0.005651
0.003262
0.000000
0.000000
0.006525
0.000000
0.000000
0.000000
0.011827
0.00000
0.00000
0.00000
Bailey-Elkin, B.A.
Johnson, G.G.
Mark, B.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
176.972
176.972
84.549
C3 H9 N
59.110
3-AMINOPROPANE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
289
34667
34682
10.1074/jbc.M114.609644
25320088
Crystal Structure of the Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Papain-like Protease Bound to Ubiquitin Facilitates Targeted Disruption of Deubiquitinating Activity to Demonstrate Its Role in Innate Immune Suppression.
2014
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.28219
1.0
08B1-1
CLSI
1.28219
SYNCHROTRON
CLSI BEAMLINE 08B1-1
36046.461
ORF1ab protein
UNP residues 1480-1803
1
man
polymer
8519.778
Ubiquitin-60S ribosomal protein L40
UNP residues 1-75
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
96.063
SULFATE ION
9
syn
non-polymer
59.110
3-AMINOPROPANE
1
syn
non-polymer
18.015
water
55
nat
water
CEP52, Ubiquitin A-52 residue ribosomal protein fusion product 1, Ubiquitin, 60S ribosomal protein L40
no
no
TQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPT
FLHRFYSLKAAVHGWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDSTDFIALIMAYGNC
TFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQLVE
HTTPWLLLSGTPNEKLVTTSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYS
SDCN
TQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPT
FLHRFYSLKAAVHGWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDSTDFIALIMAYGNC
TFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQLVE
HTTPWLLLSGTPNEKLVTTSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYS
SDCN
A
polypeptide(L)
no
no
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
ORF1ab
1306931
Human betacoronavirus 2c Jordan-N3/2012
562
Escherichia coli
human
sample
UBA52, UBCEP2
9606
Homo sapiens
562
Escherichia coli
1
4.29
71.32
VAPOR DIFFUSION, HANGING DROP
8.5
1.80 M ammonium sulphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
repository
Initial release
Database references
Database references
1
0
2014-10-22
1
1
2014-10-29
1
2
2015-01-14
RCSB
Y
RCSB
2014-09-24
REL
REL
ZN
ZINC ION
SO4
SULFATE ION
3CN
3-AMINOPROPANE
HOH
water
ZN
1
3
ZN
ZN
1901
A
SO4
2
4
SO4
SO4
1902
A
SO4
4
4
SO4
SO4
1903
A
SO4
5
4
SO4
SO4
1904
A
SO4
6
4
SO4
SO4
1905
A
SO4
7
4
SO4
SO4
1906
A
SO4
9
4
SO4
SO4
1907
A
SO4
10
4
SO4
SO4
1908
A
3CN
76
5
3CN
3CN
101
B
SO4
3
4
SO4
SO4
102
B
SO4
8
4
SO4
SO4
103
B
HOH
12
6
HOH
HOH
2001
A
HOH
14
6
HOH
HOH
2002
A
HOH
15
6
HOH
HOH
2003
A
HOH
19
6
HOH
HOH
2004
A
HOH
20
6
HOH
HOH
2005
A
HOH
21
6
HOH
HOH
2006
A
HOH
24
6
HOH
HOH
2007
A
HOH
29
6
HOH
HOH
2008
A
HOH
34
6
HOH
HOH
2009
A
HOH
35
6
HOH
HOH
2010
A
HOH
36
6
HOH
HOH
2011
A
HOH
37
6
HOH
HOH
2012
A
HOH
38
6
HOH
HOH
2013
A
HOH
40
6
HOH
HOH
2014
A
HOH
42
6
HOH
HOH
2015
A
HOH
44
6
HOH
HOH
2016
A
HOH
47
6
HOH
HOH
2017
A
HOH
48
6
HOH
HOH
2018
A
HOH
49
6
HOH
HOH
2019
A
HOH
50
6
HOH
HOH
2020
A
HOH
51
6
HOH
HOH
2021
A
HOH
52
6
HOH
HOH
2022
A
HOH
53
6
HOH
HOH
2023
A
HOH
54
6
HOH
HOH
2024
A
HOH
55
6
HOH
HOH
2025
A
HOH
56
6
HOH
HOH
2026
A
HOH
58
6
HOH
HOH
2027
A
HOH
59
6
HOH
HOH
2028
A
HOH
60
6
HOH
HOH
2029
A
HOH
61
6
HOH
HOH
2030
A
HOH
62
6
HOH
HOH
2031
A
HOH
63
6
HOH
HOH
2032
A
HOH
64
6
HOH
HOH
2033
A
HOH
66
6
HOH
HOH
2034
A
HOH
11
6
HOH
HOH
201
B
HOH
13
6
HOH
HOH
202
B
HOH
16
6
HOH
HOH
203
B
HOH
17
6
HOH
HOH
204
B
HOH
18
6
HOH
HOH
205
B
HOH
22
6
HOH
HOH
206
B
HOH
23
6
HOH
HOH
207
B
HOH
25
6
HOH
HOH
208
B
HOH
26
6
HOH
HOH
209
B
HOH
27
6
HOH
HOH
210
B
HOH
28
6
HOH
HOH
211
B
HOH
30
6
HOH
HOH
212
B
HOH
31
6
HOH
HOH
213
B
HOH
32
6
HOH
HOH
214
B
HOH
33
6
HOH
HOH
215
B
HOH
41
6
HOH
HOH
216
B
HOH
43
6
HOH
HOH
217
B
HOH
45
6
HOH
HOH
218
B
HOH
46
6
HOH
HOH
219
B
HOH
57
6
HOH
HOH
220
B
HOH
65
6
HOH
HOH
221
B
n
1
1480
A
n
2
1481
A
n
3
1482
A
n
4
1483
A
THR
1484
n
5
THR
1484
A
ILE
1485
n
6
ILE
1485
A
GLU
1486
n
7
GLU
1486
A
VAL
1487
n
8
VAL
1487
A
LEU
1488
n
9
LEU
1488
A
VAL
1489
n
10
VAL
1489
A
THR
1490
n
11
THR
1490
A
VAL
1491
n
12
VAL
1491
A
ASP
1492
n
13
ASP
1492
A
GLY
1493
n
14
GLY
1493
A
VAL
1494
n
15
VAL
1494
A
ASN
1495
n
16
ASN
1495
A
PHE
1496
n
17
PHE
1496
A
ARG
1497
n
18
ARG
1497
A
THR
1498
n
19
THR
1498
A
VAL
1499
n
20
VAL
1499
A
VAL
1500
n
21
VAL
1500
A
LEU
1501
n
22
LEU
1501
A
ASN
1502
n
23
ASN
1502
A
ASN
1503
n
24
ASN
1503
A
LYS
1504
n
25
LYS
1504
A
ASN
1505
n
26
ASN
1505
A
THR
1506
n
27
THR
1506
A
TYR
1507
n
28
TYR
1507
A
ARG
1508
n
29
ARG
1508
A
SER
1509
n
30
SER
1509
A
GLN
1510
n
31
GLN
1510
A
LEU
1511
n
32
LEU
1511
A
GLY
1512
n
33
GLY
1512
A
CYS
1513
n
34
CYS
1513
A
VAL
1514
n
35
VAL
1514
A
PHE
1515
n
36
PHE
1515
A
PHE
1516
n
37
PHE
1516
A
ASN
1517
n
38
ASN
1517
A
GLY
1518
n
39
GLY
1518
A
ALA
1519
n
40
ALA
1519
A
ASP
1520
n
41
ASP
1520
A
ILE
1521
n
42
ILE
1521
A
SER
1522
n
43
SER
1522
A
ASP
1523
n
44
ASP
1523
A
THR
1524
n
45
THR
1524
A
ILE
1525
n
46
ILE
1525
A
PRO
1526
n
47
PRO
1526
A
ASP
1527
n
48
ASP
1527
A
GLU
1528
n
49
GLU
1528
A
LYS
1529
n
50
LYS
1529
A
GLN
1530
n
51
GLN
1530
A
ASN
1531
n
52
ASN
1531
A
GLY
1532
n
53
GLY
1532
A
HIS
1533
n
54
HIS
1533
A
SER
1534
n
55
SER
1534
A
LEU
1535
n
56
LEU
1535
A
TYR
1536
n
57
TYR
1536
A
LEU
1537
n
58
LEU
1537
A
ALA
1538
n
59
ALA
1538
A
ASP
1539
n
60
ASP
1539
A
ASN
1540
n
61
ASN
1540
A
LEU
1541
n
62
LEU
1541
A
THR
1542
n
63
THR
1542
A
ALA
1543
n
64
ALA
1543
A
ASP
1544
n
65
ASP
1544
A
GLU
1545
n
66
GLU
1545
A
THR
1546
n
67
THR
1546
A
LYS
1547
n
68
LYS
1547
A
ALA
1548
n
69
ALA
1548
A
LEU
1549
n
70
LEU
1549
A
LYS
1550
n
71
LYS
1550
A
GLU
1551
n
72
GLU
1551
A
LEU
1552
n
73
LEU
1552
A
TYR
1553
n
74
TYR
1553
A
GLY
1554
n
75
GLY
1554
A
PRO
1555
n
76
PRO
1555
A
VAL
1556
n
77
VAL
1556
A
ASP
1557
n
78
ASP
1557
A
PRO
1558
n
79
PRO
1558
A
THR
1559
n
80
THR
1559
A
PHE
1560
n
81
PHE
1560
A
LEU
1561
n
82
LEU
1561
A
HIS
1562
n
83
HIS
1562
A
ARG
1563
n
84
ARG
1563
A
PHE
1564
n
85
PHE
1564
A
TYR
1565
n
86
TYR
1565
A
SER
1566
n
87
SER
1566
A
LEU
1567
n
88
LEU
1567
A
LYS
1568
n
89
LYS
1568
A
ALA
1569
n
90
ALA
1569
A
ALA
1570
n
91
ALA
1570
A
VAL
1571
n
92
VAL
1571
A
HIS
1572
n
93
HIS
1572
A
GLY
1573
n
94
GLY
1573
A
TRP
1574
n
95
TRP
1574
A
LYS
1575
n
96
LYS
1575
A
MET
1576
n
97
MET
1576
A
VAL
1577
n
98
VAL
1577
A
VAL
1578
n
99
VAL
1578
A
CYS
1579
n
100
CYS
1579
A
ASP
1580
n
101
ASP
1580
A
LYS
1581
n
102
LYS
1581
A
VAL
1582
n
103
VAL
1582
A
ARG
1583
n
104
ARG
1583
A
SER
1584
n
105
SER
1584
A
LEU
1585
n
106
LEU
1585
A
LYS
1586
n
107
LYS
1586
A
LEU
1587
n
108
LEU
1587
A
SER
1588
n
109
SER
1588
A
ASP
1589
n
110
ASP
1589
A
ASN
1590
n
111
ASN
1590
A
ASN
1591
n
112
ASN
1591
A
CYS
1592
n
113
CYS
1592
A
TYR
1593
n
114
TYR
1593
A
LEU
1594
n
115
LEU
1594
A
ASN
1595
n
116
ASN
1595
A
ALA
1596
n
117
ALA
1596
A
VAL
1597
n
118
VAL
1597
A
ILE
1598
n
119
ILE
1598
A
MET
1599
n
120
MET
1599
A
THR
1600
n
121
THR
1600
A
LEU
1601
n
122
LEU
1601
A
ASP
1602
n
123
ASP
1602
A
LEU
1603
n
124
LEU
1603
A
LEU
1604
n
125
LEU
1604
A
LYS
1605
n
126
LYS
1605
A
ASP
1606
n
127
ASP
1606
A
ILE
1607
n
128
ILE
1607
A
LYS
1608
n
129
LYS
1608
A
PHE
1609
n
130
PHE
1609
A
VAL
1610
n
131
VAL
1610
A
ILE
1611
n
132
ILE
1611
A
PRO
1612
n
133
PRO
1612
A
ALA
1613
n
134
ALA
1613
A
LEU
1614
n
135
LEU
1614
A
GLN
1615
n
136
GLN
1615
A
HIS
1616
n
137
HIS
1616
A
ALA
1617
n
138
ALA
1617
A
PHE
1618
n
139
PHE
1618
A
MET
1619
n
140
MET
1619
A
LYS
1620
n
141
LYS
1620
A
HIS
1621
n
142
HIS
1621
A
LYS
1622
n
143
LYS
1622
A
GLY
1623
n
144
GLY
1623
A
GLY
1624
n
145
GLY
1624
A
ASP
1625
n
146
ASP
1625
A
SER
1626
n
147
SER
1626
A
THR
1627
n
148
THR
1627
A
ASP
1628
n
149
ASP
1628
A
PHE
1629
n
150
PHE
1629
A
ILE
1630
n
151
ILE
1630
A
ALA
1631
n
152
ALA
1631
A
LEU
1632
n
153
LEU
1632
A
ILE
1633
n
154
ILE
1633
A
MET
1634
n
155
MET
1634
A
ALA
1635
n
156
ALA
1635
A
TYR
1636
n
157
TYR
1636
A
GLY
1637
n
158
GLY
1637
A
ASN
1638
n
159
ASN
1638
A
CYS
1639
n
160
CYS
1639
A
THR
1640
n
161
THR
1640
A
PHE
1641
n
162
PHE
1641
A
GLY
1642
n
163
GLY
1642
A
ALA
1643
n
164
ALA
1643
A
PRO
1644
n
165
PRO
1644
A
ASP
1645
n
166
ASP
1645
A
ASP
1646
n
167
ASP
1646
A
ALA
1647
n
168
ALA
1647
A
SER
1648
n
169
SER
1648
A
ARG
1649
n
170
ARG
1649
A
LEU
1650
n
171
LEU
1650
A
LEU
1651
n
172
LEU
1651
A
HIS
1652
n
173
HIS
1652
A
THR
1653
n
174
THR
1653
A
VAL
1654
n
175
VAL
1654
A
LEU
1655
n
176
LEU
1655
A
ALA
1656
n
177
ALA
1656
A
LYS
1657
n
178
LYS
1657
A
ALA
1658
n
179
ALA
1658
A
GLU
1659
n
180
GLU
1659
A
LEU
1660
n
181
LEU
1660
A
CYS
1661
n
182
CYS
1661
A
CYS
1662
n
183
CYS
1662
A
SER
1663
n
184
SER
1663
A
ALA
1664
n
185
ALA
1664
A
ARG
1665
n
186
ARG
1665
A
MET
1666
n
187
MET
1666
A
VAL
1667
n
188
VAL
1667
A
TRP
1668
n
189
TRP
1668
A
ARG
1669
n
190
ARG
1669
A
GLU
1670
n
191
GLU
1670
A
TRP
1671
n
192
TRP
1671
A
CYS
1672
n
193
CYS
1672
A
ASN
1673
n
194
ASN
1673
A
VAL
1674
n
195
VAL
1674
A
CYS
1675
n
196
CYS
1675
A
GLY
1676
n
197
GLY
1676
A
ILE
1677
n
198
ILE
1677
A
LYS
1678
n
199
LYS
1678
A
ASP
1679
n
200
ASP
1679
A
VAL
1680
n
201
VAL
1680
A
VAL
1681
n
202
VAL
1681
A
LEU
1682
n
203
LEU
1682
A
GLN
1683
n
204
GLN
1683
A
GLY
1684
n
205
GLY
1684
A
LEU
1685
n
206
LEU
1685
A
LYS
1686
n
207
LYS
1686
A
ALA
1687
n
208
ALA
1687
A
CYS
1688
n
209
CYS
1688
A
CYS
1689
n
210
CYS
1689
A
TYR
1690
n
211
TYR
1690
A
VAL
1691
n
212
VAL
1691
A
GLY
1692
n
213
GLY
1692
A
VAL
1693
n
214
VAL
1693
A
GLN
1694
n
215
GLN
1694
A
THR
1695
n
216
THR
1695
A
VAL
1696
n
217
VAL
1696
A
GLU
1697
n
218
GLU
1697
A
ASP
1698
n
219
ASP
1698
A
LEU
1699
n
220
LEU
1699
A
ARG
1700
n
221
ARG
1700
A
ALA
1701
n
222
ALA
1701
A
ARG
1702
n
223
ARG
1702
A
MET
1703
n
224
MET
1703
A
THR
1704
n
225
THR
1704
A
TYR
1705
n
226
TYR
1705
A
VAL
1706
n
227
VAL
1706
A
CYS
1707
n
228
CYS
1707
A
GLN
1708
n
229
GLN
1708
A
CYS
1709
n
230
CYS
1709
A
GLY
1710
n
231
GLY
1710
A
GLY
1711
n
232
GLY
1711
A
GLU
1712
n
233
GLU
1712
A
ARG
1713
n
234
ARG
1713
A
HIS
1714
n
235
HIS
1714
A
ARG
1715
n
236
ARG
1715
A
GLN
1716
n
237
GLN
1716
A
LEU
1717
n
238
LEU
1717
A
VAL
1718
n
239
VAL
1718
A
GLU
1719
n
240
GLU
1719
A
HIS
1720
n
241
HIS
1720
A
THR
1721
n
242
THR
1721
A
THR
1722
n
243
THR
1722
A
PRO
1723
n
244
PRO
1723
A
TRP
1724
n
245
TRP
1724
A
LEU
1725
n
246
LEU
1725
A
LEU
1726
n
247
LEU
1726
A
LEU
1727
n
248
LEU
1727
A
SER
1728
n
249
SER
1728
A
GLY
1729
n
250
GLY
1729
A
THR
1730
n
251
THR
1730
A
PRO
1731
n
252
PRO
1731
A
ASN
1732
n
253
ASN
1732
A
GLU
1733
n
254
GLU
1733
A
LYS
1734
n
255
LYS
1734
A
LEU
1735
n
256
LEU
1735
A
VAL
1736
n
257
VAL
1736
A
THR
1737
n
258
THR
1737
A
THR
1738
n
259
THR
1738
A
SER
1739
n
260
SER
1739
A
THR
1740
n
261
THR
1740
A
ALA
1741
n
262
ALA
1741
A
PRO
1742
n
263
PRO
1742
A
ASP
1743
n
264
ASP
1743
A
PHE
1744
n
265
PHE
1744
A
VAL
1745
n
266
VAL
1745
A
ALA
1746
n
267
ALA
1746
A
PHE
1747
n
268
PHE
1747
A
ASN
1748
n
269
ASN
1748
A
VAL
1749
n
270
VAL
1749
A
PHE
1750
n
271
PHE
1750
A
GLN
1751
n
272
GLN
1751
A
GLY
1752
n
273
GLY
1752
A
ILE
1753
n
274
ILE
1753
A
GLU
1754
n
275
GLU
1754
A
THR
1755
n
276
THR
1755
A
ALA
1756
n
277
ALA
1756
A
VAL
1757
n
278
VAL
1757
A
GLY
1758
n
279
GLY
1758
A
HIS
1759
n
280
HIS
1759
A
TYR
1760
n
281
TYR
1760
A
VAL
1761
n
282
VAL
1761
A
HIS
1762
n
283
HIS
1762
A
ALA
1763
n
284
ALA
1763
A
ARG
1764
n
285
ARG
1764
A
LEU
1765
n
286
LEU
1765
A
LYS
1766
n
287
LYS
1766
A
GLY
1767
n
288
GLY
1767
A
GLY
1768
n
289
GLY
1768
A
LEU
1769
n
290
LEU
1769
A
ILE
1770
n
291
ILE
1770
A
LEU
1771
n
292
LEU
1771
A
LYS
1772
n
293
LYS
1772
A
PHE
1773
n
294
PHE
1773
A
ASP
1774
n
295
ASP
1774
A
SER
1775
n
296
SER
1775
A
GLY
1776
n
297
GLY
1776
A
THR
1777
n
298
THR
1777
A
VAL
1778
n
299
VAL
1778
A
SER
1779
n
300
SER
1779
A
LYS
1780
n
301
LYS
1780
A
THR
1781
n
302
THR
1781
A
SER
1782
n
303
SER
1782
A
ASP
1783
n
304
ASP
1783
A
TRP
1784
n
305
TRP
1784
A
LYS
1785
n
306
LYS
1785
A
CYS
1786
n
307
CYS
1786
A
LYS
1787
n
308
LYS
1787
A
VAL
1788
n
309
VAL
1788
A
THR
1789
n
310
THR
1789
A
ASP
1790
n
311
ASP
1790
A
VAL
1791
n
312
VAL
1791
A
LEU
1792
n
313
LEU
1792
A
PHE
1793
n
314
PHE
1793
A
PRO
1794
n
315
PRO
1794
A
GLY
1795
n
316
GLY
1795
A
GLN
1796
n
317
GLN
1796
A
LYS
1797
n
318
LYS
1797
A
TYR
1798
n
319
TYR
1798
A
SER
1799
n
320
SER
1799
A
SER
1800
n
321
SER
1800
A
ASP
1801
n
322
ASP
1801
A
n
323
1802
A
n
324
1803
A
MET
1
n
1
MET
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
PHE
4
n
4
PHE
4
B
VAL
5
n
5
VAL
5
B
LYS
6
n
6
LYS
6
B
THR
7
n
7
THR
7
B
LEU
8
n
8
LEU
8
B
THR
9
n
9
THR
9
B
GLY
10
n
10
GLY
10
B
LYS
11
n
11
LYS
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
THR
14
n
14
THR
14
B
LEU
15
n
15
LEU
15
B
GLU
16
n
16
GLU
16
B
VAL
17
n
17
VAL
17
B
GLU
18
n
18
GLU
18
B
PRO
19
n
19
PRO
19
B
SER
20
n
20
SER
20
B
ASP
21
n
21
ASP
21
B
THR
22
n
22
THR
22
B
ILE
23
n
23
ILE
23
B
GLU
24
n
24
GLU
24
B
ASN
25
n
25
ASN
25
B
VAL
26
n
26
VAL
26
B
LYS
27
n
27
LYS
27
B
ALA
28
n
28
ALA
28
B
LYS
29
n
29
LYS
29
B
ILE
30
n
30
ILE
30
B
GLN
31
n
31
GLN
31
B
ASP
32
n
32
ASP
32
B
LYS
33
n
33
LYS
33
B
GLU
34
n
34
GLU
34
B
GLY
35
n
35
GLY
35
B
ILE
36
n
36
ILE
36
B
PRO
37
n
37
PRO
37
B
PRO
38
n
38
PRO
38
B
ASP
39
n
39
ASP
39
B
GLN
40
n
40
GLN
40
B
GLN
41
n
41
GLN
41
B
ARG
42
n
42
ARG
42
B
LEU
43
n
43
LEU
43
B
ILE
44
n
44
ILE
44
B
PHE
45
n
45
PHE
45
B
ALA
46
n
46
ALA
46
B
GLY
47
n
47
GLY
47
B
LYS
48
n
48
LYS
48
B
GLN
49
n
49
GLN
49
B
LEU
50
n
50
LEU
50
B
GLU
51
n
51
GLU
51
B
ASP
52
n
52
ASP
52
B
GLY
53
n
53
GLY
53
B
ARG
54
n
54
ARG
54
B
THR
55
n
55
THR
55
B
LEU
56
n
56
LEU
56
B
SER
57
n
57
SER
57
B
ASP
58
n
58
ASP
58
B
TYR
59
n
59
TYR
59
B
ASN
60
n
60
ASN
60
B
ILE
61
n
61
ILE
61
B
GLN
62
n
62
GLN
62
B
LYS
63
n
63
LYS
63
B
GLU
64
n
64
GLU
64
B
SER
65
n
65
SER
65
B
THR
66
n
66
THR
66
B
LEU
67
n
67
LEU
67
B
HIS
68
n
68
HIS
68
B
LEU
69
n
69
LEU
69
B
VAL
70
n
70
VAL
70
B
LEU
71
n
71
LEU
71
B
ARG
72
n
72
ARG
72
B
LEU
73
n
73
LEU
73
B
ARG
74
n
74
ARG
74
B
GLY
75
n
75
GLY
75
B
author_and_software_defined_assembly
PISA
2
dimeric
4220
-153
17580
A
CYS
1675
A
SG
CYS
196
1_555
A
ZN
1901
C
ZN
ZN
1_555
A
CYS
1672
A
SG
CYS
193
1_555
112.0
A
CYS
1675
A
SG
CYS
196
1_555
A
ZN
1901
C
ZN
ZN
1_555
A
CYS
1709
A
SG
CYS
230
1_555
98.6
A
CYS
1672
A
SG
CYS
193
1_555
A
ZN
1901
C
ZN
ZN
1_555
A
CYS
1709
A
SG
CYS
230
1_555
125.7
A
CYS
1675
A
SG
CYS
196
1_555
A
ZN
1901
C
ZN
ZN
1_555
A
CYS
1707
A
SG
CYS
228
1_555
98.0
A
CYS
1672
A
SG
CYS
193
1_555
A
ZN
1901
C
ZN
ZN
1_555
A
CYS
1707
A
SG
CYS
228
1_555
120.5
A
CYS
1709
A
SG
CYS
230
1_555
A
ZN
1901
C
ZN
ZN
1_555
A
CYS
1707
A
SG
CYS
228
1_555
96.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
1499
A
O
VAL
20
A
N
VAL
1487
A
N
VAL
8
A
N
LEU
1488
A
N
LEU
9
A
O
LEU
1535
A
O
LEU
56
A
N
VAL
1577
A
N
VAL
98
A
O
SER
1584
A
O
SER
105
A
N
LYS
1608
A
N
LYS
129
A
O
GLU
1659
A
O
GLU
180
A
O
LYS
1678
A
O
LYS
199
A
N
GLU
1670
A
N
GLU
191
A
N
VAL
1667
A
N
VAL
188
A
O
GLU
1719
A
O
GLU
240
A
O
ARG
1715
A
O
ARG
236
A
N
MET
1703
A
N
MET
224
A
O
LYS
1678
A
O
LYS
199
A
N
GLU
1670
A
N
GLU
191
A
N
VAL
1667
A
N
VAL
188
A
O
GLU
1719
A
O
GLU
240
A
N
THR
1722
A
N
THR
243
A
O
GLN
1796
A
O
GLN
317
A
N
TYR
1690
A
N
TYR
211
A
O
LEU
1726
A
O
LEU
247
A
N
LEU
1727
A
N
LEU
248
A
O
VAL
1791
A
O
VAL
312
A
O
THR
1789
A
O
THR
310
A
N
ASN
1748
A
N
ASN
269
A
N
GLN
1751
A
N
GLN
272
A
O
HIS
1759
A
O
HIS
280
A
N
HIS
1762
A
N
HIS
283
A
O
PHE
1773
A
O
PHE
294
A
N
LYS
1772
A
N
LYS
293
A
O
SER
1779
A
O
SER
300
B
O
LEU
15
B
O
LEU
15
B
N
ILE
3
B
N
ILE
3
B
N
PHE
4
B
N
PHE
4
B
O
LEU
67
B
O
LEU
67
B
O
VAL
70
B
O
VAL
70
B
N
ARG
42
B
N
ARG
42
B
N
PHE
45
B
N
PHE
45
B
O
LYS
48
B
O
LYS
48
1
A
HOH
2026
N
HOH
1
A
CG1
ILE
1485
A
CG1
ILE
6
1
Y
1
A
CG2
ILE
1485
A
CG2
ILE
6
1
Y
1
A
CD1
ILE
1485
A
CD1
ILE
6
1
Y
1
A
CG1
VAL
1487
A
CG1
VAL
8
1
Y
1
A
CG2
VAL
1487
A
CG2
VAL
8
1
Y
1
A
CG
LEU
1501
A
CG
LEU
22
1
Y
1
A
CD1
LEU
1501
A
CD1
LEU
22
1
Y
1
A
CD2
LEU
1501
A
CD2
LEU
22
1
Y
1
A
CG
LYS
1504
A
CG
LYS
25
1
Y
1
A
CD
LYS
1504
A
CD
LYS
25
1
Y
1
A
CE
LYS
1504
A
CE
LYS
25
1
Y
1
A
NZ
LYS
1504
A
NZ
LYS
25
1
Y
1
A
OD1
ASN
1505
A
OD1
ASN
26
1
Y
1
A
ND2
ASN
1505
A
ND2
ASN
26
1
Y
1
A
CG
ARG
1508
A
CG
ARG
29
1
Y
1
A
CD
ARG
1508
A
CD
ARG
29
1
Y
1
A
NE
ARG
1508
A
NE
ARG
29
1
Y
1
A
CZ
ARG
1508
A
CZ
ARG
29
1
Y
1
A
NH1
ARG
1508
A
NH1
ARG
29
1
Y
1
A
NH2
ARG
1508
A
NH2
ARG
29
1
Y
1
A
CG
GLN
1510
A
CG
GLN
31
1
Y
1
A
CD
GLN
1510
A
CD
GLN
31
1
Y
1
A
OE1
GLN
1510
A
OE1
GLN
31
1
Y
1
A
NE2
GLN
1510
A
NE2
GLN
31
1
Y
1
A
CG
ASN
1517
A
CG
ASN
38
1
Y
1
A
OD1
ASN
1517
A
OD1
ASN
38
1
Y
1
A
ND2
ASN
1517
A
ND2
ASN
38
1
Y
1
A
CG
LYS
1575
A
CG
LYS
96
1
Y
1
A
CD
LYS
1575
A
CD
LYS
96
1
Y
1
A
CE
LYS
1575
A
CE
LYS
96
1
Y
1
A
NZ
LYS
1575
A
NZ
LYS
96
1
Y
1
A
CG
ASP
1580
A
CG
ASP
101
1
Y
1
A
OD1
ASP
1580
A
OD1
ASP
101
1
Y
1
A
OD2
ASP
1580
A
OD2
ASP
101
1
Y
1
A
CG
LYS
1605
A
CG
LYS
126
1
Y
1
A
CD
LYS
1605
A
CD
LYS
126
1
Y
1
A
CE
LYS
1605
A
CE
LYS
126
1
Y
1
A
NZ
LYS
1605
A
NZ
LYS
126
1
Y
1
A
CG
LYS
1608
A
CG
LYS
129
1
Y
1
A
CD
LYS
1608
A
CD
LYS
129
1
Y
1
A
CE
LYS
1608
A
CE
LYS
129
1
Y
1
A
NZ
LYS
1608
A
NZ
LYS
129
1
Y
1
A
CG
ASP
1743
A
CG
ASP
264
1
Y
1
A
OD1
ASP
1743
A
OD1
ASP
264
1
Y
1
A
OD2
ASP
1743
A
OD2
ASP
264
1
Y
1
A
CG
LYS
1797
A
CG
LYS
318
1
Y
1
A
CD
LYS
1797
A
CD
LYS
318
1
Y
1
A
CE
LYS
1797
A
CE
LYS
318
1
Y
1
A
NZ
LYS
1797
A
NZ
LYS
318
1
Y
1
A
OG
SER
1799
A
OG
SER
320
1
Y
1
A
OG
SER
1800
A
OG
SER
321
1
Y
1
A
CG
ASP
1801
A
CG
ASP
322
1
Y
1
A
OD1
ASP
1801
A
OD1
ASP
322
1
Y
1
A
OD2
ASP
1801
A
OD2
ASP
322
1
Y
1
A
THR
1480
A
THR
1
1
Y
1
A
GLN
1481
A
GLN
2
1
Y
1
A
GLN
1482
A
GLN
3
1
Y
1
A
LEU
1483
A
LEU
4
1
Y
1
A
CYS
1802
A
CYS
323
1
Y
1
A
ASN
1803
A
ASN
324
1
Y
1
A
VAL
1494
-127.70
-57.19
1
A
ASP
1523
-142.04
15.31
1
A
ASP
1527
-115.20
-145.94
1
A
HIS
1533
-102.15
-168.60
1
A
ASP
1580
55.06
72.13
1
A
LYS
1581
45.58
22.55
1
A
SER
1588
-170.97
133.74
1
A
THR
1740
55.56
74.11
1
A
PRO
1742
-59.55
179.16
1
A
ALA
1756
-107.31
-154.60
1
A
ASP
1774
-108.96
68.90
1
A
THR
1789
-121.25
-77.09
1
A
PRO
1794
-71.53
-169.09
1
A
SER
1800
-87.33
32.27
1
B
GLN
62
-101.58
-169.72
0.2810
0.2397
0.2431
2.800
44.24
1609
24491
19690
8.17
99.95
0.36
1
1.36
SAD
34.78
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
2.800
44.24
55
3125
50
0
3020
0.002
3123
0.539
4238
12.410
1101
0.021
491
0.003
531
0.3717
0.3158
2.8904
143
1602
100.00
0.3763
0.2989
2.9937
142
1600
100.00
0.3832
0.2877
3.1135
143
1617
100.00
0.3598
0.2997
3.2552
144
1618
100.00
0.3600
0.2913
3.4267
144
1610
100.00
0.3417
0.2737
3.6413
145
1628
100.00
0.2487
0.2455
3.9223
145
1636
100.00
0.3022
0.2372
4.3167
147
1638
100.00
0.2397
0.2023
4.9407
146
1657
100.00
0.2585
0.2194
6.2219
150
1679
100.00
0.2291
0.2187
44.2485
160
1796
100.00
2.60
44.24
4RF0
24491
24473
2
2
1
99.97
data collection
MxDC
phasing
SOLVE
refinement
PHENIX
1.9_1692
data reduction
XDS
data scaling
SCALA
ORF1ab protein, Ubiquitin-60S ribosomal protein L40
Crystal structure of the Middle-East respiratory syndrome coronavirus papain-like protease in complex with ubiquitin (space group P6522)
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
4
N
N
4
N
N
6
N
N
6
N
N
A
THR
1506
A
THR
27
HELX_P
A
LEU
1511
A
LEU
32
1
1
6
A
THR
1542
A
THR
63
HELX_P
A
GLY
1554
A
GLY
75
1
2
13
A
THR
1559
A
THR
80
HELX_P
A
VAL
1571
A
VAL
92
1
3
13
A
HIS
1572
A
HIS
93
HELX_P
A
TRP
1574
A
TRP
95
5
4
3
A
ASN
1591
A
ASN
112
HELX_P
A
ASP
1602
A
ASP
123
1
5
12
A
ILE
1611
A
ILE
132
HELX_P
A
LYS
1622
A
LYS
143
1
6
12
A
SER
1626
A
SER
147
HELX_P
A
GLY
1637
A
GLY
158
1
7
12
A
ASP
1646
A
ASP
167
HELX_P
A
ALA
1656
A
ALA
177
1
8
11
A
LEU
1685
A
LEU
206
HELX_P
A
ALA
1687
A
ALA
208
5
9
3
A
THR
1695
A
THR
216
HELX_P
A
ALA
1701
A
ALA
222
1
10
7
B
THR
22
B
THR
22
HELX_P
B
GLY
35
B
GLY
35
1
11
14
B
PRO
37
B
PRO
37
HELX_P
B
ASP
39
B
ASP
39
5
12
3
metalc
2.311
A
CYS
1675
A
SG
CYS
196
1_555
A
ZN
1901
C
ZN
ZN
1_555
metalc
2.311
A
CYS
1672
A
SG
CYS
193
1_555
A
ZN
1901
C
ZN
ZN
1_555
metalc
2.311
A
CYS
1709
A
SG
CYS
230
1_555
A
ZN
1901
C
ZN
ZN
1_555
metalc
2.312
A
CYS
1707
A
SG
CYS
228
1_555
A
ZN
1901
C
ZN
ZN
1_555
covale
1.451
A
CYS
1592
A
SG
CYS
113
1_555
B
3CN
101
K
CA
3CN
1_555
covale
1.450
B
GLY
75
B
C
GLY
75
1_555
B
3CN
101
K
ND
3CN
1_555
PROTEIN BINDING
zinc ribbon, deubiquitinase, papain-like protease, PROTEIN BINDING
M4STU1_9BETC
UNP
1
1480
M4STU1
TQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPT
FLHRFYSLKAAVHGWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDSTDFIALIMAYGNC
TFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQLVE
HTTPWLLLSGTPNEKLVTTSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYS
SDCN
RL40_HUMAN
UNP
2
1
P62987
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
1480
1803
4RF0
1480
1803
M4STU1
A
1
1
324
1
75
4RF0
1
75
P62987
B
2
1
75
3
2
2
4
4
7
5
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ARG
1497
A
ARG
18
A
LEU
1501
A
LEU
22
A
ILE
1485
A
ILE
6
A
THR
1490
A
THR
11
A
SER
1534
A
SER
55
A
TYR
1536
A
TYR
57
A
MET
1576
A
MET
97
A
VAL
1578
A
VAL
99
A
ARG
1583
A
ARG
104
A
LEU
1585
A
LEU
106
A
ILE
1607
A
ILE
128
A
PHE
1609
A
PHE
130
A
ALA
1658
A
ALA
179
A
LEU
1660
A
LEU
181
A
GLY
1676
A
GLY
197
A
GLN
1683
A
GLN
204
A
ARG
1665
A
ARG
186
A
CYS
1672
A
CYS
193
A
GLU
1712
A
GLU
233
A
THR
1722
A
THR
243
A
MET
1703
A
MET
224
A
VAL
1706
A
VAL
227
A
GLY
1676
A
GLY
197
A
GLN
1683
A
GLN
204
A
ARG
1665
A
ARG
186
A
CYS
1672
A
CYS
193
A
GLU
1712
A
GLU
233
A
THR
1722
A
THR
243
A
GLN
1796
A
GLN
317
A
SER
1799
A
SER
320
A
CYS
1689
A
CYS
210
A
VAL
1691
A
VAL
212
A
LEU
1725
A
LEU
246
A
THR
1737
A
THR
258
A
ASP
1783
A
ASP
304
A
PHE
1793
A
PHE
314
A
ALA
1746
A
ALA
267
A
GLN
1751
A
GLN
272
A
HIS
1759
A
HIS
280
A
LYS
1766
A
LYS
287
A
LEU
1769
A
LEU
290
A
PHE
1773
A
PHE
294
A
VAL
1778
A
VAL
299
A
SER
1779
A
SER
300
B
THR
12
B
THR
12
B
GLU
16
B
GLU
16
B
GLN
2
B
GLN
2
B
LYS
6
B
LYS
6
B
SER
65
B
SER
65
B
LEU
71
B
LEU
71
B
GLN
41
B
GLN
41
B
PHE
45
B
PHE
45
B
LYS
48
B
LYS
48
B
GLN
49
B
GLN
49
BINDING SITE FOR RESIDUE ZN A 1901
Software
4
BINDING SITE FOR RESIDUE SO4 A 1902
Software
3
BINDING SITE FOR RESIDUE SO4 A 1903
Software
3
BINDING SITE FOR RESIDUE SO4 A 1904
Software
5
BINDING SITE FOR RESIDUE SO4 A 1905
Software
4
BINDING SITE FOR RESIDUE SO4 A 1906
Software
7
BINDING SITE FOR RESIDUE SO4 A 1907
Software
3
BINDING SITE FOR RESIDUE SO4 A 1908
Software
3
BINDING SITE FOR RESIDUE 3CN B 101
Software
6
BINDING SITE FOR RESIDUE SO4 B 102
Software
4
BINDING SITE FOR RESIDUE SO4 B 103
Software
4
A
CYS
1672
A
CYS
193
4
1_555
A
CYS
1675
A
CYS
196
4
1_555
A
CYS
1707
A
CYS
228
4
1_555
A
CYS
1709
A
CYS
230
4
1_555
A
ASN
1673
A
ASN
194
3
5_555
A
HIS
1714
A
HIS
235
3
5_555
A
HIS
1759
A
HIS
280
3
1_555
A
GLN
1751
A
GLN
272
3
1_555
A
GLY
1752
A
GLY
273
3
1_555
A
LYS
1787
A
LYS
308
3
1_555
A
GLU
1659
A
GLU
180
5
1_555
A
LEU
1660
A
LEU
181
5
1_555
A
GLY
1684
A
GLY
205
5
1_555
A
LEU
1685
A
LEU
206
5
1_555
A
LYS
1686
A
LYS
207
5
1_555
A
TRP
1668
A
TRP
189
4
1_555
A
GLU
1670
A
GLU
191
4
1_555
A
ARG
1715
A
ARG
236
4
1_555
B
ALA
46
B
ALA
46
4
1_555
A
HIS
1652
A
HIS
173
7
1_555
A
LEU
1655
A
LEU
176
7
1_555
A
ALA
1656
A
ALA
177
7
1_555
A
LYS
1686
A
LYS
207
7
1_555
A
CYS
1689
A
CYS
210
7
1_555
A
HOH
2002
N
HOH
7
1_555
B
LYS
48
B
LYS
48
7
1_555
A
VAL
1582
A
VAL
103
3
1_555
A
ASP
1602
A
ASP
123
3
1_555
A
ARG
1764
A
ARG
285
3
1_555
A
PHE
1515
A
PHE
36
3
1_555
A
TYR
1565
A
TYR
86
3
1_555
A
LYS
1568
A
LYS
89
3
1_555
A
ASN
1590
A
ASN
111
6
1_555
A
CYS
1592
A
CYS
113
6
1_555
A
ASN
1673
A
ASN
194
6
5_555
A
GLY
1758
A
GLY
279
6
1_555
A
HIS
1759
A
HIS
280
6
1_555
B
GLY
75
B
GLY
75
6
1_555
A
TYR
1705
A
TYR
226
4
1_555
A
ARG
1715
A
ARG
236
4
1_555
B
THR
66
B
THR
66
4
1_555
B
HIS
68
B
HIS
68
4
1_555
B
GLN
31
B
GLN
31
4
7_556
B
ASP
39
B
ASP
39
4
1_555
B
ARG
72
B
ARG
72
4
1_555
B
ARG
74
B
ARG
74
4
1_555
179
P 65 2 2