0.033190
0.000000
0.011551
0.000000
0.012904
0.000000
0.000000
0.000000
0.023105
0.00000
0.00000
0.00000
Wu, R.
Bearden, J.
Kim, Y.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
109.19
90.00
30.130
77.496
45.827
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
Ni 2
58.693
NICKEL (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
TO BE PUBLISHED
0353
The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase protein from Planctomyces limnophilus dsm 3776
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
CCD
2011-01-01
ADSC QUANTUM 315r
SI 111, CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.97924
1.0
19-ID
APS
0.97924
SYNCHROTRON
APS BEAMLINE 19-ID
12727.806
Glyoxalase/bleomycin resistance protein/dioxygenase
4.4.1.5
2
man
polymer
58.693
NICKEL (II) ION
2
syn
non-polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
133
nat
water
no
yes
SNA(MSE)ETSVIEASSLKLDDLHHIAISVTDVAQSVEWYTSHFQCRIAYQDSTWALLKFGNLSLALVIPEQHPPHIAFT
SDRAGEYGSLKTHRDGTRSCYIQDPSGNSVEL(MSE)DPTSL
SNAMETSVIEASSLKLDDLHHIAISVTDVAQSVEWYTSHFQCRIAYQDSTWALLKFGNLSLALVIPEQHPPHIAFTSDRA
GEYGSLKTHRDGTRSCYIQDPSGNSVELMDPTSL
A,B
MCSG-APC100578
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
Plim_1428
521674
Planctomyces limnophilus DSM 3776
469008
Escherichia coli
BL21(DE3)MAGIC
PMCSG48
1
1.98
38.03
8.5
0.2 M Magnesium Chloride, 0.1 M TRIS:HCl, pH 8.5, 30% (w/v) PEG 4000, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
Midwest Center for Structural Genomics
MCSG
PSI:Biology
repository
Initial release
1
0
2014-12-03
Y
RCSB
Y
RCSB
2014-11-13
REL
REL
NI
NICKEL (II) ION
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
GOL
GLYCEROL
HOH
water
NI
130
2
NI
NI
201
A
TRS
131
3
TRS
TRS
202
A
TRS
132
3
TRS
TRS
203
A
NI
130
2
NI
NI
201
B
TRS
131
3
TRS
TRS
202
B
GOL
133
4
GOL
GOL
203
B
HOH
4
5
HOH
HOH
301
A
HOH
6
5
HOH
HOH
302
A
HOH
11
5
HOH
HOH
303
A
HOH
13
5
HOH
HOH
304
A
HOH
14
5
HOH
HOH
305
A
HOH
17
5
HOH
HOH
306
A
HOH
19
5
HOH
HOH
307
A
HOH
23
5
HOH
HOH
308
A
HOH
27
5
HOH
HOH
309
A
HOH
29
5
HOH
HOH
310
A
HOH
30
5
HOH
HOH
311
A
HOH
31
5
HOH
HOH
312
A
HOH
33
5
HOH
HOH
313
A
HOH
34
5
HOH
HOH
314
A
HOH
35
5
HOH
HOH
315
A
HOH
39
5
HOH
HOH
316
A
HOH
44
5
HOH
HOH
317
A
HOH
46
5
HOH
HOH
318
A
HOH
49
5
HOH
HOH
319
A
HOH
53
5
HOH
HOH
320
A
HOH
56
5
HOH
HOH
321
A
HOH
59
5
HOH
HOH
322
A
HOH
62
5
HOH
HOH
323
A
HOH
64
5
HOH
HOH
324
A
HOH
65
5
HOH
HOH
325
A
HOH
73
5
HOH
HOH
326
A
HOH
85
5
HOH
HOH
327
A
HOH
86
5
HOH
HOH
328
A
HOH
96
5
HOH
HOH
329
A
HOH
100
5
HOH
HOH
330
A
HOH
103
5
HOH
HOH
331
A
HOH
105
5
HOH
HOH
332
A
HOH
107
5
HOH
HOH
333
A
HOH
112
5
HOH
HOH
334
A
HOH
113
5
HOH
HOH
335
A
HOH
117
5
HOH
HOH
336
A
HOH
118
5
HOH
HOH
337
A
HOH
130
5
HOH
HOH
338
A
HOH
144
5
HOH
HOH
339
A
HOH
155
5
HOH
HOH
340
A
HOH
159
5
HOH
HOH
341
A
HOH
170
5
HOH
HOH
342
A
HOH
171
5
HOH
HOH
343
A
HOH
173
5
HOH
HOH
344
A
HOH
174
5
HOH
HOH
345
A
HOH
180
5
HOH
HOH
346
A
HOH
184
5
HOH
HOH
347
A
HOH
200
5
HOH
HOH
348
A
HOH
215
5
HOH
HOH
349
A
HOH
226
5
HOH
HOH
350
A
HOH
228
5
HOH
HOH
351
A
HOH
234
5
HOH
HOH
352
A
HOH
235
5
HOH
HOH
353
A
HOH
236
5
HOH
HOH
354
A
HOH
237
5
HOH
HOH
355
A
HOH
240
5
HOH
HOH
356
A
HOH
241
5
HOH
HOH
357
A
HOH
249
5
HOH
HOH
358
A
HOH
252
5
HOH
HOH
359
A
HOH
254
5
HOH
HOH
360
A
HOH
255
5
HOH
HOH
361
A
HOH
256
5
HOH
HOH
362
A
HOH
257
5
HOH
HOH
363
A
HOH
260
5
HOH
HOH
364
A
HOH
261
5
HOH
HOH
365
A
HOH
263
5
HOH
HOH
366
A
HOH
264
5
HOH
HOH
367
A
HOH
265
5
HOH
HOH
368
A
HOH
266
5
HOH
HOH
369
A
HOH
267
5
HOH
HOH
370
A
HOH
269
5
HOH
HOH
371
A
HOH
272
5
HOH
HOH
372
A
HOH
273
5
HOH
HOH
373
A
HOH
277
5
HOH
HOH
374
A
HOH
279
5
HOH
HOH
375
A
HOH
280
5
HOH
HOH
376
A
HOH
281
5
HOH
HOH
377
A
HOH
282
5
HOH
HOH
378
A
HOH
1
5
HOH
HOH
301
B
HOH
2
5
HOH
HOH
302
B
HOH
5
5
HOH
HOH
303
B
HOH
15
5
HOH
HOH
304
B
HOH
16
5
HOH
HOH
305
B
HOH
20
5
HOH
HOH
306
B
HOH
24
5
HOH
HOH
307
B
HOH
25
5
HOH
HOH
308
B
HOH
26
5
HOH
HOH
309
B
HOH
36
5
HOH
HOH
310
B
HOH
37
5
HOH
HOH
311
B
HOH
38
5
HOH
HOH
312
B
HOH
40
5
HOH
HOH
313
B
HOH
43
5
HOH
HOH
314
B
HOH
45
5
HOH
HOH
315
B
HOH
58
5
HOH
HOH
316
B
HOH
63
5
HOH
HOH
317
B
HOH
68
5
HOH
HOH
318
B
HOH
69
5
HOH
HOH
319
B
HOH
71
5
HOH
HOH
320
B
HOH
76
5
HOH
HOH
321
B
HOH
78
5
HOH
HOH
322
B
HOH
87
5
HOH
HOH
323
B
HOH
98
5
HOH
HOH
324
B
HOH
108
5
HOH
HOH
325
B
HOH
109
5
HOH
HOH
326
B
HOH
110
5
HOH
HOH
327
B
HOH
120
5
HOH
HOH
328
B
HOH
161
5
HOH
HOH
329
B
HOH
185
5
HOH
HOH
330
B
HOH
191
5
HOH
HOH
331
B
HOH
193
5
HOH
HOH
332
B
HOH
194
5
HOH
HOH
333
B
HOH
195
5
HOH
HOH
334
B
HOH
196
5
HOH
HOH
335
B
HOH
197
5
HOH
HOH
336
B
HOH
198
5
HOH
HOH
337
B
HOH
201
5
HOH
HOH
338
B
HOH
202
5
HOH
HOH
339
B
HOH
204
5
HOH
HOH
340
B
HOH
205
5
HOH
HOH
341
B
HOH
213
5
HOH
HOH
342
B
HOH
219
5
HOH
HOH
343
B
HOH
221
5
HOH
HOH
344
B
HOH
227
5
HOH
HOH
345
B
HOH
231
5
HOH
HOH
346
B
HOH
246
5
HOH
HOH
347
B
HOH
247
5
HOH
HOH
348
B
HOH
258
5
HOH
HOH
349
B
HOH
259
5
HOH
HOH
350
B
HOH
271
5
HOH
HOH
351
B
HOH
274
5
HOH
HOH
352
B
HOH
275
5
HOH
HOH
353
B
HOH
276
5
HOH
HOH
354
B
HOH
278
5
HOH
HOH
355
B
n
1
-2
A
n
2
-1
A
n
3
0
A
n
4
1
A
n
5
2
A
n
6
3
A
n
7
4
A
n
8
5
A
n
9
6
A
n
10
7
A
n
11
8
A
n
12
9
A
n
13
10
A
ALA
12
n
14
LEU
11
A
LYS
13
n
15
LYS
12
A
LEU
14
n
16
LEU
13
A
ASP
15
n
17
ASP
14
A
ASP
16
n
18
ASP
15
A
LEU
17
n
19
LEU
16
A
HIS
18
n
20
HIS
17
A
HIS
19
n
21
HIS
18
A
ILE
20
n
22
ILE
19
A
ALA
21
n
23
ALA
20
A
ILE
22
n
24
ILE
21
A
SER
23
n
25
SER
22
A
VAL
24
n
26
VAL
23
A
THR
25
n
27
THR
24
A
ASP
26
n
28
ASP
25
A
VAL
27
n
29
VAL
26
A
ALA
28
n
30
ALA
27
A
GLN
29
n
31
GLN
28
A
SER
30
n
32
SER
29
A
VAL
31
n
33
VAL
30
A
GLU
32
n
34
GLU
31
A
TRP
33
n
35
TRP
32
A
TYR
34
n
36
TYR
33
A
THR
35
n
37
THR
34
A
SER
36
n
38
SER
35
A
HIS
37
n
39
HIS
36
A
PHE
38
n
40
PHE
37
A
GLN
39
n
41
GLN
38
A
CYS
40
n
42
CYS
39
A
ARG
41
n
43
ARG
40
A
ILE
42
n
44
ILE
41
A
ALA
43
n
45
ALA
42
A
TYR
44
n
46
TYR
43
A
GLN
45
n
47
GLN
44
A
ASP
46
n
48
ASP
45
A
SER
47
n
49
SER
46
A
THR
48
n
50
THR
47
A
TRP
49
n
51
TRP
48
A
ALA
50
n
52
ALA
49
A
LEU
51
n
53
LEU
50
A
LEU
52
n
54
LEU
51
A
LYS
53
n
55
LYS
52
A
PHE
54
n
56
PHE
53
A
GLY
55
n
57
GLY
54
A
ASN
56
n
58
ASN
55
A
LEU
57
n
59
LEU
56
A
SER
58
n
60
SER
57
A
LEU
59
n
61
LEU
58
A
ALA
60
n
62
ALA
59
A
LEU
61
n
63
LEU
60
A
VAL
62
n
64
VAL
61
A
ILE
63
n
65
ILE
62
A
PRO
64
n
66
PRO
63
A
GLU
65
n
67
GLU
64
A
GLN
66
n
68
GLN
65
A
HIS
67
n
69
HIS
66
A
PRO
68
n
70
PRO
67
A
PRO
69
n
71
PRO
68
A
HIS
70
n
72
HIS
69
A
ILE
71
n
73
ILE
70
A
ALA
72
n
74
ALA
71
A
PHE
73
n
75
PHE
72
A
THR
74
n
76
THR
73
A
SER
75
n
77
SER
74
A
ASP
76
n
78
ASP
75
A
ARG
77
n
79
ARG
76
A
ALA
78
n
80
ALA
77
A
GLY
79
n
81
GLY
78
A
GLU
80
n
82
GLU
79
A
TYR
81
n
83
TYR
80
A
GLY
82
n
84
GLY
81
A
SER
83
n
85
SER
82
A
LEU
84
n
86
LEU
83
A
LYS
85
n
87
LYS
84
A
THR
86
n
88
THR
85
A
HIS
87
n
89
HIS
86
A
ARG
88
n
90
ARG
87
A
ASP
89
n
91
ASP
88
A
GLY
90
n
92
GLY
89
A
THR
91
n
93
THR
90
A
ARG
92
n
94
ARG
91
A
SER
93
n
95
SER
92
A
CYS
94
n
96
CYS
93
A
TYR
95
n
97
TYR
94
A
ILE
96
n
98
ILE
95
A
GLN
97
n
99
GLN
96
A
ASP
98
n
100
ASP
97
A
PRO
99
n
101
PRO
98
A
SER
100
n
102
SER
99
A
GLY
101
n
103
GLY
100
A
ASN
102
n
104
ASN
101
A
SER
103
n
105
SER
102
A
VAL
104
n
106
VAL
103
A
GLU
105
n
107
GLU
104
A
LEU
106
n
108
LEU
105
A
MSE
107
n
109
MSE
106
A
ASP
108
n
110
ASP
107
A
PRO
109
n
111
PRO
108
A
THR
110
n
112
THR
109
A
SER
111
n
113
SER
110
A
LEU
112
n
114
LEU
111
A
n
1
-2
B
n
2
-1
B
n
3
0
B
n
4
1
B
n
5
2
B
n
6
3
B
n
7
4
B
n
8
5
B
n
9
6
B
n
10
7
B
n
11
8
B
n
12
9
B
n
13
10
B
n
14
11
B
LYS
13
n
15
LYS
12
B
LEU
14
n
16
LEU
13
B
ASP
15
n
17
ASP
14
B
ASP
16
n
18
ASP
15
B
LEU
17
n
19
LEU
16
B
HIS
18
n
20
HIS
17
B
HIS
19
n
21
HIS
18
B
ILE
20
n
22
ILE
19
B
ALA
21
n
23
ALA
20
B
ILE
22
n
24
ILE
21
B
SER
23
n
25
SER
22
B
VAL
24
n
26
VAL
23
B
THR
25
n
27
THR
24
B
ASP
26
n
28
ASP
25
B
VAL
27
n
29
VAL
26
B
ALA
28
n
30
ALA
27
B
GLN
29
n
31
GLN
28
B
SER
30
n
32
SER
29
B
VAL
31
n
33
VAL
30
B
GLU
32
n
34
GLU
31
B
TRP
33
n
35
TRP
32
B
TYR
34
n
36
TYR
33
B
THR
35
n
37
THR
34
B
SER
36
n
38
SER
35
B
HIS
37
n
39
HIS
36
B
PHE
38
n
40
PHE
37
B
GLN
39
n
41
GLN
38
B
CYS
40
n
42
CYS
39
B
ARG
41
n
43
ARG
40
B
ILE
42
n
44
ILE
41
B
ALA
43
n
45
ALA
42
B
TYR
44
n
46
TYR
43
B
GLN
45
n
47
GLN
44
B
ASP
46
n
48
ASP
45
B
SER
47
n
49
SER
46
B
THR
48
n
50
THR
47
B
TRP
49
n
51
TRP
48
B
ALA
50
n
52
ALA
49
B
LEU
51
n
53
LEU
50
B
LEU
52
n
54
LEU
51
B
LYS
53
n
55
LYS
52
B
PHE
54
n
56
PHE
53
B
GLY
55
n
57
GLY
54
B
ASN
56
n
58
ASN
55
B
LEU
57
n
59
LEU
56
B
SER
58
n
60
SER
57
B
LEU
59
n
61
LEU
58
B
ALA
60
n
62
ALA
59
B
LEU
61
n
63
LEU
60
B
VAL
62
n
64
VAL
61
B
ILE
63
n
65
ILE
62
B
PRO
64
n
66
PRO
63
B
GLU
65
n
67
GLU
64
B
GLN
66
n
68
GLN
65
B
HIS
67
n
69
HIS
66
B
PRO
68
n
70
PRO
67
B
PRO
69
n
71
PRO
68
B
HIS
70
n
72
HIS
69
B
ILE
71
n
73
ILE
70
B
ALA
72
n
74
ALA
71
B
PHE
73
n
75
PHE
72
B
THR
74
n
76
THR
73
B
SER
75
n
77
SER
74
B
ASP
76
n
78
ASP
75
B
ARG
77
n
79
ARG
76
B
ALA
78
n
80
ALA
77
B
GLY
79
n
81
GLY
78
B
GLU
80
n
82
GLU
79
B
TYR
81
n
83
TYR
80
B
GLY
82
n
84
GLY
81
B
SER
83
n
85
SER
82
B
LEU
84
n
86
LEU
83
B
LYS
85
n
87
LYS
84
B
THR
86
n
88
THR
85
B
HIS
87
n
89
HIS
86
B
ARG
88
n
90
ARG
87
B
ASP
89
n
91
ASP
88
B
GLY
90
n
92
GLY
89
B
THR
91
n
93
THR
90
B
ARG
92
n
94
ARG
91
B
SER
93
n
95
SER
92
B
CYS
94
n
96
CYS
93
B
TYR
95
n
97
TYR
94
B
ILE
96
n
98
ILE
95
B
GLN
97
n
99
GLN
96
B
ASP
98
n
100
ASP
97
B
PRO
99
n
101
PRO
98
B
SER
100
n
102
SER
99
B
GLY
101
n
103
GLY
100
B
ASN
102
n
104
ASN
101
B
SER
103
n
105
SER
102
B
VAL
104
n
106
VAL
103
B
GLU
105
n
107
GLU
104
B
LEU
106
n
108
LEU
105
B
MSE
107
n
109
MSE
106
B
ASP
108
n
110
ASP
107
B
PRO
109
n
111
PRO
108
B
THR
110
n
112
THR
109
B
SER
111
n
113
SER
110
B
LEU
112
n
114
LEU
111
B
author_and_software_defined_assembly
PISA
2
dimeric
4800
-35
9750
B
TRS
202
G
O2
TRS
1_555
B
NI
201
F
NI
NI
1_555
B
TRS
202
G
O1
TRS
1_555
92.3
B
TRS
202
G
O2
TRS
1_555
B
NI
201
F
NI
NI
1_555
B
HIS
18
B
NE2
HIS
21
1_555
88.7
B
TRS
202
G
O1
TRS
1_555
B
NI
201
F
NI
NI
1_555
B
HIS
18
B
NE2
HIS
21
1_555
157.2
B
TRS
202
G
O2
TRS
1_555
B
NI
201
F
NI
NI
1_555
B
HIS
69
B
NE2
HIS
72
1_555
174.2
B
TRS
202
G
O1
TRS
1_555
B
NI
201
F
NI
NI
1_555
B
HIS
69
B
NE2
HIS
72
1_555
83.4
B
HIS
18
B
NE2
HIS
21
1_555
B
NI
201
F
NI
NI
1_555
B
HIS
69
B
NE2
HIS
72
1_555
93.7
B
TRS
202
G
O2
TRS
1_555
B
NI
201
F
NI
NI
1_555
B
GLU
104
B
OE1
GLU
107
1_555
101.4
B
TRS
202
G
O1
TRS
1_555
B
NI
201
F
NI
NI
1_555
B
GLU
104
B
OE1
GLU
107
1_555
106.8
B
HIS
18
B
NE2
HIS
21
1_555
B
NI
201
F
NI
NI
1_555
B
GLU
104
B
OE1
GLU
107
1_555
95.3
B
HIS
69
B
NE2
HIS
72
1_555
B
NI
201
F
NI
NI
1_555
B
GLU
104
B
OE1
GLU
107
1_555
83.7
A
TRS
202
D
O2
TRS
1_555
A
NI
201
C
NI
NI
1_555
A
TRS
202
D
O3
TRS
1_555
86.7
A
TRS
202
D
O2
TRS
1_555
A
NI
201
C
NI
NI
1_555
A
HIS
69
A
NE2
HIS
72
1_555
90.3
A
TRS
202
D
O3
TRS
1_555
A
NI
201
C
NI
NI
1_555
A
HIS
69
A
NE2
HIS
72
1_555
170.0
A
TRS
202
D
O2
TRS
1_555
A
NI
201
C
NI
NI
1_555
A
GLU
104
A
OE2
GLU
107
1_555
126.8
A
TRS
202
D
O3
TRS
1_555
A
NI
201
C
NI
NI
1_555
A
GLU
104
A
OE2
GLU
107
1_555
85.1
A
HIS
69
A
NE2
HIS
72
1_555
A
NI
201
C
NI
NI
1_555
A
GLU
104
A
OE2
GLU
107
1_555
89.1
A
TRS
202
D
O2
TRS
1_555
A
NI
201
C
NI
NI
1_555
A
HIS
18
A
NE2
HIS
21
1_555
140.5
A
TRS
202
D
O3
TRS
1_555
A
NI
201
C
NI
NI
1_555
A
HIS
18
A
NE2
HIS
21
1_555
92.7
A
HIS
69
A
NE2
HIS
72
1_555
A
NI
201
C
NI
NI
1_555
A
HIS
18
A
NE2
HIS
21
1_555
95.7
A
GLU
104
A
OE2
GLU
107
1_555
A
NI
201
C
NI
NI
1_555
A
HIS
18
A
NE2
HIS
21
1_555
92.4
A
TRS
202
D
O2
TRS
1_555
A
NI
201
C
NI
NI
1_555
A
HOH
360
I
O
HOH
1_555
58.4
A
TRS
202
D
O3
TRS
1_555
A
NI
201
C
NI
NI
1_555
A
HOH
360
I
O
HOH
1_555
99.8
A
HIS
69
A
NE2
HIS
72
1_555
A
NI
201
C
NI
NI
1_555
A
HOH
360
I
O
HOH
1_555
86.7
A
GLU
104
A
OE2
GLU
107
1_555
A
NI
201
C
NI
NI
1_555
A
HOH
360
I
O
HOH
1_555
173.4
A
HIS
18
A
NE2
HIS
21
1_555
A
NI
201
C
NI
NI
1_555
A
HOH
360
I
O
HOH
1_555
82.9
A
MSE
106
SELENOMETHIONINE
A
MSE
109
MET
B
MSE
106
SELENOMETHIONINE
B
MSE
109
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
40
A
N
ARG
43
A
O
LYS
52
A
O
LYS
55
A
N
LEU
51
A
N
LEU
54
A
O
LEU
58
A
O
LEU
61
A
O
ALA
59
A
O
ALA
62
A
N
ILE
19
A
N
ILE
22
A
N
HIS
18
A
N
HIS
21
A
O
ALA
71
A
O
ALA
74
A
N
PHE
72
A
N
PHE
75
A
O
MSE
106
A
O
MSE
109
A
O
VAL
103
A
O
VAL
106
A
N
ILE
95
A
N
ILE
98
A
O
SER
92
A
O
SER
95
A
N
LYS
84
A
N
LYS
87
B
N
ARG
40
B
N
ARG
43
B
O
LYS
52
B
O
LYS
55
B
N
ALA
49
B
N
ALA
52
B
O
LEU
60
B
O
LEU
63
B
O
ALA
59
B
O
ALA
62
B
N
ILE
19
B
N
ILE
22
B
N
ALA
20
B
N
ALA
23
B
O
HIS
69
B
O
HIS
72
B
N
PHE
72
B
N
PHE
75
B
O
MSE
106
B
O
MSE
109
B
O
VAL
103
B
O
VAL
106
B
N
ILE
95
B
N
ILE
98
B
O
SER
92
B
O
SER
95
B
N
LYS
84
B
N
LYS
87
1
A
CG
LEU
11
A
CG
LEU
14
1
Y
1
A
CD1
LEU
11
A
CD1
LEU
14
1
Y
1
A
CD2
LEU
11
A
CD2
LEU
14
1
Y
1
A
SER
-2
A
SER
1
1
Y
1
A
ASN
-1
A
ASN
2
1
Y
1
A
ALA
0
A
ALA
3
1
Y
1
A
MSE
1
A
MSE
4
1
Y
1
A
GLU
2
A
GLU
5
1
Y
1
A
THR
3
A
THR
6
1
Y
1
A
SER
4
A
SER
7
1
Y
1
A
VAL
5
A
VAL
8
1
Y
1
A
ILE
6
A
ILE
9
1
Y
1
A
GLU
7
A
GLU
10
1
Y
1
A
ALA
8
A
ALA
11
1
Y
1
A
SER
9
A
SER
12
1
Y
1
A
SER
10
A
SER
13
1
Y
1
B
SER
-2
B
SER
1
1
Y
1
B
ASN
-1
B
ASN
2
1
Y
1
B
ALA
0
B
ALA
3
1
Y
1
B
MSE
1
B
MSE
4
1
Y
1
B
GLU
2
B
GLU
5
1
Y
1
B
THR
3
B
THR
6
1
Y
1
B
SER
4
B
SER
7
1
Y
1
B
VAL
5
B
VAL
8
1
Y
1
B
ILE
6
B
ILE
9
1
Y
1
B
GLU
7
B
GLU
10
1
Y
1
B
ALA
8
B
ALA
11
1
Y
1
B
SER
9
B
SER
12
1
Y
1
B
SER
10
B
SER
13
1
Y
1
B
LEU
11
B
LEU
14
1
Y
1
A
PHE
53
-105.64
-166.18
1
B
ASP
45
-132.93
-148.89
1
B
ASP
45
-132.93
-148.90
1
B
HIS
66
A
-162.38
114.92
1
B
HIS
66
B
-162.41
102.51
1
B
HIS
69
178.49
168.85
0.180
0.151
0.153
1.50
37.79
1463
28302
5.170
89.5
1
1.350
SAD
19.480
0.90
1.11
TWIN_LSQ_F
FLAT BULK SOLVENT MODEL
1.50
37.79
133
1748
32
0
1583
0.009
1729
1.163
2375
13.170
623
0.046
262
0.005
309
0.2432
0.2201
1.5574
74
1693
54.00
0.2232
0.1955
1.6197
109
2132
69.00
0.2171
0.1813
1.6934
139
2642
83.00
0.2243
0.1796
1.7827
146
2868
92.00
0.1978
0.1800
1.8944
153
2941
93.00
0.1860
0.1736
2.0406
152
2931
93.00
0.2216
0.1642
2.2459
154
2924
93.00
0.1898
0.1629
2.5707
178
2957
93.00
0.1777
0.1401
3.2381
153
2982
94.00
0.1488
0.1106
28.4608
167
2802
87.00
1.500
50.000
4RT5
30528
0.03600
1
17.1000
4.800
96.6
1.50
1.53
2.300
0.62400
1
3.50
90.2
data collection
HKL-3000
phasing
MLPHARE
refinement
PHENIX
(phenix.refine: dev_1745)
data reduction
HKL-3000
data scaling
HKL-3000
Glyoxalase/bleomycin resistance protein/dioxygenase
The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase protein from planctomyces limnophilus dsm 3776
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
ASP
25
A
ASP
28
HELX_P
A
PHE
37
A
PHE
40
1
1
13
A
ARG
76
A
ARG
79
HELX_P
A
GLY
81
A
GLY
84
1
2
6
A
PRO
108
A
PRO
111
HELX_P
A
LEU
111
A
LEU
114
5
3
4
B
ASP
25
B
ASP
28
HELX_P
B
PHE
37
B
PHE
40
1
4
13
B
ARG
76
B
ARG
79
HELX_P
B
GLY
81
B
GLY
84
5
5
6
B
PRO
108
B
PRO
111
HELX_P
B
LEU
111
B
LEU
114
5
6
4
metalc
2.011
B
NI
201
F
NI
NI
1_555
B
TRS
202
G
O2
TRS
1_555
metalc
2.087
A
NI
201
C
NI
NI
1_555
A
TRS
202
D
O2
TRS
1_555
metalc
2.482
B
NI
201
F
NI
NI
1_555
B
TRS
202
G
O1
TRS
1_555
metalc
2.485
A
NI
201
C
NI
NI
1_555
A
TRS
202
D
O3
TRS
1_555
covale
1.326
A
LEU
105
A
C
LEU
108
1_555
A
MSE
106
A
N
MSE
109
1_555
covale
1.329
A
MSE
106
A
C
MSE
109
1_555
A
ASP
107
A
N
ASP
110
1_555
metalc
2.028
A
HIS
69
A
NE2
HIS
72
1_555
A
NI
201
C
NI
NI
1_555
metalc
2.212
A
GLU
104
A
OE2
GLU
107
1_555
A
NI
201
C
NI
NI
1_555
metalc
2.223
A
HIS
18
A
NE2
HIS
21
1_555
A
NI
201
C
NI
NI
1_555
metalc
2.570
A
NI
201
C
NI
NI
1_555
A
HOH
360
I
O
HOH
1_555
covale
1.326
B
LEU
105
B
C
LEU
108
1_555
B
MSE
106
B
N
MSE
109
1_555
covale
1.330
B
MSE
106
B
C
MSE
109
1_555
B
ASP
107
B
N
ASP
110
1_555
metalc
2.068
B
HIS
18
B
NE2
HIS
21
1_555
B
NI
201
F
NI
NI
1_555
metalc
2.226
B
HIS
69
B
NE2
HIS
72
1_555
B
NI
201
F
NI
NI
1_555
metalc
2.343
B
GLU
104
B
OE1
GLU
107
1_555
B
NI
201
F
NI
NI
1_555
OXIDOREDUCTASE
OXIDOREDUCTASE, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, A/B FOLD, CYTOSOLIC
D5SVJ2_PLAL2
UNP
1
1
D5SVJ2
METSVIEASSLKLDDLHHIAISVTDVAQSVEWYTSHFQCRIAYQDSTWALLKFGNLSLALVIPEQHPPHIAFTSDRAGEY
GSLKTHRDGTRSCYIQDPSGNSVELMDPTSL
1
111
4RT5
1
111
D5SVJ2
A
1
4
114
1
111
4RT5
1
111
D5SVJ2
B
1
4
114
1
EXPRESSION TAG
SER
-2
4RT5
A
D5SVJ2
UNP
1
1
EXPRESSION TAG
ASN
-1
4RT5
A
D5SVJ2
UNP
2
1
EXPRESSION TAG
ALA
0
4RT5
A
D5SVJ2
UNP
3
2
EXPRESSION TAG
SER
-2
4RT5
B
D5SVJ2
UNP
1
2
EXPRESSION TAG
ASN
-1
4RT5
B
D5SVJ2
UNP
2
2
EXPRESSION TAG
ALA
0
4RT5
B
D5SVJ2
UNP
3
8
8
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ARG
40
A
ARG
43
A
GLN
44
A
GLN
47
A
TRP
48
A
TRP
51
A
LYS
52
A
LYS
55
A
SER
57
A
SER
60
A
VAL
61
A
VAL
64
A
LEU
16
A
LEU
19
A
SER
22
A
SER
25
A
HIS
69
A
HIS
72
A
THR
73
A
THR
76
A
SER
102
A
SER
105
A
MSE
106
A
MSE
109
A
ARG
91
A
ARG
94
A
GLN
96
A
GLN
99
A
LYS
84
A
LYS
87
A
THR
85
A
THR
88
B
ARG
40
B
ARG
43
B
GLN
44
B
GLN
47
B
TRP
48
B
TRP
51
B
LYS
52
B
LYS
55
B
SER
57
B
SER
60
B
VAL
61
B
VAL
64
B
LEU
16
B
LEU
19
B
SER
22
B
SER
25
B
HIS
69
B
HIS
72
B
THR
73
B
THR
76
B
SER
102
B
SER
105
B
MSE
106
B
MSE
109
B
ARG
91
B
ARG
94
B
GLN
96
B
GLN
99
B
LYS
84
B
LYS
87
B
THR
85
B
THR
88
BINDING SITE FOR RESIDUE NI A 201
Software
5
BINDING SITE FOR RESIDUE TRS A 202
Software
11
BINDING SITE FOR RESIDUE TRS A 203
Software
4
BINDING SITE FOR RESIDUE NI B 201
Software
4
BINDING SITE FOR RESIDUE TRS B 202
Software
8
BINDING SITE FOR RESIDUE GOL B 203
Software
5
A
HIS
18
A
HIS
21
5
1_555
A
HIS
69
A
HIS
72
5
1_555
A
GLU
104
A
GLU
107
5
1_555
A
TRS
202
D
TRS
5
1_555
A
HOH
360
I
HOH
5
1_555
A
HIS
18
A
HIS
21
11
1_555
A
HIS
66
A
HIS
69
11
1_555
A
HIS
69
A
HIS
72
11
1_555
A
HIS
86
A
HIS
89
11
1_555
A
TYR
94
A
TYR
97
11
1_555
A
GLU
104
A
GLU
107
11
1_555
A
NI
201
C
NI
11
1_555
A
HOH
319
I
HOH
11
1_555
A
HOH
349
I
HOH
11
1_555
A
HOH
350
I
HOH
11
1_555
A
HOH
360
I
HOH
11
1_555
A
ASP
15
A
ASP
18
4
1_555
A
SER
99
A
SER
102
4
1_655
A
HOH
311
I
HOH
4
1_555
B
GLY
54
B
GLY
57
4
1_555
B
HIS
18
B
HIS
21
4
1_555
B
HIS
69
B
HIS
72
4
1_555
B
GLU
104
B
GLU
107
4
1_555
B
TRS
202
G
TRS
4
1_555
B
HIS
18
B
HIS
21
8
1_555
B
HIS
66
B
HIS
69
8
1_555
B
HIS
69
B
HIS
72
8
1_555
B
HIS
86
B
HIS
89
8
1_555
B
TYR
94
B
TYR
97
8
1_555
B
GLU
104
B
GLU
107
8
1_555
B
NI
201
F
NI
8
1_555
B
HOH
351
J
HOH
8
1_555
B
ASP
25
B
ASP
28
5
1_555
B
VAL
26
B
VAL
29
5
1_555
B
ALA
27
B
ALA
30
5
1_555
B
SER
46
B
SER
49
5
1_555
B
ILE
62
B
ILE
65
5
1_555
4
P 1 21 1