0.025077
0.000000
0.000000
0.000000
0.020243
0.000000
0.000000
0.000000
0.005308
0.000000
0.000000
0.000000
Warner, K.D.
Chen, M.C.
Song, W.
Strack, R.L.
Thorn, A.
Jaffrey, S.R.
Ferre-D'Amare, A.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
39.877
49.399
188.410
C12 H10 F2 N2 O2
252.217
(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one
non-polymer
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N3 O10 P2
385.161
n
CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
RNA linking
C6 H12 O6
180.156
beta-D-fructofuranose
beta-D-fructose; D-fructose; fructose
D-saccharide, beta linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C6 H12 O6
180.156
alpha-D-glucopyranose
alpha-D-glucose; D-glucose; glucose
D-saccharide, alpha linking
H2 O
18.015
WATER
non-polymer
K 1
39.098
POTASSIUM ION
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
F
Y
2
N
C
Y
3
N
C
N
4
N
O
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
N
9
N
F
N
10
N
C
N
11
N
C
N
12
N
C
N
13
N
O
N
14
N
N
N
15
N
C
N
16
N
C
N
17
N
N
N
18
N
C
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
O
N
30
N
P
N
31
N
O
N
32
N
O
N
33
N
O
N
34
N
C
N
35
R
C
N
36
N
O
N
37
S
C
N
38
N
O
N
39
R
C
N
40
N
O
N
41
R
C
Y
42
N
N
Y
43
N
C
Y
44
N
N
Y
45
N
C
Y
46
N
C
N
47
N
N
Y
48
N
N
Y
49
N
C
Y
50
N
N
Y
51
N
C
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
O
N
67
N
P
N
68
N
O
N
69
N
O
N
70
N
O
N
71
N
C
N
72
R
C
N
73
N
O
N
74
S
C
N
75
N
O
N
76
R
C
N
77
N
O
N
78
R
C
N
79
N
N
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
C
N
84
N
N
N
85
N
C
N
86
N
C
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
S
P
N
102
N
O
N
103
N
O
N
104
N
P
N
105
N
O
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
C
N
110
R
C
N
111
N
O
N
112
R
C
N
113
N
O
N
114
R
C
N
115
N
O
N
116
R
C
N
117
N
N
N
118
N
C
N
119
N
O
N
120
N
N
N
121
N
C
N
122
N
N
N
123
N
C
N
124
N
C
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
C
N
139
R
C
N
140
S
C
N
141
S
C
N
142
R
C
N
143
N
C
N
144
N
O
N
145
N
O
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
O
N
163
N
P
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
C
N
168
R
C
N
169
N
O
N
170
S
C
N
171
N
O
N
172
R
C
N
173
N
O
N
174
R
C
Y
175
N
N
Y
176
N
C
Y
177
N
N
Y
178
N
C
N
179
N
C
N
180
N
O
N
181
N
N
N
182
N
C
N
183
N
N
N
184
N
N
Y
185
N
C
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
S
C
N
201
R
C
N
202
S
C
N
203
S
C
N
204
R
C
N
205
N
C
N
206
N
O
N
207
N
O
N
208
N
O
N
209
N
O
N
210
N
O
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
K
N
228
N
MG
N
229
N
O
N
230
N
P
N
231
N
O
N
232
N
O
N
233
N
O
N
234
N
C
N
235
R
C
N
236
N
O
N
237
S
C
N
238
N
O
N
239
R
C
N
240
N
O
N
241
R
C
N
242
N
N
N
243
N
C
N
244
N
O
N
245
N
N
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
1
N
doub
N
2
N
sing
Y
3
N
doub
Y
4
N
sing
N
5
N
sing
N
6
Z
doub
N
7
N
sing
N
8
N
sing
Y
9
N
sing
Y
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
Y
15
N
doub
Y
16
N
sing
N
17
N
doub
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
Y
54
N
sing
Y
55
N
sing
Y
56
N
doub
N
57
N
sing
Y
58
N
sing
Y
59
N
sing
Y
60
N
doub
N
61
N
sing
Y
62
N
doub
N
63
N
sing
N
64
N
sing
Y
65
N
sing
Y
66
N
doub
N
67
N
sing
Y
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
Y
192
N
sing
Y
193
N
sing
Y
194
N
doub
N
195
N
sing
Y
196
N
sing
N
197
N
sing
Y
198
N
doub
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
US
Nat.Struct.Mol.Biol.
1545-9985
21
658
663
10.1038/nsmb.2865
25026079
Structural basis for activity of highly efficient RNA mimics of green fluorescent protein.
2014
10.2210/pdb4ts2/pdb
pdb_00004ts2
100
1
PIXEL
2013-04-03
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
24-ID-C
APS
0.9792
SYNCHROTRON
APS BEAMLINE 24-ID-C
14394.598
Spinach aptamer RNA, bimolecular construct
1
syn
polymer
15220.934
Spinach aptamer RNA, bimolecular construct
1
syn
polymer
342.297
beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
1
man
branched
24.305
MAGNESIUM ION
1
syn
non-polymer
39.098
POTASSIUM ION
3
syn
non-polymer
252.217
(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one
1
syn
non-polymer
18.015
water
5
nat
water
sucrose
no
yes
GACGCGACCGAAUGAAAUGGUGAAGGACGGGUCCAGCCGGCUG(CCC)
GACGCGACCGAAUGAAAUGGUGAAGGACGGGUCCAGCCGGCUGC
X
polyribonucleotide
no
yes
GCAGCCGGCUUGUUGAGUAGAGUGUGAGCUCCGUAACUGGUCGCGU(CCC)
GCAGCCGGCUUGUUGAGUAGAGUGUGAGCUCCGUAACUGGUCGCGUC
Y
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
3.13
60.68
VAPOR DIFFUSION, HANGING DROP
20% PEG 3350, 0.5M NaCl, 0.1M succinate-K pH 7.0, 10% sucrose
298
4.322
1
19
X
1
Y
101
1.203
X_G1:CCC101_Y
1
-0.544
0.868
1.285
-0.528
1.983
1
20
X
2
Y
94
6.846
X_A2:U94_Y
2
-6.802
-0.608
0.382
0.400
2.556
1
19
X
3
Y
93
2.871
X_C3:G93_Y
3
-8.217
-0.682
0.487
0.063
1.721
1
19
X
4
Y
92
5.272
X_G4:C92_Y
4
-10.351
0.850
0.468
0.049
-1.288
1
19
X
5
Y
91
5.499
X_C5:G91_Y
5
-9.492
-0.140
0.513
0.145
-0.465
1
19
X
6
Y
90
-0.794
X_G6:C90_Y
6
-9.546
-0.165
0.371
-0.403
1.998
1
20
X
7
Y
89
-6.949
X_A7:U89_Y
7
-2.993
-0.271
0.061
-0.453
3.117
1
19
X
8
Y
88
-2.990
X_C8:G88_Y
8
-6.524
0.618
0.227
-0.674
0.206
1
19
X
9
Y
87
-3.298
X_C9:G87_Y
9
-5.654
-0.054
-0.071
-0.230
-9.243
1
20
X
12
Y
86
-4.067
X_A12:U86_Y
10
-2.263
0.368
-0.004
-0.262
-15.183
1
19
X
14
Y
85
-0.505
X_G14:C85_Y
11
-8.717
-0.309
-0.199
-0.162
4.306
1
20
X
17
Y
82
13.772
X_A17:U82_Y
12
-16.133
0.053
-0.289
0.016
4.332
5
X
18
Y
81
34.097
X_U18:G81_Y
13
-7.748
3.358
-0.543
0.403
0.934
1
19
X
19
Y
80
4.785
X_G19:C80_Y
14
-3.326
-0.686
-0.019
-0.084
2.186
1
19
X
20
Y
79
2.512
X_G20:C79_Y
15
-13.179
-0.972
0.201
-0.566
-1.865
1
16
X
21
Y
78
3.499
X_U21:U78_Y
16
-18.334
-2.397
0.683
-1.914
-24.638
1
19
X
22
Y
77
3.533
X_G22:C77_Y
17
-14.085
-0.579
-0.362
-0.036
-16.350
1
8
X
23
Y
76
-17.881
X_A23:G76_Y
18
-0.762
-0.511
-0.139
1.522
-8.205
X
24
Y
75
-31.644
X_A24:A75_Y
19
4.526
3.314
-0.624
1.788
-17.290
Y
66
Y
73
-134.821
Y_U66:U73_Y
20
13.123
-1.362
1.048
-4.130
27.138
3
6
Y
68
Y
72
93.136
Y_G68:G72_Y
21
-9.558
-1.683
-0.903
-3.168
4.864
3
6
X
26
Y
65
91.289
X_G26:G65_Y
22
-4.505
-1.501
-0.346
-3.521
2.397
1
20
X
32
Y
64
-3.403
X_U32:A64_Y
23
2.926
-0.027
-0.373
-0.105
10.773
1
19
X
33
Y
63
-3.988
X_C33:G63_Y
24
-6.303
0.146
-0.312
-0.194
3.811
1
19
X
34
Y
60
-3.916
X_C34:G60_Y
25
-9.162
-0.043
-0.081
-0.136
2.113
1
20
X
35
Y
59
0.382
X_A35:U59_Y
26
-8.784
-0.150
0.248
-0.259
1.743
1
19
X
36
Y
57
-4.746
X_G36:C57_Y
27
-17.294
-0.524
0.497
-0.560
6.423
1
19
X
37
Y
56
2.803
X_C37:G56_Y
28
-13.130
0.118
-0.066
0.166
5.726
1
X
38
Y
55
4.872
X_C38:G55_Y
29
-16.856
0.273
0.118
0.712
0.792
1
19
X
39
Y
54
-5.580
X_G39:C54_Y
30
-11.258
-1.124
0.004
-0.340
-14.350
1
19
X
40
Y
53
-1.391
X_G40:C53_Y
31
-12.740
0.168
-0.083
0.022
4.739
1
19
X
41
Y
52
-2.117
X_C41:G52_Y
32
-12.561
0.074
0.142
-0.069
6.503
1
20
X
42
Y
51
-7.033
X_U42:A51_Y
33
-17.841
-0.201
-0.144
-0.018
-13.253
1
19
X
43
Y
50
-3.258
X_G43:C50_Y
34
-7.775
0.433
0.195
-0.105
3.362
21.643
X
X
1
2
-1.064
Y
Y
101
94
3.555
-0.398
-0.905
-1.426
XX_G1A2:U94CCC101_YY
1
3.909
-10.468
21.287
-3.628
4.068
2.663
35.392
X
X
2
3
13.285
Y
Y
94
93
3.070
8.008
0.847
-1.330
XX_A2C3:G93U94_YY
2
-1.599
2.652
34.466
-3.235
-1.602
2.408
37.166
X
X
3
4
13.468
Y
Y
93
92
2.861
8.513
-0.141
-1.733
XX_C3G4:C92G93_YY
3
-0.468
0.741
36.209
-3.645
0.169
3.087
30.111
X
X
4
5
5.435
Y
Y
92
91
3.267
2.820
0.046
-1.811
XX_G4C5:G91C92_YY
4
-0.327
0.631
29.980
-4.047
-0.153
2.317
32.240
X
X
5
6
13.140
Y
Y
91
90
2.834
7.236
-0.278
-2.086
XX_C5G6:C90G91_YY
5
-1.297
2.356
31.412
-4.785
0.317
2.765
29.258
X
X
6
7
8.318
Y
Y
90
89
3.022
4.185
-0.799
-1.929
XX_G6A7:U89C90_YY
6
-1.818
3.614
28.907
-4.626
1.231
3.016
40.659
X
X
7
8
4.143
Y
Y
89
88
3.169
2.875
0.579
-1.453
XX_A7C8:G88U89_YY
7
-2.911
4.196
40.461
-2.393
-1.139
2.580
30.915
X
X
8
9
13.001
Y
Y
88
87
3.215
6.855
-0.562
-2.118
XX_C8C9:G87G88_YY
8
4.076
-7.730
29.892
-5.172
1.766
3.024
41.472
X
X
9
12
10.034
Y
Y
87
86
3.413
7.073
-1.712
-2.045
XX_C9A12:U86G87_YY
9
0.246
-0.349
40.890
-3.635
2.444
3.182
49.360
X
X
12
14
3.480
Y
Y
86
85
3.176
2.904
-2.592
-1.758
XX_A12G14:C85U86_YY
10
-2.234
2.677
49.232
-2.316
2.943
2.952
88.640
X
X
14
17
3.589
Y
Y
85
82
3.356
5.003
3.517
0.077
XX_G14A17:U82C85_YY
11
-12.180
8.737
87.858
-0.046
-2.764
3.506
41.500
X
X
17
18
-1.630
Y
Y
82
81
3.457
-1.155
0.823
-1.294
XX_A17U18:G81U82_YY
12
0.833
-1.176
41.477
-1.696
-1.067
4.480
6.840
X
X
18
19
2.505
Y
Y
81
80
3.819
0.290
-2.711
-2.707
XX_U18G19:C80G81_YY
13
-2.827
24.436
6.222
-24.231
7.686
2.530
26.385
X
X
19
20
13.713
Y
Y
80
79
3.031
6.201
0.948
-1.949
XX_G19G20:C79C80_YY
14
0.948
-2.097
25.641
-5.697
-1.858
2.528
33.774
X
X
20
21
11.250
Y
Y
79
78
3.023
6.430
-0.183
-2.119
XX_G20U21:U78C79_YY
15
-8.518
14.903
32.090
-4.555
-0.888
2.936
43.316
X
X
21
22
20.564
Y
Y
78
77
3.737
14.870
-0.283
-1.655
XX_U21G22:C77U78_YY
16
4.609
-6.374
40.548
-3.775
0.859
2.639
31.295
X
X
22
23
10.581
Y
Y
77
76
2.964
5.677
-1.038
-1.747
XX_G22A23:G76C77_YY
17
-0.988
1.842
30.773
-4.165
1.764
2.969
41.223
X
X
23
24
4.878
Y
Y
76
75
3.287
3.410
-0.728
-1.343
XX_A23A24:A75G76_YY
18
8.253
-11.808
40.285
-2.263
1.895
-3.830
177.692
X
Y
24
66
-71.065
Y
Y
75
73
-4.722
-141.589
2.313
-2.059
XY_A24U66:U73A75_YY
19
-104.032
52.215
115.104
-2.032
-0.420
-1.865
175.042
Y
Y
66
68
-70.148
Y
Y
73
72
1.666
-137.591
-4.942
-0.542
YY_U66G68:G72U73_YY
20
107.657
-54.886
41.157
-0.325
2.431
6.369
-146.534
X
X
26
32
2.207
Y
Y
65
64
6.370
-4.228
0.888
0.442
XX_G26U32:A64G65_YY
21
2.102
1.098
-146.505
-0.194
0.482
2.596
33.910
X
X
32
33
13.311
Y
Y
64
63
3.145
7.693
0.899
-1.820
XX_U32C33:G63A64_YY
22
-2.443
4.227
32.963
-4.221
-1.891
2.813
42.628
X
X
33
34
14.490
Y
Y
63
60
3.332
10.436
1.164
-1.876
XX_C33C34:G60G63_YY
23
0.492
-0.683
41.386
-3.583
-1.554
2.886
34.044
X
X
34
35
6.951
Y
Y
60
59
3.346
4.040
0.901
-2.013
XX_C34A35:U59G60_YY
24
-6.035
10.384
33.282
-4.059
-2.466
2.906
43.152
X
X
35
36
5.469
Y
Y
59
57
3.102
4.016
1.186
-1.575
XX_A35G36:C57U59_YY
25
-1.595
2.171
42.946
-2.504
-1.757
3.000
36.562
X
X
36
37
7.199
Y
Y
57
56
3.216
4.504
0.389
-1.736
XX_G36C37:G56C57_YY
26
1.556
-2.487
36.261
-3.359
-0.415
2.943
34.494
X
X
37
38
9.093
Y
Y
56
55
3.144
5.366
0.679
-1.366
XX_C37C38:G55G56_YY
27
2.638
-4.469
33.987
-3.084
-0.761
1.489
26.233
X
X
38
39
32.330
Y
Y
55
54
3.128
13.939
-0.387
-2.253
XX_C38G39:C54G55_YY
28
-0.678
1.572
22.268
-7.848
0.714
3.102
45.873
X
X
39
40
13.416
Y
Y
54
53
3.528
10.375
-0.054
-1.594
XX_G39G40:C53C54_YY
29
0.722
-0.933
44.740
-2.969
0.134
2.757
26.531
X
X
40
41
3.727
Y
Y
53
52
2.822
1.709
-0.343
-1.052
XX_G40C41:G52C53_YY
30
-0.637
1.389
26.469
-2.677
0.605
2.092
29.396
X
X
41
42
24.065
Y
Y
52
51
3.031
11.814
0.326
-1.774
XX_C41U42:A51G52_YY
31
5.153
-10.497
26.476
-5.589
0.271
2.780
40.545
X
X
42
43
26.932
Y
Y
51
50
3.810
18.004
0.558
-1.294
XX_U42G43:C50A51_YY
32
-5.372
8.037
36.092
-4.022
-1.448
entity
pdbx_database_status
pdbx_entity_src_syn
pdbx_struct_oper_list
software
atom_site
atom_site_anisotrop
chem_comp
entity
entity_name_com
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule_features
pdbx_nonpoly_scheme
pdbx_struct_conn_angle
refine_hist
struct_asym
struct_conn
struct_conn_type
struct_site
struct_site_gen
atom_site
atom_site_anisotrop
chem_comp
database_2
entity
ndb_struct_na_base_pair
ndb_struct_na_base_pair_step
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_poly_seq_scheme
pdbx_struct_assembly_gen
pdbx_struct_conn_angle
pdbx_unobs_or_zero_occ_residues
struct_asym
struct_conn
struct_ref_seq
chem_comp_atom
chem_comp_bond
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Database references
Derived calculations
Other
Refinement description
Source and taxonomy
Structure summary
Atomic model
Data collection
Derived calculations
Non-polymer description
Refinement description
Structure summary
Advisory
Atomic model
Data collection
Database references
Derived calculations
Structure summary
Data collection
1
0
2014-07-23
1
1
2014-08-06
1
2
2014-10-01
1
3
2017-11-22
2
0
2020-07-29
3
0
2022-04-13
3
1
2023-12-27
_entity.pdbx_description
_entity.src_method
_pdbx_database_status.pdb_format_compatible
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_struct_oper_list.symmetry_operation
_software.classification
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.pdbx_formal_charge
_atom_site.type_symbol
_atom_site_anisotrop.id
_atom_site_anisotrop.pdbx_label_asym_id
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.src_method
_entity.type
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_refine_hist.pdbx_number_atoms_nucleic_acid
_refine_hist.pdbx_number_atoms_protein
_struct_asym.entity_id
_struct_conn_type.id
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_formal_charge
_atom_site.type_symbol
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.value
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_auth_seq_align_end
E
SUC
1
n
A
GLC
1
E
SUC
1
n
A
FRU
2
DFrufb
b-D-fructofuranose
b-D-Fruf
Fru
DGlcpa
a-D-glucopyranose
a-D-Glcp
Glc
N
RCSB
Y
RCSB
2014-06-18
REL
REL
oligosaccharide
DFrufb2-1DGlcpa
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[ha122h-2b_2-5][a2122h-1a_1-5]/1-2/a2-b1
3
PDB2Glycan
1.1.0
WURCS
[][b-D-Fruf]{[(2+1)][a-D-Glcp]{}}
3
PDB-CARE
LINUCS
C1
O2
GLC
FRU
1
2
3
O1
HO2
sing
n
n
MG
MAGNESIUM ION
K
POTASSIUM ION
38E
(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one
HOH
water
32630
synthetic construct
sample
1
44
32630
synthetic construct
sample
1
47
Nutrient
oligosaccharide with reducing-end-to-reducing-end glycosidic bond
sucrose
Oligosaccharide
MG
4
4
MG
MG
101
X
K
1
5
K
K
201
Y
K
2
5
K
K
202
Y
K
3
5
K
K
203
Y
XDF
1
6
38E
38E
204
Y
HOH
5
7
HOH
HOH
201
X
HOH
9
7
HOH
HOH
202
X
HOH
6
7
HOH
HOH
301
Y
HOH
8
7
HOH
HOH
302
Y
HOH
7
7
HOH
HOH
303
Y
G
1
n
1
G
1
X
A
2
n
2
A
2
X
C
3
n
3
C
3
X
G
4
n
4
G
4
X
C
5
n
5
C
5
X
G
6
n
6
G
6
X
A
7
n
7
A
7
X
C
8
n
8
C
8
X
C
9
n
9
C
9
X
G
10
n
10
G
10
X
A
11
n
11
A
11
X
A
12
n
12
A
12
X
U
13
n
13
U
13
X
G
14
n
14
G
14
X
A
15
n
15
A
15
X
A
16
n
16
A
16
X
A
17
n
17
A
17
X
U
18
n
18
U
18
X
G
19
n
19
G
19
X
G
20
n
20
G
20
X
U
21
n
21
U
21
X
G
22
n
22
G
22
X
A
23
n
23
A
23
X
A
24
n
24
A
24
X
G
25
n
25
G
25
X
G
26
n
26
G
26
X
A
27
n
27
A
27
X
C
28
n
28
C
28
X
G
29
n
29
G
29
X
G
30
n
30
G
30
X
G
31
n
31
G
31
X
U
32
n
32
U
32
X
C
33
n
33
C
33
X
C
34
n
34
C
34
X
A
35
n
35
A
35
X
G
36
n
36
G
36
X
C
37
n
37
C
37
X
C
38
n
38
C
38
X
G
39
n
39
G
39
X
G
40
n
40
G
40
X
C
41
n
41
C
41
X
U
42
n
42
U
42
X
G
43
n
43
G
43
X
CCC
44
n
44
CCC
44
X
G
49
n
1
G
49
Y
C
50
n
2
C
50
Y
A
51
n
3
A
51
Y
G
52
n
4
G
52
Y
C
53
n
5
C
53
Y
C
54
n
6
C
54
Y
G
55
n
7
G
55
Y
G
56
n
8
G
56
Y
C
57
n
9
C
57
Y
U
58
n
10
U
58
Y
U
59
n
11
U
59
Y
G
60
n
12
G
60
Y
U
61
n
13
U
61
Y
U
62
n
14
U
62
Y
G
63
n
15
G
63
Y
A
64
n
16
A
64
Y
G
65
n
17
G
65
Y
U
66
n
18
U
66
Y
A
67
n
19
A
67
Y
G
68
n
20
G
68
Y
A
69
n
21
A
69
Y
G
70
n
22
G
70
Y
U
71
n
23
U
71
Y
G
72
n
24
G
72
Y
U
73
n
25
U
73
Y
G
74
n
26
G
74
Y
A
75
n
27
A
75
Y
G
76
n
28
G
76
Y
C
77
n
29
C
77
Y
U
78
n
30
U
78
Y
C
79
n
31
C
79
Y
C
80
n
32
C
80
Y
G
81
n
33
G
81
Y
U
82
n
34
U
82
Y
A
83
n
35
A
83
Y
A
84
n
36
A
84
Y
C
85
n
37
C
85
Y
U
86
n
38
U
86
Y
G
87
n
39
G
87
Y
G
88
n
40
G
88
Y
U
89
n
41
U
89
Y
C
90
n
42
C
90
Y
G
91
n
43
G
91
Y
C
92
n
44
C
92
Y
G
93
n
45
G
93
Y
U
94
n
46
U
94
Y
CCC
95
n
47
CCC
101
Y
1.0718
-0.5619
-0.6191
0.7337
0.2149
0.9165
0.2034
-0.1564
-0.2960
-0.1055
-0.0009
0.3519
0.0926
0.1414
-0.2025
0.1872
0.0011
-0.1456
0.2896
0.0442
0.3944
refined
-18.3214
2.0927
-1.3038
X-RAY DIFFRACTION
X
1
X
44
X-RAY DIFFRACTION
1
Y
49
Y
95
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
2
dimeric
6790
-39
15060
X
G
25
A
O6
G
25
1_555
Y
K
201
E
K
K
1_555
X
G
29
A
O6
G
29
1_555
63.9
X
G
25
A
O6
G
25
1_555
Y
K
201
E
K
K
1_555
Y
G
68
B
O6
G
20
1_555
73.4
X
G
29
A
O6
G
29
1_555
Y
K
201
E
K
K
1_555
Y
G
68
B
O6
G
20
1_555
102.1
X
G
25
A
O6
G
25
1_555
Y
K
201
E
K
K
1_555
Y
G
72
B
O6
G
24
1_555
108.1
X
G
29
A
O6
G
29
1_555
Y
K
201
E
K
K
1_555
Y
G
72
B
O6
G
24
1_555
69.3
Y
G
68
B
O6
G
20
1_555
Y
K
201
E
K
K
1_555
Y
G
72
B
O6
G
24
1_555
66.6
X
G
25
A
O6
G
25
1_555
Y
K
201
E
K
K
1_555
Y
U
73
B
O2'
U
25
1_555
145.6
X
G
29
A
O6
G
29
1_555
Y
K
201
E
K
K
1_555
Y
U
73
B
O2'
U
25
1_555
146.8
Y
G
68
B
O6
G
20
1_555
Y
K
201
E
K
K
1_555
Y
U
73
B
O2'
U
25
1_555
82.0
Y
G
72
B
O6
G
24
1_555
Y
K
201
E
K
K
1_555
Y
U
73
B
O2'
U
25
1_555
82.8
X
G
25
A
O6
G
25
1_555
Y
K
201
E
K
K
1_555
Y
U
73
B
O2
U
25
1_555
82.8
X
G
29
A
O6
G
29
1_555
Y
K
201
E
K
K
1_555
Y
U
73
B
O2
U
25
1_555
146.7
Y
G
68
B
O6
G
20
1_555
Y
K
201
E
K
K
1_555
Y
U
73
B
O2
U
25
1_555
65.9
Y
G
72
B
O6
G
24
1_555
Y
K
201
E
K
K
1_555
Y
U
73
B
O2
U
25
1_555
125.2
Y
U
73
B
O2'
U
25
1_555
Y
K
201
E
K
K
1_555
Y
U
73
B
O2
U
25
1_555
65.1
X
G
25
A
O6
G
25
1_555
Y
K
201
E
K
K
1_555
Y
G
74
B
O6
G
26
1_555
100.6
X
G
29
A
O6
G
29
1_555
Y
K
201
E
K
K
1_555
Y
G
74
B
O6
G
26
1_555
63.5
Y
G
68
B
O6
G
20
1_555
Y
K
201
E
K
K
1_555
Y
G
74
B
O6
G
26
1_555
165.3
Y
G
72
B
O6
G
24
1_555
Y
K
201
E
K
K
1_555
Y
G
74
B
O6
G
26
1_555
103.7
Y
U
73
B
O2'
U
25
1_555
Y
K
201
E
K
K
1_555
Y
G
74
B
O6
G
26
1_555
108.5
Y
U
73
B
O2
U
25
1_555
Y
K
201
E
K
K
1_555
Y
G
74
B
O6
G
26
1_555
127.5
X
G
25
A
O6
G
25
1_555
Y
K
202
F
K
K
1_555
X
G
26
A
O6
G
26
1_555
86.4
X
G
25
A
O6
G
25
1_555
Y
K
202
F
K
K
1_555
X
G
29
A
O6
G
29
1_555
66.2
X
G
26
A
O6
G
26
1_555
Y
K
202
F
K
K
1_555
X
G
29
A
O6
G
29
1_555
84.7
X
G
25
A
O6
G
25
1_555
Y
K
202
F
K
K
1_555
X
G
30
A
O6
G
30
1_555
135.8
X
G
26
A
O6
G
26
1_555
Y
K
202
F
K
K
1_555
X
G
30
A
O6
G
30
1_555
69.5
X
G
29
A
O6
G
29
1_555
Y
K
202
F
K
K
1_555
X
G
30
A
O6
G
30
1_555
74.9
X
G
25
A
O6
G
25
1_555
Y
K
202
F
K
K
1_555
Y
G
65
B
O6
G
17
1_555
100.5
X
G
26
A
O6
G
26
1_555
Y
K
202
F
K
K
1_555
Y
G
65
B
O6
G
17
1_555
69.9
X
G
29
A
O6
G
29
1_555
Y
K
202
F
K
K
1_555
Y
G
65
B
O6
G
17
1_555
152.4
X
G
30
A
O6
G
30
1_555
Y
K
202
F
K
K
1_555
Y
G
65
B
O6
G
17
1_555
104.7
X
G
25
A
O6
G
25
1_555
Y
K
202
F
K
K
1_555
Y
G
68
B
O6
G
20
1_555
80.1
X
G
26
A
O6
G
26
1_555
Y
K
202
F
K
K
1_555
Y
G
68
B
O6
G
20
1_555
144.7
X
G
29
A
O6
G
29
1_555
Y
K
202
F
K
K
1_555
Y
G
68
B
O6
G
20
1_555
118.2
X
G
30
A
O6
G
30
1_555
Y
K
202
F
K
K
1_555
Y
G
68
B
O6
G
20
1_555
139.2
Y
G
65
B
O6
G
17
1_555
Y
K
202
F
K
K
1_555
Y
G
68
B
O6
G
20
1_555
80.7
X
G
25
A
O6
G
25
1_555
Y
K
202
F
K
K
1_555
Y
G
70
B
O6
G
22
1_555
157.2
X
G
26
A
O6
G
26
1_555
Y
K
202
F
K
K
1_555
Y
G
70
B
O6
G
22
1_555
104.4
X
G
29
A
O6
G
29
1_555
Y
K
202
F
K
K
1_555
Y
G
70
B
O6
G
22
1_555
133.8
X
G
30
A
O6
G
30
1_555
Y
K
202
F
K
K
1_555
Y
G
70
B
O6
G
22
1_555
66.9
Y
G
65
B
O6
G
17
1_555
Y
K
202
F
K
K
1_555
Y
G
70
B
O6
G
22
1_555
65.9
Y
G
68
B
O6
G
20
1_555
Y
K
202
F
K
K
1_555
Y
G
70
B
O6
G
22
1_555
79.6
X
G
25
A
O6
G
25
1_555
Y
K
202
F
K
K
1_555
Y
G
72
B
O6
G
24
1_555
109.4
X
G
26
A
O6
G
26
1_555
Y
K
202
F
K
K
1_555
Y
G
72
B
O6
G
24
1_555
142.5
X
G
29
A
O6
G
29
1_555
Y
K
202
F
K
K
1_555
Y
G
72
B
O6
G
24
1_555
72.2
X
G
30
A
O6
G
30
1_555
Y
K
202
F
K
K
1_555
Y
G
72
B
O6
G
24
1_555
76.2
Y
G
65
B
O6
G
17
1_555
Y
K
202
F
K
K
1_555
Y
G
72
B
O6
G
24
1_555
135.1
Y
G
68
B
O6
G
20
1_555
Y
K
202
F
K
K
1_555
Y
G
72
B
O6
G
24
1_555
72.6
Y
G
70
B
O6
G
22
1_555
Y
K
202
F
K
K
1_555
Y
G
72
B
O6
G
24
1_555
74.2
X
G
26
A
OP2
G
26
1_555
X
MG
101
D
MG
MG
1_555
Y
HOH
302
J
O
HOH
1_555
90.1
X
G
26
A
OP2
G
26
1_555
X
MG
101
D
MG
MG
1_555
Y
HOH
303
J
O
HOH
1_555
77.5
Y
HOH
302
J
O
HOH
1_555
X
MG
101
D
MG
MG
1_555
Y
HOH
303
J
O
HOH
1_555
104.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
X
N9
A
11
A
N9
A
11
1
Y
1
X
C8
A
11
A
C8
A
11
1
Y
1
X
N7
A
11
A
N7
A
11
1
Y
1
X
C5
A
11
A
C5
A
11
1
Y
1
X
C6
A
11
A
C6
A
11
1
Y
1
X
N6
A
11
A
N6
A
11
1
Y
1
X
N1
A
11
A
N1
A
11
1
Y
1
X
C2
A
11
A
C2
A
11
1
Y
1
X
N3
A
11
A
N3
A
11
1
Y
1
X
C4
A
11
A
C4
A
11
1
Y
1
X
N1
U
13
A
N1
U
13
1
Y
1
X
C2
U
13
A
C2
U
13
1
Y
1
X
O2
U
13
A
O2
U
13
1
Y
1
X
N3
U
13
A
N3
U
13
1
Y
1
X
C4
U
13
A
C4
U
13
1
Y
1
X
O4
U
13
A
O4
U
13
1
Y
1
X
C5
U
13
A
C5
U
13
1
Y
1
X
C6
U
13
A
C6
U
13
1
Y
1
Y
N1
U
58
B
N1
U
10
1
Y
1
Y
C2
U
58
B
C2
U
10
1
Y
1
Y
O2
U
58
B
O2
U
10
1
Y
1
Y
N3
U
58
B
N3
U
10
1
Y
1
Y
C4
U
58
B
C4
U
10
1
Y
1
Y
O4
U
58
B
O4
U
10
1
Y
1
Y
C5
U
58
B
C5
U
10
1
Y
1
Y
C6
U
58
B
C6
U
10
1
Y
1
Y
N1
U
62
B
N1
U
14
1
Y
1
Y
C2
U
62
B
C2
U
14
1
Y
1
Y
O2
U
62
B
O2
U
14
1
Y
1
Y
N3
U
62
B
N3
U
14
1
Y
1
Y
C4
U
62
B
C4
U
14
1
Y
1
Y
O4
U
62
B
O4
U
14
1
Y
1
Y
C5
U
62
B
C5
U
14
1
Y
1
Y
C6
U
62
B
C6
U
14
1
Y
1
7.68
1.20
110.70
118.38
X
X
X
O5'
P
OP2
G
G
G
19
19
19
N
1
-8.48
0.90
105.70
97.22
X
X
X
O5'
P
OP2
G
G
G
20
20
20
N
1
-7.78
0.90
105.70
97.92
Y
Y
Y
O5'
P
OP2
U
U
U
71
71
71
N
1
X
X
O3'
P
G
A
10
11
-0.077
0.012
1.607
1.530
Y
263.470
108.6010
54.010
1.5100
0.0000
0.0000
-2.3100
0.0000
0.8000
0.9500
0.9430
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED
0.2566
0.2129
0.2154
2.8840
50.0000
477
8415
8892
5.4000
99.3400
33.0180
0.2990
RANDOM
1
THROUGHOUT
0.000
1.2130
0.3660
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
2.8840
50.0000
5
1972
135.28
99.10
68
1899
0
90
0.007
0.011
2194
0.003
0.020
905
1.732
1.345
3420
1.909
3.000
2197
0.096
0.200
369
0.010
0.020
1083
0.002
0.020
482
6.094
8.349
2194
0.5620
0.4680
2.9590
29
580
609
20
99.0200
2.88
50.0
4TS2
8415
1
23.9
5.1
99.6
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.8.0071
data extraction
PDB
deposit@deposit.rcsb.org
Dec. 10, 2013
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.14
Crystal structure of the Spinach RNA aptamer in complex with DFHBI, magnesium ions
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
7
N
N
7
N
N
covale
1.595
both
X
G
43
A
O3'
G
43
1_555
X
CCC
44
A
P
CCC
44
1_555
covale
1.604
both
Y
U
94
B
O3'
U
46
1_555
Y
CCC
101
B
P
CCC
47
1_555
covale
1.438
both
A
GLC
1
C
C1
GLC
1_555
A
FRU
2
C
O2
FRU
1_555
metalc
2.902
X
G
25
A
O6
G
25
1_555
Y
K
201
E
K
K
1_555
metalc
2.891
X
G
25
A
O6
G
25
1_555
Y
K
202
F
K
K
1_555
metalc
2.905
X
G
26
A
OP2
G
26
1_555
X
MG
101
D
MG
MG
1_555
metalc
2.665
X
G
26
A
O6
G
26
1_555
Y
K
202
F
K
K
1_555
metalc
3.235
X
G
29
A
O6
G
29
1_555
Y
K
201
E
K
K
1_555
metalc
3.067
X
G
29
A
O6
G
29
1_555
Y
K
202
F
K
K
1_555
metalc
2.851
X
G
30
A
O6
G
30
1_555
Y
K
202
F
K
K
1_555
metalc
2.359
X
MG
101
D
MG
MG
1_555
Y
HOH
302
J
O
HOH
1_555
metalc
2.093
X
MG
101
D
MG
MG
1_555
Y
HOH
303
J
O
HOH
1_555
metalc
2.807
Y
G
65
B
O6
G
17
1_555
Y
K
202
F
K
K
1_555
metalc
2.961
Y
G
68
B
O6
G
20
1_555
Y
K
201
E
K
K
1_555
metalc
2.542
Y
G
68
B
O6
G
20
1_555
Y
K
202
F
K
K
1_555
metalc
2.721
Y
G
70
B
O6
G
22
1_555
Y
K
202
F
K
K
1_555
metalc
2.962
Y
G
72
B
O6
G
24
1_555
Y
K
201
E
K
K
1_555
metalc
2.925
Y
G
72
B
O6
G
24
1_555
Y
K
202
F
K
K
1_555
metalc
2.875
Y
U
73
B
O2'
U
25
1_555
Y
K
201
E
K
K
1_555
metalc
2.715
Y
U
73
B
O2
U
25
1_555
Y
K
201
E
K
K
1_555
metalc
2.877
Y
G
74
B
O6
G
26
1_555
Y
K
201
E
K
K
1_555
hydrog
WATSON-CRICK
X
G
1
A
N1
G
1
1_555
Y
CCC
101
B
N3
CCC
47
1_555
hydrog
WATSON-CRICK
X
G
1
A
N2
G
1
1_555
Y
CCC
101
B
O2
CCC
47
1_555
hydrog
WATSON-CRICK
X
G
1
A
O6
G
1
1_555
Y
CCC
101
B
N4
CCC
47
1_555
hydrog
WATSON-CRICK
X
A
2
A
N1
A
2
1_555
Y
U
94
B
N3
U
46
1_555
hydrog
WATSON-CRICK
X
A
2
A
N6
A
2
1_555
Y
U
94
B
O4
U
46
1_555
hydrog
WATSON-CRICK
X
C
3
A
N3
C
3
1_555
Y
G
93
B
N1
G
45
1_555
hydrog
WATSON-CRICK
X
C
3
A
N4
C
3
1_555
Y
G
93
B
O6
G
45
1_555
hydrog
WATSON-CRICK
X
C
3
A
O2
C
3
1_555
Y
G
93
B
N2
G
45
1_555
hydrog
WATSON-CRICK
X
G
4
A
N1
G
4
1_555
Y
C
92
B
N3
C
44
1_555
hydrog
WATSON-CRICK
X
G
4
A
N2
G
4
1_555
Y
C
92
B
O2
C
44
1_555
hydrog
WATSON-CRICK
X
G
4
A
O6
G
4
1_555
Y
C
92
B
N4
C
44
1_555
hydrog
WATSON-CRICK
X
C
5
A
N3
C
5
1_555
Y
G
91
B
N1
G
43
1_555
hydrog
WATSON-CRICK
X
C
5
A
N4
C
5
1_555
Y
G
91
B
O6
G
43
1_555
hydrog
WATSON-CRICK
X
C
5
A
O2
C
5
1_555
Y
G
91
B
N2
G
43
1_555
hydrog
WATSON-CRICK
X
G
6
A
N1
G
6
1_555
Y
C
90
B
N3
C
42
1_555
hydrog
WATSON-CRICK
X
G
6
A
N2
G
6
1_555
Y
C
90
B
O2
C
42
1_555
hydrog
WATSON-CRICK
X
G
6
A
O6
G
6
1_555
Y
C
90
B
N4
C
42
1_555
hydrog
WATSON-CRICK
X
A
7
A
N1
A
7
1_555
Y
U
89
B
N3
U
41
1_555
hydrog
WATSON-CRICK
X
A
7
A
N6
A
7
1_555
Y
U
89
B
O4
U
41
1_555
hydrog
WATSON-CRICK
X
C
8
A
N3
C
8
1_555
Y
G
88
B
N1
G
40
1_555
hydrog
WATSON-CRICK
X
C
8
A
N4
C
8
1_555
Y
G
88
B
O6
G
40
1_555
hydrog
WATSON-CRICK
X
C
8
A
O2
C
8
1_555
Y
G
88
B
N2
G
40
1_555
hydrog
WATSON-CRICK
X
C
9
A
N3
C
9
1_555
Y
G
87
B
N1
G
39
1_555
hydrog
WATSON-CRICK
X
C
9
A
N4
C
9
1_555
Y
G
87
B
O6
G
39
1_555
hydrog
WATSON-CRICK
X
C
9
A
O2
C
9
1_555
Y
G
87
B
N2
G
39
1_555
hydrog
TYPE_6_PAIR
X
G
10
A
N1
G
10
1_555
X
G
14
A
O6
G
14
1_555
hydrog
TYPE_6_PAIR
X
G
10
A
N2
G
10
1_555
X
G
14
A
N7
G
14
1_555
hydrog
G-C PAIR
X
G
10
A
O6
G
10
1_555
Y
C
85
B
N4
C
37
1_555
hydrog
WATSON-CRICK
X
A
12
A
N1
A
12
1_555
Y
U
86
B
N3
U
38
1_555
hydrog
WATSON-CRICK
X
A
12
A
N6
A
12
1_555
Y
U
86
B
O4
U
38
1_555
hydrog
WATSON-CRICK
X
G
14
A
N1
G
14
1_555
Y
C
85
B
N3
C
37
1_555
hydrog
WATSON-CRICK
X
G
14
A
N2
G
14
1_555
Y
C
85
B
O2
C
37
1_555
hydrog
WATSON-CRICK
X
G
14
A
O6
G
14
1_555
Y
C
85
B
N4
C
37
1_555
hydrog
WATSON-CRICK
X
A
17
A
N1
A
17
1_555
Y
U
82
B
N3
U
34
1_555
hydrog
WATSON-CRICK
X
A
17
A
N6
A
17
1_555
Y
U
82
B
O4
U
34
1_555
hydrog
A-A MISPAIR
X
A
17
A
N3
A
17
1_555
Y
A
84
B
N6
A
36
1_555
hydrog
U-G MISPAIR
X
U
18
A
O2
U
18
1_555
Y
G
81
B
N1
G
33
1_555
hydrog
WATSON-CRICK
X
G
19
A
N1
G
19
1_555
Y
C
80
B
N3
C
32
1_555
hydrog
WATSON-CRICK
X
G
19
A
N2
G
19
1_555
Y
C
80
B
O2
C
32
1_555
hydrog
WATSON-CRICK
X
G
19
A
O6
G
19
1_555
Y
C
80
B
N4
C
32
1_555
hydrog
WATSON-CRICK
X
G
20
A
N1
G
20
1_555
Y
C
79
B
N3
C
31
1_555
hydrog
WATSON-CRICK
X
G
20
A
N2
G
20
1_555
Y
C
79
B
O2
C
31
1_555
hydrog
WATSON-CRICK
X
G
20
A
O6
G
20
1_555
Y
C
79
B
N4
C
31
1_555
hydrog
TYPE_16_PAIR
X
U
21
A
N3
U
21
1_555
Y
U
78
B
O2
U
30
1_555
hydrog
TYPE_16_PAIR
X
U
21
A
O4
U
21
1_555
Y
U
78
B
N3
U
30
1_555
hydrog
WATSON-CRICK
X
G
22
A
N1
G
22
1_555
Y
C
77
B
N3
C
29
1_555
hydrog
WATSON-CRICK
X
G
22
A
N2
G
22
1_555
Y
C
77
B
O2
C
29
1_555
hydrog
WATSON-CRICK
X
G
22
A
O6
G
22
1_555
Y
C
77
B
N4
C
29
1_555
hydrog
TYPE_8_PAIR
X
A
23
A
N1
A
23
1_555
Y
G
76
B
N1
G
28
1_555
hydrog
TYPE_8_PAIR
X
A
23
A
N6
A
23
1_555
Y
G
76
B
O6
G
28
1_555
hydrog
A-A MISPAIR
X
A
24
A
N1
A
24
1_555
Y
A
75
B
N6
A
27
1_555
hydrog
TYPE_6_PAIR
X
G
25
A
N1
G
25
1_555
X
G
29
A
O6
G
29
1_555
hydrog
TYPE_6_PAIR
X
G
25
A
N2
G
25
1_555
X
G
29
A
N7
G
29
1_555
hydrog
TYPE_6_PAIR
X
G
25
A
N7
G
25
1_555
Y
G
68
B
N2
G
20
1_555
hydrog
TYPE_6_PAIR
X
G
25
A
O6
G
25
1_555
Y
G
68
B
N1
G
20
1_555
hydrog
TYPE_6_PAIR
X
G
26
A
N1
G
26
1_555
X
G
30
A
O6
G
30
1_555
hydrog
TYPE_6_PAIR
X
G
26
A
N2
G
26
1_555
X
G
30
A
N7
G
30
1_555
hydrog
TYPE_6_PAIR
X
G
26
A
N7
G
26
1_555
Y
G
65
B
N2
G
17
1_555
hydrog
TYPE_6_PAIR
X
G
26
A
O6
G
26
1_555
Y
G
65
B
N1
G
17
1_555
hydrog
C-U MISPAIR
X
C
28
A
N4
C
28
1_555
Y
U
66
B
O4
U
18
1_555
hydrog
WATSON-CRICK
X
C
28
A
N3
C
28
1_555
Y
G
74
B
N1
G
26
1_555
hydrog
WATSON-CRICK
X
C
28
A
N4
C
28
1_555
Y
G
74
B
O6
G
26
1_555
hydrog
WATSON-CRICK
X
C
28
A
O2
C
28
1_555
Y
G
74
B
N2
G
26
1_555
hydrog
TYPE_6_PAIR
X
G
29
A
N1
G
29
1_555
Y
G
72
B
O6
G
24
1_555
hydrog
TYPE_6_PAIR
X
G
29
A
N2
G
29
1_555
Y
G
72
B
N7
G
24
1_555
hydrog
TYPE_6_PAIR
X
G
30
A
N1
G
30
1_555
Y
G
70
B
O6
G
22
1_555
hydrog
TYPE_6_PAIR
X
G
30
A
N2
G
30
1_555
Y
G
70
B
N7
G
22
1_555
hydrog
WATSON-CRICK
X
U
32
A
N3
U
32
1_555
Y
A
64
B
N1
A
16
1_555
hydrog
WATSON-CRICK
X
U
32
A
O4
U
32
1_555
Y
A
64
B
N6
A
16
1_555
hydrog
WATSON-CRICK
X
C
33
A
N3
C
33
1_555
Y
G
63
B
N1
G
15
1_555
hydrog
WATSON-CRICK
X
C
33
A
N4
C
33
1_555
Y
G
63
B
O6
G
15
1_555
hydrog
WATSON-CRICK
X
C
33
A
O2
C
33
1_555
Y
G
63
B
N2
G
15
1_555
hydrog
WATSON-CRICK
X
C
34
A
N3
C
34
1_555
Y
G
60
B
N1
G
12
1_555
hydrog
WATSON-CRICK
X
C
34
A
N4
C
34
1_555
Y
G
60
B
O6
G
12
1_555
hydrog
WATSON-CRICK
X
C
34
A
O2
C
34
1_555
Y
G
60
B
N2
G
12
1_555
hydrog
WATSON-CRICK
X
A
35
A
N1
A
35
1_555
Y
U
59
B
N3
U
11
1_555
hydrog
WATSON-CRICK
X
A
35
A
N6
A
35
1_555
Y
U
59
B
O4
U
11
1_555
hydrog
WATSON-CRICK
X
G
36
A
N1
G
36
1_555
Y
C
57
B
N3
C
9
1_555
hydrog
WATSON-CRICK
X
G
36
A
N2
G
36
1_555
Y
C
57
B
O2
C
9
1_555
hydrog
WATSON-CRICK
X
G
36
A
O6
G
36
1_555
Y
C
57
B
N4
C
9
1_555
hydrog
WATSON-CRICK
X
C
37
A
N3
C
37
1_555
Y
G
56
B
N1
G
8
1_555
hydrog
WATSON-CRICK
X
C
37
A
N4
C
37
1_555
Y
G
56
B
O6
G
8
1_555
hydrog
WATSON-CRICK
X
C
37
A
O2
C
37
1_555
Y
G
56
B
N2
G
8
1_555
hydrog
C-G PAIR
X
C
38
A
O2
C
38
1_555
Y
G
55
B
N2
G
7
1_555
hydrog
WATSON-CRICK
X
G
39
A
N1
G
39
1_555
Y
C
54
B
N3
C
6
1_555
hydrog
WATSON-CRICK
X
G
39
A
N2
G
39
1_555
Y
C
54
B
O2
C
6
1_555
hydrog
WATSON-CRICK
X
G
39
A
O6
G
39
1_555
Y
C
54
B
N4
C
6
1_555
hydrog
WATSON-CRICK
X
G
40
A
N1
G
40
1_555
Y
C
53
B
N3
C
5
1_555
hydrog
WATSON-CRICK
X
G
40
A
N2
G
40
1_555
Y
C
53
B
O2
C
5
1_555
hydrog
WATSON-CRICK
X
G
40
A
O6
G
40
1_555
Y
C
53
B
N4
C
5
1_555
hydrog
WATSON-CRICK
X
C
41
A
N3
C
41
1_555
Y
G
52
B
N1
G
4
1_555
hydrog
WATSON-CRICK
X
C
41
A
N4
C
41
1_555
Y
G
52
B
O6
G
4
1_555
hydrog
WATSON-CRICK
X
C
41
A
O2
C
41
1_555
Y
G
52
B
N2
G
4
1_555
hydrog
WATSON-CRICK
X
U
42
A
N3
U
42
1_555
Y
A
51
B
N1
A
3
1_555
hydrog
WATSON-CRICK
X
U
42
A
O4
U
42
1_555
Y
A
51
B
N6
A
3
1_555
hydrog
WATSON-CRICK
X
G
43
A
N1
G
43
1_555
Y
C
50
B
N3
C
2
1_555
hydrog
WATSON-CRICK
X
G
43
A
N2
G
43
1_555
Y
C
50
B
O2
C
2
1_555
hydrog
WATSON-CRICK
X
G
43
A
O6
G
43
1_555
Y
C
50
B
N4
C
2
1_555
hydrog
HOOGSTEEN
Y
U
61
B
N3
U
13
1_555
Y
A
64
B
N7
A
16
1_555
hydrog
HOOGSTEEN
Y
U
61
B
O4
U
13
1_555
Y
A
64
B
N6
A
16
1_555
hydrog
TYPE_6_PAIR
Y
G
65
B
N7
G
17
1_555
Y
G
70
B
N2
G
22
1_555
hydrog
TYPE_6_PAIR
Y
G
65
B
O6
G
17
1_555
Y
G
70
B
N1
G
22
1_555
hydrog
U-U MISPAIR
Y
U
66
B
O2
U
18
1_555
Y
U
73
B
N3
U
25
1_555
hydrog
TYPE_6_PAIR
Y
G
68
B
N7
G
20
1_555
Y
G
72
B
N2
G
24
1_555
hydrog
TYPE_6_PAIR
Y
G
68
B
O6
G
20
1_555
Y
G
72
B
N1
G
24
1_555
RNA
aptamer, fluorescence, G-quadruplex, RNA
4TS2
PDB
1
1
4TS2
4TS2
PDB
2
1
4TS2
1
44
4TS2
1
44
4TS2
X
1
1
44
49
101
4TS2
49
101
4TS2
Y
2
1
47
19
P 21 21 21