0.005651 0.003262 0.000000 0.000000 0.006525 0.000000 0.000000 0.000000 0.011827 0.00000 0.00000 0.00000 Bailey-Elkin, B.A. Johnson, G.G. Mark, B.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 176.972 176.972 84.549 C3 H9 N 59.110 3-AMINOPROPANE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US J.Biol.Chem. JBCHA3 0071 0021-9258 289 34667 34682 10.1074/jbc.M114.609644 25320088 Crystal Structure of the Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Papain-like Protease Bound to Ubiquitin Facilitates Targeted Disruption of Deubiquitinating Activity to Demonstrate Its Role in Innate Immune Suppression. 2014 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Si(111) SINGLE WAVELENGTH M x-ray 1 1.28219 1.0 08B1-1 CLSI 1.28219 SYNCHROTRON CLSI BEAMLINE 08B1-1 36046.461 ORF1ab protein UNP residues 1480-1803 1 man polymer 8519.778 Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 1 man polymer 65.409 ZINC ION 1 syn non-polymer 96.063 SULFATE ION 9 syn non-polymer 59.110 3-AMINOPROPANE 1 syn non-polymer 18.015 water 55 nat water CEP52, Ubiquitin A-52 residue ribosomal protein fusion product 1, Ubiquitin, 60S ribosomal protein L40 no no TQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPT FLHRFYSLKAAVHGWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDSTDFIALIMAYGNC TFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQLVE HTTPWLLLSGTPNEKLVTTSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYS SDCN TQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPT FLHRFYSLKAAVHGWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDSTDFIALIMAYGNC TFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQLVE HTTPWLLLSGTPNEKLVTTSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYS SDCN A polypeptide(L) no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample ORF1ab 1306931 Human betacoronavirus 2c Jordan-N3/2012 562 Escherichia coli human sample UBA52, UBCEP2 9606 Homo sapiens 562 Escherichia coli 1 4.29 71.32 VAPOR DIFFUSION, HANGING DROP 8.5 1.80 M ammonium sulphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 repository Initial release Database references Database references 1 0 2014-10-22 1 1 2014-10-29 1 2 2015-01-14 RCSB Y RCSB 2014-09-24 REL REL ZN ZINC ION SO4 SULFATE ION 3CN 3-AMINOPROPANE HOH water ZN 1 3 ZN ZN 1901 A SO4 2 4 SO4 SO4 1902 A SO4 4 4 SO4 SO4 1903 A SO4 5 4 SO4 SO4 1904 A SO4 6 4 SO4 SO4 1905 A SO4 7 4 SO4 SO4 1906 A SO4 9 4 SO4 SO4 1907 A SO4 10 4 SO4 SO4 1908 A 3CN 76 5 3CN 3CN 101 B SO4 3 4 SO4 SO4 102 B SO4 8 4 SO4 SO4 103 B HOH 12 6 HOH HOH 2001 A HOH 14 6 HOH HOH 2002 A HOH 15 6 HOH HOH 2003 A HOH 19 6 HOH HOH 2004 A HOH 20 6 HOH HOH 2005 A HOH 21 6 HOH HOH 2006 A HOH 24 6 HOH HOH 2007 A HOH 29 6 HOH HOH 2008 A HOH 34 6 HOH HOH 2009 A HOH 35 6 HOH HOH 2010 A HOH 36 6 HOH HOH 2011 A HOH 37 6 HOH HOH 2012 A HOH 38 6 HOH HOH 2013 A HOH 40 6 HOH HOH 2014 A HOH 42 6 HOH HOH 2015 A HOH 44 6 HOH HOH 2016 A HOH 47 6 HOH HOH 2017 A HOH 48 6 HOH HOH 2018 A HOH 49 6 HOH HOH 2019 A HOH 50 6 HOH HOH 2020 A HOH 51 6 HOH HOH 2021 A HOH 52 6 HOH HOH 2022 A HOH 53 6 HOH HOH 2023 A HOH 54 6 HOH HOH 2024 A HOH 55 6 HOH HOH 2025 A HOH 56 6 HOH HOH 2026 A HOH 58 6 HOH HOH 2027 A HOH 59 6 HOH HOH 2028 A HOH 60 6 HOH HOH 2029 A HOH 61 6 HOH HOH 2030 A HOH 62 6 HOH HOH 2031 A HOH 63 6 HOH HOH 2032 A HOH 64 6 HOH HOH 2033 A HOH 66 6 HOH HOH 2034 A HOH 11 6 HOH HOH 201 B HOH 13 6 HOH HOH 202 B HOH 16 6 HOH HOH 203 B HOH 17 6 HOH HOH 204 B HOH 18 6 HOH HOH 205 B HOH 22 6 HOH HOH 206 B HOH 23 6 HOH HOH 207 B HOH 25 6 HOH HOH 208 B HOH 26 6 HOH HOH 209 B HOH 27 6 HOH HOH 210 B HOH 28 6 HOH HOH 211 B HOH 30 6 HOH HOH 212 B HOH 31 6 HOH HOH 213 B HOH 32 6 HOH HOH 214 B HOH 33 6 HOH HOH 215 B HOH 41 6 HOH HOH 216 B HOH 43 6 HOH HOH 217 B HOH 45 6 HOH HOH 218 B HOH 46 6 HOH HOH 219 B HOH 57 6 HOH HOH 220 B HOH 65 6 HOH HOH 221 B n 1 1480 A n 2 1481 A n 3 1482 A n 4 1483 A THR 1484 n 5 THR 1484 A ILE 1485 n 6 ILE 1485 A GLU 1486 n 7 GLU 1486 A VAL 1487 n 8 VAL 1487 A LEU 1488 n 9 LEU 1488 A VAL 1489 n 10 VAL 1489 A THR 1490 n 11 THR 1490 A VAL 1491 n 12 VAL 1491 A ASP 1492 n 13 ASP 1492 A GLY 1493 n 14 GLY 1493 A VAL 1494 n 15 VAL 1494 A ASN 1495 n 16 ASN 1495 A PHE 1496 n 17 PHE 1496 A ARG 1497 n 18 ARG 1497 A THR 1498 n 19 THR 1498 A VAL 1499 n 20 VAL 1499 A VAL 1500 n 21 VAL 1500 A LEU 1501 n 22 LEU 1501 A ASN 1502 n 23 ASN 1502 A ASN 1503 n 24 ASN 1503 A LYS 1504 n 25 LYS 1504 A ASN 1505 n 26 ASN 1505 A THR 1506 n 27 THR 1506 A TYR 1507 n 28 TYR 1507 A ARG 1508 n 29 ARG 1508 A SER 1509 n 30 SER 1509 A GLN 1510 n 31 GLN 1510 A LEU 1511 n 32 LEU 1511 A GLY 1512 n 33 GLY 1512 A CYS 1513 n 34 CYS 1513 A VAL 1514 n 35 VAL 1514 A PHE 1515 n 36 PHE 1515 A PHE 1516 n 37 PHE 1516 A ASN 1517 n 38 ASN 1517 A GLY 1518 n 39 GLY 1518 A ALA 1519 n 40 ALA 1519 A ASP 1520 n 41 ASP 1520 A ILE 1521 n 42 ILE 1521 A SER 1522 n 43 SER 1522 A ASP 1523 n 44 ASP 1523 A THR 1524 n 45 THR 1524 A ILE 1525 n 46 ILE 1525 A PRO 1526 n 47 PRO 1526 A ASP 1527 n 48 ASP 1527 A GLU 1528 n 49 GLU 1528 A LYS 1529 n 50 LYS 1529 A GLN 1530 n 51 GLN 1530 A ASN 1531 n 52 ASN 1531 A GLY 1532 n 53 GLY 1532 A HIS 1533 n 54 HIS 1533 A SER 1534 n 55 SER 1534 A LEU 1535 n 56 LEU 1535 A TYR 1536 n 57 TYR 1536 A LEU 1537 n 58 LEU 1537 A ALA 1538 n 59 ALA 1538 A ASP 1539 n 60 ASP 1539 A ASN 1540 n 61 ASN 1540 A LEU 1541 n 62 LEU 1541 A THR 1542 n 63 THR 1542 A ALA 1543 n 64 ALA 1543 A ASP 1544 n 65 ASP 1544 A GLU 1545 n 66 GLU 1545 A THR 1546 n 67 THR 1546 A LYS 1547 n 68 LYS 1547 A ALA 1548 n 69 ALA 1548 A LEU 1549 n 70 LEU 1549 A LYS 1550 n 71 LYS 1550 A GLU 1551 n 72 GLU 1551 A LEU 1552 n 73 LEU 1552 A TYR 1553 n 74 TYR 1553 A GLY 1554 n 75 GLY 1554 A PRO 1555 n 76 PRO 1555 A VAL 1556 n 77 VAL 1556 A ASP 1557 n 78 ASP 1557 A PRO 1558 n 79 PRO 1558 A THR 1559 n 80 THR 1559 A PHE 1560 n 81 PHE 1560 A LEU 1561 n 82 LEU 1561 A HIS 1562 n 83 HIS 1562 A ARG 1563 n 84 ARG 1563 A PHE 1564 n 85 PHE 1564 A TYR 1565 n 86 TYR 1565 A SER 1566 n 87 SER 1566 A LEU 1567 n 88 LEU 1567 A LYS 1568 n 89 LYS 1568 A ALA 1569 n 90 ALA 1569 A ALA 1570 n 91 ALA 1570 A VAL 1571 n 92 VAL 1571 A HIS 1572 n 93 HIS 1572 A GLY 1573 n 94 GLY 1573 A TRP 1574 n 95 TRP 1574 A LYS 1575 n 96 LYS 1575 A MET 1576 n 97 MET 1576 A VAL 1577 n 98 VAL 1577 A VAL 1578 n 99 VAL 1578 A CYS 1579 n 100 CYS 1579 A ASP 1580 n 101 ASP 1580 A LYS 1581 n 102 LYS 1581 A VAL 1582 n 103 VAL 1582 A ARG 1583 n 104 ARG 1583 A SER 1584 n 105 SER 1584 A LEU 1585 n 106 LEU 1585 A LYS 1586 n 107 LYS 1586 A LEU 1587 n 108 LEU 1587 A SER 1588 n 109 SER 1588 A ASP 1589 n 110 ASP 1589 A ASN 1590 n 111 ASN 1590 A ASN 1591 n 112 ASN 1591 A CYS 1592 n 113 CYS 1592 A TYR 1593 n 114 TYR 1593 A LEU 1594 n 115 LEU 1594 A ASN 1595 n 116 ASN 1595 A ALA 1596 n 117 ALA 1596 A VAL 1597 n 118 VAL 1597 A ILE 1598 n 119 ILE 1598 A MET 1599 n 120 MET 1599 A THR 1600 n 121 THR 1600 A LEU 1601 n 122 LEU 1601 A ASP 1602 n 123 ASP 1602 A LEU 1603 n 124 LEU 1603 A LEU 1604 n 125 LEU 1604 A LYS 1605 n 126 LYS 1605 A ASP 1606 n 127 ASP 1606 A ILE 1607 n 128 ILE 1607 A LYS 1608 n 129 LYS 1608 A PHE 1609 n 130 PHE 1609 A VAL 1610 n 131 VAL 1610 A ILE 1611 n 132 ILE 1611 A PRO 1612 n 133 PRO 1612 A ALA 1613 n 134 ALA 1613 A LEU 1614 n 135 LEU 1614 A GLN 1615 n 136 GLN 1615 A HIS 1616 n 137 HIS 1616 A ALA 1617 n 138 ALA 1617 A PHE 1618 n 139 PHE 1618 A MET 1619 n 140 MET 1619 A LYS 1620 n 141 LYS 1620 A HIS 1621 n 142 HIS 1621 A LYS 1622 n 143 LYS 1622 A GLY 1623 n 144 GLY 1623 A GLY 1624 n 145 GLY 1624 A ASP 1625 n 146 ASP 1625 A SER 1626 n 147 SER 1626 A THR 1627 n 148 THR 1627 A ASP 1628 n 149 ASP 1628 A PHE 1629 n 150 PHE 1629 A ILE 1630 n 151 ILE 1630 A ALA 1631 n 152 ALA 1631 A LEU 1632 n 153 LEU 1632 A ILE 1633 n 154 ILE 1633 A MET 1634 n 155 MET 1634 A ALA 1635 n 156 ALA 1635 A TYR 1636 n 157 TYR 1636 A GLY 1637 n 158 GLY 1637 A ASN 1638 n 159 ASN 1638 A CYS 1639 n 160 CYS 1639 A THR 1640 n 161 THR 1640 A PHE 1641 n 162 PHE 1641 A GLY 1642 n 163 GLY 1642 A ALA 1643 n 164 ALA 1643 A PRO 1644 n 165 PRO 1644 A ASP 1645 n 166 ASP 1645 A ASP 1646 n 167 ASP 1646 A ALA 1647 n 168 ALA 1647 A SER 1648 n 169 SER 1648 A ARG 1649 n 170 ARG 1649 A LEU 1650 n 171 LEU 1650 A LEU 1651 n 172 LEU 1651 A HIS 1652 n 173 HIS 1652 A THR 1653 n 174 THR 1653 A VAL 1654 n 175 VAL 1654 A LEU 1655 n 176 LEU 1655 A ALA 1656 n 177 ALA 1656 A LYS 1657 n 178 LYS 1657 A ALA 1658 n 179 ALA 1658 A GLU 1659 n 180 GLU 1659 A LEU 1660 n 181 LEU 1660 A CYS 1661 n 182 CYS 1661 A CYS 1662 n 183 CYS 1662 A SER 1663 n 184 SER 1663 A ALA 1664 n 185 ALA 1664 A ARG 1665 n 186 ARG 1665 A MET 1666 n 187 MET 1666 A VAL 1667 n 188 VAL 1667 A TRP 1668 n 189 TRP 1668 A ARG 1669 n 190 ARG 1669 A GLU 1670 n 191 GLU 1670 A TRP 1671 n 192 TRP 1671 A CYS 1672 n 193 CYS 1672 A ASN 1673 n 194 ASN 1673 A VAL 1674 n 195 VAL 1674 A CYS 1675 n 196 CYS 1675 A GLY 1676 n 197 GLY 1676 A ILE 1677 n 198 ILE 1677 A LYS 1678 n 199 LYS 1678 A ASP 1679 n 200 ASP 1679 A VAL 1680 n 201 VAL 1680 A VAL 1681 n 202 VAL 1681 A LEU 1682 n 203 LEU 1682 A GLN 1683 n 204 GLN 1683 A GLY 1684 n 205 GLY 1684 A LEU 1685 n 206 LEU 1685 A LYS 1686 n 207 LYS 1686 A ALA 1687 n 208 ALA 1687 A CYS 1688 n 209 CYS 1688 A CYS 1689 n 210 CYS 1689 A TYR 1690 n 211 TYR 1690 A VAL 1691 n 212 VAL 1691 A GLY 1692 n 213 GLY 1692 A VAL 1693 n 214 VAL 1693 A GLN 1694 n 215 GLN 1694 A THR 1695 n 216 THR 1695 A VAL 1696 n 217 VAL 1696 A GLU 1697 n 218 GLU 1697 A ASP 1698 n 219 ASP 1698 A LEU 1699 n 220 LEU 1699 A ARG 1700 n 221 ARG 1700 A ALA 1701 n 222 ALA 1701 A ARG 1702 n 223 ARG 1702 A MET 1703 n 224 MET 1703 A THR 1704 n 225 THR 1704 A TYR 1705 n 226 TYR 1705 A VAL 1706 n 227 VAL 1706 A CYS 1707 n 228 CYS 1707 A GLN 1708 n 229 GLN 1708 A CYS 1709 n 230 CYS 1709 A GLY 1710 n 231 GLY 1710 A GLY 1711 n 232 GLY 1711 A GLU 1712 n 233 GLU 1712 A ARG 1713 n 234 ARG 1713 A HIS 1714 n 235 HIS 1714 A ARG 1715 n 236 ARG 1715 A GLN 1716 n 237 GLN 1716 A LEU 1717 n 238 LEU 1717 A VAL 1718 n 239 VAL 1718 A GLU 1719 n 240 GLU 1719 A HIS 1720 n 241 HIS 1720 A THR 1721 n 242 THR 1721 A THR 1722 n 243 THR 1722 A PRO 1723 n 244 PRO 1723 A TRP 1724 n 245 TRP 1724 A LEU 1725 n 246 LEU 1725 A LEU 1726 n 247 LEU 1726 A LEU 1727 n 248 LEU 1727 A SER 1728 n 249 SER 1728 A GLY 1729 n 250 GLY 1729 A THR 1730 n 251 THR 1730 A PRO 1731 n 252 PRO 1731 A ASN 1732 n 253 ASN 1732 A GLU 1733 n 254 GLU 1733 A LYS 1734 n 255 LYS 1734 A LEU 1735 n 256 LEU 1735 A VAL 1736 n 257 VAL 1736 A THR 1737 n 258 THR 1737 A THR 1738 n 259 THR 1738 A SER 1739 n 260 SER 1739 A THR 1740 n 261 THR 1740 A ALA 1741 n 262 ALA 1741 A PRO 1742 n 263 PRO 1742 A ASP 1743 n 264 ASP 1743 A PHE 1744 n 265 PHE 1744 A VAL 1745 n 266 VAL 1745 A ALA 1746 n 267 ALA 1746 A PHE 1747 n 268 PHE 1747 A ASN 1748 n 269 ASN 1748 A VAL 1749 n 270 VAL 1749 A PHE 1750 n 271 PHE 1750 A GLN 1751 n 272 GLN 1751 A GLY 1752 n 273 GLY 1752 A ILE 1753 n 274 ILE 1753 A GLU 1754 n 275 GLU 1754 A THR 1755 n 276 THR 1755 A ALA 1756 n 277 ALA 1756 A VAL 1757 n 278 VAL 1757 A GLY 1758 n 279 GLY 1758 A HIS 1759 n 280 HIS 1759 A TYR 1760 n 281 TYR 1760 A VAL 1761 n 282 VAL 1761 A HIS 1762 n 283 HIS 1762 A ALA 1763 n 284 ALA 1763 A ARG 1764 n 285 ARG 1764 A LEU 1765 n 286 LEU 1765 A LYS 1766 n 287 LYS 1766 A GLY 1767 n 288 GLY 1767 A GLY 1768 n 289 GLY 1768 A LEU 1769 n 290 LEU 1769 A ILE 1770 n 291 ILE 1770 A LEU 1771 n 292 LEU 1771 A LYS 1772 n 293 LYS 1772 A PHE 1773 n 294 PHE 1773 A ASP 1774 n 295 ASP 1774 A SER 1775 n 296 SER 1775 A GLY 1776 n 297 GLY 1776 A THR 1777 n 298 THR 1777 A VAL 1778 n 299 VAL 1778 A SER 1779 n 300 SER 1779 A LYS 1780 n 301 LYS 1780 A THR 1781 n 302 THR 1781 A SER 1782 n 303 SER 1782 A ASP 1783 n 304 ASP 1783 A TRP 1784 n 305 TRP 1784 A LYS 1785 n 306 LYS 1785 A CYS 1786 n 307 CYS 1786 A LYS 1787 n 308 LYS 1787 A VAL 1788 n 309 VAL 1788 A THR 1789 n 310 THR 1789 A ASP 1790 n 311 ASP 1790 A VAL 1791 n 312 VAL 1791 A LEU 1792 n 313 LEU 1792 A PHE 1793 n 314 PHE 1793 A PRO 1794 n 315 PRO 1794 A GLY 1795 n 316 GLY 1795 A GLN 1796 n 317 GLN 1796 A LYS 1797 n 318 LYS 1797 A TYR 1798 n 319 TYR 1798 A SER 1799 n 320 SER 1799 A SER 1800 n 321 SER 1800 A ASP 1801 n 322 ASP 1801 A n 323 1802 A n 324 1803 A MET 1 n 1 MET 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B PHE 4 n 4 PHE 4 B VAL 5 n 5 VAL 5 B LYS 6 n 6 LYS 6 B THR 7 n 7 THR 7 B LEU 8 n 8 LEU 8 B THR 9 n 9 THR 9 B GLY 10 n 10 GLY 10 B LYS 11 n 11 LYS 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B THR 14 n 14 THR 14 B LEU 15 n 15 LEU 15 B GLU 16 n 16 GLU 16 B VAL 17 n 17 VAL 17 B GLU 18 n 18 GLU 18 B PRO 19 n 19 PRO 19 B SER 20 n 20 SER 20 B ASP 21 n 21 ASP 21 B THR 22 n 22 THR 22 B ILE 23 n 23 ILE 23 B GLU 24 n 24 GLU 24 B ASN 25 n 25 ASN 25 B VAL 26 n 26 VAL 26 B LYS 27 n 27 LYS 27 B ALA 28 n 28 ALA 28 B LYS 29 n 29 LYS 29 B ILE 30 n 30 ILE 30 B GLN 31 n 31 GLN 31 B ASP 32 n 32 ASP 32 B LYS 33 n 33 LYS 33 B GLU 34 n 34 GLU 34 B GLY 35 n 35 GLY 35 B ILE 36 n 36 ILE 36 B PRO 37 n 37 PRO 37 B PRO 38 n 38 PRO 38 B ASP 39 n 39 ASP 39 B GLN 40 n 40 GLN 40 B GLN 41 n 41 GLN 41 B ARG 42 n 42 ARG 42 B LEU 43 n 43 LEU 43 B ILE 44 n 44 ILE 44 B PHE 45 n 45 PHE 45 B ALA 46 n 46 ALA 46 B GLY 47 n 47 GLY 47 B LYS 48 n 48 LYS 48 B GLN 49 n 49 GLN 49 B LEU 50 n 50 LEU 50 B GLU 51 n 51 GLU 51 B ASP 52 n 52 ASP 52 B GLY 53 n 53 GLY 53 B ARG 54 n 54 ARG 54 B THR 55 n 55 THR 55 B LEU 56 n 56 LEU 56 B SER 57 n 57 SER 57 B ASP 58 n 58 ASP 58 B TYR 59 n 59 TYR 59 B ASN 60 n 60 ASN 60 B ILE 61 n 61 ILE 61 B GLN 62 n 62 GLN 62 B LYS 63 n 63 LYS 63 B GLU 64 n 64 GLU 64 B SER 65 n 65 SER 65 B THR 66 n 66 THR 66 B LEU 67 n 67 LEU 67 B HIS 68 n 68 HIS 68 B LEU 69 n 69 LEU 69 B VAL 70 n 70 VAL 70 B LEU 71 n 71 LEU 71 B ARG 72 n 72 ARG 72 B LEU 73 n 73 LEU 73 B ARG 74 n 74 ARG 74 B GLY 75 n 75 GLY 75 B author_and_software_defined_assembly PISA 2 dimeric 4220 -153 17580 A CYS 1675 A SG CYS 196 1_555 A ZN 1901 C ZN ZN 1_555 A CYS 1672 A SG CYS 193 1_555 112.0 A CYS 1675 A SG CYS 196 1_555 A ZN 1901 C ZN ZN 1_555 A CYS 1709 A SG CYS 230 1_555 98.6 A CYS 1672 A SG CYS 193 1_555 A ZN 1901 C ZN ZN 1_555 A CYS 1709 A SG CYS 230 1_555 125.7 A CYS 1675 A SG CYS 196 1_555 A ZN 1901 C ZN ZN 1_555 A CYS 1707 A SG CYS 228 1_555 98.0 A CYS 1672 A SG CYS 193 1_555 A ZN 1901 C ZN ZN 1_555 A CYS 1707 A SG CYS 228 1_555 120.5 A CYS 1709 A SG CYS 230 1_555 A ZN 1901 C ZN ZN 1_555 A CYS 1707 A SG CYS 228 1_555 96.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 1499 A O VAL 20 A N VAL 1487 A N VAL 8 A N LEU 1488 A N LEU 9 A O LEU 1535 A O LEU 56 A N VAL 1577 A N VAL 98 A O SER 1584 A O SER 105 A N LYS 1608 A N LYS 129 A O GLU 1659 A O GLU 180 A O LYS 1678 A O LYS 199 A N GLU 1670 A N GLU 191 A N VAL 1667 A N VAL 188 A O GLU 1719 A O GLU 240 A O ARG 1715 A O ARG 236 A N MET 1703 A N MET 224 A O LYS 1678 A O LYS 199 A N GLU 1670 A N GLU 191 A N VAL 1667 A N VAL 188 A O GLU 1719 A O GLU 240 A N THR 1722 A N THR 243 A O GLN 1796 A O GLN 317 A N TYR 1690 A N TYR 211 A O LEU 1726 A O LEU 247 A N LEU 1727 A N LEU 248 A O VAL 1791 A O VAL 312 A O THR 1789 A O THR 310 A N ASN 1748 A N ASN 269 A N GLN 1751 A N GLN 272 A O HIS 1759 A O HIS 280 A N HIS 1762 A N HIS 283 A O PHE 1773 A O PHE 294 A N LYS 1772 A N LYS 293 A O SER 1779 A O SER 300 B O LEU 15 B O LEU 15 B N ILE 3 B N ILE 3 B N PHE 4 B N PHE 4 B O LEU 67 B O LEU 67 B O VAL 70 B O VAL 70 B N ARG 42 B N ARG 42 B N PHE 45 B N PHE 45 B O LYS 48 B O LYS 48 1 A HOH 2026 N HOH 1 A CG1 ILE 1485 A CG1 ILE 6 1 Y 1 A CG2 ILE 1485 A CG2 ILE 6 1 Y 1 A CD1 ILE 1485 A CD1 ILE 6 1 Y 1 A CG1 VAL 1487 A CG1 VAL 8 1 Y 1 A CG2 VAL 1487 A CG2 VAL 8 1 Y 1 A CG LEU 1501 A CG LEU 22 1 Y 1 A CD1 LEU 1501 A CD1 LEU 22 1 Y 1 A CD2 LEU 1501 A CD2 LEU 22 1 Y 1 A CG LYS 1504 A CG LYS 25 1 Y 1 A CD LYS 1504 A CD LYS 25 1 Y 1 A CE LYS 1504 A CE LYS 25 1 Y 1 A NZ LYS 1504 A NZ LYS 25 1 Y 1 A OD1 ASN 1505 A OD1 ASN 26 1 Y 1 A ND2 ASN 1505 A ND2 ASN 26 1 Y 1 A CG ARG 1508 A CG ARG 29 1 Y 1 A CD ARG 1508 A CD ARG 29 1 Y 1 A NE ARG 1508 A NE ARG 29 1 Y 1 A CZ ARG 1508 A CZ ARG 29 1 Y 1 A NH1 ARG 1508 A NH1 ARG 29 1 Y 1 A NH2 ARG 1508 A NH2 ARG 29 1 Y 1 A CG GLN 1510 A CG GLN 31 1 Y 1 A CD GLN 1510 A CD GLN 31 1 Y 1 A OE1 GLN 1510 A OE1 GLN 31 1 Y 1 A NE2 GLN 1510 A NE2 GLN 31 1 Y 1 A CG ASN 1517 A CG ASN 38 1 Y 1 A OD1 ASN 1517 A OD1 ASN 38 1 Y 1 A ND2 ASN 1517 A ND2 ASN 38 1 Y 1 A CG LYS 1575 A CG LYS 96 1 Y 1 A CD LYS 1575 A CD LYS 96 1 Y 1 A CE LYS 1575 A CE LYS 96 1 Y 1 A NZ LYS 1575 A NZ LYS 96 1 Y 1 A CG ASP 1580 A CG ASP 101 1 Y 1 A OD1 ASP 1580 A OD1 ASP 101 1 Y 1 A OD2 ASP 1580 A OD2 ASP 101 1 Y 1 A CG LYS 1605 A CG LYS 126 1 Y 1 A CD LYS 1605 A CD LYS 126 1 Y 1 A CE LYS 1605 A CE LYS 126 1 Y 1 A NZ LYS 1605 A NZ LYS 126 1 Y 1 A CG LYS 1608 A CG LYS 129 1 Y 1 A CD LYS 1608 A CD LYS 129 1 Y 1 A CE LYS 1608 A CE LYS 129 1 Y 1 A NZ LYS 1608 A NZ LYS 129 1 Y 1 A CG ASP 1743 A CG ASP 264 1 Y 1 A OD1 ASP 1743 A OD1 ASP 264 1 Y 1 A OD2 ASP 1743 A OD2 ASP 264 1 Y 1 A CG LYS 1797 A CG LYS 318 1 Y 1 A CD LYS 1797 A CD LYS 318 1 Y 1 A CE LYS 1797 A CE LYS 318 1 Y 1 A NZ LYS 1797 A NZ LYS 318 1 Y 1 A OG SER 1799 A OG SER 320 1 Y 1 A OG SER 1800 A OG SER 321 1 Y 1 A CG ASP 1801 A CG ASP 322 1 Y 1 A OD1 ASP 1801 A OD1 ASP 322 1 Y 1 A OD2 ASP 1801 A OD2 ASP 322 1 Y 1 A THR 1480 A THR 1 1 Y 1 A GLN 1481 A GLN 2 1 Y 1 A GLN 1482 A GLN 3 1 Y 1 A LEU 1483 A LEU 4 1 Y 1 A CYS 1802 A CYS 323 1 Y 1 A ASN 1803 A ASN 324 1 Y 1 A VAL 1494 -127.70 -57.19 1 A ASP 1523 -142.04 15.31 1 A ASP 1527 -115.20 -145.94 1 A HIS 1533 -102.15 -168.60 1 A ASP 1580 55.06 72.13 1 A LYS 1581 45.58 22.55 1 A SER 1588 -170.97 133.74 1 A THR 1740 55.56 74.11 1 A PRO 1742 -59.55 179.16 1 A ALA 1756 -107.31 -154.60 1 A ASP 1774 -108.96 68.90 1 A THR 1789 -121.25 -77.09 1 A PRO 1794 -71.53 -169.09 1 A SER 1800 -87.33 32.27 1 B GLN 62 -101.58 -169.72 0.2810 0.2397 0.2431 2.800 44.24 1609 24491 19690 8.17 99.95 0.36 1 1.36 SAD 34.78 0.90 1.11 ML FLAT BULK SOLVENT MODEL 2.800 44.24 55 3125 50 0 3020 0.002 3123 0.539 4238 12.410 1101 0.021 491 0.003 531 0.3717 0.3158 2.8904 143 1602 100.00 0.3763 0.2989 2.9937 142 1600 100.00 0.3832 0.2877 3.1135 143 1617 100.00 0.3598 0.2997 3.2552 144 1618 100.00 0.3600 0.2913 3.4267 144 1610 100.00 0.3417 0.2737 3.6413 145 1628 100.00 0.2487 0.2455 3.9223 145 1636 100.00 0.3022 0.2372 4.3167 147 1638 100.00 0.2397 0.2023 4.9407 146 1657 100.00 0.2585 0.2194 6.2219 150 1679 100.00 0.2291 0.2187 44.2485 160 1796 100.00 2.60 44.24 4RF0 24491 24473 2 2 1 99.97 data collection MxDC phasing SOLVE refinement PHENIX 1.9_1692 data reduction XDS data scaling SCALA ORF1ab protein, Ubiquitin-60S ribosomal protein L40 Crystal structure of the Middle-East respiratory syndrome coronavirus papain-like protease in complex with ubiquitin (space group P6522) 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 5 N N 4 N N 4 N N 6 N N 6 N N A THR 1506 A THR 27 HELX_P A LEU 1511 A LEU 32 1 1 6 A THR 1542 A THR 63 HELX_P A GLY 1554 A GLY 75 1 2 13 A THR 1559 A THR 80 HELX_P A VAL 1571 A VAL 92 1 3 13 A HIS 1572 A HIS 93 HELX_P A TRP 1574 A TRP 95 5 4 3 A ASN 1591 A ASN 112 HELX_P A ASP 1602 A ASP 123 1 5 12 A ILE 1611 A ILE 132 HELX_P A LYS 1622 A LYS 143 1 6 12 A SER 1626 A SER 147 HELX_P A GLY 1637 A GLY 158 1 7 12 A ASP 1646 A ASP 167 HELX_P A ALA 1656 A ALA 177 1 8 11 A LEU 1685 A LEU 206 HELX_P A ALA 1687 A ALA 208 5 9 3 A THR 1695 A THR 216 HELX_P A ALA 1701 A ALA 222 1 10 7 B THR 22 B THR 22 HELX_P B GLY 35 B GLY 35 1 11 14 B PRO 37 B PRO 37 HELX_P B ASP 39 B ASP 39 5 12 3 metalc 2.311 A CYS 1675 A SG CYS 196 1_555 A ZN 1901 C ZN ZN 1_555 metalc 2.311 A CYS 1672 A SG CYS 193 1_555 A ZN 1901 C ZN ZN 1_555 metalc 2.311 A CYS 1709 A SG CYS 230 1_555 A ZN 1901 C ZN ZN 1_555 metalc 2.312 A CYS 1707 A SG CYS 228 1_555 A ZN 1901 C ZN ZN 1_555 covale 1.451 A CYS 1592 A SG CYS 113 1_555 B 3CN 101 K CA 3CN 1_555 covale 1.450 B GLY 75 B C GLY 75 1_555 B 3CN 101 K ND 3CN 1_555 PROTEIN BINDING zinc ribbon, deubiquitinase, papain-like protease, PROTEIN BINDING M4STU1_9BETC UNP 1 1480 M4STU1 TQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPT FLHRFYSLKAAVHGWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDSTDFIALIMAYGNC TFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQLVE HTTPWLLLSGTPNEKLVTTSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYS SDCN RL40_HUMAN UNP 2 1 P62987 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 1480 1803 4RF0 1480 1803 M4STU1 A 1 1 324 1 75 4RF0 1 75 P62987 B 2 1 75 3 2 2 4 4 7 5 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A ARG 1497 A ARG 18 A LEU 1501 A LEU 22 A ILE 1485 A ILE 6 A THR 1490 A THR 11 A SER 1534 A SER 55 A TYR 1536 A TYR 57 A MET 1576 A MET 97 A VAL 1578 A VAL 99 A ARG 1583 A ARG 104 A LEU 1585 A LEU 106 A ILE 1607 A ILE 128 A PHE 1609 A PHE 130 A ALA 1658 A ALA 179 A LEU 1660 A LEU 181 A GLY 1676 A GLY 197 A GLN 1683 A GLN 204 A ARG 1665 A ARG 186 A CYS 1672 A CYS 193 A GLU 1712 A GLU 233 A THR 1722 A THR 243 A MET 1703 A MET 224 A VAL 1706 A VAL 227 A GLY 1676 A GLY 197 A GLN 1683 A GLN 204 A ARG 1665 A ARG 186 A CYS 1672 A CYS 193 A GLU 1712 A GLU 233 A THR 1722 A THR 243 A GLN 1796 A GLN 317 A SER 1799 A SER 320 A CYS 1689 A CYS 210 A VAL 1691 A VAL 212 A LEU 1725 A LEU 246 A THR 1737 A THR 258 A ASP 1783 A ASP 304 A PHE 1793 A PHE 314 A ALA 1746 A ALA 267 A GLN 1751 A GLN 272 A HIS 1759 A HIS 280 A LYS 1766 A LYS 287 A LEU 1769 A LEU 290 A PHE 1773 A PHE 294 A VAL 1778 A VAL 299 A SER 1779 A SER 300 B THR 12 B THR 12 B GLU 16 B GLU 16 B GLN 2 B GLN 2 B LYS 6 B LYS 6 B SER 65 B SER 65 B LEU 71 B LEU 71 B GLN 41 B GLN 41 B PHE 45 B PHE 45 B LYS 48 B LYS 48 B GLN 49 B GLN 49 BINDING SITE FOR RESIDUE ZN A 1901 Software 4 BINDING SITE FOR RESIDUE SO4 A 1902 Software 3 BINDING SITE FOR RESIDUE SO4 A 1903 Software 3 BINDING SITE FOR RESIDUE SO4 A 1904 Software 5 BINDING SITE FOR RESIDUE SO4 A 1905 Software 4 BINDING SITE FOR RESIDUE SO4 A 1906 Software 7 BINDING SITE FOR RESIDUE SO4 A 1907 Software 3 BINDING SITE FOR RESIDUE SO4 A 1908 Software 3 BINDING SITE FOR RESIDUE 3CN B 101 Software 6 BINDING SITE FOR RESIDUE SO4 B 102 Software 4 BINDING SITE FOR RESIDUE SO4 B 103 Software 4 A CYS 1672 A CYS 193 4 1_555 A CYS 1675 A CYS 196 4 1_555 A CYS 1707 A CYS 228 4 1_555 A CYS 1709 A CYS 230 4 1_555 A ASN 1673 A ASN 194 3 5_555 A HIS 1714 A HIS 235 3 5_555 A HIS 1759 A HIS 280 3 1_555 A GLN 1751 A GLN 272 3 1_555 A GLY 1752 A GLY 273 3 1_555 A LYS 1787 A LYS 308 3 1_555 A GLU 1659 A GLU 180 5 1_555 A LEU 1660 A LEU 181 5 1_555 A GLY 1684 A GLY 205 5 1_555 A LEU 1685 A LEU 206 5 1_555 A LYS 1686 A LYS 207 5 1_555 A TRP 1668 A TRP 189 4 1_555 A GLU 1670 A GLU 191 4 1_555 A ARG 1715 A ARG 236 4 1_555 B ALA 46 B ALA 46 4 1_555 A HIS 1652 A HIS 173 7 1_555 A LEU 1655 A LEU 176 7 1_555 A ALA 1656 A ALA 177 7 1_555 A LYS 1686 A LYS 207 7 1_555 A CYS 1689 A CYS 210 7 1_555 A HOH 2002 N HOH 7 1_555 B LYS 48 B LYS 48 7 1_555 A VAL 1582 A VAL 103 3 1_555 A ASP 1602 A ASP 123 3 1_555 A ARG 1764 A ARG 285 3 1_555 A PHE 1515 A PHE 36 3 1_555 A TYR 1565 A TYR 86 3 1_555 A LYS 1568 A LYS 89 3 1_555 A ASN 1590 A ASN 111 6 1_555 A CYS 1592 A CYS 113 6 1_555 A ASN 1673 A ASN 194 6 5_555 A GLY 1758 A GLY 279 6 1_555 A HIS 1759 A HIS 280 6 1_555 B GLY 75 B GLY 75 6 1_555 A TYR 1705 A TYR 226 4 1_555 A ARG 1715 A ARG 236 4 1_555 B THR 66 B THR 66 4 1_555 B HIS 68 B HIS 68 4 1_555 B GLN 31 B GLN 31 4 7_556 B ASP 39 B ASP 39 4 1_555 B ARG 72 B ARG 72 4 1_555 B ARG 74 B ARG 74 4 1_555 179 P 65 2 2