DLM
1001
Software
16
BINDING SITE FOR RESIDUE GOL A 1002
A
GOL
1002
Software
7
BINDING SITE FOR RESIDUE GOL A 1003
A
GOL
1003
Software
8
BINDING SITE FOR RESIDUE GOL A 1004
A
GOL
1004
Software
4
A
HIS
17
A
HIS
17
16
1_555
A
PRO
78
A
PRO
78
16
1_555
A
ILE
79
A
ILE
79
16
1_555
A
LEU
82
A
LEU
82
16
1_555
A
ASN
137
A
ASN
137
16
1_555
A
TYR
145
A
TYR
145
16
1_555
A
PRO
179
A
PRO
179
16
1_555
A
ASP
181
A
ASP
181
16
1_555
A
PHE
192
A
PHE
192
16
1_555
A
LEU
196
A
LEU
196
16
1_555
A
PHE
365
A
PHE
365
16
1_555
A
GLY
366
A
GLY
366
16
1_555
A
ASP
367
A
ASP
367
16
1_555
A
GOL
1003
D
GOL
16
1_555
A
HOH
1174
F
HOH
16
1_555
A
HOH
1210
F
HOH
16
1_555
A
TYR
145
A
TYR
145
7
1_555
A
PHE
146
A
PHE
146
7
1_555
A
ASN
147
A
ASN
147
7
1_555
A
ILE
148
A
ILE
148
7
1_555
A
ASP
149
A
ASP
149
7
1_555
A
HOH
1119
F
HOH
7
1_555
A
HOH
1165
F
HOH
7
1_555
A
GLY
345
A
GLY
345
8
1_555
A
ALA
346
A
ALA
346
8
1_555
A
PHE
365
A
PHE
365
8
1_555
A
ASP
367
A
ASP
367
8
1_555
A
GLN
368
A
GLN
368
8
1_555
A
DLM
1001
B
DLM
8
1_555
A
HOH
1212
F
HOH
8
1_555
A
HOH
1215
F
HOH
8
1_555
A
ASP
153
A
ASP
153
4
1_555
A
LYS
154
A
LYS
154
4
1_555
A
ASP
158
A
ASP
158
4
1_555
A
SER
306
A
SER
306
4
1_655
4
P 1 21 1