0.012793 0.000000 0.000000 0.000000 0.012793 0.000000 0.000000 0.000000 0.012112 0.00000 0.00000 0.00000 Johnson, R. Taylor, A.B. Hart, P.J. Ivanov, D.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 78.170 78.170 82.562 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N S N 305 N O N 306 N O N 307 N O N 308 N O N 309 N N N 310 S C N 311 N C N 312 N O N 313 R C N 314 N O N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N N Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C N 382 N C N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing US Cell Rep 2211-1247 12 788 797 10.1016/j.celrep.2015.06.072 26212332 RING Dimerization Links Higher-Order Assembly of TRIM5 alpha to Synthesis of K63-Linked Polyubiquitin. 2015 10.2210/pdb4tkp/pdb pdb_00004tkp 100 1 PIXEL 2013-07-02 PSI PILATUS 6M SINGLE WAVELENGTH M x-ray 1 1.2823 1.0 24-ID-C APS 1.2823 SYNCHROTRON APS BEAMLINE 24-ID-C 17184.729 Ubiquitin-conjugating enzyme E2 N 6.3.2.19 1 man polymer 10361.955 Tripartite motif-containing protein 5 6.3.2.- UNP residues 2-92 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 65.409 ZINC ION 2 syn non-polymer 18.015 water 49 nat water Bendless-like ubiquitin-conjugating enzyme,Ubc13,UbcH13,Ubiquitin carrier protein N,Ubiquitin-protein ligase N TRIM5alpha no no GTAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN VDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI GTAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN VDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI A polypeptide(L) no no GSASGILLNVKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERSCPVCRISYQPENIQPNRHVANIVE KLREVKLSPEEGQ GSASGILLNVKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERSCPVCRISYQPENIQPNRHVANIVE KLREVKLSPEEGQ B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 153 UBE2N, BLU 9606 Homo sapiens 511693 Escherichia coli BL21 Rosetta 2 plasmid Biological sequence pET30a, modified Rhesus macaque sample 1 93 TRIM5 9544 Macaca mulatta 562 Escherichia coli Biological sequence 2.29 46.27 VAPOR DIFFUSION, SITTING DROP 5.5 2.0 M ammonium sulfate, 0.1 M bis-tris 295 entity_src_gen pdbx_audit_support pdbx_struct_oper_list citation citation_author chem_comp_atom chem_comp_bond database_2 repository Initial release Author supporting evidence Derived calculations Source and taxonomy Database references Data collection Database references 1 0 2015-07-22 1 1 2017-09-27 1 2 2020-03-04 1 3 2023-12-27 _entity_src_gen.pdbx_alt_source_flag _pdbx_struct_oper_list.symmetry_operation _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _database_2.pdbx_DOI _database_2.pdbx_database_accession N RCSB Y RCSB 2014-05-27 REL REL SO4 SULFATE ION ZN ZINC ION HOH water SO4 201 3 SO4 SO4 201 A ZN 101 4 ZN ZN 101 B ZN 102 4 ZN ZN 102 B HOH 32 5 HOH HOH 301 A HOH 17 5 HOH HOH 302 A HOH 23 5 HOH HOH 303 A HOH 15 5 HOH HOH 304 A HOH 25 5 HOH HOH 305 A HOH 2 5 HOH HOH 306 A HOH 42 5 HOH HOH 307 A HOH 10 5 HOH HOH 308 A HOH 48 5 HOH HOH 309 A HOH 43 5 HOH HOH 310 A HOH 22 5 HOH HOH 311 A HOH 47 5 HOH HOH 312 A HOH 21 5 HOH HOH 313 A HOH 38 5 HOH HOH 314 A HOH 1 5 HOH HOH 315 A HOH 3 5 HOH HOH 316 A HOH 4 5 HOH HOH 317 A HOH 5 5 HOH HOH 318 A HOH 6 5 HOH HOH 319 A HOH 7 5 HOH HOH 320 A HOH 8 5 HOH HOH 321 A HOH 11 5 HOH HOH 322 A HOH 12 5 HOH HOH 323 A HOH 13 5 HOH HOH 324 A HOH 14 5 HOH HOH 325 A HOH 16 5 HOH HOH 326 A HOH 18 5 HOH HOH 327 A HOH 19 5 HOH HOH 328 A HOH 20 5 HOH HOH 329 A HOH 24 5 HOH HOH 330 A HOH 26 5 HOH HOH 331 A HOH 27 5 HOH HOH 332 A HOH 28 5 HOH HOH 333 A HOH 29 5 HOH HOH 334 A HOH 30 5 HOH HOH 335 A HOH 33 5 HOH HOH 336 A HOH 34 5 HOH HOH 337 A HOH 35 5 HOH HOH 338 A HOH 36 5 HOH HOH 339 A HOH 37 5 HOH HOH 340 A HOH 39 5 HOH HOH 341 A HOH 40 5 HOH HOH 342 A HOH 44 5 HOH HOH 343 A HOH 45 5 HOH HOH 344 A HOH 46 5 HOH HOH 345 A HOH 49 5 HOH HOH 346 A HOH 31 5 HOH HOH 201 B HOH 9 5 HOH HOH 202 B HOH 41 5 HOH HOH 203 B n 1 0 A n 2 1 A n 3 2 A n 4 3 A LEU 4 n 5 LEU 4 A PRO 5 n 6 PRO 5 A ARG 6 n 7 ARG 6 A ARG 7 n 8 ARG 7 A ILE 8 n 9 ILE 8 A ILE 9 n 10 ILE 9 A LYS 10 n 11 LYS 10 A GLU 11 n 12 GLU 11 A THR 12 n 13 THR 12 A GLN 13 n 14 GLN 13 A ARG 14 n 15 ARG 14 A LEU 15 n 16 LEU 15 A LEU 16 n 17 LEU 16 A ALA 17 n 18 ALA 17 A GLU 18 n 19 GLU 18 A PRO 19 n 20 PRO 19 A VAL 20 n 21 VAL 20 A PRO 21 n 22 PRO 21 A GLY 22 n 23 GLY 22 A ILE 23 n 24 ILE 23 A LYS 24 n 25 LYS 24 A ALA 25 n 26 ALA 25 A GLU 26 n 27 GLU 26 A PRO 27 n 28 PRO 27 A ASP 28 n 29 ASP 28 A GLU 29 n 30 GLU 29 A SER 30 n 31 SER 30 A ASN 31 n 32 ASN 31 A ALA 32 n 33 ALA 32 A ARG 33 n 34 ARG 33 A TYR 34 n 35 TYR 34 A PHE 35 n 36 PHE 35 A HIS 36 n 37 HIS 36 A VAL 37 n 38 VAL 37 A VAL 38 n 39 VAL 38 A ILE 39 n 40 ILE 39 A ALA 40 n 41 ALA 40 A GLY 41 n 42 GLY 41 A PRO 42 n 43 PRO 42 A GLN 43 n 44 GLN 43 A ASP 44 n 45 ASP 44 A SER 45 n 46 SER 45 A PRO 46 n 47 PRO 46 A PHE 47 n 48 PHE 47 A GLU 48 n 49 GLU 48 A GLY 49 n 50 GLY 49 A GLY 50 n 51 GLY 50 A THR 51 n 52 THR 51 A PHE 52 n 53 PHE 52 A LYS 53 n 54 LYS 53 A LEU 54 n 55 LEU 54 A GLU 55 n 56 GLU 55 A LEU 56 n 57 LEU 56 A PHE 57 n 58 PHE 57 A LEU 58 n 59 LEU 58 A PRO 59 n 60 PRO 59 A GLU 60 n 61 GLU 60 A GLU 61 n 62 GLU 61 A TYR 62 n 63 TYR 62 A PRO 63 n 64 PRO 63 A MET 64 n 65 MET 64 A ALA 65 n 66 ALA 65 A ALA 66 n 67 ALA 66 A PRO 67 n 68 PRO 67 A LYS 68 n 69 LYS 68 A VAL 69 n 70 VAL 69 A ARG 70 n 71 ARG 70 A PHE 71 n 72 PHE 71 A MET 72 n 73 MET 72 A THR 73 n 74 THR 73 A LYS 74 n 75 LYS 74 A ILE 75 n 76 ILE 75 A TYR 76 n 77 TYR 76 A HIS 77 n 78 HIS 77 A PRO 78 n 79 PRO 78 A ASN 79 n 80 ASN 79 A VAL 80 n 81 VAL 80 A ASP 81 n 82 ASP 81 A LYS 82 n 83 LYS 82 A LEU 83 n 84 LEU 83 A GLY 84 n 85 GLY 84 A ARG 85 n 86 ARG 85 A ILE 86 n 87 ILE 86 A CYS 87 n 88 CYS 87 A LEU 88 n 89 LEU 88 A ASP 89 n 90 ASP 89 A ILE 90 n 91 ILE 90 A LEU 91 n 92 LEU 91 A LYS 92 n 93 LYS 92 A ASP 93 n 94 ASP 93 A LYS 94 n 95 LYS 94 A TRP 95 n 96 TRP 95 A SER 96 n 97 SER 96 A PRO 97 n 98 PRO 97 A ALA 98 n 99 ALA 98 A LEU 99 n 100 LEU 99 A GLN 100 n 101 GLN 100 A ILE 101 n 102 ILE 101 A ARG 102 n 103 ARG 102 A THR 103 n 104 THR 103 A VAL 104 n 105 VAL 104 A LEU 105 n 106 LEU 105 A LEU 106 n 107 LEU 106 A SER 107 n 108 SER 107 A ILE 108 n 109 ILE 108 A GLN 109 n 110 GLN 109 A ALA 110 n 111 ALA 110 A LEU 111 n 112 LEU 111 A LEU 112 n 113 LEU 112 A SER 113 n 114 SER 113 A ALA 114 n 115 ALA 114 A PRO 115 n 116 PRO 115 A ASN 116 n 117 ASN 116 A PRO 117 n 118 PRO 117 A ASP 118 n 119 ASP 118 A n 120 119 A n 121 120 A n 122 121 A n 123 122 A ASN 123 n 124 ASN 123 A ASP 124 n 125 ASP 124 A VAL 125 n 126 VAL 125 A ALA 126 n 127 ALA 126 A GLU 127 n 128 GLU 127 A GLN 128 n 129 GLN 128 A TRP 129 n 130 TRP 129 A LYS 130 n 131 LYS 130 A THR 131 n 132 THR 131 A ASN 132 n 133 ASN 132 A GLU 133 n 134 GLU 133 A ALA 134 n 135 ALA 134 A GLN 135 n 136 GLN 135 A ALA 136 n 137 ALA 136 A ILE 137 n 138 ILE 137 A GLU 138 n 139 GLU 138 A THR 139 n 140 THR 139 A ALA 140 n 141 ALA 140 A ARG 141 n 142 ARG 141 A ALA 142 n 143 ALA 142 A TRP 143 n 144 TRP 143 A THR 144 n 145 THR 144 A ARG 145 n 146 ARG 145 A LEU 146 n 147 LEU 146 A TYR 147 n 148 TYR 147 A ALA 148 n 149 ALA 148 A MET 149 n 150 MET 149 A ASN 150 n 151 ASN 150 A ASN 151 n 152 ASN 151 A ILE 152 n 153 ILE 152 A n 1 0 B n 2 1 B n 3 2 B n 4 3 B n 5 4 B ILE 5 n 6 ILE 5 B LEU 6 n 7 LEU 6 B LEU 7 n 8 LEU 7 B ASN 8 n 9 ASN 8 B VAL 9 n 10 VAL 9 B LYS 10 n 11 LYS 10 B GLU 11 n 12 GLU 11 B GLU 12 n 13 GLU 12 B VAL 13 n 14 VAL 13 B THR 14 n 15 THR 14 B CYS 15 n 16 CYS 15 B PRO 16 n 17 PRO 16 B ILE 17 n 18 ILE 17 B CYS 18 n 19 CYS 18 B LEU 19 n 20 LEU 19 B GLU 20 n 21 GLU 20 B LEU 21 n 22 LEU 21 B LEU 22 n 23 LEU 22 B THR 23 n 24 THR 23 B GLU 24 n 25 GLU 24 B PRO 25 n 26 PRO 25 B LEU 26 n 27 LEU 26 B SER 27 n 28 SER 27 B LEU 28 n 29 LEU 28 B HIS 29 n 30 HIS 29 B CYS 30 n 31 CYS 30 B GLY 31 n 32 GLY 31 B HIS 32 n 33 HIS 32 B SER 33 n 34 SER 33 B PHE 34 n 35 PHE 34 B CYS 35 n 36 CYS 35 B GLN 36 n 37 GLN 36 B ALA 37 n 38 ALA 37 B CYS 38 n 39 CYS 38 B ILE 39 n 40 ILE 39 B n 41 40 B n 42 41 B n 43 42 B n 44 43 B n 45 44 B n 46 45 B n 47 46 B n 48 47 B n 49 48 B n 50 49 B n 51 50 B n 52 51 B n 53 52 B n 54 53 B n 55 54 B SER 55 n 56 SER 55 B CYS 56 n 57 CYS 56 B PRO 57 n 58 PRO 57 B VAL 58 n 59 VAL 58 B CYS 59 n 60 CYS 59 B ARG 60 n 61 ARG 60 B ILE 61 n 62 ILE 61 B SER 62 n 63 SER 62 B TYR 63 n 64 TYR 63 B GLN 64 n 65 GLN 64 B PRO 65 n 66 PRO 65 B GLU 66 n 67 GLU 66 B ASN 67 n 68 ASN 67 B ILE 68 n 69 ILE 68 B GLN 69 n 70 GLN 69 B PRO 70 n 71 PRO 70 B ASN 71 n 72 ASN 71 B ARG 72 n 73 ARG 72 B HIS 73 n 74 HIS 73 B VAL 74 n 75 VAL 74 B ALA 75 n 76 ALA 75 B ASN 76 n 77 ASN 76 B ILE 77 n 78 ILE 77 B VAL 78 n 79 VAL 78 B GLU 79 n 80 GLU 79 B LYS 80 n 81 LYS 80 B LEU 81 n 82 LEU 81 B ARG 82 n 83 ARG 82 B n 84 83 B n 85 84 B n 86 85 B n 87 86 B n 88 87 B n 89 88 B n 90 89 B n 91 90 B n 92 91 B n 93 92 B author_and_software_defined_assembly PISA 2 dimeric 1000 -9 12340 B CYS 15 B SG CYS 16 1_555 B ZN 102 E ZN ZN 1_555 B CYS 18 B SG CYS 19 1_555 111.6 B CYS 15 B SG CYS 16 1_555 B ZN 102 E ZN ZN 1_555 B CYS 35 B SG CYS 36 1_555 92.9 B CYS 18 B SG CYS 19 1_555 B ZN 102 E ZN ZN 1_555 B CYS 35 B SG CYS 36 1_555 99.2 B CYS 15 B SG CYS 16 1_555 B ZN 102 E ZN ZN 1_555 B CYS 38 B SG CYS 39 1_555 103.1 B CYS 18 B SG CYS 19 1_555 B ZN 102 E ZN ZN 1_555 B CYS 38 B SG CYS 39 1_555 131.2 B CYS 35 B SG CYS 36 1_555 B ZN 102 E ZN ZN 1_555 B CYS 38 B SG CYS 39 1_555 112.4 B CYS 30 B SG CYS 31 1_555 B ZN 101 D ZN ZN 1_555 B HIS 32 B ND1 HIS 33 1_555 107.4 B CYS 30 B SG CYS 31 1_555 B ZN 101 D ZN ZN 1_555 B CYS 56 B SG CYS 57 1_555 112.2 B HIS 32 B ND1 HIS 33 1_555 B ZN 101 D ZN ZN 1_555 B CYS 56 B SG CYS 57 1_555 110.4 B CYS 30 B SG CYS 31 1_555 B ZN 101 D ZN ZN 1_555 B CYS 59 B SG CYS 60 1_555 101.0 B HIS 32 B ND1 HIS 33 1_555 B ZN 101 D ZN ZN 1_555 B CYS 59 B SG CYS 60 1_555 117.8 B CYS 56 B SG CYS 57 1_555 B ZN 101 D ZN ZN 1_555 B CYS 59 B SG CYS 60 1_555 107.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 26 A N GLU 27 A O HIS 36 A O HIS 37 A N PHE 35 A N PHE 36 A O LEU 56 A O LEU 57 A N PHE 57 A N PHE 58 A O LYS 68 A O LYS 69 B O PHE 34 B O PHE 35 B N LEU 26 B N LEU 27 B N SER 27 B N SER 28 B O GLN 69 B O GLN 70 1 A GLY 0 A GLY 1 1 Y 1 A THR 1 A THR 2 1 Y 1 A ALA 2 A ALA 3 1 Y 1 A GLY 3 A GLY 4 1 Y 1 A ASP 119 A ASP 120 1 Y 1 A PRO 120 A PRO 121 1 Y 1 A LEU 121 A LEU 122 1 Y 1 A ALA 122 A ALA 123 1 Y 1 B GLY 0 B GLY 1 1 Y 1 B SER 1 B SER 2 1 Y 1 B ALA 2 B ALA 3 1 Y 1 B SER 3 B SER 4 1 Y 1 B GLY 4 B GLY 5 1 Y 1 B THR 40 B THR 41 1 Y 1 B ALA 41 B ALA 42 1 Y 1 B ASN 42 B ASN 43 1 Y 1 B HIS 43 B HIS 44 1 Y 1 B LYS 44 B LYS 45 1 Y 1 B LYS 45 B LYS 46 1 Y 1 B SER 46 B SER 47 1 Y 1 B MET 47 B MET 48 1 Y 1 B LEU 48 B LEU 49 1 Y 1 B TYR 49 B TYR 50 1 Y 1 B LYS 50 B LYS 51 1 Y 1 B GLU 51 B GLU 52 1 Y 1 B GLY 52 B GLY 53 1 Y 1 B GLU 53 B GLU 54 1 Y 1 B ARG 54 B ARG 55 1 Y 1 B GLU 83 B GLU 84 1 Y 1 B VAL 84 B VAL 85 1 Y 1 B LYS 85 B LYS 86 1 Y 1 B LEU 86 B LEU 87 1 Y 1 B SER 87 B SER 88 1 Y 1 B PRO 88 B PRO 89 1 Y 1 B GLU 89 B GLU 90 1 Y 1 B GLU 90 B GLU 91 1 Y 1 B GLY 91 B GLY 92 1 Y 1 B GLN 92 B GLN 93 1 Y 1 A LYS 92 -133.65 -117.49 1 B ILE 17 -93.57 -61.75 1 B PRO 65 -61.40 41.47 1 B GLU 66 -158.77 -10.62 1 B LYS 80 -78.23 22.30 56.6 0.2553 0.2243 0.2257 2.08 45.93 778 15568 5.04 97.98 0.29 random 1 THROUGHOUT 1.34 SAD 30.93 0.90 1.11 ML FLAT BULK SOLVENT MODEL 2.08 45.93 49 1712 7 0 1656 0.002 1696 0.664 2306 16.252 647 0.047 263 0.003 298 0.3335 0.3251 2.1544 155 2751 99.00 0.3196 0.3005 2.2406 164 2633 95.00 0.3811 0.3503 2.3426 145 2595 94.00 0.2773 0.2566 2.4661 144 2775 99.00 0.3253 0.2430 2.6206 149 2759 100.00 0.3365 0.2529 2.8229 127 2803 99.00 0.3034 0.2494 3.1069 157 2759 99.00 0.2649 0.2266 3.5564 159 2756 99.00 0.2281 0.1921 4.4801 101 2766 98.00 0.2076 0.2050 45.9424 150 2724 98.00 50.9 2.08 45.93 4TKP 15907 0.036 1 23.9 7.0 99.7 0.588 2.08 2.19 2.4 1 7.3 100 refinement PHENIX (phenix.refine: 1.8.2_1309) Complex of Ubc13 with the RING domain of the TRIM5alpha retroviral restriction factor 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N A PRO 5 A PRO 6 HELX_P A GLU 18 A GLU 19 1 AA1 14 A LEU 88 A LEU 89 HELX_P A LYS 92 A LYS 93 5 AA2 5 A GLN 100 A GLN 101 HELX_P A ALA 114 A ALA 115 1 AA3 15 A ASP 124 A ASP 125 HELX_P A ASN 132 A ASN 133 1 AA4 9 A ASN 132 A ASN 133 HELX_P A ALA 148 A ALA 149 1 AA5 17 B LEU 6 B LEU 7 HELX_P B VAL 13 B VAL 14 1 AA6 8 B ALA 37 B ALA 38 HELX_P B ILE 39 B ILE 40 5 AA7 3 B ASN 71 B ASN 72 HELX_P B LYS 80 B LYS 81 1 AA8 10 metalc 2.479 B CYS 15 B SG CYS 16 1_555 B ZN 102 E ZN ZN 1_555 metalc 2.330 B CYS 18 B SG CYS 19 1_555 B ZN 102 E ZN ZN 1_555 metalc 2.356 B CYS 30 B SG CYS 31 1_555 B ZN 101 D ZN ZN 1_555 metalc 2.143 B HIS 32 B ND1 HIS 33 1_555 B ZN 101 D ZN ZN 1_555 metalc 2.755 B CYS 35 B SG CYS 36 1_555 B ZN 102 E ZN ZN 1_555 metalc 2.341 B CYS 38 B SG CYS 39 1_555 B ZN 102 E ZN ZN 1_555 metalc 2.354 B CYS 56 B SG CYS 57 1_555 B ZN 101 D ZN ZN 1_555 metalc 2.331 B CYS 59 B SG CYS 60 1_555 B ZN 101 D ZN ZN 1_555 LIGASE HIV restriction, TRIM5, Ubc13, E3 Ubiquitin ligase, RING dimerization, LIGASE A TYR 62 A TYR 63 1 A PRO 63 A PRO 64 5.52 UBE2N_HUMAN UNP 1 2 P61088 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI TRIM5_MACMU UNP 2 2 Q0PF16 ASGILLNVKEEVTCPICLELLTEPLSLHCGHSFCQACITANHKKSMLYKEGERSCPVCRISYQPENIQPNRHVANIVEKL REVKLSPEEGQ 2 152 4TKP 2 152 P61088 A 1 3 153 2 92 4TKP 2 92 Q0PF16 B 2 3 93 1 expression tag GLY 0 4TKP A P61088 UNP 1 1 expression tag THR 1 4TKP A P61088 UNP 2 2 expression tag GLY 0 4TKP B Q0PF16 UNP 1 2 expression tag SER 1 4TKP B Q0PF16 UNP 2 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 23 A ILE 24 A PRO 27 A PRO 28 A TYR 34 A TYR 35 A ALA 40 A ALA 41 A THR 51 A THR 52 A PHE 57 A PHE 58 A LYS 68 A LYS 69 A PHE 71 A PHE 72 B SER 33 B SER 34 B CYS 35 B CYS 36 B PRO 25 B PRO 26 B SER 27 B SER 28 B GLN 69 B GLN 70 B PRO 70 B PRO 71 binding site for residue SO4 A 201 A SO4 201 Software 5 binding site for residue ZN B 101 B ZN 101 Software 4 binding site for residue ZN B 102 B ZN 102 Software 4 A PHE 57 A PHE 58 5 8_665 A PRO 59 A PRO 60 5 8_665 A GLU 60 A GLU 61 5 8_665 A ARG 70 A ARG 71 5 1_555 A ARG 85 A ARG 86 5 1_555 B CYS 30 B CYS 31 4 1_555 B HIS 32 B HIS 33 4 1_555 B CYS 56 B CYS 57 4 1_555 B CYS 59 B CYS 60 4 1_555 B CYS 15 B CYS 16 4 1_555 B CYS 18 B CYS 19 4 1_555 B CYS 35 B CYS 36 4 1_555 B CYS 38 B CYS 39 4 1_555 92 P 41 21 2