0.010477
0.000000
0.000000
0.000000
0.009736
0.000000
0.000000
0.000000
0.018715
0.00000
0.00000
0.00000
Patra, A.
Banerjee, S.
Stone, M.P.
Egli, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
95.451
102.716
53.432
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H16 N5 O12 P3
491.182
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C11 H18 N5 O8 P
379.263
N-{2-amino-5-[formyl(methyl)amino]-6-hydroxypyrimidin-4-yl}-2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosylamine
DNA linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
O
N
90
N
P
N
91
N
O
N
92
N
O
N
93
N
O
N
94
N
C
N
95
R
C
N
96
N
O
N
97
S
C
N
98
N
O
N
99
N
C
N
100
R
C
Y
101
N
N
Y
102
N
C
Y
103
N
N
Y
104
N
C
Y
105
N
C
N
106
N
N
Y
107
N
N
Y
108
N
C
Y
109
N
N
Y
110
N
C
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
O
N
126
N
P
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
O
N
133
S
C
N
134
N
O
N
135
N
C
N
136
R
C
N
137
N
N
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
C
N
142
N
N
N
143
N
C
N
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
P
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
O
N
167
S
C
N
168
N
O
N
169
N
C
N
170
R
C
Y
171
N
N
Y
172
N
C
Y
173
N
N
Y
174
N
C
N
175
N
C
N
176
N
O
N
177
N
N
N
178
N
C
N
179
N
N
N
180
N
N
Y
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
P
N
198
N
O
N
199
N
O
N
200
N
O
N
201
N
C
N
202
R
C
N
203
N
O
N
204
S
C
N
205
N
O
N
206
N
C
N
207
R
C
N
208
N
N
N
209
N
C
N
210
N
O
N
211
N
N
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
P
N
233
N
O
N
234
N
O
N
235
N
O
N
236
S
P
N
237
N
O
N
238
N
O
N
239
N
O
N
240
S
P
N
241
N
O
N
242
N
O
N
243
N
O
N
244
N
O
N
245
N
C
N
246
R
C
N
247
N
O
N
248
S
C
N
249
N
O
N
250
N
C
N
251
R
C
Y
252
N
N
Y
253
N
C
Y
254
N
N
Y
255
N
C
Y
256
N
C
N
257
N
N
Y
258
N
N
Y
259
N
C
Y
260
N
N
Y
261
N
C
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
N
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
N
C
N
319
N
C
N
320
N
O
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
N
Y
334
N
C
Y
335
N
C
Y
336
N
N
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
S
C
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
N
400
N
C
N
401
N
C
N
402
N
C
N
403
N
N
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
S
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
P
N
441
N
O
N
442
N
O
N
443
N
C
N
444
R
C
N
445
S
C
N
446
N
O
N
447
N
C
N
448
R
C
N
449
N
O
N
450
N
N
Y
451
N
C
Y
452
N
C
N
453
N
N
N
454
N
C
Y
455
N
N
Y
456
N
C
N
457
N
N
Y
458
N
N
Y
459
N
C
N
460
N
O
N
461
N
O
N
462
N
C
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
O
N
482
N
H
N
483
N
N
N
484
S
C
N
485
N
C
N
486
N
O
N
487
N
C
Y
488
N
C
Y
489
N
C
Y
490
N
C
Y
491
N
C
Y
492
N
C
Y
493
N
C
N
494
N
O
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
N
N
507
S
C
N
508
N
C
N
509
N
O
N
510
N
C
N
511
N
C
N
512
N
C
N
513
N
O
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
N
N
524
S
C
N
525
N
C
N
526
N
O
N
527
N
C
N
528
N
O
N
529
N
O
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
N
N
538
S
C
N
539
N
C
N
540
N
O
N
541
R
C
N
542
N
O
N
543
N
C
N
544
N
O
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
N
N
555
S
C
N
556
N
C
N
557
N
O
N
558
N
C
Y
559
N
C
Y
560
N
C
Y
561
N
C
Y
562
N
C
Y
563
N
C
Y
564
N
C
N
565
N
O
N
566
N
O
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
N
N
579
S
C
N
580
N
C
N
581
N
O
N
582
N
C
N
583
N
C
N
584
N
C
N
585
N
O
N
586
N
H
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
H
N
593
N
H
N
594
N
H
N
595
N
H
N
596
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
Y
265
N
sing
Y
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
Y
270
N
sing
Y
271
N
doub
N
272
N
sing
Y
273
N
doub
N
274
N
sing
N
275
N
sing
Y
276
N
sing
Y
277
N
doub
N
278
N
sing
Y
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
Y
337
N
sing
Y
338
N
doub
Y
339
N
doub
N
340
N
sing
Y
341
N
sing
N
342
N
sing
Y
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
Y
436
N
sing
Y
437
N
doub
N
438
N
sing
N
439
N
sing
Y
440
N
doub
Y
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
Y
446
N
sing
Y
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
doub
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
Y
489
N
doub
Y
490
N
sing
Y
491
N
sing
N
492
N
sing
Y
493
N
doub
N
494
N
sing
Y
495
N
doub
N
496
N
sing
Y
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
doub
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
doub
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
doub
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
doub
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
Y
558
N
doub
Y
559
N
sing
Y
560
N
sing
N
561
N
sing
Y
562
N
doub
N
563
N
sing
Y
564
N
doub
N
565
N
sing
Y
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
doub
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
137
7011
7014
10.1021/jacs.5b02701
25988947
Structural Basis for Error-Free Bypass of the 5-N-Methylformamidopyrimidine-dG Lesion by Human DNA Polymerase eta and Sulfolobus solfataricus P2 Polymerase IV.
2015
10.2210/pdb4rua/pdb
pdb_00004rua
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-02-01
MARMOSAIC 300 mm CCD
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.07810
1.0
21-ID-D
APS
1.07810
SYNCHROTRON
APS BEAMLINE 21-ID-D
39019.523
DNA polymerase IV
2.7.7.7
UNP residues 1-341
1
man
polymer
5419.534
Nucleic acids Template: TCAT(MF7)GAATCCTTCCCCC
1
syn
polymer
4096.670
Nucleic acids Primar: GGGGGAAGGATTC
1
syn
polymer
491.182
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
1
syn
non-polymer
40.078
CALCIUM ION
3
syn
non-polymer
18.015
water
36
nat
water
Pol IV
no
no
MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV
YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP
NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR
VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ
KILEEDERKIRRIGVRFSKFI
MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV
YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP
NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR
VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ
KILEEDERKIRRIGVRFSKFI
A
polypeptide(L)
no
yes
(DT)(DC)(DA)(DT)(MF7)(DG)(DA)(DA)(DT)(DC)(DC)(DT)(DT)(DC)(DC)(DC)(DC)(DC)
TCATXGAATCCTTCCCCC
T
polydeoxyribonucleotide
no
no
(DG)(DG)(DG)(DG)(DG)(DA)(DA)(DG)(DG)(DA)(DT)(DT)(DC)
GGGGGAAGGATTC
P
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 35092 / DSM 1617 / JCM 11322 / P2
sample
dbh, dpo4, SSO2448
273057
Sulfolobus solfataricus P2
562
Escherichia coli
1
2.70
54.42
VAPOR DIFFUSION, HANGING DROP
7.4
50 MM TRIS HCL,PH 7.4, 15% PEG3350, 100MM CALCIUM DIACETATE, 2.5% GLYCEROL , VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
-9.634
1
19
T
406
P
513
6.474
T_DG406:DC513_P
1
-5.244
-1.052
-0.433
0.036
6.199
1
20
T
407
P
512
5.087
T_DA407:DT512_P
2
4.719
0.121
-0.195
-0.229
6.879
T
408
P
511
5.084
T_DA408:DT511_P
3
-14.314
-0.713
0.174
0.176
5.730
1
20
T
409
P
510
-2.975
T_DT409:DA510_P
4
-8.659
-0.764
0.104
-0.166
0.704
1
19
T
410
P
509
5.140
T_DC410:DG509_P
5
-7.888
0.154
-0.024
-0.022
-7.276
1
19
T
411
P
508
0.276
T_DC411:DG508_P
6
-5.214
-0.314
0.287
-0.190
5.663
1
20
T
412
P
507
2.354
T_DT412:DA507_P
7
-9.240
-0.144
-0.195
-0.156
0.580
1
20
T
413
P
506
1.682
T_DT413:DA506_P
8
-10.954
0.061
-0.115
-0.129
-4.138
1
19
T
414
P
505
3.830
T_DC414:DG505_P
9
-2.806
-0.105
0.016
-0.098
-7.320
1
19
T
415
P
504
3.748
T_DC415:DG504_P
10
-6.546
0.100
0.121
-0.188
-5.505
1
19
T
416
P
503
-3.735
T_DC416:DG503_P
11
-7.354
0.475
0.444
-0.347
-3.736
1
19
T
417
P
502
-0.560
T_DC417:DG502_P
12
-2.822
0.257
-0.097
-0.283
2.920
1
19
T
418
P
501
-4.208
T_DC418:DG501_P
13
-0.423
0.139
-0.176
-0.099
2.818
30.838
T
T
406
407
16.413
P
P
513
512
3.008
8.591
0.142
-0.110
TT_DG406DA407:DT512DC513_PP
1
-4.155
7.938
29.358
-1.735
-1.006
3.335
32.256
T
T
407
408
3.300
P
P
512
511
3.315
1.831
-0.557
-0.021
TT_DA407DA408:DT511DT512_PP
2
-1.923
3.464
32.149
-0.370
0.655
3.275
28.817
T
T
408
409
11.437
P
P
511
510
3.462
5.639
-0.421
-0.768
TT_DA408DT409:DA510DT511_PP
3
-3.953
8.017
27.999
-2.860
-0.077
3.332
41.820
T
T
409
410
-2.784
P
P
510
509
3.318
-1.987
0.671
-0.430
TT_DT409DC410:DG509DA510_PP
4
-0.157
0.221
41.774
-0.390
-0.956
3.539
30.067
T
T
410
411
1.349
P
P
509
508
3.528
0.699
-0.510
-0.806
TT_DC410DC411:DG508DG509_PP
5
-2.641
5.097
29.946
-1.710
0.397
2.932
34.087
T
T
411
412
8.152
P
P
508
507
2.971
4.751
0.109
-0.009
TT_DC411DT412:DA507DG508_PP
6
4.410
-7.567
33.482
-0.703
0.452
3.297
34.351
T
T
412
413
7.979
P
P
507
506
3.367
4.698
0.317
-0.248
TT_DT412DT413:DA506DA507_PP
7
-0.727
1.235
34.030
-1.171
-0.654
3.365
32.761
T
T
413
414
5.209
P
P
506
505
3.413
2.934
0.658
-0.522
TT_DT413DC414:DG505DA506_PP
8
0.569
-1.011
32.628
-1.451
-1.065
3.049
31.224
T
T
414
415
18.321
P
P
505
504
3.374
9.705
-0.413
-0.551
TT_DC414DC415:DG504DG505_PP
9
-0.199
0.376
29.713
-2.880
0.729
3.263
35.454
T
T
415
416
10.060
P
P
504
503
3.333
6.088
-0.650
-0.431
TT_DC415DC416:DG503DG504_PP
10
-3.603
5.954
34.764
-1.617
0.529
3.348
32.048
T
T
416
417
7.561
P
P
503
502
3.245
4.122
1.176
-0.465
TT_DC416DC417:DG502DG503_PP
11
7.917
-14.522
30.811
-1.606
-0.662
3.264
30.425
T
T
417
418
8.486
P
P
502
501
3.257
4.438
-0.650
0.202
TT_DC417DC418:DG501DG502_PP
12
-0.578
1.104
30.102
-0.504
1.123
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
pdbx_validate_polymer_linkage
struct_conn
struct_site
repository
Initial release
Advisory
Data collection
Database references
Derived calculations
Refinement description
1
0
2015-08-05
1
1
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2014-11-18
REL
REL
DTP
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
CA
CALCIUM ION
HOH
water
Chemically Synthesized
32630
synthetic construct
sample
Chemically Synthesized
32630
synthetic construct
sample
2BQU
PDB code 2BQU
PDB
experimental model
DTP
600
4
DTP
DTP
401
A
CA
1
5
CA
CA
402
A
CA
2
5
CA
CA
403
A
CA
3
5
CA
CA
404
A
HOH
2007
6
HOH
HOH
501
A
HOH
2008
6
HOH
HOH
502
A
HOH
2009
6
HOH
HOH
503
A
HOH
2010
6
HOH
HOH
504
A
HOH
2011
6
HOH
HOH
505
A
HOH
2012
6
HOH
HOH
506
A
HOH
2015
6
HOH
HOH
507
A
HOH
2016
6
HOH
HOH
508
A
HOH
2018
6
HOH
HOH
509
A
HOH
2019
6
HOH
HOH
510
A
HOH
2024
6
HOH
HOH
511
A
HOH
2025
6
HOH
HOH
512
A
HOH
2026
6
HOH
HOH
513
A
HOH
2028
6
HOH
HOH
514
A
HOH
2029
6
HOH
HOH
515
A
HOH
2030
6
HOH
HOH
516
A
HOH
2031
6
HOH
HOH
517
A
HOH
2032
6
HOH
HOH
518
A
HOH
2033
6
HOH
HOH
519
A
HOH
2034
6
HOH
HOH
520
A
HOH
2038
6
HOH
HOH
521
A
HOH
2039
6
HOH
HOH
522
A
HOH
2041
6
HOH
HOH
523
A
HOH
2013
6
HOH
HOH
524
A
HOH
2002
6
HOH
HOH
501
T
HOH
2003
6
HOH
HOH
502
T
HOH
2014
6
HOH
HOH
503
T
HOH
2027
6
HOH
HOH
504
T
HOH
2001
6
HOH
HOH
2001
P
HOH
2017
6
HOH
HOH
2002
P
HOH
2020
6
HOH
HOH
2003
P
HOH
2023
6
HOH
HOH
2004
P
HOH
2035
6
HOH
HOH
2005
P
HOH
2036
6
HOH
HOH
2006
P
HOH
2037
6
HOH
HOH
2007
P
HOH
2040
6
HOH
HOH
2008
P
MET
1
n
1
MET
1
A
ILE
2
n
2
ILE
2
A
VAL
3
n
3
VAL
3
A
LEU
4
n
4
LEU
4
A
PHE
5
n
5
PHE
5
A
VAL
6
n
6
VAL
6
A
ASP
7
n
7
ASP
7
A
PHE
8
n
8
PHE
8
A
ASP
9
n
9
ASP
9
A
TYR
10
n
10
TYR
10
A
PHE
11
n
11
PHE
11
A
TYR
12
n
12
TYR
12
A
ALA
13
n
13
ALA
13
A
GLN
14
n
14
GLN
14
A
VAL
15
n
15
VAL
15
A
GLU
16
n
16
GLU
16
A
GLU
17
n
17
GLU
17
A
VAL
18
n
18
VAL
18
A
LEU
19
n
19
LEU
19
A
ASN
20
n
20
ASN
20
A
PRO
21
n
21
PRO
21
A
SER
22
n
22
SER
22
A
LEU
23
n
23
LEU
23
A
LYS
24
n
24
LYS
24
A
GLY
25
n
25
GLY
25
A
LYS
26
n
26
LYS
26
A
PRO
27
n
27
PRO
27
A
VAL
28
n
28
VAL
28
A
VAL
29
n
29
VAL
29
A
VAL
30
n
30
VAL
30
A
CYS
31
n
31
CYS
31
A
VAL
32
n
32
VAL
32
A
PHE
33
n
33
PHE
33
A
SER
34
n
34
SER
34
A
GLY
35
n
35
GLY
35
A
ARG
36
n
36
ARG
36
A
PHE
37
n
37
PHE
37
A
GLU
38
n
38
GLU
38
A
ASP
39
n
39
ASP
39
A
SER
40
n
40
SER
40
A
GLY
41
n
41
GLY
41
A
ALA
42
n
42
ALA
42
A
VAL
43
n
43
VAL
43
A
ALA
44
n
44
ALA
44
A
THR
45
n
45
THR
45
A
ALA
46
n
46
ALA
46
A
ASN
47
n
47
ASN
47
A
TYR
48
n
48
TYR
48
A
GLU
49
n
49
GLU
49
A
ALA
50
n
50
ALA
50
A
ARG
51
n
51
ARG
51
A
LYS
52
n
52
LYS
52
A
PHE
53
n
53
PHE
53
A
GLY
54
n
54
GLY
54
A
VAL
55
n
55
VAL
55
A
LYS
56
n
56
LYS
56
A
ALA
57
n
57
ALA
57
A
GLY
58
n
58
GLY
58
A
ILE
59
n
59
ILE
59
A
PRO
60
n
60
PRO
60
A
ILE
61
n
61
ILE
61
A
VAL
62
n
62
VAL
62
A
GLU
63
n
63
GLU
63
A
ALA
64
n
64
ALA
64
A
LYS
65
n
65
LYS
65
A
LYS
66
n
66
LYS
66
A
ILE
67
n
67
ILE
67
A
LEU
68
n
68
LEU
68
A
PRO
69
n
69
PRO
69
A
ASN
70
n
70
ASN
70
A
ALA
71
n
71
ALA
71
A
VAL
72
n
72
VAL
72
A
TYR
73
n
73
TYR
73
A
LEU
74
n
74
LEU
74
A
PRO
75
n
75
PRO
75
A
MET
76
n
76
MET
76
A
ARG
77
n
77
ARG
77
A
LYS
78
n
78
LYS
78
A
GLU
79
n
79
GLU
79
A
VAL
80
n
80
VAL
80
A
TYR
81
n
81
TYR
81
A
GLN
82
n
82
GLN
82
A
GLN
83
n
83
GLN
83
A
VAL
84
n
84
VAL
84
A
SER
85
n
85
SER
85
A
SER
86
n
86
SER
86
A
ARG
87
n
87
ARG
87
A
ILE
88
n
88
ILE
88
A
MET
89
n
89
MET
89
A
ASN
90
n
90
ASN
90
A
LEU
91
n
91
LEU
91
A
LEU
92
n
92
LEU
92
A
ARG
93
n
93
ARG
93
A
GLU
94
n
94
GLU
94
A
TYR
95
n
95
TYR
95
A
SER
96
n
96
SER
96
A
GLU
97
n
97
GLU
97
A
LYS
98
n
98
LYS
98
A
ILE
99
n
99
ILE
99
A
GLU
100
n
100
GLU
100
A
ILE
101
n
101
ILE
101
A
ALA
102
n
102
ALA
102
A
SER
103
n
103
SER
103
A
ILE
104
n
104
ILE
104
A
ASP
105
n
105
ASP
105
A
GLU
106
n
106
GLU
106
A
ALA
107
n
107
ALA
107
A
TYR
108
n
108
TYR
108
A
LEU
109
n
109
LEU
109
A
ASP
110
n
110
ASP
110
A
ILE
111
n
111
ILE
111
A
SER
112
n
112
SER
112
A
ASP
113
n
113
ASP
113
A
LYS
114
n
114
LYS
114
A
VAL
115
n
115
VAL
115
A
ARG
116
n
116
ARG
116
A
ASP
117
n
117
ASP
117
A
TYR
118
n
118
TYR
118
A
ARG
119
n
119
ARG
119
A
GLU
120
n
120
GLU
120
A
ALA
121
n
121
ALA
121
A
TYR
122
n
122
TYR
122
A
ASN
123
n
123
ASN
123
A
LEU
124
n
124
LEU
124
A
GLY
125
n
125
GLY
125
A
LEU
126
n
126
LEU
126
A
GLU
127
n
127
GLU
127
A
ILE
128
n
128
ILE
128
A
LYS
129
n
129
LYS
129
A
ASN
130
n
130
ASN
130
A
LYS
131
n
131
LYS
131
A
ILE
132
n
132
ILE
132
A
LEU
133
n
133
LEU
133
A
GLU
134
n
134
GLU
134
A
LYS
135
n
135
LYS
135
A
GLU
136
n
136
GLU
136
A
LYS
137
n
137
LYS
137
A
ILE
138
n
138
ILE
138
A
THR
139
n
139
THR
139
A
VAL
140
n
140
VAL
140
A
THR
141
n
141
THR
141
A
VAL
142
n
142
VAL
142
A
GLY
143
n
143
GLY
143
A
ILE
144
n
144
ILE
144
A
SER
145
n
145
SER
145
A
LYS
146
n
146
LYS
146
A
ASN
147
n
147
ASN
147
A
LYS
148
n
148
LYS
148
A
VAL
149
n
149
VAL
149
A
PHE
150
n
150
PHE
150
A
ALA
151
n
151
ALA
151
A
LYS
152
n
152
LYS
152
A
ILE
153
n
153
ILE
153
A
ALA
154
n
154
ALA
154
A
ALA
155
n
155
ALA
155
A
ASP
156
n
156
ASP
156
A
MET
157
n
157
MET
157
A
ALA
158
n
158
ALA
158
A
LYS
159
n
159
LYS
159
A
PRO
160
n
160
PRO
160
A
ASN
161
n
161
ASN
161
A
GLY
162
n
162
GLY
162
A
ILE
163
n
163
ILE
163
A
LYS
164
n
164
LYS
164
A
VAL
165
n
165
VAL
165
A
ILE
166
n
166
ILE
166
A
ASP
167
n
167
ASP
167
A
ASP
168
n
168
ASP
168
A
GLU
169
n
169
GLU
169
A
GLU
170
n
170
GLU
170
A
VAL
171
n
171
VAL
171
A
LYS
172
n
172
LYS
172
A
ARG
173
n
173
ARG
173
A
LEU
174
n
174
LEU
174
A
ILE
175
n
175
ILE
175
A
ARG
176
n
176
ARG
176
A
GLU
177
n
177
GLU
177
A
LEU
178
n
178
LEU
178
A
ASP
179
n
179
ASP
179
A
ILE
180
n
180
ILE
180
A
ALA
181
n
181
ALA
181
A
ASP
182
n
182
ASP
182
A
VAL
183
n
183
VAL
183
A
PRO
184
n
184
PRO
184
A
GLY
185
n
185
GLY
185
A
ILE
186
n
186
ILE
186
A
GLY
187
n
187
GLY
187
A
ASN
188
n
188
ASN
188
A
ILE
189
n
189
ILE
189
A
THR
190
n
190
THR
190
A
ALA
191
n
191
ALA
191
A
GLU
192
n
192
GLU
192
A
LYS
193
n
193
LYS
193
A
LEU
194
n
194
LEU
194
A
LYS
195
n
195
LYS
195
A
LYS
196
n
196
LYS
196
A
LEU
197
n
197
LEU
197
A
GLY
198
n
198
GLY
198
A
ILE
199
n
199
ILE
199
A
ASN
200
n
200
ASN
200
A
LYS
201
n
201
LYS
201
A
LEU
202
n
202
LEU
202
A
VAL
203
n
203
VAL
203
A
ASP
204
n
204
ASP
204
A
THR
205
n
205
THR
205
A
LEU
206
n
206
LEU
206
A
SER
207
n
207
SER
207
A
ILE
208
n
208
ILE
208
A
GLU
209
n
209
GLU
209
A
PHE
210
n
210
PHE
210
A
ASP
211
n
211
ASP
211
A
LYS
212
n
212
LYS
212
A
LEU
213
n
213
LEU
213
A
LYS
214
n
214
LYS
214
A
GLY
215
n
215
GLY
215
A
MET
216
n
216
MET
216
A
ILE
217
n
217
ILE
217
A
GLY
218
n
218
GLY
218
A
GLU
219
n
219
GLU
219
A
ALA
220
n
220
ALA
220
A
LYS
221
n
221
LYS
221
A
ALA
222
n
222
ALA
222
A
LYS
223
n
223
LYS
223
A
TYR
224
n
224
TYR
224
A
LEU
225
n
225
LEU
225
A
ILE
226
n
226
ILE
226
A
SER
227
n
227
SER
227
A
LEU
228
n
228
LEU
228
A
ALA
229
n
229
ALA
229
A
ARG
230
n
230
ARG
230
A
ASP
231
n
231
ASP
231
A
GLU
232
n
232
GLU
232
A
TYR
233
n
233
TYR
233
A
ASN
234
n
234
ASN
234
A
GLU
235
n
235
GLU
235
A
PRO
236
n
236
PRO
236
A
ILE
237
n
237
ILE
237
A
ARG
238
n
238
ARG
238
A
THR
239
n
239
THR
239
A
ARG
240
n
240
ARG
240
A
VAL
241
n
241
VAL
241
A
ARG
242
n
242
ARG
242
A
LYS
243
n
243
LYS
243
A
SER
244
n
244
SER
244
A
ILE
245
n
245
ILE
245
A
GLY
246
n
246
GLY
246
A
ARG
247
n
247
ARG
247
A
ILE
248
n
248
ILE
248
A
VAL
249
n
249
VAL
249
A
THR
250
n
250
THR
250
A
MET
251
n
251
MET
251
A
LYS
252
n
252
LYS
252
A
ARG
253
n
253
ARG
253
A
ASN
254
n
254
ASN
254
A
SER
255
n
255
SER
255
A
ARG
256
n
256
ARG
256
A
ASN
257
n
257
ASN
257
A
LEU
258
n
258
LEU
258
A
GLU
259
n
259
GLU
259
A
GLU
260
n
260
GLU
260
A
ILE
261
n
261
ILE
261
A
LYS
262
n
262
LYS
262
A
PRO
263
n
263
PRO
263
A
TYR
264
n
264
TYR
264
A
LEU
265
n
265
LEU
265
A
PHE
266
n
266
PHE
266
A
ARG
267
n
267
ARG
267
A
ALA
268
n
268
ALA
268
A
ILE
269
n
269
ILE
269
A
GLU
270
n
270
GLU
270
A
GLU
271
n
271
GLU
271
A
SER
272
n
272
SER
272
A
TYR
273
n
273
TYR
273
A
TYR
274
n
274
TYR
274
A
LYS
275
n
275
LYS
275
A
LEU
276
n
276
LEU
276
A
ASP
277
n
277
ASP
277
A
LYS
278
n
278
LYS
278
A
ARG
279
n
279
ARG
279
A
ILE
280
n
280
ILE
280
A
PRO
281
n
281
PRO
281
A
LYS
282
n
282
LYS
282
A
ALA
283
n
283
ALA
283
A
ILE
284
n
284
ILE
284
A
HIS
285
n
285
HIS
285
A
VAL
286
n
286
VAL
286
A
VAL
287
n
287
VAL
287
A
ALA
288
n
288
ALA
288
A
VAL
289
n
289
VAL
289
A
THR
290
n
290
THR
290
A
GLU
291
n
291
GLU
291
A
ASP
292
n
292
ASP
292
A
LEU
293
n
293
LEU
293
A
ASP
294
n
294
ASP
294
A
ILE
295
n
295
ILE
295
A
VAL
296
n
296
VAL
296
A
SER
297
n
297
SER
297
A
ARG
298
n
298
ARG
298
A
GLY
299
n
299
GLY
299
A
ARG
300
n
300
ARG
300
A
THR
301
n
301
THR
301
A
PHE
302
n
302
PHE
302
A
PRO
303
n
303
PRO
303
A
HIS
304
n
304
HIS
304
A
GLY
305
n
305
GLY
305
A
ILE
306
n
306
ILE
306
A
SER
307
n
307
SER
307
A
LYS
308
n
308
LYS
308
A
GLU
309
n
309
GLU
309
A
THR
310
n
310
THR
310
A
ALA
311
n
311
ALA
311
A
TYR
312
n
312
TYR
312
A
SER
313
n
313
SER
313
A
GLU
314
n
314
GLU
314
A
SER
315
n
315
SER
315
A
VAL
316
n
316
VAL
316
A
LYS
317
n
317
LYS
317
A
LEU
318
n
318
LEU
318
A
LEU
319
n
319
LEU
319
A
GLN
320
n
320
GLN
320
A
LYS
321
n
321
LYS
321
A
ILE
322
n
322
ILE
322
A
LEU
323
n
323
LEU
323
A
GLU
324
n
324
GLU
324
A
GLU
325
n
325
GLU
325
A
ASP
326
n
326
ASP
326
A
GLU
327
n
327
GLU
327
A
ARG
328
n
328
ARG
328
A
LYS
329
n
329
LYS
329
A
ILE
330
n
330
ILE
330
A
ARG
331
n
331
ARG
331
A
ARG
332
n
332
ARG
332
A
ILE
333
n
333
ILE
333
A
GLY
334
n
334
GLY
334
A
VAL
335
n
335
VAL
335
A
ARG
336
n
336
ARG
336
A
PHE
337
n
337
PHE
337
A
SER
338
n
338
SER
338
A
LYS
339
n
339
LYS
339
A
PHE
340
n
340
PHE
340
A
ILE
341
n
341
ILE
341
A
n
1
401
T
DC
402
n
2
DC
402
T
DA
403
n
3
DA
403
T
DT
404
n
4
DT
404
T
MF7
405
n
5
MF7
405
T
DG
406
n
6
DG
406
T
DA
407
n
7
DA
407
T
DA
408
n
8
DA
408
T
DT
409
n
9
DT
409
T
DC
410
n
10
DC
410
T
DC
411
n
11
DC
411
T
DT
412
n
12
DT
412
T
DT
413
n
13
DT
413
T
DC
414
n
14
DC
414
T
DC
415
n
15
DC
415
T
DC
416
n
16
DC
416
T
DC
417
n
17
DC
417
T
DC
418
n
18
DC
418
T
DG
501
n
1
DG
501
P
DG
502
n
2
DG
502
P
DG
503
n
3
DG
503
P
DG
504
n
4
DG
504
P
DG
505
n
5
DG
505
P
DA
506
n
6
DA
506
P
DA
507
n
7
DA
507
P
DG
508
n
8
DG
508
P
DG
509
n
9
DG
509
P
DA
510
n
10
DA
510
P
DT
511
n
11
DT
511
P
DT
512
n
12
DT
512
P
DC
513
n
13
DC
513
P
author_and_software_defined_assembly
PISA
3
trimeric
5250
-70
20780
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
A
ASP
7
A
OD2
ASP
7
1_555
43.3
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
A
PHE
8
A
O
PHE
8
1_555
68.4
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
A
PHE
8
A
O
PHE
8
1_555
106.7
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
A
ASP
105
A
OD1
ASP
105
1_555
81.0
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
A
ASP
105
A
OD1
ASP
105
1_555
74.6
A
PHE
8
A
O
PHE
8
1_555
A
CA
403
F
CA
CA
1_555
A
ASP
105
A
OD1
ASP
105
1_555
71.4
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
A
ASP
105
A
OD2
ASP
105
1_555
84.7
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
A
ASP
105
A
OD2
ASP
105
1_555
50.3
A
PHE
8
A
O
PHE
8
1_555
A
CA
403
F
CA
CA
1_555
A
ASP
105
A
OD2
ASP
105
1_555
113.0
A
ASP
105
A
OD1
ASP
105
1_555
A
CA
403
F
CA
CA
1_555
A
ASP
105
A
OD2
ASP
105
1_555
43.7
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O1B
DTP
1_555
170.4
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O1B
DTP
1_555
145.6
A
PHE
8
A
O
PHE
8
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O1B
DTP
1_555
105.2
A
ASP
105
A
OD1
ASP
105
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O1B
DTP
1_555
104.2
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O1B
DTP
1_555
104.7
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O3G
DTP
1_555
83.6
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O3G
DTP
1_555
84.9
A
PHE
8
A
O
PHE
8
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O3G
DTP
1_555
114.9
A
ASP
105
A
OD1
ASP
105
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O3G
DTP
1_555
159.5
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O3G
DTP
1_555
121.6
A
DTP
401
D
O1B
DTP
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O3G
DTP
1_555
93.2
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O1A
DTP
1_555
100.5
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O1A
DTP
1_555
58.7
A
PHE
8
A
O
PHE
8
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O1A
DTP
1_555
162.0
A
ASP
105
A
OD1
ASP
105
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O1A
DTP
1_555
93.4
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O1A
DTP
1_555
50.3
A
DTP
401
D
O1B
DTP
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O1A
DTP
1_555
87.5
A
DTP
401
D
O3G
DTP
1_555
A
CA
403
F
CA
CA
1_555
A
DTP
401
D
O1A
DTP
1_555
76.3
A
GLU
106
A
OE2
GLU
106
1_555
A
CA
404
G
CA
CA
1_555
A
DTP
401
D
O2A
DTP
1_555
96.3
A
GLU
106
A
OE2
GLU
106
1_555
A
CA
404
G
CA
CA
1_555
A
HOH
523
H
O
HOH
1_555
141.2
A
DTP
401
D
O2A
DTP
1_555
A
CA
404
G
CA
CA
1_555
A
HOH
523
H
O
HOH
1_555
60.0
A
ALA
181
A
O
ALA
181
1_555
A
CA
402
E
CA
CA
1_555
A
ILE
186
A
O
ILE
186
1_555
91.1
A
ALA
181
A
O
ALA
181
1_555
A
CA
402
E
CA
CA
1_555
A
HOH
521
H
O
HOH
1_555
76.4
A
ILE
186
A
O
ILE
186
1_555
A
CA
402
E
CA
CA
1_555
A
HOH
521
H
O
HOH
1_555
159.2
A
ALA
181
A
O
ALA
181
1_555
A
CA
402
E
CA
CA
1_555
P
HOH
2006
J
O
HOH
1_555
74.6
A
ILE
186
A
O
ILE
186
1_555
A
CA
402
E
CA
CA
1_555
P
HOH
2006
J
O
HOH
1_555
83.2
A
HOH
521
H
O
HOH
1_555
A
CA
402
E
CA
CA
1_555
P
HOH
2006
J
O
HOH
1_555
77.6
A
ALA
181
A
O
ALA
181
1_555
A
CA
402
E
CA
CA
1_555
P
HOH
2008
J
O
HOH
1_555
133.7
A
ILE
186
A
O
ILE
186
1_555
A
CA
402
E
CA
CA
1_555
P
HOH
2008
J
O
HOH
1_555
116.4
A
HOH
521
H
O
HOH
1_555
A
CA
402
E
CA
CA
1_555
P
HOH
2008
J
O
HOH
1_555
65.2
P
HOH
2006
J
O
HOH
1_555
A
CA
402
E
CA
CA
1_555
P
HOH
2008
J
O
HOH
1_555
72.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
100
A
N
GLU
100
A
O
TYR
108
A
O
TYR
108
A
O
ALA
107
A
O
ALA
107
A
N
VAL
6
A
N
VAL
6
A
N
PHE
5
A
N
PHE
5
A
O
GLY
143
A
O
GLY
143
A
N
VAL
142
A
N
VAL
142
A
O
LYS
164
A
O
LYS
164
A
O
ALA
42
A
O
ALA
42
A
N
VAL
32
A
N
VAL
32
A
N
VAL
29
A
N
VAL
29
A
O
VAL
72
A
O
VAL
72
A
N
ILE
245
A
N
ILE
245
A
O
PHE
337
A
O
PHE
337
A
O
ILE
333
A
O
ILE
333
A
N
VAL
249
A
N
VAL
249
A
N
ILE
245
A
N
ILE
245
A
O
PHE
337
A
O
PHE
337
A
O
GLY
334
A
O
GLY
334
A
N
VAL
287
A
N
VAL
287
A
N
VAL
286
A
N
VAL
286
A
O
ARG
298
A
O
ARG
298
1
T
P
DC
402
B
P
DC
2
1
Y
1
T
OP1
DC
402
B
OP1
DC
2
1
Y
1
T
OP2
DC
402
B
OP2
DC
2
1
Y
1
T
N1
DC
402
B
N1
DC
2
0
Y
1
T
C4
DC
402
B
C4
DC
2
0
Y
1
T
C5
DC
402
B
C5
DC
2
0
Y
1
T
DT
401
B
DT
1
1
Y
1
27.57
1.20
119.70
147.27
T
T
T
C3'
O3'
P
MF7
MF7
DG
405
405
406
Y
1
-16.95
2.20
105.20
88.25
T
T
T
O3'
P
OP2
MF7
DG
DG
405
406
406
Y
1
12.24
1.10
110.50
122.74
T
T
T
O3'
P
OP1
MF7
DG
DG
405
406
406
Y
1
8.71
1.10
109.80
118.51
P
P
P
C5'
C4'
O4'
DG
DG
DG
502
502
502
N
1
T
T
O3'
P
MF7
DG
405
406
-0.405
0.012
1.607
1.202
Y
1
A
TYR
10
23.44
57.09
1
A
ALA
44
-97.45
-64.23
1
A
ASN
70
-105.48
45.60
1
A
GLU
94
-96.91
31.29
1
A
SER
96
154.83
133.54
1
A
ALA
102
-75.65
-75.91
1
A
SER
103
-116.49
-165.89
1
A
SER
145
-169.46
-164.28
1
A
ASN
161
38.85
27.69
1
A
GLU
169
-72.78
-73.67
1
A
LYS
172
-15.71
-66.73
1
A
ASP
231
98.56
18.56
1
A
ASN
234
-148.62
51.58
1
A
THR
239
-14.76
140.55
1
A
ASP
277
58.34
-150.91
1
A
ASP
292
-92.49
38.24
1
A
PHE
340
-68.89
-166.61
88.239
1.29
0.00
0.00
-0.92
-0.00
-0.37
0.968
0.926
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.25827
0.16330
0.16843
3.07
50.0
521
9612
5.1
98.02
23.652
0.412
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.484
0.80
0.80
1.20
PDB code 2BQU
MAXIMUM LIKELIHOOD
MASK
3.07
50.0
36
3424
33
611
2744
0.010
0.018
3489
0.002
0.020
3198
1.527
1.841
4815
1.267
3.000
7385
6.949
5.000
340
37.216
23.636
121
18.140
15.000
563
12.190
15.000
24
0.086
0.200
520
0.006
0.020
3410
0.002
0.020
747
5.712
8.100
1363
5.713
8.099
1362
8.542
12.160
1702
8.315
12.105
1703
7.660
9.278
2126
7.270
9.248
2127
11.388
13.542
3114
15.826
80.734
14498
15.826
80.735
14499
0.497
0.260
3.148
32
594
20
82.48
3.068
50.00
4RUA
10134
0
-3
0.112
0.112
1
16.378
6.2
98.4
0.680
3.10
3.15
1.072
0.680
1
3.1
84.7
0.608
3.15
3.21
1.405
0.608
1
3.5
92.9
0.531
3.21
3.27
1.907
0.531
1
4.0
95.8
0.476
3.27
3.34
2.445
0.476
1
4.5
99.2
0.455
3.34
3.41
3.214
0.455
1
5.2
98.6
0.437
3.41
3.49
3.628
0.437
1
5.9
100.0
data collection
MD2
diffractometer software from EMBL
phasing
PHASER
(MR)
refinement
REFMAC
5.8.0073
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of Y-family DNA polymerase Dpo4 bypassing a MeFapy-dG adduct
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
A
TYR
10
A
TYR
10
HELX_P
A
ASN
20
A
ASN
20
1
1
11
A
PRO
21
A
PRO
21
HELX_P
A
LYS
24
A
LYS
24
5
2
4
A
ASN
47
A
ASN
47
HELX_P
A
PHE
53
A
PHE
53
1
3
7
A
PRO
60
A
PRO
60
HELX_P
A
LEU
68
A
LEU
68
1
4
9
A
ARG
77
A
ARG
77
HELX_P
A
GLU
94
A
GLU
94
1
5
18
A
ASP
117
A
ASP
117
HELX_P
A
LYS
137
A
LYS
137
1
6
21
A
ASN
147
A
ASN
147
HELX_P
A
LYS
159
A
LYS
159
1
7
13
A
GLU
170
A
GLU
170
HELX_P
A
LEU
178
A
LEU
178
1
8
9
A
ASP
179
A
ASP
179
HELX_P
A
VAL
183
A
VAL
183
5
9
5
A
GLY
187
A
GLY
187
HELX_P
A
LYS
196
A
LYS
196
1
10
10
A
VAL
203
A
VAL
203
HELX_P
A
ILE
208
A
ILE
208
1
11
6
A
GLU
209
A
GLU
209
HELX_P
A
GLY
218
A
GLY
218
1
12
10
A
GLY
218
A
GLY
218
HELX_P
A
ASP
231
A
ASP
231
1
13
14
A
ASN
257
A
ASN
257
HELX_P
A
ASP
277
A
ASP
277
1
14
21
A
SER
307
A
SER
307
HELX_P
A
ASP
326
A
ASP
326
1
15
20
covale
1.638
both
T
DT
404
B
O3'
DT
4
1_555
T
MF7
405
B
P1
MF7
5
1_555
covale
1.202
one
T
MF7
405
B
O3'
MF7
5
1_555
T
DG
406
B
P
DG
6
1_555
metalc
2.281
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
metalc
3.192
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
403
F
CA
CA
1_555
metalc
2.191
A
PHE
8
A
O
PHE
8
1_555
A
CA
403
F
CA
CA
1_555
metalc
2.358
A
ASP
105
A
OD1
ASP
105
1_555
A
CA
403
F
CA
CA
1_555
metalc
3.184
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
403
F
CA
CA
1_555
metalc
2.829
A
GLU
106
A
OE2
GLU
106
1_555
A
CA
404
G
CA
CA
1_555
metalc
2.377
A
ALA
181
A
O
ALA
181
1_555
A
CA
402
E
CA
CA
1_555
metalc
2.416
A
ILE
186
A
O
ILE
186
1_555
A
CA
402
E
CA
CA
1_555
metalc
2.241
A
DTP
401
D
O1B
DTP
1_555
A
CA
403
F
CA
CA
1_555
metalc
2.252
A
DTP
401
D
O3G
DTP
1_555
A
CA
403
F
CA
CA
1_555
metalc
2.444
A
DTP
401
D
O1A
DTP
1_555
A
CA
403
F
CA
CA
1_555
metalc
3.121
A
DTP
401
D
O2A
DTP
1_555
A
CA
404
G
CA
CA
1_555
metalc
2.564
A
CA
402
E
CA
CA
1_555
A
HOH
521
H
O
HOH
1_555
metalc
2.380
A
CA
402
E
CA
CA
1_555
P
HOH
2006
J
O
HOH
1_555
metalc
2.629
A
CA
402
E
CA
CA
1_555
P
HOH
2008
J
O
HOH
1_555
metalc
2.388
A
CA
404
G
CA
CA
1_555
A
HOH
523
H
O
HOH
1_555
hydrog
WATSON-CRICK
T
DG
406
B
N1
DG
6
1_555
P
DC
513
C
N3
DC
13
1_555
hydrog
WATSON-CRICK
T
DG
406
B
N2
DG
6
1_555
P
DC
513
C
O2
DC
13
1_555
hydrog
WATSON-CRICK
T
DG
406
B
O6
DG
6
1_555
P
DC
513
C
N4
DC
13
1_555
hydrog
WATSON-CRICK
T
DA
407
B
N1
DA
7
1_555
P
DT
512
C
N3
DT
12
1_555
hydrog
WATSON-CRICK
T
DA
407
B
N6
DA
7
1_555
P
DT
512
C
O4
DT
12
1_555
hydrog
DA-DT PAIR
T
DA
408
B
N1
DA
8
1_555
P
DT
511
C
N3
DT
11
1_555
hydrog
WATSON-CRICK
T
DT
409
B
N3
DT
9
1_555
P
DA
510
C
N1
DA
10
1_555
hydrog
WATSON-CRICK
T
DT
409
B
O4
DT
9
1_555
P
DA
510
C
N6
DA
10
1_555
hydrog
WATSON-CRICK
T
DC
410
B
N3
DC
10
1_555
P
DG
509
C
N1
DG
9
1_555
hydrog
WATSON-CRICK
T
DC
410
B
N4
DC
10
1_555
P
DG
509
C
O6
DG
9
1_555
hydrog
WATSON-CRICK
T
DC
410
B
O2
DC
10
1_555
P
DG
509
C
N2
DG
9
1_555
hydrog
WATSON-CRICK
T
DC
411
B
N3
DC
11
1_555
P
DG
508
C
N1
DG
8
1_555
hydrog
WATSON-CRICK
T
DC
411
B
N4
DC
11
1_555
P
DG
508
C
O6
DG
8
1_555
hydrog
WATSON-CRICK
T
DC
411
B
O2
DC
11
1_555
P
DG
508
C
N2
DG
8
1_555
hydrog
WATSON-CRICK
T
DT
412
B
N3
DT
12
1_555
P
DA
507
C
N1
DA
7
1_555
hydrog
WATSON-CRICK
T
DT
412
B
O4
DT
12
1_555
P
DA
507
C
N6
DA
7
1_555
hydrog
WATSON-CRICK
T
DT
413
B
N3
DT
13
1_555
P
DA
506
C
N1
DA
6
1_555
hydrog
WATSON-CRICK
T
DT
413
B
O4
DT
13
1_555
P
DA
506
C
N6
DA
6
1_555
hydrog
WATSON-CRICK
T
DC
414
B
N3
DC
14
1_555
P
DG
505
C
N1
DG
5
1_555
hydrog
WATSON-CRICK
T
DC
414
B
N4
DC
14
1_555
P
DG
505
C
O6
DG
5
1_555
hydrog
WATSON-CRICK
T
DC
414
B
O2
DC
14
1_555
P
DG
505
C
N2
DG
5
1_555
hydrog
WATSON-CRICK
T
DC
415
B
N3
DC
15
1_555
P
DG
504
C
N1
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
415
B
N4
DC
15
1_555
P
DG
504
C
O6
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
415
B
O2
DC
15
1_555
P
DG
504
C
N2
DG
4
1_555
hydrog
WATSON-CRICK
T
DC
416
B
N3
DC
16
1_555
P
DG
503
C
N1
DG
3
1_555
hydrog
WATSON-CRICK
T
DC
416
B
N4
DC
16
1_555
P
DG
503
C
O6
DG
3
1_555
hydrog
WATSON-CRICK
T
DC
416
B
O2
DC
16
1_555
P
DG
503
C
N2
DG
3
1_555
hydrog
WATSON-CRICK
T
DC
417
B
N3
DC
17
1_555
P
DG
502
C
N1
DG
2
1_555
hydrog
WATSON-CRICK
T
DC
417
B
N4
DC
17
1_555
P
DG
502
C
O6
DG
2
1_555
hydrog
WATSON-CRICK
T
DC
417
B
O2
DC
17
1_555
P
DG
502
C
N2
DG
2
1_555
hydrog
WATSON-CRICK
T
DC
418
B
N3
DC
18
1_555
P
DG
501
C
N1
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
418
B
N4
DC
18
1_555
P
DG
501
C
O6
DG
1
1_555
hydrog
WATSON-CRICK
T
DC
418
B
O2
DC
18
1_555
P
DG
501
C
N2
DG
1
1_555
TRANSFERASE/DNA
Protein, DNA, DNA Damage, DNA-Directed DNA Polymerase, Adenosine triphosphate, Y-family polymerase, trans-lesion synthesis (TLS), DNA Binding, MeFapy-dG lesion bypass, 2, 6-diamino-4-hydroxy N(5)-(methyl)-formamidopyrimidine (MeFapy-dG) lesion, TRANSFERASE-DNA complex
A
LYS
159
A
LYS
159
1
A
PRO
160
A
PRO
160
3.26
DPO4_SULSO
UNP
1
1
Q97W02
MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV
YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP
NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR
VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ
KILEEDERKIRRIGVRFSKFI
4RUA
PDB
2
4RUA
TCATXGAATCCTTCCCCC
4RUA
PDB
3
4RUA
GGGGGAAGGATTC
1
341
4RUA
1
341
Q97W02
A
1
1
341
401
418
4RUA
401
418
4RUA
T
2
1
18
501
513
4RUA
501
513
4RUA
P
3
1
13
5
3
3
4
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
99
A
ILE
99
A
ILE
101
A
ILE
101
A
GLU
106
A
GLU
106
A
ASP
110
A
ASP
110
A
VAL
3
A
VAL
3
A
PHE
8
A
PHE
8
A
VAL
140
A
VAL
140
A
SER
145
A
SER
145
A
ILE
163
A
ILE
163
A
VAL
165
A
VAL
165
A
ALA
42
A
ALA
42
A
ALA
46
A
ALA
46
A
VAL
28
A
VAL
28
A
VAL
32
A
VAL
32
A
VAL
72
A
VAL
72
A
PRO
75
A
PRO
75
A
SER
244
A
SER
244
A
ILE
245
A
ILE
245
A
ILE
330
A
ILE
330
A
SER
338
A
SER
338
A
ILE
248
A
ILE
248
A
SER
255
A
SER
255
A
SER
244
A
SER
244
A
ILE
245
A
ILE
245
A
ILE
330
A
ILE
330
A
SER
338
A
SER
338
A
ALA
283
A
ALA
283
A
THR
290
A
THR
290
A
ILE
295
A
ILE
295
A
THR
301
A
THR
301
BINDING SITE FOR RESIDUE DTP A 401
A
DTP
401
Software
17
BINDING SITE FOR RESIDUE CA A 402
A
CA
402
Software
5
BINDING SITE FOR RESIDUE CA A 403
A
CA
403
Software
4
BINDING SITE FOR RESIDUE CA A 404
A
CA
404
Software
5
A
ASP
7
A
ASP
7
17
1_555
A
PHE
8
A
PHE
8
17
1_555
A
TYR
10
A
TYR
10
17
1_555
A
PHE
11
A
PHE
11
17
1_555
A
TYR
12
A
TYR
12
17
1_555
A
ALA
44
A
ALA
44
17
1_555
A
THR
45
A
THR
45
17
1_555
A
TYR
48
A
TYR
48
17
1_555
A
ARG
51
A
ARG
51
17
1_555
A
ASP
105
A
ASP
105
17
1_555
A
GLU
106
A
GLU
106
17
1_555
A
LYS
159
A
LYS
159
17
1_555
A
CA
403
F
CA
17
1_555
A
CA
404
G
CA
17
1_555
A
HOH
523
H
HOH
17
1_555
T
DT
404
B
DT
4
17
1_555
T
MF7
405
B
MF7
5
17
1_555
A
ALA
181
A
ALA
181
5
1_555
A
ILE
186
A
ILE
186
5
1_555
A
HOH
521
H
HOH
5
1_555
P
HOH
2006
J
HOH
5
1_555
P
HOH
2008
J
HOH
5
1_555
A
ASP
7
A
ASP
7
4
1_555
A
PHE
8
A
PHE
8
4
1_555
A
ASP
105
A
ASP
105
4
1_555
A
DTP
401
D
DTP
4
1_555
A
ASP
105
A
ASP
105
5
1_555
A
GLU
106
A
GLU
106
5
1_555
A
DTP
401
D
DTP
5
1_555
A
HOH
523
H
HOH
5
1_555
P
DC
513
C
DC
13
5
1_555
18
P 21 21 2