0.017947
0.000000
0.006152
0.000000
0.018550
0.000000
0.000000
0.000000
0.014368
0.00000
0.00000
0.00000
Nicely, N.I.
Wiehe, K.
Kepler, T.B.
Jaeger, F.H.
Dennison, S.M.
Liao, H.-X.
Alam, S.M.
Hwang, K.-K.
Bonsignori, M.
Rerks-Ngarm, S.
Nitayaphan, S.
Pitisuttithum, P.
Kaewkungwal, J.
Robb, M.L.
O'Connell, R.J.
Michael, N.L.
Kim, J.H.
Haynes, B.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
108.92
90.00
55.719
53.908
73.573
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
EBioMedicine
2352-3964
2
713
722
10.1016/j.ebiom.2015.06.016
26288844
Structural analysis of the unmutated ancestor of the HIV-1 envelope V2 region antibody CH58 isolated from an RV144 vaccine efficacy trial vaccinee.
2015
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93
1
CCD
2013-06-23
MARMOSAIC 225 mm CCD
double crystal - liquid nitrogen cooled
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
22-BM
APS
1.0
SYNCHROTRON
APS BEAMLINE 22-BM
2136.538
Envelope glycoprotein
HIV-1 gp120 derived peptide (UNP residues 160-177)
1
syn
polymer
24949.910
CH58-UA Fab heavy chain
1
man
polymer
23170.354
CH58-UA Fab light chain
1
man
polymer
18.015
water
233
nat
water
no
no
LRDKKQKVHALFYKADAV
LRDKKQKVHALFYKADAV
P
polypeptide(L)
no
no
EVQLVQSGAEVKKPGESLKISCKGSGYSFTSYWIGWVRQMPGKGLEWMGIIYPGDSDTRYSPSFQGQVTISADKSISTAY
LQWSSLKASDTAMYYCARLGGRYYYDSSGYYYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP
EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
EVQLVQSGAEVKKPGESLKISCKGSGYSFTSYWIGWVRQMPGKGLEWMGIIYPGDSDTRYSPSFQGQVTISADKSISTAY
LQWSSLKASDTAMYYCARLGGRYYYDSSGYYYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP
EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
H
polypeptide(L)
no
no
NFMLTQPHSVSESPGKTVTISCTRSSGSIASNYVQWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISG
LKTEDEADYYCQSYDSSSWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK
AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
NFMLTQPHSVSESPGKTVTISCTRSSGSIASNYVQWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISG
LKTEDEADYYCQSYDSSSWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK
AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
L
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
9606
Homo sapiens
expi293
9606
Homo sapiens
sample
9606
Homo sapiens
expi293
9606
Homo sapiens
1
2.08
40.86
VAPOR DIFFUSION, SITTING DROP
7.0
A drop composed of 0.2 ul protein and 0.4 ul well. the well contains 60 ul of 0.2 M calcium acetate hydrate, 20% PEG 3350, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
repository
Initial release
Database references
1
0
2015-08-12
1
1
2015-09-02
RCSB
Y
RCSB
2014-10-07
REL
REL
HOH
water
11676
Human immunodeficiency virus 1
sample
THE PEPTIDE WAS DERIVED FROM THE GP120 V2 REGION SEQUENCE WITH THE TWO NOTED ALANINE RESIDUES AS SUBSTITUTIONS.
HOH
12
4
HOH
HOH
201
P
HOH
49
4
HOH
HOH
202
P
HOH
101
4
HOH
HOH
203
P
HOH
110
4
HOH
HOH
204
P
HOH
139
4
HOH
HOH
205
P
HOH
158
4
HOH
HOH
206
P
HOH
193
4
HOH
HOH
207
P
HOH
214
4
HOH
HOH
208
P
HOH
234
4
HOH
HOH
209
P
HOH
3
4
HOH
HOH
301
H
HOH
4
4
HOH
HOH
302
H
HOH
14
4
HOH
HOH
303
H
HOH
15
4
HOH
HOH
304
H
HOH
17
4
HOH
HOH
305
H
HOH
20
4
HOH
HOH
306
H
HOH
22
4
HOH
HOH
307
H
HOH
28
4
HOH
HOH
308
H
HOH
29
4
HOH
HOH
309
H
HOH
33
4
HOH
HOH
310
H
HOH
36
4
HOH
HOH
311
H
HOH
37
4
HOH
HOH
312
H
HOH
40
4
HOH
HOH
313
H
HOH
41
4
HOH
HOH
314
H
HOH
42
4
HOH
HOH
315
H
HOH
46
4
HOH
HOH
316
H
HOH
48
4
HOH
HOH
317
H
HOH
50
4
HOH
HOH
318
H
HOH
57
4
HOH
HOH
319
H
HOH
66
4
HOH
HOH
320
H
HOH
68
4
HOH
HOH
321
H
HOH
70
4
HOH
HOH
322
H
HOH
74
4
HOH
HOH
323
H
HOH
75
4
HOH
HOH
324
H
HOH
76
4
HOH
HOH
325
H
HOH
79
4
HOH
HOH
326
H
HOH
80
4
HOH
HOH
327
H
HOH
83
4
HOH
HOH
328
H
HOH
85
4
HOH
HOH
329
H
HOH
87
4
HOH
HOH
330
H
HOH
88
4
HOH
HOH
331
H
HOH
89
4
HOH
HOH
332
H
HOH
92
4
HOH
HOH
333
H
HOH
94
4
HOH
HOH
334
H
HOH
95
4
HOH
HOH
335
H
HOH
98
4
HOH
HOH
336
H
HOH
100
4
HOH
HOH
337
H
HOH
106
4
HOH
HOH
338
H
HOH
111
4
HOH
HOH
339
H
HOH
113
4
HOH
HOH
340
H
HOH
119
4
HOH
HOH
341
H
HOH
120
4
HOH
HOH
342
H
HOH
122
4
HOH
HOH
343
H
HOH
125
4
HOH
HOH
344
H
HOH
126
4
HOH
HOH
345
H
HOH
130
4
HOH
HOH
346
H
HOH
131
4
HOH
HOH
347
H
HOH
134
4
HOH
HOH
348
H
HOH
135
4
HOH
HOH
349
H
HOH
136
4
HOH
HOH
350
H
HOH
138
4
HOH
HOH
351
H
HOH
140
4
HOH
HOH
352
H
HOH
143
4
HOH
HOH
353
H
HOH
144
4
HOH
HOH
354
H
HOH
146
4
HOH
HOH
355
H
HOH
149
4
HOH
HOH
356
H
HOH
150
4
HOH
HOH
357
H
HOH
151
4
HOH
HOH
358
H
HOH
152
4
HOH
HOH
359
H
HOH
156
4
HOH
HOH
360
H
HOH
159
4
HOH
HOH
361
H
HOH
161
4
HOH
HOH
362
H
HOH
164
4
HOH
HOH
363
H
HOH
165
4
HOH
HOH
364
H
HOH
166
4
HOH
HOH
365
H
HOH
168
4
HOH
HOH
366
H
HOH
172
4
HOH
HOH
367
H
HOH
176
4
HOH
HOH
368
H
HOH
177
4
HOH
HOH
369
H
HOH
179
4
HOH
HOH
370
H
HOH
180
4
HOH
HOH
371
H
HOH
184
4
HOH
HOH
372
H
HOH
185
4
HOH
HOH
373
H
HOH
186
4
HOH
HOH
374
H
HOH
187
4
HOH
HOH
375
H
HOH
189
4
HOH
HOH
376
H
HOH
195
4
HOH
HOH
377
H
HOH
202
4
HOH
HOH
378
H
HOH
203
4
HOH
HOH
379
H
HOH
205
4
HOH
HOH
380
H
HOH
209
4
HOH
HOH
381
H
HOH
215
4
HOH
HOH
382
H
HOH
217
4
HOH
HOH
383
H
HOH
218
4
HOH
HOH
384
H
HOH
223
4
HOH
HOH
385
H
HOH
224
4
HOH
HOH
386
H
HOH
228
4
HOH
HOH
387
H
HOH
237
4
HOH
HOH
388
H
HOH
1
4
HOH
HOH
301
L
HOH
2
4
HOH
HOH
302
L
HOH
5
4
HOH
HOH
303
L
HOH
6
4
HOH
HOH
304
L
HOH
7
4
HOH
HOH
305
L
HOH
8
4
HOH
HOH
306
L
HOH
9
4
HOH
HOH
307
L
HOH
10
4
HOH
HOH
308
L
HOH
11
4
HOH
HOH
309
L
HOH
13
4
HOH
HOH
310
L
HOH
16
4
HOH
HOH
311
L
HOH
18
4
HOH
HOH
312
L
HOH
19
4
HOH
HOH
313
L
HOH
21
4
HOH
HOH
314
L
HOH
23
4
HOH
HOH
315
L
HOH
24
4
HOH
HOH
316
L
HOH
25
4
HOH
HOH
317
L
HOH
26
4
HOH
HOH
318
L
HOH
27
4
HOH
HOH
319
L
HOH
30
4
HOH
HOH
320
L
HOH
31
4
HOH
HOH
321
L
HOH
32
4
HOH
HOH
322
L
HOH
34
4
HOH
HOH
323
L
HOH
35
4
HOH
HOH
324
L
HOH
38
4
HOH
HOH
325
L
HOH
39
4
HOH
HOH
326
L
HOH
44
4
HOH
HOH
327
L
HOH
45
4
HOH
HOH
328
L
HOH
47
4
HOH
HOH
329
L
HOH
51
4
HOH
HOH
330
L
HOH
52
4
HOH
HOH
331
L
HOH
53
4
HOH
HOH
332
L
HOH
54
4
HOH
HOH
333
L
HOH
55
4
HOH
HOH
334
L
HOH
56
4
HOH
HOH
335
L
HOH
58
4
HOH
HOH
336
L
HOH
59
4
HOH
HOH
337
L
HOH
60
4
HOH
HOH
338
L
HOH
62
4
HOH
HOH
339
L
HOH
63
4
HOH
HOH
340
L
HOH
64
4
HOH
HOH
341
L
HOH
65
4
HOH
HOH
342
L
HOH
67
4
HOH
HOH
343
L
HOH
69
4
HOH
HOH
344
L
HOH
71
4
HOH
HOH
345
L
HOH
72
4
HOH
HOH
346
L
HOH
73
4
HOH
HOH
347
L
HOH
77
4
HOH
HOH
348
L
HOH
78
4
HOH
HOH
349
L
HOH
81
4
HOH
HOH
350
L
HOH
82
4
HOH
HOH
351
L
HOH
84
4
HOH
HOH
352
L
HOH
86
4
HOH
HOH
353
L
HOH
90
4
HOH
HOH
354
L
HOH
91
4
HOH
HOH
355
L
HOH
93
4
HOH
HOH
356
L
HOH
96
4
HOH
HOH
357
L
HOH
97
4
HOH
HOH
358
L
HOH
99
4
HOH
HOH
359
L
HOH
102
4
HOH
HOH
360
L
HOH
103
4
HOH
HOH
361
L
HOH
104
4
HOH
HOH
362
L
HOH
105
4
HOH
HOH
363
L
HOH
107
4
HOH
HOH
364
L
HOH
108
4
HOH
HOH
365
L
HOH
109
4
HOH
HOH
366
L
HOH
112
4
HOH
HOH
367
L
HOH
114
4
HOH
HOH
368
L
HOH
115
4
HOH
HOH
369
L
HOH
116
4
HOH
HOH
370
L
HOH
117
4
HOH
HOH
371
L
HOH
118
4
HOH
HOH
372
L
HOH
121
4
HOH
HOH
373
L
HOH
123
4
HOH
HOH
374
L
HOH
124
4
HOH
HOH
375
L
HOH
128
4
HOH
HOH
376
L
HOH
129
4
HOH
HOH
377
L
HOH
132
4
HOH
HOH
378
L
HOH
133
4
HOH
HOH
379
L
HOH
137
4
HOH
HOH
380
L
HOH
141
4
HOH
HOH
381
L
HOH
142
4
HOH
HOH
382
L
HOH
145
4
HOH
HOH
383
L
HOH
147
4
HOH
HOH
384
L
HOH
148
4
HOH
HOH
385
L
HOH
153
4
HOH
HOH
386
L
HOH
154
4
HOH
HOH
387
L
HOH
155
4
HOH
HOH
388
L
HOH
157
4
HOH
HOH
389
L
HOH
160
4
HOH
HOH
390
L
HOH
162
4
HOH
HOH
391
L
HOH
163
4
HOH
HOH
392
L
HOH
167
4
HOH
HOH
393
L
HOH
169
4
HOH
HOH
394
L
HOH
170
4
HOH
HOH
395
L
HOH
171
4
HOH
HOH
396
L
HOH
173
4
HOH
HOH
397
L
HOH
174
4
HOH
HOH
398
L
HOH
175
4
HOH
HOH
399
L
HOH
178
4
HOH
HOH
400
L
HOH
181
4
HOH
HOH
401
L
HOH
182
4
HOH
HOH
402
L
HOH
183
4
HOH
HOH
403
L
HOH
188
4
HOH
HOH
404
L
HOH
190
4
HOH
HOH
405
L
HOH
191
4
HOH
HOH
406
L
HOH
192
4
HOH
HOH
407
L
HOH
194
4
HOH
HOH
408
L
HOH
196
4
HOH
HOH
409
L
HOH
197
4
HOH
HOH
410
L
HOH
198
4
HOH
HOH
411
L
HOH
199
4
HOH
HOH
412
L
HOH
200
4
HOH
HOH
413
L
HOH
201
4
HOH
HOH
414
L
HOH
204
4
HOH
HOH
415
L
HOH
206
4
HOH
HOH
416
L
HOH
207
4
HOH
HOH
417
L
HOH
208
4
HOH
HOH
418
L
HOH
210
4
HOH
HOH
419
L
HOH
211
4
HOH
HOH
420
L
HOH
212
4
HOH
HOH
421
L
HOH
213
4
HOH
HOH
422
L
HOH
216
4
HOH
HOH
423
L
HOH
219
4
HOH
HOH
424
L
HOH
220
4
HOH
HOH
425
L
HOH
221
4
HOH
HOH
426
L
HOH
222
4
HOH
HOH
427
L
HOH
225
4
HOH
HOH
428
L
HOH
226
4
HOH
HOH
429
L
HOH
229
4
HOH
HOH
430
L
HOH
231
4
HOH
HOH
431
L
HOH
232
4
HOH
HOH
432
L
HOH
233
4
HOH
HOH
433
L
HOH
235
4
HOH
HOH
434
L
HOH
238
4
HOH
HOH
435
L
HOH
239
4
HOH
HOH
436
L
n
1
165
P
ARG
166
n
2
ARG
166
P
ASP
167
n
3
ASP
167
P
LYS
168
n
4
LYS
168
P
LYS
169
n
5
LYS
169
P
GLN
170
n
6
GLN
170
P
LYS
171
n
7
LYS
171
P
VAL
172
n
8
VAL
172
P
HIS
173
n
9
HIS
173
P
ALA
174
n
10
ALA
174
P
LEU
175
n
11
LEU
175
P
PHE
176
n
12
PHE
176
P
TYR
177
n
13
TYR
177
P
LYS
178
n
14
LYS
178
P
ALA
179
n
15
ALA
179
P
n
16
180
P
n
17
181
P
n
18
182
P
GLU
1
n
1
GLU
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
VAL
5
n
5
VAL
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
ALA
9
n
9
ALA
9
H
GLU
10
n
10
GLU
10
H
VAL
11
n
11
VAL
11
H
LYS
12
n
12
LYS
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
GLU
16
n
16
GLU
16
H
SER
17
n
17
SER
17
H
LEU
18
n
18
LEU
18
H
LYS
19
n
19
LYS
19
H
ILE
20
n
20
ILE
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
LYS
23
n
23
LYS
23
H
GLY
24
n
24
GLY
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
SER
28
n
28
SER
28
H
PHE
29
n
29
PHE
29
H
THR
30
n
30
THR
30
H
SER
31
n
31
SER
31
H
TYR
32
n
32
TYR
32
H
TRP
33
n
33
TRP
33
H
ILE
34
n
34
ILE
34
H
GLY
35
n
35
GLY
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
ARG
38
n
38
ARG
38
H
GLN
39
n
39
GLN
39
H
MET
40
n
40
MET
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
LYS
43
n
43
LYS
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
MET
48
n
48
MET
48
H
GLY
49
n
49
GLY
49
H
ILE
50
n
50
ILE
50
H
ILE
51
n
51
ILE
51
H
TYR
52
n
52
TYR
52
H
PRO
52
n
53
A
PRO
52
H
GLY
53
n
54
GLY
53
H
ASP
54
n
55
ASP
54
H
SER
55
n
56
SER
55
H
ASP
56
n
57
ASP
56
H
THR
57
n
58
THR
57
H
ARG
58
n
59
ARG
58
H
TYR
59
n
60
TYR
59
H
SER
60
n
61
SER
60
H
PRO
61
n
62
PRO
61
H
SER
62
n
63
SER
62
H
PHE
63
n
64
PHE
63
H
GLN
64
n
65
GLN
64
H
GLY
65
n
66
GLY
65
H
GLN
66
n
67
GLN
66
H
VAL
67
n
68
VAL
67
H
THR
68
n
69
THR
68
H
ILE
69
n
70
ILE
69
H
SER
70
n
71
SER
70
H
ALA
71
n
72
ALA
71
H
ASP
72
n
73
ASP
72
H
LYS
73
n
74
LYS
73
H
SER
74
n
75
SER
74
H
ILE
75
n
76
ILE
75
H
SER
76
n
77
SER
76
H
THR
77
n
78
THR
77
H
ALA
78
n
79
ALA
78
H
TYR
79
n
80
TYR
79
H
LEU
80
n
81
LEU
80
H
GLN
81
n
82
GLN
81
H
TRP
82
n
83
TRP
82
H
SER
82
n
84
A
SER
82
H
SER
82
n
85
B
SER
82
H
LEU
82
n
86
C
LEU
82
H
LYS
83
n
87
LYS
83
H
ALA
84
n
88
ALA
84
H
SER
85
n
89
SER
85
H
ASP
86
n
90
ASP
86
H
THR
87
n
91
THR
87
H
ALA
88
n
92
ALA
88
H
MET
89
n
93
MET
89
H
TYR
90
n
94
TYR
90
H
TYR
91
n
95
TYR
91
H
CYS
92
n
96
CYS
92
H
ALA
93
n
97
ALA
93
H
ARG
94
n
98
ARG
94
H
LEU
95
n
99
LEU
95
H
GLY
96
n
100
GLY
96
H
GLY
97
n
101
GLY
97
H
ARG
98
n
102
ARG
98
H
TYR
99
n
103
TYR
99
H
TYR
100
n
104
TYR
100
H
TYR
100
n
105
A
TYR
100
H
ASP
100
n
106
B
ASP
100
H
SER
100
n
107
C
SER
100
H
SER
100
n
108
D
SER
100
H
GLY
100
n
109
E
GLY
100
H
TYR
100
n
110
F
TYR
100
H
TYR
100
n
111
G
TYR
100
H
TYR
100
n
112
H
TYR
100
H
PHE
100
n
113
I
PHE
100
H
ASP
101
n
114
ASP
101
H
TYR
102
n
115
TYR
102
H
TRP
103
n
116
TRP
103
H
GLY
104
n
117
GLY
104
H
GLN
105
n
118
GLN
105
H
GLY
106
n
119
GLY
106
H
THR
107
n
120
THR
107
H
LEU
108
n
121
LEU
108
H
VAL
109
n
122
VAL
109
H
THR
110
n
123
THR
110
H
VAL
111
n
124
VAL
111
H
SER
112
n
125
SER
112
H
SER
113
n
126
SER
113
H
ALA
114
n
127
ALA
114
H
SER
115
n
128
SER
115
H
THR
116
n
129
THR
116
H
LYS
117
n
130
LYS
117
H
GLY
118
n
131
GLY
118
H
PRO
119
n
132
PRO
119
H
SER
120
n
133
SER
120
H
VAL
121
n
134
VAL
121
H
PHE
122
n
135
PHE
122
H
PRO
123
n
136
PRO
123
H
LEU
124
n
137
LEU
124
H
ALA
125
n
138
ALA
125
H
PRO
126
n
139
PRO
126
H
SER
127
n
140
SER
127
H
SER
128
n
141
SER
128
H
LYS
129
n
142
LYS
129
H
SER
130
n
143
SER
130
H
THR
131
n
144
THR
131
H
SER
132
n
145
SER
132
H
GLY
133
n
146
GLY
133
H
GLY
134
n
147
GLY
134
H
THR
135
n
148
THR
135
H
ALA
136
n
149
ALA
136
H
ALA
137
n
150
ALA
137
H
LEU
138
n
151
LEU
138
H
GLY
139
n
152
GLY
139
H
CYS
140
n
153
CYS
140
H
LEU
141
n
154
LEU
141
H
VAL
142
n
155
VAL
142
H
LYS
143
n
156
LYS
143
H
ASP
144
n
157
ASP
144
H
TYR
145
n
158
TYR
145
H
PHE
146
n
159
PHE
146
H
PRO
147
n
160
PRO
147
H
GLU
148
n
161
GLU
148
H
PRO
149
n
162
PRO
149
H
VAL
150
n
163
VAL
150
H
THR
151
n
164
THR
151
H
VAL
152
n
165
VAL
152
H
SER
153
n
166
SER
153
H
TRP
154
n
167
TRP
154
H
ASN
155
n
168
ASN
155
H
SER
156
n
169
SER
156
H
GLY
157
n
170
GLY
157
H
ALA
158
n
171
ALA
158
H
LEU
159
n
172
LEU
159
H
THR
160
n
173
THR
160
H
SER
161
n
174
SER
161
H
GLY
162
n
175
GLY
162
H
VAL
163
n
176
VAL
163
H
HIS
164
n
177
HIS
164
H
THR
165
n
178
THR
165
H
PHE
166
n
179
PHE
166
H
PRO
167
n
180
PRO
167
H
ALA
168
n
181
ALA
168
H
VAL
169
n
182
VAL
169
H
LEU
170
n
183
LEU
170
H
GLN
171
n
184
GLN
171
H
SER
172
n
185
SER
172
H
SER
173
n
186
SER
173
H
GLY
174
n
187
GLY
174
H
LEU
175
n
188
LEU
175
H
TYR
176
n
189
TYR
176
H
SER
177
n
190
SER
177
H
LEU
178
n
191
LEU
178
H
SER
179
n
192
SER
179
H
SER
180
n
193
SER
180
H
VAL
181
n
194
VAL
181
H
VAL
182
n
195
VAL
182
H
THR
183
n
196
THR
183
H
VAL
184
n
197
VAL
184
H
PRO
185
n
198
PRO
185
H
SER
186
n
199
SER
186
H
SER
187
n
200
SER
187
H
SER
188
n
201
SER
188
H
LEU
189
n
202
LEU
189
H
GLY
190
n
203
GLY
190
H
THR
191
n
204
THR
191
H
GLN
192
n
205
GLN
192
H
THR
193
n
206
THR
193
H
TYR
194
n
207
TYR
194
H
ILE
195
n
208
ILE
195
H
CYS
196
n
209
CYS
196
H
ASN
197
n
210
ASN
197
H
VAL
198
n
211
VAL
198
H
ASN
199
n
212
ASN
199
H
HIS
200
n
213
HIS
200
H
LYS
201
n
214
LYS
201
H
PRO
202
n
215
PRO
202
H
SER
203
n
216
SER
203
H
ASN
204
n
217
ASN
204
H
THR
205
n
218
THR
205
H
LYS
206
n
219
LYS
206
H
VAL
207
n
220
VAL
207
H
ASP
208
n
221
ASP
208
H
LYS
209
n
222
LYS
209
H
ARG
210
n
223
ARG
210
H
VAL
211
n
224
VAL
211
H
GLU
212
n
225
GLU
212
H
PRO
213
n
226
PRO
213
H
LYS
214
n
227
LYS
214
H
SER
215
n
228
SER
215
H
n
229
216
H
n
230
217
H
n
231
218
H
ASN
1
n
1
ASN
1
L
PHE
2
n
2
PHE
2
L
MET
3
n
3
MET
3
L
LEU
4
n
4
LEU
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
PRO
7
n
7
PRO
7
L
HIS
8
n
8
HIS
8
L
SER
9
n
9
SER
9
L
VAL
11
n
10
VAL
11
L
SER
12
n
11
SER
12
L
GLU
13
n
12
GLU
13
L
SER
14
n
13
SER
14
L
PRO
15
n
14
PRO
15
L
GLY
16
n
15
GLY
16
L
LYS
17
n
16
LYS
17
L
THR
18
n
17
THR
18
L
VAL
19
n
18
VAL
19
L
THR
20
n
19
THR
20
L
ILE
21
n
20
ILE
21
L
SER
22
n
21
SER
22
L
CYS
23
n
22
CYS
23
L
THR
24
n
23
THR
24
L
ARG
25
n
24
ARG
25
L
SER
26
n
25
SER
26
L
SER
27
n
26
SER
27
L
GLY
27
n
27
A
GLY
27
L
SER
27
n
28
B
SER
27
L
ILE
28
n
29
ILE
28
L
ALA
29
n
30
ALA
29
L
SER
30
n
31
SER
30
L
ASN
31
n
32
ASN
31
L
TYR
32
n
33
TYR
32
L
VAL
33
n
34
VAL
33
L
GLN
34
n
35
GLN
34
L
TRP
35
n
36
TRP
35
L
TYR
36
n
37
TYR
36
L
GLN
37
n
38
GLN
37
L
GLN
38
n
39
GLN
38
L
ARG
39
n
40
ARG
39
L
PRO
40
n
41
PRO
40
L
GLY
41
n
42
GLY
41
L
SER
42
n
43
SER
42
L
SER
43
n
44
SER
43
L
PRO
44
n
45
PRO
44
L
THR
45
n
46
THR
45
L
THR
46
n
47
THR
46
L
VAL
47
n
48
VAL
47
L
ILE
48
n
49
ILE
48
L
TYR
49
n
50
TYR
49
L
GLU
50
n
51
GLU
50
L
ASP
51
n
52
ASP
51
L
ASN
52
n
53
ASN
52
L
GLN
53
n
54
GLN
53
L
ARG
54
n
55
ARG
54
L
PRO
55
n
56
PRO
55
L
SER
56
n
57
SER
56
L
GLY
57
n
58
GLY
57
L
VAL
58
n
59
VAL
58
L
PRO
59
n
60
PRO
59
L
ASP
60
n
61
ASP
60
L
ARG
61
n
62
ARG
61
L
PHE
62
n
63
PHE
62
L
SER
63
n
64
SER
63
L
GLY
64
n
65
GLY
64
L
SER
65
n
66
SER
65
L
ILE
66
n
67
ILE
66
L
ASP
66
n
68
A
ASP
66
L
SER
66
n
69
B
SER
66
L
SER
67
n
70
SER
67
L
SER
68
n
71
SER
68
L
ASN
69
n
72
ASN
69
L
SER
70
n
73
SER
70
L
ALA
71
n
74
ALA
71
L
SER
72
n
75
SER
72
L
LEU
73
n
76
LEU
73
L
THR
74
n
77
THR
74
L
ILE
75
n
78
ILE
75
L
SER
76
n
79
SER
76
L
GLY
77
n
80
GLY
77
L
LEU
78
n
81
LEU
78
L
LYS
79
n
82
LYS
79
L
THR
80
n
83
THR
80
L
GLU
81
n
84
GLU
81
L
ASP
82
n
85
ASP
82
L
GLU
83
n
86
GLU
83
L
ALA
84
n
87
ALA
84
L
ASP
85
n
88
ASP
85
L
TYR
86
n
89
TYR
86
L
TYR
87
n
90
TYR
87
L
CYS
88
n
91
CYS
88
L
GLN
89
n
92
GLN
89
L
SER
90
n
93
SER
90
L
TYR
91
n
94
TYR
91
L
ASP
92
n
95
ASP
92
L
SER
93
n
96
SER
93
L
SER
94
n
97
SER
94
L
SER
95
n
98
SER
95
L
TRP
96
n
99
TRP
96
L
VAL
97
n
100
VAL
97
L
PHE
98
n
101
PHE
98
L
GLY
99
n
102
GLY
99
L
GLY
100
n
103
GLY
100
L
GLY
101
n
104
GLY
101
L
THR
102
n
105
THR
102
L
LYS
103
n
106
LYS
103
L
LEU
104
n
107
LEU
104
L
THR
105
n
108
THR
105
L
VAL
106
n
109
VAL
106
L
LEU
106
n
110
A
LEU
106
L
GLY
107
n
111
GLY
107
L
GLN
108
n
112
GLN
108
L
PRO
109
n
113
PRO
109
L
LYS
110
n
114
LYS
110
L
ALA
111
n
115
ALA
111
L
ALA
112
n
116
ALA
112
L
PRO
113
n
117
PRO
113
L
SER
114
n
118
SER
114
L
VAL
115
n
119
VAL
115
L
THR
116
n
120
THR
116
L
LEU
117
n
121
LEU
117
L
PHE
118
n
122
PHE
118
L
PRO
119
n
123
PRO
119
L
PRO
120
n
124
PRO
120
L
SER
121
n
125
SER
121
L
SER
122
n
126
SER
122
L
GLU
123
n
127
GLU
123
L
GLU
124
n
128
GLU
124
L
LEU
125
n
129
LEU
125
L
GLN
126
n
130
GLN
126
L
ALA
127
n
131
ALA
127
L
ASN
128
n
132
ASN
128
L
LYS
129
n
133
LYS
129
L
ALA
130
n
134
ALA
130
L
THR
131
n
135
THR
131
L
LEU
132
n
136
LEU
132
L
VAL
133
n
137
VAL
133
L
CYS
134
n
138
CYS
134
L
LEU
135
n
139
LEU
135
L
ILE
136
n
140
ILE
136
L
SER
137
n
141
SER
137
L
ASP
138
n
142
ASP
138
L
PHE
139
n
143
PHE
139
L
TYR
140
n
144
TYR
140
L
PRO
141
n
145
PRO
141
L
GLY
142
n
146
GLY
142
L
ALA
143
n
147
ALA
143
L
VAL
144
n
148
VAL
144
L
THR
145
n
149
THR
145
L
VAL
146
n
150
VAL
146
L
ALA
147
n
151
ALA
147
L
TRP
148
n
152
TRP
148
L
LYS
149
n
153
LYS
149
L
ALA
150
n
154
ALA
150
L
ASP
151
n
155
ASP
151
L
SER
152
n
156
SER
152
L
SER
153
n
157
SER
153
L
PRO
154
n
158
PRO
154
L
VAL
155
n
159
VAL
155
L
LYS
156
n
160
LYS
156
L
ALA
157
n
161
ALA
157
L
GLY
158
n
162
GLY
158
L
VAL
159
n
163
VAL
159
L
GLU
160
n
164
GLU
160
L
THR
161
n
165
THR
161
L
THR
162
n
166
THR
162
L
THR
163
n
167
THR
163
L
PRO
164
n
168
PRO
164
L
SER
165
n
169
SER
165
L
LYS
166
n
170
LYS
166
L
GLN
167
n
171
GLN
167
L
SER
168
n
172
SER
168
L
ASN
169
n
173
ASN
169
L
ASN
170
n
174
ASN
170
L
LYS
171
n
175
LYS
171
L
TYR
172
n
176
TYR
172
L
ALA
173
n
177
ALA
173
L
ALA
174
n
178
ALA
174
L
SER
175
n
179
SER
175
L
SER
176
n
180
SER
176
L
TYR
177
n
181
TYR
177
L
LEU
178
n
182
LEU
178
L
SER
179
n
183
SER
179
L
LEU
180
n
184
LEU
180
L
THR
181
n
185
THR
181
L
PRO
182
n
186
PRO
182
L
GLU
183
n
187
GLU
183
L
GLN
184
n
188
GLN
184
L
TRP
185
n
189
TRP
185
L
LYS
186
n
190
LYS
186
L
SER
187
n
191
SER
187
L
HIS
188
n
192
HIS
188
L
ARG
189
n
193
ARG
189
L
SER
190
n
194
SER
190
L
TYR
191
n
195
TYR
191
L
SER
192
n
196
SER
192
L
CYS
193
n
197
CYS
193
L
GLN
194
n
198
GLN
194
L
VAL
195
n
199
VAL
195
L
THR
196
n
200
THR
196
L
HIS
197
n
201
HIS
197
L
GLU
198
n
202
GLU
198
L
GLY
199
n
203
GLY
199
L
SER
200
n
204
SER
200
L
THR
201
n
205
THR
201
L
VAL
202
n
206
VAL
202
L
GLU
203
n
207
GLU
203
L
LYS
204
n
208
LYS
204
L
THR
205
n
209
THR
205
L
VAL
206
n
210
VAL
206
L
ALA
207
n
211
ALA
207
L
PRO
208
n
212
PRO
208
L
THR
209
n
213
THR
209
L
n
214
210
L
n
215
211
L
n
216
212
L
9.7659
-4.1850
0.7959
6.5967
1.5188
3.1977
-0.0703
0.8096
0.8954
-0.5801
-0.0111
-0.3813
-0.4478
0.2752
0.1416
0.3111
-0.0643
0.0013
0.2143
0.0740
0.1972
refined
44.2081
-105.2746
84.9128
X-RAY DIFFRACTION
4.3098
2.0073
1.2974
1.4075
1.3528
2.4318
0.2257
-0.2938
0.6652
0.1922
0.0951
-0.3584
-0.1711
0.3493
-0.1556
0.1579
-0.0641
0.0245
0.4320
-0.0114
0.2181
refined
54.2957
-107.8936
94.6925
X-RAY DIFFRACTION
2.3572
0.2778
-0.3537
2.9611
0.7349
2.4686
0.1844
-0.4384
0.3546
0.2776
-0.0834
-0.0068
-0.2001
0.1635
-0.0861
0.1928
-0.0890
0.0449
0.2578
-0.0294
0.2427
refined
40.3677
-107.3518
97.6664
X-RAY DIFFRACTION
2.4533
-1.3081
-0.5616
3.1470
0.4552
1.1210
-0.1105
-0.2032
0.0373
0.2231
0.0015
-0.2416
0.0856
0.3592
0.1068
0.2156
0.0026
-0.0050
0.2758
-0.0129
0.1110
refined
47.2147
-113.1818
95.4693
X-RAY DIFFRACTION
3.7035
1.1006
-0.8246
3.4850
3.7646
5.2766
0.0006
-0.0721
0.7707
0.0381
-0.2220
0.5428
-0.4349
-0.6096
0.2479
0.3433
0.1176
0.0872
0.1967
-0.0220
0.3769
refined
19.5336
-104.6303
94.6820
X-RAY DIFFRACTION
3.8835
-2.0923
-0.8290
1.2318
0.4996
0.2299
0.1280
-0.0001
0.2583
-0.1447
-0.0624
-0.0954
-0.1479
-0.0113
-0.0728
0.2326
-0.0006
0.0055
0.1348
0.0154
0.1992
refined
53.2285
-118.8183
86.3786
X-RAY DIFFRACTION
1.0172
0.7113
2.2362
2.1503
0.1002
6.3137
0.1946
-0.0521
-0.3612
0.1712
0.1444
-0.5862
0.3082
0.1488
-0.2987
0.6804
-0.2003
-0.3287
0.4739
-0.3433
1.0489
refined
68.9069
-150.6781
66.9665
X-RAY DIFFRACTION
0.5612
-0.2899
0.0612
4.1380
1.7163
1.5235
-0.1562
0.1423
0.1077
-0.2309
0.0237
0.5046
-0.0969
-0.0123
0.0898
0.2539
-0.0350
-0.0352
0.2073
0.0376
0.2387
refined
63.9095
-130.0515
73.1360
X-RAY DIFFRACTION
1.3942
0.9416
0.7252
4.6274
3.4177
3.3184
-0.1196
0.0864
0.0678
-0.0694
0.1233
0.2490
0.2428
0.1354
0.0200
0.1657
0.0143
-0.0419
0.1872
0.0832
0.2211
refined
65.0235
-132.3033
74.4425
X-RAY DIFFRACTION
3.7406
-1.9697
-0.8920
4.3632
3.9908
5.1375
0.0318
0.3286
0.2967
-0.3235
0.0235
-0.2597
0.0184
0.0921
-0.0670
0.1337
-0.0548
0.0009
0.1679
0.0279
0.1375
refined
72.6511
-128.6265
73.6240
X-RAY DIFFRACTION
0.3911
0.1000
-0.2039
1.7709
0.7495
0.6226
0.0419
-0.2088
0.0299
0.4194
-0.2291
-0.1542
-0.0251
0.1909
0.0430
0.5082
-0.2243
0.0122
0.1949
0.2484
0.1734
refined
31.9601
-127.6815
102.9644
X-RAY DIFFRACTION
2.1750
-0.0129
0.7372
2.2371
0.0974
4.1005
0.1236
-0.0109
-0.0655
-0.0083
0.0358
0.0109
0.0457
-0.1564
-0.1302
0.1100
0.0092
0.0267
0.1277
-0.0009
0.1809
refined
26.9119
-124.8177
88.7382
X-RAY DIFFRACTION
2.8751
0.3728
1.0347
3.2862
2.7499
3.9573
-0.0190
0.3124
0.0851
0.0492
0.0743
-0.2284
-0.0148
0.2162
-0.1072
0.1486
-0.0152
0.0405
0.1472
0.0350
0.1650
refined
30.4010
-126.0872
83.0804
X-RAY DIFFRACTION
3.9495
-3.5658
-3.1473
7.0870
4.9510
3.6618
-0.0216
-0.7532
0.1237
1.0589
0.0091
-0.0469
0.6572
0.5266
0.0532
0.2579
-0.0138
-0.0101
0.2530
-0.0127
0.1914
refined
31.8615
-117.9434
101.7528
X-RAY DIFFRACTION
4.3196
-2.0611
-0.7819
1.7716
-0.0117
0.3663
0.1427
0.2689
-0.4617
-0.3858
-0.0422
0.3352
-0.1019
0.1159
-0.1634
0.2631
-0.0392
0.0064
0.2310
-0.0686
0.2409
refined
39.9049
-136.7469
78.0348
X-RAY DIFFRACTION
5.6805
-0.2377
0.1286
0.8620
0.3136
0.3813
-0.0500
-0.1193
-0.4758
0.0156
0.0069
0.1106
0.0740
-0.1673
0.0158
0.2141
-0.0345
-0.0028
0.1939
0.0164
0.1924
refined
60.9616
-141.6356
82.9531
X-RAY DIFFRACTION
9.2749
7.0211
-4.6448
6.2549
-1.6463
9.2248
0.2211
-0.8356
-0.4279
1.3036
-0.5091
0.1704
-0.2686
-0.1477
0.0714
0.3644
-0.0526
0.0798
0.4803
0.1364
0.3057
refined
57.6964
-141.3417
93.4102
X-RAY DIFFRACTION
6.1570
-0.8803
1.2268
4.5598
0.6476
2.3455
-0.2547
0.6422
0.8177
-0.2803
-0.1678
0.0655
-0.4907
-0.1984
0.4269
0.1966
-0.0165
0.0762
0.3246
0.0417
0.2309
refined
52.6464
-134.6203
78.9687
X-RAY DIFFRACTION
0.3345
0.1142
0.2793
0.2528
-0.4274
1.5221
0.0383
-0.0345
-0.1550
0.2022
-0.0766
-0.2657
0.2609
0.2730
-0.1841
0.3593
0.1676
-0.0774
0.3818
0.2878
0.4562
refined
70.9740
-146.8477
91.6985
X-RAY DIFFRACTION
2.4713
0.1529
-2.5235
2.5003
1.3452
5.0287
0.1488
0.0870
-1.1901
0.4636
-0.0974
-0.2842
0.3776
-0.0458
-0.0700
0.2989
-0.0577
-0.0377
0.1967
0.0342
0.5000
refined
56.4493
-149.2223
82.8367
X-RAY DIFFRACTION
5.5599
0.5895
-4.0649
5.3991
-4.3157
9.4178
0.2955
0.2806
0.2975
0.3275
0.2870
2.7338
0.2702
-2.5586
-0.4215
0.3555
-0.1471
0.0660
0.4691
0.0789
0.5394
refined
17.1044
-113.4549
101.6621
X-RAY DIFFRACTION
4.3730
3.3758
0.4728
6.1113
-0.8573
3.2764
0.0323
-0.3292
0.6745
-0.0714
-0.3281
-0.2076
0.2382
0.2268
0.2188
0.2781
0.0836
0.0904
0.2629
0.0076
0.2572
refined
24.6913
-106.3044
101.3449
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain H and resid 1:10)
X-RAY DIFFRACTION
2
(chain H and resid 11:24)
X-RAY DIFFRACTION
3
(chain H and resid 25:81)
X-RAY DIFFRACTION
4
(chain H and resid 82:96)
X-RAY DIFFRACTION
5
(chain H and resid 97:100F)
X-RAY DIFFRACTION
6
(chain H and resid 100G:126)
X-RAY DIFFRACTION
7
(chain H and resid 127:132)
X-RAY DIFFRACTION
8
(chain H and resid 133:164)
X-RAY DIFFRACTION
9
(chain H and resid 165:200)
X-RAY DIFFRACTION
10
(chain H and resid 201:215)
X-RAY DIFFRACTION
11
(chain L and resid 1:5)
X-RAY DIFFRACTION
12
(chain L and resid 6:71)
X-RAY DIFFRACTION
13
(chain L and resid 72:90)
X-RAY DIFFRACTION
14
(chain L and resid 91:98)
X-RAY DIFFRACTION
15
(chain L and resid 99:115)
X-RAY DIFFRACTION
16
(chain L and resid 116:153)
X-RAY DIFFRACTION
17
(chain L and resid 154:160)
X-RAY DIFFRACTION
18
(chain L and resid 161:180)
X-RAY DIFFRACTION
19
(chain L and resid 181:188)
X-RAY DIFFRACTION
20
(chain L and resid 189:209)
X-RAY DIFFRACTION
21
(chain P and resid 166:170)
X-RAY DIFFRACTION
22
(chain P and resid 171:179)
author_and_software_defined_assembly
PISA
3
trimeric
4810
-28
20840
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
GLN
3
B
N
GLN
3
H
O
SER
25
B
O
SER
25
H
N
LEU
18
B
N
LEU
18
H
O
TRP
82
B
O
TRP
83
H
O
THR
77
B
O
THR
78
H
N
ASP
72
B
N
ASP
73
H
N
GLU
10
B
N
GLU
10
H
O
LEU
108
B
O
LEU
121
H
O
THR
107
B
O
THR
120
H
N
TYR
90
B
N
TYR
94
H
O
TYR
91
B
O
TYR
95
H
N
VAL
37
B
N
VAL
37
H
N
ILE
34
B
N
ILE
34
H
O
ILE
51
B
O
ILE
51
H
N
ILE
50
B
N
ILE
50
H
O
ARG
58
B
O
ARG
59
H
N
GLU
10
B
N
GLU
10
H
O
LEU
108
B
O
LEU
121
H
O
THR
107
B
O
THR
120
H
N
TYR
90
B
N
TYR
94
H
N
ARG
94
B
N
ARG
98
H
O
TYR
102
B
O
TYR
115
H
N
PHE
122
B
N
PHE
135
H
O
LEU
141
B
O
LEU
154
H
N
VAL
142
B
N
VAL
155
H
O
LEU
178
B
O
LEU
191
H
O
VAL
181
B
O
VAL
194
H
N
HIS
164
B
N
HIS
177
H
N
PHE
122
B
N
PHE
135
H
O
LEU
141
B
O
LEU
154
H
N
VAL
142
B
N
VAL
155
H
O
LEU
178
B
O
LEU
191
H
O
SER
177
B
O
SER
190
H
N
VAL
169
B
N
VAL
182
H
N
SER
153
B
N
SER
166
H
O
ASN
197
B
O
ASN
210
H
N
VAL
198
B
N
VAL
211
H
O
VAL
207
B
O
VAL
220
L
N
THR
5
C
N
THR
5
L
O
THR
24
C
O
THR
23
L
N
VAL
19
C
N
VAL
18
L
O
ILE
75
C
O
ILE
78
L
O
SER
72
C
O
SER
75
L
N
SER
65
C
N
SER
66
L
N
VAL
11
C
N
VAL
10
L
O
LYS
103
C
O
LYS
106
L
O
LEU
104
C
O
LEU
107
L
N
ALA
84
C
N
ALA
87
L
O
ASP
85
C
O
ASP
88
L
N
GLN
38
C
N
GLN
39
L
N
TRP
35
C
N
TRP
36
L
O
ILE
48
C
O
ILE
49
L
N
VAL
11
C
N
VAL
10
L
O
LYS
103
C
O
LYS
106
L
O
LEU
104
C
O
LEU
107
L
N
ALA
84
C
N
ALA
87
L
N
SER
90
C
N
SER
93
L
O
VAL
97
C
O
VAL
100
L
N
SER
114
C
N
SER
118
L
O
SER
137
C
O
SER
141
L
N
ALA
130
C
N
ALA
134
L
O
LEU
180
C
O
LEU
184
L
O
TYR
177
C
O
TYR
181
L
N
GLU
160
C
N
GLU
164
L
N
SER
114
C
N
SER
118
L
O
SER
137
C
O
SER
141
L
N
ALA
130
C
N
ALA
134
L
O
LEU
180
C
O
LEU
184
L
O
ALA
173
C
O
ALA
177
L
N
SER
165
C
N
SER
169
L
O
SER
153
C
O
SER
157
L
N
ALA
150
C
N
ALA
154
L
N
ALA
147
C
N
ALA
151
L
O
GLN
194
C
O
GLN
198
L
N
TYR
191
C
N
TYR
195
L
O
VAL
206
C
O
VAL
210
1
P
LEU
165
A
LEU
1
1
Y
1
P
ASP
180
A
ASP
16
1
Y
1
P
ALA
181
A
ALA
17
1
Y
1
P
VAL
182
A
VAL
18
1
Y
1
H
CYS
216
B
CYS
229
1
Y
1
H
ASP
217
B
ASP
230
1
Y
1
H
LYS
218
B
LYS
231
1
Y
1
L
GLU
210
C
GLU
214
1
Y
1
L
CYS
211
C
CYS
215
1
Y
1
L
SER
212
C
SER
216
1
Y
1
L
L
O
O
GLN
HOH
34
350
2.00
1
L
L
O
O
HOH
HOH
306
348
2.02
1
H
H
OH
O
TYR
HOH
91
325
2.11
1
L
L
N
O
GLN
HOH
89
350
2.12
1
H
H
OG
O
SER
HOH
28
364
2.13
1
H
H
OG
O
SER
HOH
188
303
2.16
1
H
L
O
O
HOH
HOH
330
413
2.16
1
H
H
O
O
HOH
HOH
341
358
2.17
1
L
L
O
O
HOH
HOH
411
419
2.18
1
L
L
O
O
HOH
HOH
357
410
2.19
A
1
H
TYR
100
-69.88
73.52
1
H
THR
191
-134.92
-35.93
1
L
ASP
51
66.25
-50.92
1
L
SER
90
-144.30
-157.19
1
L
ASP
92
-96.37
-113.08
1
L
SER
93
-68.39
42.73
A
1
L
LEU
106
-58.10
93.07
1
L
ASP
151
54.41
-107.58
0.2462
0.1612
0.1698
2.30
36.918
1850
18276
18258
10.13
96.40
0.31
randomized selection
1
0.00
MOLECULAR REPLACEMENT
25.47
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
2.30
36.918
233
3694
0
0
3461
0.007
3556
1.136
4836
14.523
1264
0.073
533
0.006
612
0.3136
0.1933
2.3459
130
1068
83.00
0.2878
0.1921
2.4149
138
1209
94.00
0.3323
0.2010
2.4928
137
1212
95.00
0.3304
0.1992
2.5819
146
1254
95.00
0.2743
0.1923
2.6852
141
1231
96.00
0.2741
0.1951
2.8074
133
1279
97.00
0.3154
0.2024
2.9554
145
1286
98.00
0.2960
0.1819
3.1404
146
1263
98.00
0.2730
0.1795
3.3828
140
1318
99.00
0.2234
0.1703
3.7229
144
1290
99.00
0.2392
0.1372
4.2609
144
1321
100.00
0.1906
0.1082
5.3657
153
1316
100.00
0.1535
0.1278
36.9225
153
1361
100.00
2.3
50
4RIS
18276
18258
2
2
1
99.9
2.30
2.34
1
99.5
model building
PHENIX
refinement
PHENIX
(phenix.refine: 1.8.2_1309)
data collection
SERGUI
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHENIX
Envelope glycoprotein, CH58-UA Fab heavy chain, CH58-UA Fab light chain
Structural Analysis of the Unmutated Ancestor of the HIV-1 Envelope V2 Region Antibody CH58 Isolated From an RV144 HIV-1 Vaccine Efficacy Trial Vaccinee and Associated with Decreased Transmission Risk
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
P
ARG
166
A
ARG
2
HELX_P
P
TYR
177
A
TYR
13
1
1
12
H
SER
28
B
SER
28
HELX_P
H
TYR
32
B
TYR
32
5
2
5
H
LYS
73
B
LYS
74
HELX_P
H
ILE
75
B
ILE
76
5
3
3
H
LYS
83
B
LYS
87
HELX_P
H
THR
87
B
THR
91
5
4
5
H
SER
156
B
SER
169
HELX_P
H
ALA
158
B
ALA
171
5
5
3
H
SER
187
B
SER
200
HELX_P
H
LEU
189
B
LEU
202
5
6
3
H
LYS
201
B
LYS
214
HELX_P
H
ASN
204
B
ASN
217
5
7
4
L
SER
27
C
SER
28
HELX_P
L
ASN
31
C
ASN
32
5
8
5
B
L
LYS
79
C
LYS
82
HELX_P
L
GLU
83
C
GLU
86
5
9
5
L
SER
121
C
SER
125
HELX_P
L
ALA
127
C
ALA
131
1
10
7
L
THR
181
C
THR
185
HELX_P
L
SER
187
C
SER
191
1
11
7
disulf
2.044
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
92
B
SG
CYS
96
1_555
disulf
2.027
H
CYS
140
B
SG
CYS
153
1_555
H
CYS
196
B
SG
CYS
209
1_555
disulf
2.076
L
CYS
23
C
SG
CYS
22
1_555
L
CYS
88
C
SG
CYS
91
1_555
disulf
2.044
L
CYS
134
C
SG
CYS
138
1_555
L
CYS
193
C
SG
CYS
197
1_555
IMMUNE SYSTEM
antibody, IgG fold, Immune system, HIV-1 gp120 V2 region
H
PHE
146
B
PHE
159
1
H
PRO
147
B
PRO
160
-8.40
H
GLU
148
B
GLU
161
1
H
PRO
149
B
PRO
162
-2.19
L
TYR
140
C
TYR
144
1
L
PRO
141
C
PRO
145
-0.60
K7Z4Z0_9HIV1
UNP
1
160
K7Z4Z0
LRDKKQKVHALFYKLDVV
4RIS
PDB
2
4RIS
4RIS
PDB
3
4RIS
160
177
4RIS
165
182
K7Z4Z0
P
1
1
18
1
218
4RIS
1
218
4RIS
H
2
1
231
1
212
4RIS
1
212
4RIS
L
3
1
216
1
LEU
SEE REMARK 999
ALA
179
4RIS
P
K7Z4Z0
UNP
174
15
1
VAL
SEE REMARK 999
ALA
181
4RIS
P
K7Z4Z0
UNP
176
17
4
6
4
4
4
3
4
5
4
4
4
4
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
GLN
3
B
GLN
3
H
GLN
6
B
GLN
6
H
LEU
18
B
LEU
18
H
SER
25
B
SER
25
H
THR
77
B
THR
78
H
TRP
82
B
TRP
83
H
THR
68
B
THR
69
H
ASP
72
B
ASP
73
H
GLU
10
B
GLU
10
H
LYS
12
B
LYS
12
H
THR
107
B
THR
120
H
VAL
111
B
VAL
124
H
ALA
88
B
ALA
92
H
ARG
98
B
ARG
102
H
TRP
33
B
TRP
33
H
GLN
39
B
GLN
39
H
LEU
45
B
LEU
45
H
TYR
52
B
TYR
52
H
ASP
56
B
ASP
57
H
TYR
59
B
TYR
60
H
GLU
10
B
GLU
10
H
LYS
12
B
LYS
12
H
THR
107
B
THR
120
H
VAL
111
B
VAL
124
H
ALA
88
B
ALA
92
H
ARG
98
B
ARG
102
H
TYR
100
B
TYR
110
H
TRP
103
B
TRP
116
F
H
SER
120
B
SER
133
H
LEU
124
B
LEU
137
H
THR
135
B
THR
148
H
TYR
145
B
TYR
158
H
TYR
176
B
TYR
189
H
PRO
185
B
PRO
198
H
VAL
163
B
VAL
176
H
THR
165
B
THR
178
H
SER
120
B
SER
133
H
LEU
124
B
LEU
137
H
THR
135
B
THR
148
H
TYR
145
B
TYR
158
H
TYR
176
B
TYR
189
H
PRO
185
B
PRO
198
H
VAL
169
B
VAL
182
H
LEU
170
B
LEU
183
H
THR
151
B
THR
164
H
TRP
154
B
TRP
167
H
TYR
194
B
TYR
207
H
HIS
200
B
HIS
213
H
THR
205
B
THR
218
H
VAL
211
B
VAL
224
L
LEU
4
C
LEU
4
L
THR
5
C
THR
5
L
THR
18
C
THR
17
L
ARG
25
C
ARG
24
L
SER
70
C
SER
73
L
SER
76
C
SER
79
L
PHE
62
C
PHE
63
L
ASP
66
C
ASP
68
A
L
SER
9
C
SER
9
L
GLU
13
C
GLU
12
L
THR
102
C
THR
105
L
VAL
106
C
VAL
109
L
ALA
84
C
ALA
87
L
TYR
91
C
TYR
94
L
GLN
34
C
GLN
35
L
GLN
38
C
GLN
39
L
THR
45
C
THR
46
L
ILE
48
C
ILE
49
L
SER
9
C
SER
9
L
GLU
13
C
GLU
12
L
THR
102
C
THR
105
L
VAL
106
C
VAL
109
L
ALA
84
C
ALA
87
L
TYR
91
C
TYR
94
L
TRP
96
C
TRP
99
L
PHE
98
C
PHE
101
L
SER
114
C
SER
118
L
PHE
118
C
PHE
122
L
ALA
130
C
ALA
134
L
PHE
139
C
PHE
143
L
TYR
172
C
TYR
176
L
LEU
180
C
LEU
184
L
VAL
159
C
VAL
163
L
THR
161
C
THR
165
L
SER
114
C
SER
118
L
PHE
118
C
PHE
122
L
ALA
130
C
ALA
134
L
PHE
139
C
PHE
143
L
TYR
172
C
TYR
176
L
LEU
180
C
LEU
184
L
SER
165
C
SER
169
L
LYS
166
C
LYS
170
L
SER
153
C
SER
157
L
VAL
155
C
VAL
159
L
THR
145
C
THR
149
L
ALA
150
C
ALA
154
L
TYR
191
C
TYR
195
L
HIS
197
C
HIS
201
L
SER
200
C
SER
204
L
VAL
206
C
VAL
210
4
P 1 21 1