0.030675
0.000000
0.010796
0.000000
0.015954
0.000000
0.000000
0.000000
0.029604
0.00000
0.00000
0.00000
Luo, F.
Fong, Y.H.
Jiang, L.W.
Wong, K.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
109.39
90.00
32.600
62.680
35.810
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
I -1
126.904
IODIDE ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
I
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Plant Cell
PLCEEW
2109
1532-298X
26
3693
3708
10.1105/tpc.114.129940
25271241
How vacuolar sorting receptor proteins interact with their cargo proteins: crystal structures of apo and cargo-bound forms of the protease-associated domain from an Arabidopsis vacuolar sorting receptor.
2014
10.2210/pdb4tjv/pdb
pdb_00004tjv
93
1
IMAGE PLATE
2011-08-28
RIGAKU RAXIS IV++
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU FR-E+ SUPERBRIGHT
17831.242
Vacuolar-sorting receptor 1
UNP residues 20-182
1
man
polymer
126.904
IODIDE ION
6
syn
non-polymer
18.015
water
137
nat
water
AtVSR1,BP80-like protein b,AtBP80b,Epidermal growth factor receptor-like protein 1,AtELP1,Spot 3 protein
no
no
GSRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGD
CYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTE
SVPHP
GSRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGD
CYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTE
SVPHP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mouse-ear cress
sample
1
165
VSR1, BP80B, ELP, ELP1, At3g52850, F8J2.20
3702
Arabidopsis thaliana
562
Escherichia coli
Biological sequence
1
1.94
36.45
VAPOR DIFFUSION, HANGING DROP
10% glycerol, 0.1 M MES pH 6.0, 30% PEG 600, 5% (w/v) PEG 1000.
289
citation
entity_src_gen
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
pdbx_validate_close_contact
software
chem_comp_atom
chem_comp_bond
database_2
refine_hist
repository
Initial release
Advisory
Database references
Derived calculations
Other
Refinement description
Source and taxonomy
Data collection
Database references
Refinement description
1
0
2014-12-10
1
1
2017-11-22
1
2
2023-12-27
_citation.journal_id_CSD
_entity_src_gen.pdbx_alt_source_flag
_pdbx_database_status.pdb_format_compatible
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_oper_list.symmetry_operation
_software.classification
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Hong Kong
General Research Fund from the Research Grants Council of Hong Kong SAR
476212
N
RCSB
Y
RCSB
2014-05-25
REL
REL
IOD
IODIDE ION
HOH
water
IOD
1
2
IOD
IOD
201
A
IOD
3
2
IOD
IOD
202
A
IOD
4
2
IOD
IOD
203
A
IOD
5
2
IOD
IOD
204
A
IOD
11
2
IOD
IOD
205
A
IOD
18
2
IOD
IOD
206
A
HOH
25
3
HOH
HOH
301
A
HOH
107
3
HOH
HOH
302
A
HOH
121
3
HOH
HOH
303
A
HOH
92
3
HOH
HOH
304
A
HOH
47
3
HOH
HOH
305
A
HOH
19
3
HOH
HOH
306
A
HOH
104
3
HOH
HOH
307
A
HOH
41
3
HOH
HOH
308
A
HOH
86
3
HOH
HOH
309
A
HOH
66
3
HOH
HOH
310
A
HOH
118
3
HOH
HOH
311
A
HOH
52
3
HOH
HOH
312
A
HOH
55
3
HOH
HOH
313
A
HOH
31
3
HOH
HOH
314
A
HOH
49
3
HOH
HOH
315
A
HOH
40
3
HOH
HOH
316
A
HOH
11
3
HOH
HOH
317
A
HOH
85
3
HOH
HOH
318
A
HOH
13
3
HOH
HOH
319
A
HOH
14
3
HOH
HOH
320
A
HOH
43
3
HOH
HOH
321
A
HOH
32
3
HOH
HOH
322
A
HOH
51
3
HOH
HOH
323
A
HOH
10
3
HOH
HOH
324
A
HOH
12
3
HOH
HOH
325
A
HOH
21
3
HOH
HOH
326
A
HOH
105
3
HOH
HOH
327
A
HOH
78
3
HOH
HOH
328
A
HOH
128
3
HOH
HOH
329
A
HOH
84
3
HOH
HOH
330
A
HOH
58
3
HOH
HOH
331
A
HOH
97
3
HOH
HOH
332
A
HOH
59
3
HOH
HOH
333
A
HOH
70
3
HOH
HOH
334
A
HOH
87
3
HOH
HOH
335
A
HOH
23
3
HOH
HOH
336
A
HOH
33
3
HOH
HOH
337
A
HOH
39
3
HOH
HOH
338
A
HOH
42
3
HOH
HOH
339
A
HOH
69
3
HOH
HOH
340
A
HOH
101
3
HOH
HOH
341
A
HOH
50
3
HOH
HOH
342
A
HOH
116
3
HOH
HOH
343
A
HOH
60
3
HOH
HOH
344
A
HOH
89
3
HOH
HOH
345
A
HOH
68
3
HOH
HOH
346
A
HOH
91
3
HOH
HOH
347
A
HOH
96
3
HOH
HOH
348
A
HOH
34
3
HOH
HOH
349
A
HOH
130
3
HOH
HOH
350
A
HOH
61
3
HOH
HOH
351
A
HOH
120
3
HOH
HOH
352
A
HOH
126
3
HOH
HOH
353
A
HOH
100
3
HOH
HOH
354
A
HOH
134
3
HOH
HOH
355
A
HOH
90
3
HOH
HOH
356
A
HOH
62
3
HOH
HOH
357
A
HOH
72
3
HOH
HOH
358
A
HOH
129
3
HOH
HOH
359
A
HOH
103
3
HOH
HOH
360
A
HOH
30
3
HOH
HOH
361
A
HOH
113
3
HOH
HOH
362
A
HOH
123
3
HOH
HOH
363
A
HOH
112
3
HOH
HOH
364
A
HOH
133
3
HOH
HOH
365
A
HOH
119
3
HOH
HOH
366
A
HOH
74
3
HOH
HOH
367
A
HOH
73
3
HOH
HOH
368
A
HOH
131
3
HOH
HOH
369
A
HOH
65
3
HOH
HOH
370
A
HOH
88
3
HOH
HOH
371
A
HOH
135
3
HOH
HOH
372
A
HOH
122
3
HOH
HOH
373
A
HOH
1
3
HOH
HOH
374
A
HOH
2
3
HOH
HOH
375
A
HOH
3
3
HOH
HOH
376
A
HOH
4
3
HOH
HOH
377
A
HOH
5
3
HOH
HOH
378
A
HOH
6
3
HOH
HOH
379
A
HOH
7
3
HOH
HOH
380
A
HOH
8
3
HOH
HOH
381
A
HOH
9
3
HOH
HOH
382
A
HOH
15
3
HOH
HOH
383
A
HOH
16
3
HOH
HOH
384
A
HOH
17
3
HOH
HOH
385
A
HOH
18
3
HOH
HOH
386
A
HOH
20
3
HOH
HOH
387
A
HOH
22
3
HOH
HOH
388
A
HOH
24
3
HOH
HOH
389
A
HOH
26
3
HOH
HOH
390
A
HOH
27
3
HOH
HOH
391
A
HOH
28
3
HOH
HOH
392
A
HOH
29
3
HOH
HOH
393
A
HOH
35
3
HOH
HOH
394
A
HOH
36
3
HOH
HOH
395
A
HOH
37
3
HOH
HOH
396
A
HOH
38
3
HOH
HOH
397
A
HOH
44
3
HOH
HOH
398
A
HOH
45
3
HOH
HOH
399
A
HOH
46
3
HOH
HOH
400
A
HOH
48
3
HOH
HOH
401
A
HOH
53
3
HOH
HOH
402
A
HOH
54
3
HOH
HOH
403
A
HOH
56
3
HOH
HOH
404
A
HOH
57
3
HOH
HOH
405
A
HOH
63
3
HOH
HOH
406
A
HOH
64
3
HOH
HOH
407
A
HOH
67
3
HOH
HOH
408
A
HOH
71
3
HOH
HOH
409
A
HOH
75
3
HOH
HOH
410
A
HOH
76
3
HOH
HOH
411
A
HOH
77
3
HOH
HOH
412
A
HOH
79
3
HOH
HOH
413
A
HOH
80
3
HOH
HOH
414
A
HOH
81
3
HOH
HOH
415
A
HOH
82
3
HOH
HOH
416
A
HOH
83
3
HOH
HOH
417
A
HOH
93
3
HOH
HOH
418
A
HOH
94
3
HOH
HOH
419
A
HOH
95
3
HOH
HOH
420
A
HOH
98
3
HOH
HOH
421
A
HOH
99
3
HOH
HOH
422
A
HOH
102
3
HOH
HOH
423
A
HOH
106
3
HOH
HOH
424
A
HOH
108
3
HOH
HOH
425
A
HOH
109
3
HOH
HOH
426
A
HOH
110
3
HOH
HOH
427
A
HOH
111
3
HOH
HOH
428
A
HOH
114
3
HOH
HOH
429
A
HOH
115
3
HOH
HOH
430
A
HOH
117
3
HOH
HOH
431
A
HOH
124
3
HOH
HOH
432
A
HOH
125
3
HOH
HOH
433
A
HOH
127
3
HOH
HOH
434
A
HOH
132
3
HOH
HOH
435
A
HOH
136
3
HOH
HOH
436
A
HOH
137
3
HOH
HOH
437
A
GLY
18
n
1
GLY
18
A
SER
19
n
2
SER
19
A
ARG
20
n
3
ARG
20
A
PHE
21
n
4
PHE
21
A
VAL
22
n
5
VAL
22
A
VAL
23
n
6
VAL
23
A
GLU
24
n
7
GLU
24
A
LYS
25
n
8
LYS
25
A
ASN
26
n
9
ASN
26
A
ASN
27
n
10
ASN
27
A
LEU
28
n
11
LEU
28
A
LYS
29
n
12
LYS
29
A
VAL
30
n
13
VAL
30
A
THR
31
n
14
THR
31
A
SER
32
n
15
SER
32
A
PRO
33
n
16
PRO
33
A
ASP
34
n
17
ASP
34
A
SER
35
n
18
SER
35
A
ILE
36
n
19
ILE
36
A
LYS
37
n
20
LYS
37
A
GLY
38
n
21
GLY
38
A
ILE
39
n
22
ILE
39
A
TYR
40
n
23
TYR
40
A
GLU
41
n
24
GLU
41
A
CYS
42
n
25
CYS
42
A
ALA
43
n
26
ALA
43
A
ILE
44
n
27
ILE
44
A
GLY
45
n
28
GLY
45
A
ASN
46
n
29
ASN
46
A
PHE
47
n
30
PHE
47
A
GLY
48
n
31
GLY
48
A
VAL
49
n
32
VAL
49
A
PRO
50
n
33
PRO
50
A
GLN
51
n
34
GLN
51
A
TYR
52
n
35
TYR
52
A
GLY
53
n
36
GLY
53
A
GLY
54
n
37
GLY
54
A
THR
55
n
38
THR
55
A
LEU
56
n
39
LEU
56
A
VAL
57
n
40
VAL
57
A
GLY
58
n
41
GLY
58
A
THR
59
n
42
THR
59
A
VAL
60
n
43
VAL
60
A
VAL
61
n
44
VAL
61
A
TYR
62
n
45
TYR
62
A
PRO
63
n
46
PRO
63
A
LYS
64
n
47
LYS
64
A
SER
65
n
48
SER
65
A
ASN
66
n
49
ASN
66
A
GLN
67
n
50
GLN
67
A
LYS
68
n
51
LYS
68
A
ALA
69
n
52
ALA
69
A
CYS
70
n
53
CYS
70
A
LYS
71
n
54
LYS
71
A
SER
72
n
55
SER
72
A
TYR
73
n
56
TYR
73
A
SER
74
n
57
SER
74
A
ASP
75
n
58
ASP
75
A
PHE
76
n
59
PHE
76
A
ASP
77
n
60
ASP
77
A
ILE
78
n
61
ILE
78
A
SER
79
n
62
SER
79
A
PHE
80
n
63
PHE
80
A
LYS
81
n
64
LYS
81
A
SER
82
n
65
SER
82
A
LYS
83
n
66
LYS
83
A
PRO
84
n
67
PRO
84
A
GLY
85
n
68
GLY
85
A
ARG
86
n
69
ARG
86
A
LEU
87
n
70
LEU
87
A
PRO
88
n
71
PRO
88
A
THR
89
n
72
THR
89
A
PHE
90
n
73
PHE
90
A
VAL
91
n
74
VAL
91
A
LEU
92
n
75
LEU
92
A
ILE
93
n
76
ILE
93
A
ASP
94
n
77
ASP
94
A
ARG
95
n
78
ARG
95
A
GLY
96
n
79
GLY
96
A
ASP
97
n
80
ASP
97
A
CYS
98
n
81
CYS
98
A
TYR
99
n
82
TYR
99
A
PHE
100
n
83
PHE
100
A
THR
101
n
84
THR
101
A
LEU
102
n
85
LEU
102
A
LYS
103
n
86
LYS
103
A
ALA
104
n
87
ALA
104
A
TRP
105
n
88
TRP
105
A
ILE
106
n
89
ILE
106
A
ALA
107
n
90
ALA
107
A
GLN
108
n
91
GLN
108
A
GLN
109
n
92
GLN
109
A
ALA
110
n
93
ALA
110
A
GLY
111
n
94
GLY
111
A
ALA
112
n
95
ALA
112
A
ALA
113
n
96
ALA
113
A
ALA
114
n
97
ALA
114
A
ILE
115
n
98
ILE
115
A
LEU
116
n
99
LEU
116
A
VAL
117
n
100
VAL
117
A
ALA
118
n
101
ALA
118
A
ASP
119
n
102
ASP
119
A
SER
120
n
103
SER
120
A
LYS
121
n
104
LYS
121
A
ALA
122
n
105
ALA
122
A
GLU
123
n
106
GLU
123
A
PRO
124
n
107
PRO
124
A
LEU
125
n
108
LEU
125
A
ILE
126
n
109
ILE
126
A
THR
127
n
110
THR
127
A
MET
128
n
111
MET
128
A
ASP
129
n
112
ASP
129
A
THR
130
n
113
THR
130
A
PRO
131
n
114
PRO
131
A
GLU
132
n
115
GLU
132
A
GLU
133
n
116
GLU
133
A
ASP
134
n
117
ASP
134
A
LYS
135
n
118
LYS
135
A
SER
136
n
119
SER
136
A
ASP
137
n
120
ASP
137
A
ALA
138
n
121
ALA
138
A
ASP
139
n
122
ASP
139
A
TYR
140
n
123
TYR
140
A
LEU
141
n
124
LEU
141
A
GLN
142
n
125
GLN
142
A
ASN
143
n
126
ASN
143
A
ILE
144
n
127
ILE
144
A
THR
145
n
128
THR
145
A
ILE
146
n
129
ILE
146
A
PRO
147
n
130
PRO
147
A
SER
148
n
131
SER
148
A
ALA
149
n
132
ALA
149
A
LEU
150
n
133
LEU
150
A
ILE
151
n
134
ILE
151
A
THR
152
n
135
THR
152
A
LYS
153
n
136
LYS
153
A
THR
154
n
137
THR
154
A
LEU
155
n
138
LEU
155
A
GLY
156
n
139
GLY
156
A
ASP
157
n
140
ASP
157
A
SER
158
n
141
SER
158
A
ILE
159
n
142
ILE
159
A
LYS
160
n
143
LYS
160
A
SER
161
n
144
SER
161
A
ALA
162
n
145
ALA
162
A
LEU
163
n
146
LEU
163
A
SER
164
n
147
SER
164
A
GLY
165
n
148
GLY
165
A
GLY
166
n
149
GLY
166
A
ASP
167
n
150
ASP
167
A
MET
168
n
151
MET
168
A
VAL
169
n
152
VAL
169
A
ASN
170
n
153
ASN
170
A
MET
171
n
154
MET
171
A
LYS
172
n
155
LYS
172
A
LEU
173
n
156
LEU
173
A
ASP
174
n
157
ASP
174
A
TRP
175
n
158
TRP
175
A
THR
176
n
159
THR
176
A
GLU
177
n
160
GLU
177
A
SER
178
n
161
SER
178
A
VAL
179
n
162
VAL
179
A
PRO
180
n
163
PRO
180
A
HIS
181
n
164
HIS
181
A
PRO
182
n
165
PRO
182
A
author_and_software_defined_assembly
PISA
1
monomeric
780
-2
8290
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
28
A
N
LEU
11
A
O
TYR
40
A
O
TYR
23
A
N
GLY
45
A
N
GLY
28
A
O
SER
148
A
O
SER
131
A
O
ALA
149
A
O
ALA
132
A
N
VAL
117
A
N
VAL
100
A
O
LEU
116
A
O
LEU
99
A
N
ILE
93
A
N
ILE
76
A
O
PHE
90
A
O
PHE
73
A
N
THR
59
A
N
THR
42
A
N
LEU
56
A
N
LEU
39
A
O
LEU
173
A
O
LEU
156
A
O
LYS
172
A
O
LYS
155
A
N
LYS
29
A
N
LYS
12
1
A
CG
LYS
83
A
CG
LYS
66
1
Y
1
A
CD
LYS
83
A
CD
LYS
66
1
Y
1
A
CE
LYS
83
A
CE
LYS
66
1
Y
1
A
NZ
LYS
83
A
NZ
LYS
66
1
Y
1
A
CG
ARG
86
A
CG
ARG
69
1
Y
1
A
CD
ARG
86
A
CD
ARG
69
1
Y
1
A
NE
ARG
86
A
NE
ARG
69
1
Y
1
A
CZ
ARG
86
A
CZ
ARG
69
1
Y
1
A
NH1
ARG
86
A
NH1
ARG
69
1
Y
1
A
NH2
ARG
86
A
NH2
ARG
69
1
Y
1
A
SER
32
A
-174.41
143.40
1
A
SER
32
B
-174.45
146.84
1
A
PHE
47
170.28
162.85
1
A
ASP
97
73.18
-20.78
0.1902
0.1662
0.1675
1.651
33.78
798
15966
5.01
97.65
0.13
1
FREE R-VALUE
1.84
SAD
18.99
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
1.651
33.78
137
1385
6
0
1242
0.007
1285
1.352
1752
11.560
470
0.061
202
0.008
227
0.2479
0.1980
1.7045
130
2645
95.00
0.2270
0.1809
1.7654
153
2630
96.00
0.2022
0.1742
1.8360
135
2648
96.00
0.2441
0.1638
1.9196
157
2683
97.00
0.2080
0.1559
2.0208
146
2701
97.00
0.1734
0.1553
2.1474
155
2711
98.00
0.1842
0.1630
2.3131
125
2742
98.00
0.2148
0.1730
2.5459
118
2758
99.00
0.1913
0.1824
2.9141
140
2739
99.00
0.1863
0.1643
3.6707
147
2781
100.00
0.1603
0.1564
33.7859
164
2755
100.00
1.65
33.78
4TJV
15984
0.026
1
74.0
15.5
97.7
0.148
1.65
1.69
19.1
15.2
94.9
refinement
PHENIX
(phenix.refine: 1.8.4_1496)
data scaling
XDS
Crystal structure of protease-associated domain of Arabidopsis vacuolar sorting receptor 1
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
A
PRO
33
A
PRO
16
HELX_P
A
LYS
37
A
LYS
20
5
AA1
5
A
SER
72
A
SER
55
HELX_P
A
ASP
77
A
ASP
60
5
AA2
6
A
TYR
99
A
TYR
82
HELX_P
A
ALA
110
A
ALA
93
1
AA3
12
A
PRO
124
A
PRO
107
HELX_P
A
ASP
129
A
ASP
112
1
AA4
6
A
ASP
137
A
ASP
120
HELX_P
A
GLN
142
A
GLN
125
1
AA5
6
A
THR
152
A
THR
135
HELX_P
A
GLY
165
A
GLY
148
1
AA6
14
disulf
2.042
A
CYS
70
A
SG
CYS
53
1_555
A
CYS
98
A
SG
CYS
81
1_555
PROTEIN TRANSPORT
Ligand-binding domain, Beta barrel, Apo form, PROTEIN TRANSPORT
A
SER
32
A
SER
15
1
A
PRO
33
A
PRO
16
0.96
A
SER
32
A
SER
15
1
A
PRO
33
A
PRO
16
-0.46
VSR1_ARATH
UNP
1
20
P93026
RFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCY
FTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESV
PHP
20
182
4TJV
20
182
P93026
A
1
3
165
1
expression tag
GLY
18
4TJV
A
P93026
UNP
1
1
expression tag
SER
19
4TJV
A
P93026
UNP
2
8
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
PHE
21
A
PHE
4
A
SER
32
A
SER
15
A
GLY
38
A
GLY
21
A
GLY
45
A
GLY
28
A
SER
148
A
SER
131
A
ILE
151
A
ILE
134
A
ALA
114
A
ALA
97
A
ALA
118
A
ALA
101
A
THR
89
A
THR
72
A
ASP
94
A
ASP
77
A
THR
55
A
THR
38
A
VAL
61
A
VAL
44
A
ASN
170
A
ASN
153
A
ASP
174
A
ASP
157
A
PHE
21
A
PHE
4
A
SER
32
A
SER
15
binding site for residue IOD A 201
A
IOD
201
Software
1
binding site for residue IOD A 202
A
IOD
202
Software
3
binding site for residue IOD A 203
A
IOD
203
Software
4
binding site for residue IOD A 204
A
IOD
204
Software
2
binding site for residue IOD A 205
A
IOD
205
Software
1
binding site for residue IOD A 206
A
IOD
206
Software
2
A
LYS
64
A
LYS
47
1
1_555
A
ASN
26
A
ASN
9
3
1_555
A
PRO
180
A
PRO
163
3
1_555
A
HIS
181
A
HIS
164
3
1_555
A
GLU
41
A
GLU
24
4
1_555
A
THR
152
A
THR
135
4
1_555
A
HOH
415
H
HOH
4
1_555
A
HOH
422
H
HOH
4
1_555
A
GLN
142
A
GLN
125
2
1_656
A
HOH
372
H
HOH
2
1_656
A
GLU
177
A
GLU
160
1
1_555
A
SER
19
A
SER
2
2
1_556
A
HOH
344
H
HOH
2
1_555
4
P 1 21 1