data_4ROO # _entry.id 4ROO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4ROO pdb_00004roo 10.2210/pdb4roo/pdb NDB NA3268 ? ? RCSB RCSB087605 ? ? WWPDB D_1000087605 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4RNK 'Sequence and structure of a self-assembled 3-D DNA crystal: D(GGAAAATTTGGAG)' unspecified PDB 1P1Y 'Crystal structure of a continuous three-dimensional DNA lattice.' unspecified PDB 4RO4 . unspecified PDB 4RO7 . unspecified PDB 4RO8 . unspecified PDB 4ROG . unspecified PDB 4ROK . unspecified PDB 4RON . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4ROO _pdbx_database_status.recvd_initial_deposition_date 2014-10-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Saoji, M.M.' 1 'Paukstelis, P.J.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Probing the role of sequence in the assembly of three-dimensional DNA crystals.' Biopolymers 103 618 626 2015 BIPMAA US 0006-3525 0161 ? 26015367 10.1002/bip.22688 1 'Crystal structure of a continuous three-dimensional DNA lattice.' Chem.Biol. 11 1119 1126 2004 CBOLE2 UK 1074-5521 2050 ? 15324813 10.1016/j.chembiol.2004.05.021 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Saoji, M.' 1 ? primary 'Zhang, D.' 2 ? primary 'Paukstelis, P.J.' 3 ? 1 'Paukstelis, P.J.' 4 ? 1 'Nowakowski, J.' 5 ? 1 'Birktoft, J.J.' 6 ? 1 'Seeman, N.C.' 7 ? # _cell.entry_id 4ROO _cell.length_a 40.789 _cell.length_b 40.789 _cell.length_c 52.007 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4ROO _symmetry.space_group_name_H-M 'P 64' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'D(GGACCGCGGGGAG)' 4082.647 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DA)(DC)(DC)(DG)(DC)(DG)(DG)(DG)(DG)(DA)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGACCGCGGGGAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DA n 1 4 DC n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DG n 1 12 DA n 1 13 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA molecule synthesized using a DNA synthesizer.' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4ROO _struct_ref.pdbx_db_accession 4ROO _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GGACCGCGGGGAG _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4ROO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 13 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4ROO _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 13 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.entry_id 4ROO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.06 _exptl_crystal.density_percent_sol 59.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '120mM Magnesium Formate, 50mM Lithium Chloride, 10% MPD, pH none, EVAPORATION, temperature 298K' _exptl_crystal_grow.pdbx_pH_range none # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.pdbx_collection_date 2014-06-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979200 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979200 # _reflns.entry_id 4ROO _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 52.01 _reflns.d_resolution_high 2.37 _reflns.number_obs 1999 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.025 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.37 _reflns_shell.d_res_low 2.50 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 1.257 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 0.9 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 291 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4ROO _refine.ls_number_reflns_obs 1772 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.32 _refine.ls_d_res_high 2.37 _refine.ls_percent_reflns_obs 96.44 _refine.ls_R_factor_obs 0.24356 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23730 _refine.ls_R_factor_R_free 0.30136 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.3 _refine.ls_number_reflns_R_free 181 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 79.754 _refine.aniso_B[1][1] -1.12 _refine.aniso_B[2][2] -1.12 _refine.aniso_B[3][3] 3.63 _refine.aniso_B[1][2] -0.56 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii 0.70 _refine.pdbx_solvent_shrinkage_radii 0.70 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1p1y _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.343 _refine.pdbx_overall_ESU_R_Free 0.284 _refine.overall_SU_ML 0.315 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 17.893 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 254 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 255 _refine_hist.d_res_high 2.37 _refine_hist.d_res_low 35.32 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.008 0.011 ? 286 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.003 0.020 ? 133 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.439 1.144 ? 442 ? 'X-RAY DIFFRACTION' r_angle_other_deg 1.664 3.000 ? 313 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.080 0.200 ? 36 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.012 0.020 ? 155 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.002 0.020 ? 70 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it 5.749 8.531 ? 286 ? 'X-RAY DIFFRACTION' r_scbond_other 5.723 8.498 ? 284 ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other 9.262 12.806 ? 439 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 12.269 82.365 ? 428 ? 'X-RAY DIFFRACTION' r_long_range_B_other 12.255 82.314 ? 429 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.373 _refine_ls_shell.d_res_low 2.435 _refine_ls_shell.number_reflns_R_work 128 _refine_ls_shell.R_factor_R_work 0.011 _refine_ls_shell.percent_reflns_obs 95.27 _refine_ls_shell.R_factor_R_free 0.894 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 13 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4ROO _struct.title 'Sequence and structure of a self-assembled 3-D DNA crystal: D(GGACCGCGGGGAG)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4ROO _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Self-assembling 3D DNA crystal, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 4 A DG 9 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 4 A DG 9 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 4 A DG 9 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 5 A DG 8 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 5 A DG 8 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 5 A DG 8 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 6 A DC 7 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 6 A DC 7 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 6 A DC 7 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 7 A DG 6 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 7 A DG 6 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 7 A DG 6 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 8 A DC 5 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 8 A DC 5 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 8 A DC 5 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 9 A DC 4 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 9 A DC 4 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 9 A DC 4 4_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 4ROO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4ROO _atom_sites.fract_transf_matrix[1][1] 0.024516 _atom_sites.fract_transf_matrix[1][2] 0.014155 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028309 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019228 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 1.157 -22.178 7.593 1.00 96.29 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 0.225 -23.165 7.108 1.00 95.96 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 0.394 -23.350 5.618 1.00 90.68 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 0.139 -22.091 4.940 1.00 87.28 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 1.808 -23.766 5.222 1.00 86.02 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 1.716 -24.742 4.185 1.00 84.23 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 2.453 -22.446 4.828 1.00 85.52 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 1.289 -21.702 4.200 1.00 81.64 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 1.368 -20.242 4.213 1.00 77.81 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 1.409 -19.421 3.112 1.00 78.96 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 1.459 -18.153 3.420 1.00 74.60 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 1.443 -18.135 4.807 1.00 74.18 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 1.490 -17.042 5.715 1.00 76.40 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 1.536 -15.827 5.467 1.00 85.26 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 1.476 -17.476 7.034 1.00 70.80 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 1.411 -18.785 7.430 1.00 73.62 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 1.402 -18.997 8.745 1.00 82.02 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 1.367 -19.811 6.600 1.00 74.14 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 1.392 -19.416 5.312 1.00 76.13 ? 1 DG A C4 1 ATOM 20 P P . DG A 1 2 ? 3.046 -25.484 3.640 1.00 98.87 ? 2 DG A P 1 ATOM 21 O OP1 . DG A 1 2 ? 2.607 -26.512 2.648 1.00 96.31 ? 2 DG A OP1 1 ATOM 22 O OP2 . DG A 1 2 ? 3.850 -25.900 4.810 1.00 93.93 ? 2 DG A OP2 1 ATOM 23 O "O5'" . DG A 1 2 ? 3.872 -24.332 2.884 1.00 94.94 ? 2 DG A "O5'" 1 ATOM 24 C "C5'" . DG A 1 2 ? 3.331 -23.656 1.709 1.00 88.06 ? 2 DG A "C5'" 1 ATOM 25 C "C4'" . DG A 1 2 ? 4.255 -22.597 1.145 1.00 83.17 ? 2 DG A "C4'" 1 ATOM 26 O "O4'" . DG A 1 2 ? 4.116 -21.327 1.843 1.00 79.53 ? 2 DG A "O4'" 1 ATOM 27 C "C3'" . DG A 1 2 ? 5.746 -22.931 1.175 1.00 77.91 ? 2 DG A "C3'" 1 ATOM 28 O "O3'" . DG A 1 2 ? 6.359 -22.415 -0.007 1.00 72.10 ? 2 DG A "O3'" 1 ATOM 29 C "C2'" . DG A 1 2 ? 6.235 -22.163 2.385 1.00 76.92 ? 2 DG A "C2'" 1 ATOM 30 C "C1'" . DG A 1 2 ? 5.384 -20.904 2.299 1.00 71.97 ? 2 DG A "C1'" 1 ATOM 31 N N9 . DG A 1 2 ? 5.209 -20.241 3.581 1.00 66.11 ? 2 DG A N9 1 ATOM 32 C C8 . DG A 1 2 ? 5.289 -20.809 4.829 1.00 62.87 ? 2 DG A C8 1 ATOM 33 N N7 . DG A 1 2 ? 5.168 -19.940 5.793 1.00 61.31 ? 2 DG A N7 1 ATOM 34 C C5 . DG A 1 2 ? 5.015 -18.727 5.143 1.00 58.68 ? 2 DG A C5 1 ATOM 35 C C6 . DG A 1 2 ? 4.829 -17.432 5.666 1.00 65.93 ? 2 DG A C6 1 ATOM 36 O O6 . DG A 1 2 ? 4.764 -17.084 6.851 1.00 80.42 ? 2 DG A O6 1 ATOM 37 N N1 . DG A 1 2 ? 4.742 -16.479 4.656 1.00 66.34 ? 2 DG A N1 1 ATOM 38 C C2 . DG A 1 2 ? 4.815 -16.749 3.313 1.00 65.70 ? 2 DG A C2 1 ATOM 39 N N2 . DG A 1 2 ? 4.710 -15.697 2.494 1.00 68.47 ? 2 DG A N2 1 ATOM 40 N N3 . DG A 1 2 ? 4.952 -17.964 2.811 1.00 61.11 ? 2 DG A N3 1 ATOM 41 C C4 . DG A 1 2 ? 5.045 -18.896 3.777 1.00 60.69 ? 2 DG A C4 1 ATOM 42 P P . DA A 1 3 ? 7.009 -23.406 -1.053 1.00 73.53 ? 3 DA A P 1 ATOM 43 O OP1 . DA A 1 3 ? 6.021 -24.462 -1.339 1.00 81.40 ? 3 DA A OP1 1 ATOM 44 O OP2 . DA A 1 3 ? 8.362 -23.783 -0.561 1.00 77.87 ? 3 DA A OP2 1 ATOM 45 O "O5'" . DA A 1 3 ? 6.992 -22.548 -2.391 1.00 72.10 ? 3 DA A "O5'" 1 ATOM 46 C "C5'" . DA A 1 3 ? 5.711 -22.172 -2.913 1.00 72.80 ? 3 DA A "C5'" 1 ATOM 47 C "C4'" . DA A 1 3 ? 5.815 -21.259 -4.114 1.00 72.41 ? 3 DA A "C4'" 1 ATOM 48 O "O4'" . DA A 1 3 ? 6.031 -19.891 -3.688 1.00 72.74 ? 3 DA A "O4'" 1 ATOM 49 C "C3'" . DA A 1 3 ? 6.933 -21.566 -5.102 1.00 71.69 ? 3 DA A "C3'" 1 ATOM 50 O "O3'" . DA A 1 3 ? 6.510 -21.233 -6.454 1.00 81.72 ? 3 DA A "O3'" 1 ATOM 51 C "C2'" . DA A 1 3 ? 8.056 -20.684 -4.575 1.00 71.34 ? 3 DA A "C2'" 1 ATOM 52 C "C1'" . DA A 1 3 ? 7.324 -19.448 -4.071 1.00 66.58 ? 3 DA A "C1'" 1 ATOM 53 N N9 . DA A 1 3 ? 7.877 -18.727 -2.929 1.00 64.33 ? 3 DA A N9 1 ATOM 54 C C8 . DA A 1 3 ? 7.882 -19.121 -1.612 1.00 64.15 ? 3 DA A C8 1 ATOM 55 N N7 . DA A 1 3 ? 8.344 -18.207 -0.789 1.00 61.54 ? 3 DA A N7 1 ATOM 56 C C5 . DA A 1 3 ? 8.625 -17.128 -1.614 1.00 61.08 ? 3 DA A C5 1 ATOM 57 C C6 . DA A 1 3 ? 9.117 -15.837 -1.347 1.00 62.65 ? 3 DA A C6 1 ATOM 58 N N6 . DA A 1 3 ? 9.447 -15.413 -0.130 1.00 65.88 ? 3 DA A N6 1 ATOM 59 N N1 . DA A 1 3 ? 9.249 -14.983 -2.386 1.00 64.00 ? 3 DA A N1 1 ATOM 60 C C2 . DA A 1 3 ? 8.916 -15.415 -3.612 1.00 68.56 ? 3 DA A C2 1 ATOM 61 N N3 . DA A 1 3 ? 8.438 -16.608 -3.990 1.00 65.13 ? 3 DA A N3 1 ATOM 62 C C4 . DA A 1 3 ? 8.311 -17.424 -2.930 1.00 63.02 ? 3 DA A C4 1 ATOM 63 P P . DC A 1 4 ? 5.921 -22.363 -7.537 1.00 88.12 ? 4 DC A P 1 ATOM 64 O OP1 . DC A 1 4 ? 6.189 -21.859 -8.916 1.00 90.73 ? 4 DC A OP1 1 ATOM 65 O OP2 . DC A 1 4 ? 4.522 -22.703 -7.158 1.00 75.75 ? 4 DC A OP2 1 ATOM 66 O "O5'" . DC A 1 4 ? 6.929 -23.596 -7.382 1.00 91.19 ? 4 DC A "O5'" 1 ATOM 67 C "C5'" . DC A 1 4 ? 6.496 -24.976 -7.299 1.00 90.45 ? 4 DC A "C5'" 1 ATOM 68 C "C4'" . DC A 1 4 ? 7.447 -25.859 -8.076 1.00 89.45 ? 4 DC A "C4'" 1 ATOM 69 O "O4'" . DC A 1 4 ? 6.847 -26.214 -9.346 1.00 90.23 ? 4 DC A "O4'" 1 ATOM 70 C "C3'" . DC A 1 4 ? 8.778 -25.207 -8.439 1.00 86.33 ? 4 DC A "C3'" 1 ATOM 71 O "O3'" . DC A 1 4 ? 9.801 -26.199 -8.550 1.00 89.12 ? 4 DC A "O3'" 1 ATOM 72 C "C2'" . DC A 1 4 ? 8.475 -24.562 -9.780 1.00 84.94 ? 4 DC A "C2'" 1 ATOM 73 C "C1'" . DC A 1 4 ? 7.539 -25.578 -10.422 1.00 82.45 ? 4 DC A "C1'" 1 ATOM 74 N N1 . DC A 1 4 ? 6.524 -25.031 -11.343 1.00 75.86 ? 4 DC A N1 1 ATOM 75 C C2 . DC A 1 4 ? 6.695 -25.173 -12.730 1.00 76.43 ? 4 DC A C2 1 ATOM 76 O O2 . DC A 1 4 ? 7.721 -25.724 -13.159 1.00 76.45 ? 4 DC A O2 1 ATOM 77 N N3 . DC A 1 4 ? 5.741 -24.694 -13.565 1.00 71.45 ? 4 DC A N3 1 ATOM 78 C C4 . DC A 1 4 ? 4.642 -24.121 -13.063 1.00 72.24 ? 4 DC A C4 1 ATOM 79 N N4 . DC A 1 4 ? 3.730 -23.659 -13.918 1.00 76.36 ? 4 DC A N4 1 ATOM 80 C C5 . DC A 1 4 ? 4.437 -23.980 -11.661 1.00 71.00 ? 4 DC A C5 1 ATOM 81 C C6 . DC A 1 4 ? 5.390 -24.452 -10.845 1.00 74.66 ? 4 DC A C6 1 ATOM 82 P P . DC A 1 5 ? 11.334 -25.795 -8.303 1.00 107.54 ? 5 DC A P 1 ATOM 83 O OP1 . DC A 1 5 ? 11.718 -26.296 -6.952 1.00 104.35 ? 5 DC A OP1 1 ATOM 84 O OP2 . DC A 1 5 ? 11.527 -24.356 -8.675 1.00 113.70 ? 5 DC A OP2 1 ATOM 85 O "O5'" . DC A 1 5 ? 12.108 -26.489 -9.504 1.00 104.86 ? 5 DC A "O5'" 1 ATOM 86 C "C5'" . DC A 1 5 ? 11.610 -26.334 -10.842 1.00 110.46 ? 5 DC A "C5'" 1 ATOM 87 C "C4'" . DC A 1 5 ? 12.718 -26.006 -11.814 1.00 112.83 ? 5 DC A "C4'" 1 ATOM 88 O "O4'" . DC A 1 5 ? 12.135 -25.317 -12.942 1.00 110.03 ? 5 DC A "O4'" 1 ATOM 89 C "C3'" . DC A 1 5 ? 13.788 -25.046 -11.311 1.00 117.28 ? 5 DC A "C3'" 1 ATOM 90 O "O3'" . DC A 1 5 ? 14.881 -25.235 -12.228 1.00 123.08 ? 5 DC A "O3'" 1 ATOM 91 C "C2'" . DC A 1 5 ? 13.074 -23.713 -11.451 1.00 112.61 ? 5 DC A "C2'" 1 ATOM 92 C "C1'" . DC A 1 5 ? 12.321 -23.909 -12.775 1.00 107.11 ? 5 DC A "C1'" 1 ATOM 93 N N1 . DC A 1 5 ? 11.003 -23.264 -12.919 1.00 93.52 ? 5 DC A N1 1 ATOM 94 C C2 . DC A 1 5 ? 10.407 -23.263 -14.189 1.00 90.51 ? 5 DC A C2 1 ATOM 95 O O2 . DC A 1 5 ? 11.016 -23.795 -15.139 1.00 87.88 ? 5 DC A O2 1 ATOM 96 N N3 . DC A 1 5 ? 9.192 -22.685 -14.350 1.00 78.95 ? 5 DC A N3 1 ATOM 97 C C4 . DC A 1 5 ? 8.574 -22.133 -13.302 1.00 85.00 ? 5 DC A C4 1 ATOM 98 N N4 . DC A 1 5 ? 7.380 -21.571 -13.502 1.00 87.50 ? 5 DC A N4 1 ATOM 99 C C5 . DC A 1 5 ? 9.157 -22.126 -11.997 1.00 81.75 ? 5 DC A C5 1 ATOM 100 C C6 . DC A 1 5 ? 10.362 -22.691 -11.855 1.00 87.09 ? 5 DC A C6 1 ATOM 101 P P . DG A 1 6 ? 16.243 -24.395 -12.109 1.00 118.58 ? 6 DG A P 1 ATOM 102 O OP1 . DG A 1 6 ? 17.367 -25.375 -12.114 1.00 128.34 ? 6 DG A OP1 1 ATOM 103 O OP2 . DG A 1 6 ? 16.098 -23.477 -10.946 1.00 119.45 ? 6 DG A OP2 1 ATOM 104 O "O5'" . DG A 1 6 ? 16.334 -23.650 -13.525 1.00 107.47 ? 6 DG A "O5'" 1 ATOM 105 C "C5'" . DG A 1 6 ? 16.693 -24.408 -14.709 1.00 106.93 ? 6 DG A "C5'" 1 ATOM 106 C "C4'" . DG A 1 6 ? 16.403 -23.651 -15.985 1.00 106.35 ? 6 DG A "C4'" 1 ATOM 107 O "O4'" . DG A 1 6 ? 15.043 -23.148 -15.983 1.00 100.85 ? 6 DG A "O4'" 1 ATOM 108 C "C3'" . DG A 1 6 ? 17.293 -22.429 -16.190 1.00 108.14 ? 6 DG A "C3'" 1 ATOM 109 O "O3'" . DG A 1 6 ? 17.522 -22.157 -17.573 1.00 114.63 ? 6 DG A "O3'" 1 ATOM 110 C "C2'" . DG A 1 6 ? 16.472 -21.320 -15.574 1.00 106.03 ? 6 DG A "C2'" 1 ATOM 111 C "C1'" . DG A 1 6 ? 15.064 -21.725 -15.983 1.00 98.09 ? 6 DG A "C1'" 1 ATOM 112 N N9 . DG A 1 6 ? 14.050 -21.249 -15.049 1.00 85.47 ? 6 DG A N9 1 ATOM 113 C C8 . DG A 1 6 ? 14.132 -21.233 -13.675 1.00 81.28 ? 6 DG A C8 1 ATOM 114 N N7 . DG A 1 6 ? 13.077 -20.713 -13.105 1.00 78.47 ? 6 DG A N7 1 ATOM 115 C C5 . DG A 1 6 ? 12.260 -20.343 -14.167 1.00 77.32 ? 6 DG A C5 1 ATOM 116 C C6 . DG A 1 6 ? 10.979 -19.718 -14.173 1.00 77.77 ? 6 DG A C6 1 ATOM 117 O O6 . DG A 1 6 ? 10.293 -19.344 -13.208 1.00 78.45 ? 6 DG A O6 1 ATOM 118 N N1 . DG A 1 6 ? 10.510 -19.526 -15.469 1.00 68.81 ? 6 DG A N1 1 ATOM 119 C C2 . DG A 1 6 ? 11.177 -19.888 -16.610 1.00 68.59 ? 6 DG A C2 1 ATOM 120 N N2 . DG A 1 6 ? 10.554 -19.612 -17.760 1.00 70.03 ? 6 DG A N2 1 ATOM 121 N N3 . DG A 1 6 ? 12.373 -20.461 -16.622 1.00 71.49 ? 6 DG A N3 1 ATOM 122 C C4 . DG A 1 6 ? 12.852 -20.655 -15.374 1.00 77.60 ? 6 DG A C4 1 ATOM 123 P P . DC A 1 7 ? 18.638 -21.073 -17.993 1.00 131.71 ? 7 DC A P 1 ATOM 124 O OP1 . DC A 1 7 ? 19.891 -21.792 -18.363 1.00 139.22 ? 7 DC A OP1 1 ATOM 125 O OP2 . DC A 1 7 ? 18.675 -20.003 -16.952 1.00 126.29 ? 7 DC A OP2 1 ATOM 126 O "O5'" . DC A 1 7 ? 18.103 -20.512 -19.379 1.00 123.02 ? 7 DC A "O5'" 1 ATOM 127 C "C5'" . DC A 1 7 ? 16.975 -21.097 -20.044 1.00 119.85 ? 7 DC A "C5'" 1 ATOM 128 C "C4'" . DC A 1 7 ? 16.093 -19.978 -20.539 1.00 116.59 ? 7 DC A "C4'" 1 ATOM 129 O "O4'" . DC A 1 7 ? 15.120 -19.649 -19.515 1.00 113.39 ? 7 DC A "O4'" 1 ATOM 130 C "C3'" . DC A 1 7 ? 16.860 -18.683 -20.843 1.00 111.89 ? 7 DC A "C3'" 1 ATOM 131 O "O3'" . DC A 1 7 ? 16.552 -18.254 -22.178 1.00 116.16 ? 7 DC A "O3'" 1 ATOM 132 C "C2'" . DC A 1 7 ? 16.455 -17.757 -19.709 1.00 107.68 ? 7 DC A "C2'" 1 ATOM 133 C "C1'" . DC A 1 7 ? 15.049 -18.239 -19.396 1.00 104.78 ? 7 DC A "C1'" 1 ATOM 134 N N1 . DC A 1 7 ? 14.557 -17.916 -18.042 1.00 90.06 ? 7 DC A N1 1 ATOM 135 C C2 . DC A 1 7 ? 13.308 -17.289 -17.891 1.00 83.94 ? 7 DC A C2 1 ATOM 136 O O2 . DC A 1 7 ? 12.638 -17.031 -18.905 1.00 75.77 ? 7 DC A O2 1 ATOM 137 N N3 . DC A 1 7 ? 12.862 -16.995 -16.645 1.00 79.05 ? 7 DC A N3 1 ATOM 138 C C4 . DC A 1 7 ? 13.616 -17.291 -15.579 1.00 85.37 ? 7 DC A C4 1 ATOM 139 N N4 . DC A 1 7 ? 13.140 -16.987 -14.365 1.00 83.51 ? 7 DC A N4 1 ATOM 140 C C5 . DC A 1 7 ? 14.885 -17.930 -15.707 1.00 84.37 ? 7 DC A C5 1 ATOM 141 C C6 . DC A 1 7 ? 15.312 -18.221 -16.944 1.00 86.71 ? 7 DC A C6 1 ATOM 142 P P . DG A 1 8 ? 16.653 -16.713 -22.588 1.00 124.04 ? 8 DG A P 1 ATOM 143 O OP1 . DG A 1 8 ? 16.567 -16.596 -24.081 1.00 121.50 ? 8 DG A OP1 1 ATOM 144 O OP2 . DG A 1 8 ? 17.829 -16.139 -21.878 1.00 122.87 ? 8 DG A OP2 1 ATOM 145 O "O5'" . DG A 1 8 ? 15.279 -16.148 -22.020 1.00 118.56 ? 8 DG A "O5'" 1 ATOM 146 C "C5'" . DG A 1 8 ? 14.034 -16.364 -22.712 1.00 122.69 ? 8 DG A "C5'" 1 ATOM 147 C "C4'" . DG A 1 8 ? 13.414 -15.020 -23.005 1.00 122.01 ? 8 DG A "C4'" 1 ATOM 148 O "O4'" . DG A 1 8 ? 13.184 -14.324 -21.758 1.00 123.05 ? 8 DG A "O4'" 1 ATOM 149 C "C3'" . DG A 1 8 ? 14.308 -14.079 -23.795 1.00 115.90 ? 8 DG A "C3'" 1 ATOM 150 O "O3'" . DG A 1 8 ? 13.445 -13.080 -24.315 1.00 123.04 ? 8 DG A "O3'" 1 ATOM 151 C "C2'" . DG A 1 8 ? 15.177 -13.458 -22.718 1.00 107.51 ? 8 DG A "C2'" 1 ATOM 152 C "C1'" . DG A 1 8 ? 14.219 -13.361 -21.530 1.00 106.21 ? 8 DG A "C1'" 1 ATOM 153 N N9 . DG A 1 8 ? 14.820 -13.642 -20.227 1.00 92.05 ? 8 DG A N9 1 ATOM 154 C C8 . DG A 1 8 ? 16.097 -14.095 -19.991 1.00 92.17 ? 8 DG A C8 1 ATOM 155 N N7 . DG A 1 8 ? 16.355 -14.266 -18.721 1.00 87.12 ? 8 DG A N7 1 ATOM 156 C C5 . DG A 1 8 ? 15.179 -13.906 -18.079 1.00 80.25 ? 8 DG A C5 1 ATOM 157 C C6 . DG A 1 8 ? 14.866 -13.872 -16.696 1.00 77.79 ? 8 DG A C6 1 ATOM 158 O O6 . DG A 1 8 ? 15.591 -14.169 -15.735 1.00 74.87 ? 8 DG A O6 1 ATOM 159 N N1 . DG A 1 8 ? 13.563 -13.428 -16.477 1.00 71.43 ? 8 DG A N1 1 ATOM 160 C C2 . DG A 1 8 ? 12.678 -13.060 -17.463 1.00 78.57 ? 8 DG A C2 1 ATOM 161 N N2 . DG A 1 8 ? 11.465 -12.660 -17.047 1.00 75.60 ? 8 DG A N2 1 ATOM 162 N N3 . DG A 1 8 ? 12.963 -13.076 -18.760 1.00 78.44 ? 8 DG A N3 1 ATOM 163 C C4 . DG A 1 8 ? 14.223 -13.508 -18.993 1.00 83.66 ? 8 DG A C4 1 ATOM 164 P P . DG A 1 9 ? 14.060 -11.848 -25.073 1.00 128.20 ? 9 DG A P 1 ATOM 165 O OP1 . DG A 1 9 ? 13.736 -11.996 -26.527 1.00 130.28 ? 9 DG A OP1 1 ATOM 166 O OP2 . DG A 1 9 ? 15.466 -11.691 -24.611 1.00 124.34 ? 9 DG A OP2 1 ATOM 167 O "O5'" . DG A 1 9 ? 13.227 -10.610 -24.526 1.00 111.04 ? 9 DG A "O5'" 1 ATOM 168 C "C5'" . DG A 1 9 ? 11.804 -10.657 -24.416 1.00 103.05 ? 9 DG A "C5'" 1 ATOM 169 C "C4'" . DG A 1 9 ? 11.431 -9.899 -23.170 1.00 100.29 ? 9 DG A "C4'" 1 ATOM 170 O "O4'" . DG A 1 9 ? 12.227 -10.407 -22.080 1.00 95.58 ? 9 DG A "O4'" 1 ATOM 171 C "C3'" . DG A 1 9 ? 11.755 -8.404 -23.256 1.00 102.23 ? 9 DG A "C3'" 1 ATOM 172 O "O3'" . DG A 1 9 ? 10.552 -7.636 -23.364 1.00 106.88 ? 9 DG A "O3'" 1 ATOM 173 C "C2'" . DG A 1 9 ? 12.552 -8.105 -21.989 1.00 98.70 ? 9 DG A "C2'" 1 ATOM 174 C "C1'" . DG A 1 9 ? 12.382 -9.353 -21.148 1.00 89.47 ? 9 DG A "C1'" 1 ATOM 175 N N9 . DG A 1 9 ? 13.484 -9.697 -20.254 1.00 73.28 ? 9 DG A N9 1 ATOM 176 C C8 . DG A 1 9 ? 14.734 -10.158 -20.592 1.00 74.13 ? 9 DG A C8 1 ATOM 177 N N7 . DG A 1 9 ? 15.483 -10.419 -19.555 1.00 67.19 ? 9 DG A N7 1 ATOM 178 C C5 . DG A 1 9 ? 14.669 -10.137 -18.468 1.00 65.31 ? 9 DG A C5 1 ATOM 179 C C6 . DG A 1 9 ? 14.931 -10.231 -17.074 1.00 66.89 ? 9 DG A C6 1 ATOM 180 O O6 . DG A 1 9 ? 15.972 -10.602 -16.507 1.00 62.41 ? 9 DG A O6 1 ATOM 181 N N1 . DG A 1 9 ? 13.824 -9.846 -16.318 1.00 65.43 ? 9 DG A N1 1 ATOM 182 C C2 . DG A 1 9 ? 12.630 -9.397 -16.838 1.00 67.66 ? 9 DG A C2 1 ATOM 183 N N2 . DG A 1 9 ? 11.690 -9.052 -15.952 1.00 67.73 ? 9 DG A N2 1 ATOM 184 N N3 . DG A 1 9 ? 12.372 -9.313 -18.135 1.00 67.61 ? 9 DG A N3 1 ATOM 185 C C4 . DG A 1 9 ? 13.429 -9.696 -18.885 1.00 68.59 ? 9 DG A C4 1 ATOM 186 P P . DG A 1 10 ? 10.645 -6.069 -23.656 1.00 116.32 ? 10 DG A P 1 ATOM 187 O OP1 . DG A 1 10 ? 9.327 -5.601 -24.206 1.00 116.58 ? 10 DG A OP1 1 ATOM 188 O OP2 . DG A 1 10 ? 11.904 -5.828 -24.437 1.00 113.46 ? 10 DG A OP2 1 ATOM 189 O "O5'" . DG A 1 10 ? 10.770 -5.471 -22.183 1.00 105.80 ? 10 DG A "O5'" 1 ATOM 190 C "C5'" . DG A 1 10 ? 9.736 -5.715 -21.218 1.00 99.80 ? 10 DG A "C5'" 1 ATOM 191 C "C4'" . DG A 1 10 ? 9.986 -4.931 -19.951 1.00 97.22 ? 10 DG A "C4'" 1 ATOM 192 O "O4'" . DG A 1 10 ? 11.050 -5.576 -19.215 1.00 92.59 ? 10 DG A "O4'" 1 ATOM 193 C "C3'" . DG A 1 10 ? 10.436 -3.480 -20.138 1.00 92.40 ? 10 DG A "C3'" 1 ATOM 194 O "O3'" . DG A 1 10 ? 10.049 -2.688 -19.001 1.00 97.75 ? 10 DG A "O3'" 1 ATOM 195 C "C2'" . DG A 1 10 ? 11.943 -3.610 -20.142 1.00 84.94 ? 10 DG A "C2'" 1 ATOM 196 C "C1'" . DG A 1 10 ? 12.123 -4.665 -19.070 1.00 80.21 ? 10 DG A "C1'" 1 ATOM 197 N N9 . DG A 1 10 ? 13.361 -5.421 -19.138 1.00 73.25 ? 10 DG A N9 1 ATOM 198 C C8 . DG A 1 10 ? 14.135 -5.733 -20.232 1.00 73.40 ? 10 DG A C8 1 ATOM 199 N N7 . DG A 1 10 ? 15.215 -6.400 -19.920 1.00 71.75 ? 10 DG A N7 1 ATOM 200 C C5 . DG A 1 10 ? 15.146 -6.533 -18.539 1.00 68.34 ? 10 DG A C5 1 ATOM 201 C C6 . DG A 1 10 ? 16.032 -7.171 -17.628 1.00 69.80 ? 10 DG A C6 1 ATOM 202 O O6 . DG A 1 10 ? 17.111 -7.742 -17.863 1.00 73.65 ? 10 DG A O6 1 ATOM 203 N N1 . DG A 1 10 ? 15.562 -7.086 -16.322 1.00 63.49 ? 10 DG A N1 1 ATOM 204 C C2 . DG A 1 10 ? 14.405 -6.450 -15.938 1.00 68.67 ? 10 DG A C2 1 ATOM 205 N N2 . DG A 1 10 ? 14.130 -6.455 -14.626 1.00 75.67 ? 10 DG A N2 1 ATOM 206 N N3 . DG A 1 10 ? 13.573 -5.860 -16.775 1.00 62.64 ? 10 DG A N3 1 ATOM 207 C C4 . DG A 1 10 ? 14.004 -5.936 -18.047 1.00 65.92 ? 10 DG A C4 1 ATOM 208 P P . DG A 1 11 ? 9.985 -1.069 -19.084 1.00 103.23 ? 11 DG A P 1 ATOM 209 O OP1 . DG A 1 11 ? 8.703 -0.629 -18.450 1.00 101.42 ? 11 DG A OP1 1 ATOM 210 O OP2 . DG A 1 11 ? 10.366 -0.632 -20.475 1.00 98.32 ? 11 DG A OP2 1 ATOM 211 O "O5'" . DG A 1 11 ? 11.112 -0.610 -18.064 1.00 86.48 ? 11 DG A "O5'" 1 ATOM 212 C "C5'" . DG A 1 11 ? 10.975 -0.953 -16.682 1.00 84.79 ? 11 DG A "C5'" 1 ATOM 213 C "C4'" . DG A 1 11 ? 12.346 -1.065 -16.061 1.00 79.81 ? 11 DG A "C4'" 1 ATOM 214 O "O4'" . DG A 1 11 ? 13.205 -1.855 -16.925 1.00 72.43 ? 11 DG A "O4'" 1 ATOM 215 C "C3'" . DG A 1 11 ? 13.042 0.282 -15.901 1.00 75.59 ? 11 DG A "C3'" 1 ATOM 216 O "O3'" . DG A 1 11 ? 13.752 0.342 -14.665 1.00 75.96 ? 11 DG A "O3'" 1 ATOM 217 C "C2'" . DG A 1 11 ? 13.975 0.319 -17.097 1.00 73.41 ? 11 DG A "C2'" 1 ATOM 218 C "C1'" . DG A 1 11 ? 14.381 -1.133 -17.206 1.00 64.00 ? 11 DG A "C1'" 1 ATOM 219 N N9 . DG A 1 11 ? 14.855 -1.556 -18.516 1.00 57.44 ? 11 DG A N9 1 ATOM 220 C C8 . DG A 1 11 ? 14.433 -1.116 -19.748 1.00 55.08 ? 11 DG A C8 1 ATOM 221 N N7 . DG A 1 11 ? 15.045 -1.708 -20.740 1.00 54.42 ? 11 DG A N7 1 ATOM 222 C C5 . DG A 1 11 ? 15.893 -2.621 -20.124 1.00 57.03 ? 11 DG A C5 1 ATOM 223 C C6 . DG A 1 11 ? 16.808 -3.553 -20.685 1.00 60.17 ? 11 DG A C6 1 ATOM 224 O O6 . DG A 1 11 ? 17.058 -3.762 -21.874 1.00 66.62 ? 11 DG A O6 1 ATOM 225 N N1 . DG A 1 11 ? 17.507 -4.246 -19.699 1.00 60.06 ? 11 DG A N1 1 ATOM 226 C C2 . DG A 1 11 ? 17.329 -4.087 -18.345 1.00 59.78 ? 11 DG A C2 1 ATOM 227 N N2 . DG A 1 11 ? 18.086 -4.864 -17.548 1.00 61.02 ? 11 DG A N2 1 ATOM 228 N N3 . DG A 1 11 ? 16.452 -3.249 -17.810 1.00 60.25 ? 11 DG A N3 1 ATOM 229 C C4 . DG A 1 11 ? 15.792 -2.535 -18.752 1.00 58.14 ? 11 DG A C4 1 ATOM 230 P P . DA A 1 12 ? 14.047 1.755 -14.017 1.00 81.22 ? 12 DA A P 1 ATOM 231 O OP1 . DA A 1 12 ? 12.766 2.506 -13.959 1.00 82.65 ? 12 DA A OP1 1 ATOM 232 O OP2 . DA A 1 12 ? 15.216 2.373 -14.703 1.00 81.25 ? 12 DA A OP2 1 ATOM 233 O "O5'" . DA A 1 12 ? 14.585 1.333 -12.589 1.00 80.33 ? 12 DA A "O5'" 1 ATOM 234 C "C5'" . DA A 1 12 ? 13.728 0.664 -11.667 1.00 87.39 ? 12 DA A "C5'" 1 ATOM 235 C "C4'" . DA A 1 12 ? 14.583 -0.274 -10.857 1.00 93.34 ? 12 DA A "C4'" 1 ATOM 236 O "O4'" . DA A 1 12 ? 15.422 -0.980 -11.792 1.00 92.96 ? 12 DA A "O4'" 1 ATOM 237 C "C3'" . DA A 1 12 ? 15.535 0.437 -9.888 1.00 102.51 ? 12 DA A "C3'" 1 ATOM 238 O "O3'" . DA A 1 12 ? 15.514 -0.191 -8.597 1.00 114.18 ? 12 DA A "O3'" 1 ATOM 239 C "C2'" . DA A 1 12 ? 16.885 0.382 -10.589 1.00 92.99 ? 12 DA A "C2'" 1 ATOM 240 C "C1'" . DA A 1 12 ? 16.763 -0.902 -11.359 1.00 84.27 ? 12 DA A "C1'" 1 ATOM 241 N N9 . DA A 1 12 ? 17.601 -1.038 -12.532 1.00 73.20 ? 12 DA A N9 1 ATOM 242 C C8 . DA A 1 12 ? 17.278 -0.900 -13.858 1.00 67.14 ? 12 DA A C8 1 ATOM 243 N N7 . DA A 1 12 ? 18.270 -1.174 -14.670 1.00 62.69 ? 12 DA A N7 1 ATOM 244 C C5 . DA A 1 12 ? 19.295 -1.566 -13.821 1.00 58.71 ? 12 DA A C5 1 ATOM 245 C C6 . DA A 1 12 ? 20.595 -2.010 -14.062 1.00 57.18 ? 12 DA A C6 1 ATOM 246 N N6 . DA A 1 12 ? 21.113 -2.134 -15.276 1.00 60.89 ? 12 DA A N6 1 ATOM 247 N N1 . DA A 1 12 ? 21.359 -2.332 -12.999 1.00 61.30 ? 12 DA A N1 1 ATOM 248 C C2 . DA A 1 12 ? 20.840 -2.197 -11.777 1.00 65.11 ? 12 DA A C2 1 ATOM 249 N N3 . DA A 1 12 ? 19.626 -1.788 -11.421 1.00 67.91 ? 12 DA A N3 1 ATOM 250 C C4 . DA A 1 12 ? 18.890 -1.502 -12.505 1.00 66.46 ? 12 DA A C4 1 ATOM 251 P P . DG A 1 13 ? 14.905 0.596 -7.333 1.00 111.07 ? 13 DG A P 1 ATOM 252 O OP1 . DG A 1 13 ? 15.237 -0.213 -6.132 1.00 111.15 ? 13 DG A OP1 1 ATOM 253 O OP2 . DG A 1 13 ? 13.474 0.943 -7.638 1.00 103.61 ? 13 DG A OP2 1 ATOM 254 O "O5'" . DG A 1 13 ? 15.763 1.942 -7.299 1.00 101.32 ? 13 DG A "O5'" 1 HETATM 255 MG MG . MG B 2 . ? 8.828 -27.098 1.408 1.00 82.02 ? 101 MG A MG 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DG 13 13 13 DG DG A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id MG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id MG _pdbx_nonpoly_scheme.auth_mon_id MG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1.0000000000 0.0000000000 0.0000000000 20.3945000000 0.0000000000 -1.0000000000 0.0000000000 -35.3243101950 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-06-17 2 'Structure model' 1 1 2015-09-09 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _software.name REFMAC _software.classification refinement _software.version 5.8.0073 _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 5 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 5 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 5 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.73 _pdbx_validate_rmsd_angle.angle_target_value 105.70 _pdbx_validate_rmsd_angle.angle_deviation -5.97 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DG 13 ? "C5'" ? A DG 13 "C5'" 2 1 Y 1 A DG 13 ? "C4'" ? A DG 13 "C4'" 3 1 Y 1 A DG 13 ? "O4'" ? A DG 13 "O4'" 4 1 Y 1 A DG 13 ? "C3'" ? A DG 13 "C3'" 5 1 Y 1 A DG 13 ? "O3'" ? A DG 13 "O3'" 6 1 Y 1 A DG 13 ? "C2'" ? A DG 13 "C2'" 7 1 Y 1 A DG 13 ? "C1'" ? A DG 13 "C1'" 8 1 Y 1 A DG 13 ? N9 ? A DG 13 N9 9 1 Y 1 A DG 13 ? C8 ? A DG 13 C8 10 1 Y 1 A DG 13 ? N7 ? A DG 13 N7 11 1 Y 1 A DG 13 ? C5 ? A DG 13 C5 12 1 Y 1 A DG 13 ? C6 ? A DG 13 C6 13 1 Y 1 A DG 13 ? O6 ? A DG 13 O6 14 1 Y 1 A DG 13 ? N1 ? A DG 13 N1 15 1 Y 1 A DG 13 ? C2 ? A DG 13 C2 16 1 Y 1 A DG 13 ? N2 ? A DG 13 N2 17 1 Y 1 A DG 13 ? N3 ? A DG 13 N3 18 1 Y 1 A DG 13 ? C4 ? A DG 13 C4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 MG MG MG N N 108 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4ROO 'double helix' 4ROO 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 4 1_555 A DG 9 4_545 0.754 -0.281 0.405 1.033 -7.357 -4.263 1 A_DC4:DG9_A A 4 ? A 9 ? 19 1 1 A DC 5 1_555 A DG 8 4_545 -1.394 0.126 -0.042 3.880 -10.450 3.944 2 A_DC5:DG8_A A 5 ? A 8 ? 19 1 1 A DG 6 1_555 A DC 7 4_545 0.668 0.406 0.323 1.470 -4.516 -0.701 3 A_DG6:DC7_A A 6 ? A 7 ? 19 1 1 A DC 7 1_555 A DG 6 4_545 -0.668 0.406 0.323 -1.470 -4.516 -0.701 4 A_DC7:DG6_A A 7 ? A 6 ? 19 1 1 A DG 8 1_555 A DC 5 4_545 1.394 0.126 -0.042 -3.880 -10.450 3.944 5 A_DG8:DC5_A A 8 ? A 5 ? 19 1 1 A DG 9 1_555 A DC 4 4_545 -0.754 -0.281 0.405 -1.033 -7.357 -4.263 6 A_DG9:DC4_A A 9 ? A 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 4 1_555 A DG 9 4_545 A DC 5 1_555 A DG 8 4_545 -0.134 0.184 3.212 6.708 -1.252 27.623 0.656 1.777 3.083 -2.572 -13.783 28.437 1 AA_DC4DC5:DG8DG9_AA A 4 ? A 9 ? A 5 ? A 8 ? 1 A DC 5 1_555 A DG 8 4_545 A DG 6 1_555 A DC 7 4_545 -0.112 1.358 3.543 -7.707 4.747 47.201 1.255 -0.535 3.630 5.866 9.522 48.012 2 AA_DC5DG6:DC7DG8_AA A 5 ? A 8 ? A 6 ? A 7 ? 1 A DG 6 1_555 A DC 7 4_545 A DC 7 1_555 A DG 6 4_545 0.000 -0.384 3.361 0.000 -1.840 28.549 -0.348 0.000 3.379 -3.726 0.000 28.607 3 AA_DG6DC7:DG6DC7_AA A 6 ? A 7 ? A 7 ? A 6 ? 1 A DC 7 1_555 A DG 6 4_545 A DG 8 1_555 A DC 5 4_545 0.112 1.358 3.543 7.707 4.747 47.201 1.255 0.535 3.630 5.866 -9.522 48.012 4 AA_DC7DG8:DC5DG6_AA A 7 ? A 6 ? A 8 ? A 5 ? 1 A DG 8 1_555 A DC 5 4_545 A DG 9 1_555 A DC 4 4_545 0.134 0.184 3.212 -6.708 -1.252 27.623 0.656 -1.777 3.083 -2.572 13.783 28.437 5 AA_DG8DG9:DC4DC5_AA A 8 ? A 5 ? A 9 ? A 4 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'MAGNESIUM ION' _pdbx_entity_nonpoly.comp_id MG # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1P1Y _pdbx_initial_refinement_model.details ? #