0.021235 0.000000 0.000000 0.000000 0.021235 0.000000 0.000000 0.000000 0.008871 0.00000 0.00000 0.00000 Ahmad, S. Muthukumar, S. Sankaranarayanan, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 47.091 47.091 112.729 C14 H21 N7 O5 367.360 3'-deoxy-3'-(L-threonylamino)adenosine non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N N N 3 N O Y 4 N N Y 5 N C Y 6 N N Y 7 N C Y 8 N C Y 9 N C N 10 N N Y 11 N N Y 12 N C N 13 N N Y 14 N N N 15 S C N 16 R C N 17 N O N 18 R C N 19 R C N 20 N O N 21 S C N 22 S C N 23 N O N 24 N C N 25 N O N 26 N C N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N O N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N N N 62 S C N 63 N C N 64 N O N 65 N C N 66 N C N 67 N C N 68 N N N 69 N C N 70 N N N 71 N N N 72 N O N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N O N 95 N N N 96 N O N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N N N 106 S C N 107 N C N 108 N O N 109 N C N 110 N C N 111 N O N 112 N O N 113 N O N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N CL N 122 N N N 123 R C N 124 N C N 125 N O N 126 N C N 127 N S N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 S C N 138 N C N 139 N O N 140 N C N 141 N C N 142 N C N 143 N O N 144 N N N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 S C N 158 N C N 159 N O N 160 N C N 161 N C N 162 N C N 163 N O N 164 N O N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N N N 176 N C N 177 N C N 178 N O N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 N C Y 190 N C Y 191 N N Y 192 N C Y 193 N C Y 194 N N N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N O N 207 N H N 208 N H N 209 N N N 210 S C N 211 N C N 212 N O N 213 S C N 214 N C N 215 N C N 216 N C N 217 N O N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 N C N 258 N C N 259 N C N 260 N C N 261 N N N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N N N 279 S C N 280 N C N 281 N O N 282 N C N 283 N C N 284 N S N 285 N C N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N MG N 299 N N N 300 S C N 301 N C N 302 N O N 303 N C Y 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C N 327 N C N 328 N C N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C N 344 N O N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 R C N 358 N O N 359 N C N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N N Y 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C N 408 N O N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N N N 422 S C N 423 N C N 424 N O N 425 N C N 426 N C N 427 N C N 428 N O N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing Y 5 N doub Y 6 N sing Y 7 N sing Y 8 N doub Y 9 N sing Y 10 N sing Y 11 N doub Y 12 N sing N 13 N sing Y 14 N doub Y 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N doub N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing Y 189 N sing Y 190 N doub Y 191 N doub N 192 N sing Y 193 N sing N 194 N sing Y 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing Y 297 N doub Y 298 N sing Y 299 N sing N 300 N sing Y 301 N doub N 302 N sing Y 303 N doub N 304 N sing Y 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N doub Y 371 N sing Y 372 N sing N 373 N sing Y 374 N sing Y 375 N doub N 376 N sing Y 377 N doub N 378 N sing Y 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N doub N 390 N sing N 391 N sing N 392 N sing N 393 N sing Y 394 N doub Y 395 N sing Y 396 N sing N 397 N sing Y 398 N doub N 399 N sing Y 400 N doub N 401 N sing Y 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing UK Nat Commun 2041-1723 6 7552 7552 10.1038/ncomms8552 26113036 Specificity and catalysis hardwired at the RNA-protein interface in a translational proofreading enzyme. 2015 10.2210/pdb4rrm/pdb pdb_00004rrm 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2013-03-16 RIGAKU RAXIS IV++ Mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 15077.378 Probable threonine--tRNA ligase 2 6.1.1.3 UNP residues 1-136 E129A 1 man polymer 367.360 3'-deoxy-3'-(L-threonylamino)adenosine 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 18.015 water 146 nat water Threonyl-tRNA synthetase 2, ThrRS 2 no no MRLLYLHADRFEYKTVKPALKNPPDPPGEASFGEALVVFTTVEDGDGPQTVMYAASDIASHSSRLKVTTVILYPYAHLSS RLAKPMAAHKRLIELEGALRTKFPGHVHRAPFGWYKSFSIACKGHPLAALSRSFTE MRLLYLHADRFEYKTVKPALKNPPDPPGEASFGEALVVFTTVEDGDGPQTVMYAASDIASHSSRLKVTTVILYPYAHLSS RLAKPMAAHKRLIELEGALRTKFPGHVHRAPFGWYKSFSIACKGHPLAALSRSFTE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1 sample thrS2, APE_0117.1 272557 Aeropyrum pernix K1 562 Escherichia coli 1 2.07 40.65 VAPOR DIFFUSION, HANGING DROP 8.5 0.1M Tris HCl pH 8.5, 0.2M MgCl2, 30% PEG4000, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 software chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Refinement description Data collection Database references Derived calculations 1 0 2015-07-15 1 1 2017-11-22 1 2 2024-02-28 _software.classification _software.name _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2014-11-06 REL REL A3T 3'-deoxy-3'-(L-threonylamino)adenosine MG MAGNESIUM ION CL CHLORIDE ION HOH water A3T 501 2 A3T A3T 501 A MG 1 3 MG MG 502 A CL 2 4 CL CL 503 A HOH 1 5 HOH HOH 601 A HOH 2 5 HOH HOH 602 A HOH 3 5 HOH HOH 603 A HOH 4 5 HOH HOH 604 A HOH 6 5 HOH HOH 605 A HOH 7 5 HOH HOH 606 A HOH 9 5 HOH HOH 607 A HOH 10 5 HOH HOH 608 A HOH 11 5 HOH HOH 609 A HOH 12 5 HOH HOH 610 A HOH 13 5 HOH HOH 611 A HOH 14 5 HOH HOH 612 A HOH 15 5 HOH HOH 613 A HOH 16 5 HOH HOH 614 A HOH 17 5 HOH HOH 615 A HOH 18 5 HOH HOH 616 A HOH 19 5 HOH HOH 617 A HOH 20 5 HOH HOH 618 A HOH 22 5 HOH HOH 619 A HOH 23 5 HOH HOH 620 A HOH 24 5 HOH HOH 621 A HOH 25 5 HOH HOH 622 A HOH 26 5 HOH HOH 623 A HOH 27 5 HOH HOH 624 A HOH 29 5 HOH HOH 625 A HOH 30 5 HOH HOH 626 A HOH 31 5 HOH HOH 627 A HOH 32 5 HOH HOH 628 A HOH 33 5 HOH HOH 629 A HOH 34 5 HOH HOH 630 A HOH 35 5 HOH HOH 631 A HOH 36 5 HOH HOH 632 A HOH 37 5 HOH HOH 633 A HOH 38 5 HOH HOH 634 A HOH 39 5 HOH HOH 635 A HOH 40 5 HOH HOH 636 A HOH 41 5 HOH HOH 637 A HOH 42 5 HOH HOH 638 A HOH 43 5 HOH HOH 639 A HOH 44 5 HOH HOH 640 A HOH 45 5 HOH HOH 641 A HOH 46 5 HOH HOH 642 A HOH 47 5 HOH HOH 643 A HOH 48 5 HOH HOH 644 A HOH 49 5 HOH HOH 645 A HOH 50 5 HOH HOH 646 A HOH 51 5 HOH HOH 647 A HOH 53 5 HOH HOH 648 A HOH 54 5 HOH HOH 649 A HOH 55 5 HOH HOH 650 A HOH 56 5 HOH HOH 651 A HOH 59 5 HOH HOH 652 A HOH 60 5 HOH HOH 653 A HOH 62 5 HOH HOH 654 A HOH 64 5 HOH HOH 655 A HOH 65 5 HOH HOH 656 A HOH 66 5 HOH HOH 657 A HOH 67 5 HOH HOH 658 A HOH 68 5 HOH HOH 659 A HOH 69 5 HOH HOH 660 A HOH 70 5 HOH HOH 661 A HOH 72 5 HOH HOH 662 A HOH 73 5 HOH HOH 663 A HOH 75 5 HOH HOH 664 A HOH 76 5 HOH HOH 665 A HOH 78 5 HOH HOH 666 A HOH 80 5 HOH HOH 667 A HOH 81 5 HOH HOH 668 A HOH 82 5 HOH HOH 669 A HOH 83 5 HOH HOH 670 A HOH 84 5 HOH HOH 671 A HOH 85 5 HOH HOH 672 A HOH 86 5 HOH HOH 673 A HOH 87 5 HOH HOH 674 A HOH 88 5 HOH HOH 675 A HOH 89 5 HOH HOH 676 A HOH 90 5 HOH HOH 677 A HOH 96 5 HOH HOH 678 A HOH 99 5 HOH HOH 679 A HOH 100 5 HOH HOH 680 A HOH 101 5 HOH HOH 681 A HOH 102 5 HOH HOH 682 A HOH 103 5 HOH HOH 683 A HOH 104 5 HOH HOH 684 A HOH 105 5 HOH HOH 685 A HOH 108 5 HOH HOH 686 A HOH 109 5 HOH HOH 687 A HOH 111 5 HOH HOH 688 A HOH 112 5 HOH HOH 689 A HOH 113 5 HOH HOH 690 A HOH 114 5 HOH HOH 691 A HOH 116 5 HOH HOH 692 A HOH 118 5 HOH HOH 693 A HOH 119 5 HOH HOH 694 A HOH 121 5 HOH HOH 695 A HOH 122 5 HOH HOH 696 A HOH 123 5 HOH HOH 697 A HOH 124 5 HOH HOH 698 A HOH 125 5 HOH HOH 699 A HOH 126 5 HOH HOH 700 A HOH 127 5 HOH HOH 701 A HOH 128 5 HOH HOH 702 A HOH 129 5 HOH HOH 703 A HOH 130 5 HOH HOH 704 A HOH 131 5 HOH HOH 705 A HOH 132 5 HOH HOH 706 A HOH 133 5 HOH HOH 707 A HOH 134 5 HOH HOH 708 A HOH 135 5 HOH HOH 709 A HOH 136 5 HOH HOH 710 A HOH 137 5 HOH HOH 711 A HOH 141 5 HOH HOH 712 A HOH 142 5 HOH HOH 713 A HOH 143 5 HOH HOH 714 A HOH 144 5 HOH HOH 715 A HOH 151 5 HOH HOH 716 A HOH 152 5 HOH HOH 717 A HOH 153 5 HOH HOH 718 A HOH 154 5 HOH HOH 719 A HOH 155 5 HOH HOH 720 A HOH 156 5 HOH HOH 721 A HOH 157 5 HOH HOH 722 A HOH 158 5 HOH HOH 723 A HOH 159 5 HOH HOH 724 A HOH 161 5 HOH HOH 725 A HOH 162 5 HOH HOH 726 A HOH 163 5 HOH HOH 727 A HOH 164 5 HOH HOH 728 A HOH 165 5 HOH HOH 729 A HOH 166 5 HOH HOH 730 A HOH 167 5 HOH HOH 731 A HOH 168 5 HOH HOH 732 A HOH 169 5 HOH HOH 733 A HOH 170 5 HOH HOH 734 A HOH 171 5 HOH HOH 735 A HOH 172 5 HOH HOH 736 A HOH 173 5 HOH HOH 737 A HOH 174 5 HOH HOH 738 A HOH 175 5 HOH HOH 739 A HOH 176 5 HOH HOH 740 A HOH 177 5 HOH HOH 741 A HOH 178 5 HOH HOH 742 A HOH 179 5 HOH HOH 743 A HOH 180 5 HOH HOH 744 A HOH 181 5 HOH HOH 745 A HOH 182 5 HOH HOH 746 A MET 1 n 1 MET 1 A ARG 2 n 2 ARG 2 A LEU 3 n 3 LEU 3 A LEU 4 n 4 LEU 4 A TYR 5 n 5 TYR 5 A LEU 6 n 6 LEU 6 A HIS 7 n 7 HIS 7 A ALA 8 n 8 ALA 8 A ASP 9 n 9 ASP 9 A ARG 10 n 10 ARG 10 A PHE 11 n 11 PHE 11 A GLU 12 n 12 GLU 12 A TYR 13 n 13 TYR 13 A LYS 14 n 14 LYS 14 A THR 15 n 15 THR 15 A VAL 16 n 16 VAL 16 A LYS 17 n 17 LYS 17 A PRO 18 n 18 PRO 18 A ALA 19 n 19 ALA 19 A LEU 20 n 20 LEU 20 A LYS 21 n 21 LYS 21 A ASN 22 n 22 ASN 22 A PRO 23 n 23 PRO 23 A PRO 24 n 24 PRO 24 A ASP 25 n 25 ASP 25 A PRO 26 n 26 PRO 26 A PRO 27 n 27 PRO 27 A GLY 28 n 28 GLY 28 A GLU 29 n 29 GLU 29 A ALA 30 n 30 ALA 30 A SER 31 n 31 SER 31 A PHE 32 n 32 PHE 32 A GLY 33 n 33 GLY 33 A GLU 34 n 34 GLU 34 A ALA 35 n 35 ALA 35 A LEU 36 n 36 LEU 36 A VAL 37 n 37 VAL 37 A VAL 38 n 38 VAL 38 A PHE 39 n 39 PHE 39 A THR 40 n 40 THR 40 A THR 41 n 41 THR 41 A VAL 42 n 42 VAL 42 A GLU 43 n 43 GLU 43 A ASP 44 n 44 ASP 44 A GLY 45 n 45 GLY 45 A ASP 46 n 46 ASP 46 A GLY 47 n 47 GLY 47 A PRO 48 n 48 PRO 48 A GLN 49 n 49 GLN 49 A THR 50 n 50 THR 50 A VAL 51 n 51 VAL 51 A MET 52 n 52 MET 52 A TYR 53 n 53 TYR 53 A ALA 54 n 54 ALA 54 A ALA 55 n 55 ALA 55 A SER 56 n 56 SER 56 A ASP 57 n 57 ASP 57 A ILE 58 n 58 ILE 58 A ALA 59 n 59 ALA 59 A SER 60 n 60 SER 60 A HIS 61 n 61 HIS 61 A SER 62 n 62 SER 62 A SER 63 n 63 SER 63 A ARG 64 n 64 ARG 64 A LEU 65 n 65 LEU 65 A LYS 66 n 66 LYS 66 A VAL 67 n 67 VAL 67 A THR 68 n 68 THR 68 A THR 69 n 69 THR 69 A VAL 70 n 70 VAL 70 A ILE 71 n 71 ILE 71 A LEU 72 n 72 LEU 72 A TYR 73 n 73 TYR 73 A PRO 74 n 74 PRO 74 A TYR 75 n 75 TYR 75 A ALA 76 n 76 ALA 76 A HIS 77 n 77 HIS 77 A LEU 78 n 78 LEU 78 A SER 79 n 79 SER 79 A SER 80 n 80 SER 80 A ARG 81 n 81 ARG 81 A LEU 82 n 82 LEU 82 A ALA 83 n 83 ALA 83 A LYS 84 n 84 LYS 84 A PRO 85 n 85 PRO 85 A MET 86 n 86 MET 86 A ALA 87 n 87 ALA 87 A ALA 88 n 88 ALA 88 A HIS 89 n 89 HIS 89 A LYS 90 n 90 LYS 90 A ARG 91 n 91 ARG 91 A LEU 92 n 92 LEU 92 A ILE 93 n 93 ILE 93 A GLU 94 n 94 GLU 94 A LEU 95 n 95 LEU 95 A GLU 96 n 96 GLU 96 A GLY 97 n 97 GLY 97 A ALA 98 n 98 ALA 98 A LEU 99 n 99 LEU 99 A ARG 100 n 100 ARG 100 A THR 101 n 101 THR 101 A LYS 102 n 102 LYS 102 A PHE 103 n 103 PHE 103 A PRO 104 n 104 PRO 104 A GLY 105 n 105 GLY 105 A HIS 106 n 106 HIS 106 A VAL 107 n 107 VAL 107 A HIS 108 n 108 HIS 108 A ARG 109 n 109 ARG 109 A ALA 110 n 110 ALA 110 A PRO 111 n 111 PRO 111 A PHE 112 n 112 PHE 112 A GLY 113 n 113 GLY 113 A TRP 114 n 114 TRP 114 A TYR 115 n 115 TYR 115 A LYS 116 n 116 LYS 116 A SER 117 n 117 SER 117 A PHE 118 n 118 PHE 118 A SER 119 n 119 SER 119 A ILE 120 n 120 ILE 120 A ALA 121 n 121 ALA 121 A CYS 122 n 122 CYS 122 A LYS 123 n 123 LYS 123 A GLY 124 n 124 GLY 124 A HIS 125 n 125 HIS 125 A PRO 126 n 126 PRO 126 A LEU 127 n 127 LEU 127 A ALA 128 n 128 ALA 128 A ALA 129 n 129 ALA 129 A LEU 130 n 130 LEU 130 A SER 131 n 131 SER 131 A ARG 132 n 132 ARG 132 A SER 133 n 133 SER 133 A PHE 134 n 134 PHE 134 A THR 135 n 135 THR 135 A GLU 136 n 136 GLU 136 A author_and_software_defined_assembly PISA 2 dimeric 1920 -7 11900 A GLU 29 A OE2 GLU 29 1_555 A MG 502 C MG MG 1_555 A HOH 602 E O HOH 1_555 89.8 A GLU 29 A OE2 GLU 29 1_555 A MG 502 C MG MG 1_555 A HOH 658 E O HOH 1_555 175.0 A HOH 602 E O HOH 1_555 A MG 502 C MG MG 1_555 A HOH 658 E O HOH 1_555 86.4 A GLU 29 A OE2 GLU 29 1_555 A MG 502 C MG MG 1_555 A HOH 703 E O HOH 1_555 98.5 A HOH 602 E O HOH 1_555 A MG 502 C MG MG 1_555 A HOH 703 E O HOH 1_555 170.7 A HOH 658 E O HOH 1_555 A MG 502 C MG MG 1_555 A HOH 703 E O HOH 1_555 85.6 A GLU 29 A OE2 GLU 29 1_555 A MG 502 C MG MG 1_555 A HOH 731 E O HOH 1_555 95.0 A HOH 602 E O HOH 1_555 A MG 502 C MG MG 1_555 A HOH 731 E O HOH 1_555 84.5 A HOH 658 E O HOH 1_555 A MG 502 C MG MG 1_555 A HOH 731 E O HOH 1_555 87.9 A HOH 703 E O HOH 1_555 A MG 502 C MG MG 1_555 A HOH 731 E O HOH 1_555 90.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 32 A O PHE 32 A N PHE 11 A N PHE 11 A N VAL 16 A N VAL 16 A O TYR 115 A O TYR 115 A O HIS 108 A O HIS 108 A N LEU 72 A N LEU 72 A O ILE 71 A O ILE 71 A N VAL 38 A N VAL 38 A O VAL 37 A O VAL 37 A N LEU 6 A N LEU 6 A N TYR 5 A N TYR 5 A O LEU 130 A O LEU 130 1 A VAL 16 -114.05 -117.11 1 A ARG 81 -144.52 55.31 20.957 0.01 0.00 0.00 0.01 0.00 -0.02 0.957 0.930 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT 0.25880 0.18807 0.19152 1.55 25.00 985 18248 18120 5.2 99.39 4.680 0.076 RANDOM 1 THROUGHOUT 2 MOLECULAR REPLACEMENT 0.125 0.107 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 1.55 25.00 146 1238 28 0 1064 0.015 0.020 1124 1.744 1.998 1529 6.447 5.000 135 40.000 21.395 43 14.938 15.000 176 15.779 15.000 8 0.111 0.200 168 0.011 0.022 849 4.495 3.000 1124 26.345 5.000 56 14.256 5.000 1182 0.465 0.370 1.590 86 1095 20 95.09 1.55 25 4RRM 18248 18120 2 2 1 99.3 data collection CrystalClear phasing MOLREP phasing PHASER refinement REFMAC 5.6.0117 data reduction HKL-2000 data scaling HKL-2000 E129A mutant of N-terminal editing domain of threonyl-tRNA synthetase from Aeropyrum pernix with L-Thr3AA 1 N N 2 N N 3 N N 4 N N 5 N N A GLY 47 A GLY 47 HELX_P A LYS 66 A LYS 66 1 1 20 A LYS 84 A LYS 84 HELX_P A THR 101 A THR 101 1 2 18 metalc 2.408 A GLU 29 A OE2 GLU 29 1_555 A MG 502 C MG MG 1_555 metalc 2.007 A MG 502 C MG MG 1_555 A HOH 602 E O HOH 1_555 metalc 2.186 A MG 502 C MG MG 1_555 A HOH 658 E O HOH 1_555 metalc 2.044 A MG 502 C MG MG 1_555 A HOH 703 E O HOH 1_555 metalc 2.308 A MG 502 C MG MG 1_555 A HOH 731 E O HOH 1_555 LIGASE DTD-like fold, Proofreading, LIGASE SYT2_AERPE UNP 1 1 Q9YFY3 MRLLYLHADRFEYKTVKPALKNPPDPPGEASFGEALVVFTTVEDGDGPQTVMYAASDIASHSSRLKVTTVILYPYAHLSS RLAKPMAAHKRLIELEGALRTKFPGHVHRAPFGWYKSFSIACKGHPLAELSRSFTE 1 136 4RRM 1 136 Q9YFY3 A 1 1 136 1 GLU engineered mutation ALA 129 4RRM A Q9YFY3 UNP 129 129 3 5 anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel A GLU 29 A GLU 29 A PHE 32 A PHE 32 A ARG 2 A ARG 2 A PRO 18 A PRO 18 A TRP 114 A TRP 114 A CYS 122 A CYS 122 A HIS 106 A HIS 106 A ARG 109 A ARG 109 A THR 69 A THR 69 A PRO 74 A PRO 74 A ALA 35 A ALA 35 A THR 41 A THR 41 A ARG 2 A ARG 2 A PRO 18 A PRO 18 A ALA 129 A ALA 129 A SER 133 A SER 133 BINDING SITE FOR RESIDUE A3T A 501 A A3T 501 Software 19 BINDING SITE FOR RESIDUE MG A 502 A MG 502 Software 6 BINDING SITE FOR RESIDUE CL A 503 A CL 503 Software 6 A ALA 19 A ALA 19 19 1_555 A THR 40 A THR 40 19 1_555 A VAL 42 A VAL 42 19 1_555 A TYR 75 A TYR 75 19 1_555 A ALA 76 A ALA 76 19 1_555 A LEU 82 A LEU 82 19 1_555 A ALA 83 A ALA 83 19 1_555 A ALA 88 A ALA 88 19 1_555 A PHE 112 A PHE 112 19 1_555 A GLY 113 A GLY 113 19 1_555 A TRP 114 A TRP 114 19 1_555 A TYR 115 A TYR 115 19 1_555 A LYS 116 A LYS 116 19 1_555 A HOH 616 E HOH 19 1_555 A HOH 618 E HOH 19 1_555 A HOH 638 E HOH 19 1_555 A HOH 644 E HOH 19 1_555 A HOH 664 E HOH 19 1_555 A HOH 722 E HOH 19 1_555 A GLU 29 A GLU 29 6 1_555 A HOH 602 E HOH 6 1_555 A HOH 627 E HOH 6 7_545 A HOH 658 E HOH 6 1_555 A HOH 703 E HOH 6 1_555 A HOH 731 E HOH 6 1_555 A ARG 100 A ARG 100 6 5_555 A HIS 106 A HIS 106 6 5_555 A VAL 107 A VAL 107 6 5_555 A SER 133 A SER 133 6 1_555 A PHE 134 A PHE 134 6 1_555 A HOH 604 E HOH 6 5_555 92 P 41 21 2