0.025077 0.000000 0.000000 0.000000 0.020243 0.000000 0.000000 0.000000 0.005308 0.000000 0.000000 0.000000 Warner, K.D. Chen, M.C. Song, W. Strack, R.L. Thorn, A. Jaffrey, S.R. Ferre-D'Amare, A.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 39.877 49.399 188.410 C12 H10 F2 N2 O2 252.217 (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one non-polymer C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C9 H13 N3 O10 P2 385.161 n CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE RNA linking C6 H12 O6 180.156 beta-D-fructofuranose beta-D-fructose; D-fructose; fructose D-saccharide, beta linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C6 H12 O6 180.156 alpha-D-glucopyranose alpha-D-glucose; D-glucose; glucose D-saccharide, alpha linking H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N F Y 2 N C Y 3 N C N 4 N O Y 5 N C Y 6 N C Y 7 N C Y 8 N C N 9 N F N 10 N C N 11 N C N 12 N C N 13 N O N 14 N N N 15 N C N 16 N C N 17 N N N 18 N C N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N O N 30 N P N 31 N O N 32 N O N 33 N O N 34 N C N 35 R C N 36 N O N 37 S C N 38 N O N 39 R C N 40 N O N 41 R C Y 42 N N Y 43 N C Y 44 N N Y 45 N C Y 46 N C N 47 N N Y 48 N N Y 49 N C Y 50 N N Y 51 N C N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N O N 67 N P N 68 N O N 69 N O N 70 N O N 71 N C N 72 R C N 73 N O N 74 S C N 75 N O N 76 R C N 77 N O N 78 R C N 79 N N N 80 N C N 81 N O N 82 N N N 83 N C N 84 N N N 85 N C N 86 N C N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 S P N 102 N O N 103 N O N 104 N P N 105 N O N 106 N O N 107 N O N 108 N O N 109 N C N 110 R C N 111 N O N 112 R C N 113 N O N 114 R C N 115 N O N 116 R C N 117 N N N 118 N C N 119 N O N 120 N N N 121 N C N 122 N N N 123 N C N 124 N C N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N C N 139 R C N 140 S C N 141 S C N 142 R C N 143 N C N 144 N O N 145 N O N 146 N O N 147 N O N 148 N O N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N O N 163 N P N 164 N O N 165 N O N 166 N O N 167 N C N 168 R C N 169 N O N 170 S C N 171 N O N 172 R C N 173 N O N 174 R C Y 175 N N Y 176 N C Y 177 N N Y 178 N C N 179 N C N 180 N O N 181 N N N 182 N C N 183 N N N 184 N N Y 185 N C N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 S C N 201 R C N 202 S C N 203 S C N 204 R C N 205 N C N 206 N O N 207 N O N 208 N O N 209 N O N 210 N O N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N O N 225 N H N 226 N H N 227 N K N 228 N MG N 229 N O N 230 N P N 231 N O N 232 N O N 233 N O N 234 N C N 235 R C N 236 N O N 237 S C N 238 N O N 239 R C N 240 N O N 241 R C N 242 N N N 243 N C N 244 N O N 245 N N N 246 N C N 247 N O N 248 N C N 249 N C N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 1 N doub N 2 N sing Y 3 N doub Y 4 N sing N 5 N sing N 6 Z doub N 7 N sing N 8 N sing Y 9 N sing Y 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing Y 15 N doub Y 16 N sing N 17 N doub N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N doub N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing Y 54 N sing Y 55 N sing Y 56 N doub N 57 N sing Y 58 N sing Y 59 N sing Y 60 N doub N 61 N sing Y 62 N doub N 63 N sing N 64 N sing Y 65 N sing Y 66 N doub N 67 N sing Y 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N doub N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing Y 192 N sing Y 193 N sing Y 194 N doub N 195 N sing Y 196 N sing N 197 N sing Y 198 N doub N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N doub N 267 N sing N 268 N sing US Nat.Struct.Mol.Biol. 1545-9985 21 658 663 10.1038/nsmb.2865 25026079 Structural basis for activity of highly efficient RNA mimics of green fluorescent protein. 2014 10.2210/pdb4ts2/pdb pdb_00004ts2 100 1 PIXEL 2013-04-03 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.9792 1.0 24-ID-C APS 0.9792 SYNCHROTRON APS BEAMLINE 24-ID-C 14394.598 Spinach aptamer RNA, bimolecular construct 1 syn polymer 15220.934 Spinach aptamer RNA, bimolecular construct 1 syn polymer 342.297 beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose 1 man branched 24.305 MAGNESIUM ION 1 syn non-polymer 39.098 POTASSIUM ION 3 syn non-polymer 252.217 (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one 1 syn non-polymer 18.015 water 5 nat water sucrose no yes GACGCGACCGAAUGAAAUGGUGAAGGACGGGUCCAGCCGGCUG(CCC) GACGCGACCGAAUGAAAUGGUGAAGGACGGGUCCAGCCGGCUGC X polyribonucleotide no yes GCAGCCGGCUUGUUGAGUAGAGUGUGAGCUCCGUAACUGGUCGCGU(CCC) GCAGCCGGCUUGUUGAGUAGAGUGUGAGCUCCGUAACUGGUCGCGUC Y polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 3.13 60.68 VAPOR DIFFUSION, HANGING DROP 20% PEG 3350, 0.5M NaCl, 0.1M succinate-K pH 7.0, 10% sucrose 298 4.322 1 19 X 1 Y 101 1.203 X_G1:CCC101_Y 1 -0.544 0.868 1.285 -0.528 1.983 1 20 X 2 Y 94 6.846 X_A2:U94_Y 2 -6.802 -0.608 0.382 0.400 2.556 1 19 X 3 Y 93 2.871 X_C3:G93_Y 3 -8.217 -0.682 0.487 0.063 1.721 1 19 X 4 Y 92 5.272 X_G4:C92_Y 4 -10.351 0.850 0.468 0.049 -1.288 1 19 X 5 Y 91 5.499 X_C5:G91_Y 5 -9.492 -0.140 0.513 0.145 -0.465 1 19 X 6 Y 90 -0.794 X_G6:C90_Y 6 -9.546 -0.165 0.371 -0.403 1.998 1 20 X 7 Y 89 -6.949 X_A7:U89_Y 7 -2.993 -0.271 0.061 -0.453 3.117 1 19 X 8 Y 88 -2.990 X_C8:G88_Y 8 -6.524 0.618 0.227 -0.674 0.206 1 19 X 9 Y 87 -3.298 X_C9:G87_Y 9 -5.654 -0.054 -0.071 -0.230 -9.243 1 20 X 12 Y 86 -4.067 X_A12:U86_Y 10 -2.263 0.368 -0.004 -0.262 -15.183 1 19 X 14 Y 85 -0.505 X_G14:C85_Y 11 -8.717 -0.309 -0.199 -0.162 4.306 1 20 X 17 Y 82 13.772 X_A17:U82_Y 12 -16.133 0.053 -0.289 0.016 4.332 5 X 18 Y 81 34.097 X_U18:G81_Y 13 -7.748 3.358 -0.543 0.403 0.934 1 19 X 19 Y 80 4.785 X_G19:C80_Y 14 -3.326 -0.686 -0.019 -0.084 2.186 1 19 X 20 Y 79 2.512 X_G20:C79_Y 15 -13.179 -0.972 0.201 -0.566 -1.865 1 16 X 21 Y 78 3.499 X_U21:U78_Y 16 -18.334 -2.397 0.683 -1.914 -24.638 1 19 X 22 Y 77 3.533 X_G22:C77_Y 17 -14.085 -0.579 -0.362 -0.036 -16.350 1 8 X 23 Y 76 -17.881 X_A23:G76_Y 18 -0.762 -0.511 -0.139 1.522 -8.205 X 24 Y 75 -31.644 X_A24:A75_Y 19 4.526 3.314 -0.624 1.788 -17.290 Y 66 Y 73 -134.821 Y_U66:U73_Y 20 13.123 -1.362 1.048 -4.130 27.138 3 6 Y 68 Y 72 93.136 Y_G68:G72_Y 21 -9.558 -1.683 -0.903 -3.168 4.864 3 6 X 26 Y 65 91.289 X_G26:G65_Y 22 -4.505 -1.501 -0.346 -3.521 2.397 1 20 X 32 Y 64 -3.403 X_U32:A64_Y 23 2.926 -0.027 -0.373 -0.105 10.773 1 19 X 33 Y 63 -3.988 X_C33:G63_Y 24 -6.303 0.146 -0.312 -0.194 3.811 1 19 X 34 Y 60 -3.916 X_C34:G60_Y 25 -9.162 -0.043 -0.081 -0.136 2.113 1 20 X 35 Y 59 0.382 X_A35:U59_Y 26 -8.784 -0.150 0.248 -0.259 1.743 1 19 X 36 Y 57 -4.746 X_G36:C57_Y 27 -17.294 -0.524 0.497 -0.560 6.423 1 19 X 37 Y 56 2.803 X_C37:G56_Y 28 -13.130 0.118 -0.066 0.166 5.726 1 X 38 Y 55 4.872 X_C38:G55_Y 29 -16.856 0.273 0.118 0.712 0.792 1 19 X 39 Y 54 -5.580 X_G39:C54_Y 30 -11.258 -1.124 0.004 -0.340 -14.350 1 19 X 40 Y 53 -1.391 X_G40:C53_Y 31 -12.740 0.168 -0.083 0.022 4.739 1 19 X 41 Y 52 -2.117 X_C41:G52_Y 32 -12.561 0.074 0.142 -0.069 6.503 1 20 X 42 Y 51 -7.033 X_U42:A51_Y 33 -17.841 -0.201 -0.144 -0.018 -13.253 1 19 X 43 Y 50 -3.258 X_G43:C50_Y 34 -7.775 0.433 0.195 -0.105 3.362 21.643 X X 1 2 -1.064 Y Y 101 94 3.555 -0.398 -0.905 -1.426 XX_G1A2:U94CCC101_YY 1 3.909 -10.468 21.287 -3.628 4.068 2.663 35.392 X X 2 3 13.285 Y Y 94 93 3.070 8.008 0.847 -1.330 XX_A2C3:G93U94_YY 2 -1.599 2.652 34.466 -3.235 -1.602 2.408 37.166 X X 3 4 13.468 Y Y 93 92 2.861 8.513 -0.141 -1.733 XX_C3G4:C92G93_YY 3 -0.468 0.741 36.209 -3.645 0.169 3.087 30.111 X X 4 5 5.435 Y Y 92 91 3.267 2.820 0.046 -1.811 XX_G4C5:G91C92_YY 4 -0.327 0.631 29.980 -4.047 -0.153 2.317 32.240 X X 5 6 13.140 Y Y 91 90 2.834 7.236 -0.278 -2.086 XX_C5G6:C90G91_YY 5 -1.297 2.356 31.412 -4.785 0.317 2.765 29.258 X X 6 7 8.318 Y Y 90 89 3.022 4.185 -0.799 -1.929 XX_G6A7:U89C90_YY 6 -1.818 3.614 28.907 -4.626 1.231 3.016 40.659 X X 7 8 4.143 Y Y 89 88 3.169 2.875 0.579 -1.453 XX_A7C8:G88U89_YY 7 -2.911 4.196 40.461 -2.393 -1.139 2.580 30.915 X X 8 9 13.001 Y Y 88 87 3.215 6.855 -0.562 -2.118 XX_C8C9:G87G88_YY 8 4.076 -7.730 29.892 -5.172 1.766 3.024 41.472 X X 9 12 10.034 Y Y 87 86 3.413 7.073 -1.712 -2.045 XX_C9A12:U86G87_YY 9 0.246 -0.349 40.890 -3.635 2.444 3.182 49.360 X X 12 14 3.480 Y Y 86 85 3.176 2.904 -2.592 -1.758 XX_A12G14:C85U86_YY 10 -2.234 2.677 49.232 -2.316 2.943 2.952 88.640 X X 14 17 3.589 Y Y 85 82 3.356 5.003 3.517 0.077 XX_G14A17:U82C85_YY 11 -12.180 8.737 87.858 -0.046 -2.764 3.506 41.500 X X 17 18 -1.630 Y Y 82 81 3.457 -1.155 0.823 -1.294 XX_A17U18:G81U82_YY 12 0.833 -1.176 41.477 -1.696 -1.067 4.480 6.840 X X 18 19 2.505 Y Y 81 80 3.819 0.290 -2.711 -2.707 XX_U18G19:C80G81_YY 13 -2.827 24.436 6.222 -24.231 7.686 2.530 26.385 X X 19 20 13.713 Y Y 80 79 3.031 6.201 0.948 -1.949 XX_G19G20:C79C80_YY 14 0.948 -2.097 25.641 -5.697 -1.858 2.528 33.774 X X 20 21 11.250 Y Y 79 78 3.023 6.430 -0.183 -2.119 XX_G20U21:U78C79_YY 15 -8.518 14.903 32.090 -4.555 -0.888 2.936 43.316 X X 21 22 20.564 Y Y 78 77 3.737 14.870 -0.283 -1.655 XX_U21G22:C77U78_YY 16 4.609 -6.374 40.548 -3.775 0.859 2.639 31.295 X X 22 23 10.581 Y Y 77 76 2.964 5.677 -1.038 -1.747 XX_G22A23:G76C77_YY 17 -0.988 1.842 30.773 -4.165 1.764 2.969 41.223 X X 23 24 4.878 Y Y 76 75 3.287 3.410 -0.728 -1.343 XX_A23A24:A75G76_YY 18 8.253 -11.808 40.285 -2.263 1.895 -3.830 177.692 X Y 24 66 -71.065 Y Y 75 73 -4.722 -141.589 2.313 -2.059 XY_A24U66:U73A75_YY 19 -104.032 52.215 115.104 -2.032 -0.420 -1.865 175.042 Y Y 66 68 -70.148 Y Y 73 72 1.666 -137.591 -4.942 -0.542 YY_U66G68:G72U73_YY 20 107.657 -54.886 41.157 -0.325 2.431 6.369 -146.534 X X 26 32 2.207 Y Y 65 64 6.370 -4.228 0.888 0.442 XX_G26U32:A64G65_YY 21 2.102 1.098 -146.505 -0.194 0.482 2.596 33.910 X X 32 33 13.311 Y Y 64 63 3.145 7.693 0.899 -1.820 XX_U32C33:G63A64_YY 22 -2.443 4.227 32.963 -4.221 -1.891 2.813 42.628 X X 33 34 14.490 Y Y 63 60 3.332 10.436 1.164 -1.876 XX_C33C34:G60G63_YY 23 0.492 -0.683 41.386 -3.583 -1.554 2.886 34.044 X X 34 35 6.951 Y Y 60 59 3.346 4.040 0.901 -2.013 XX_C34A35:U59G60_YY 24 -6.035 10.384 33.282 -4.059 -2.466 2.906 43.152 X X 35 36 5.469 Y Y 59 57 3.102 4.016 1.186 -1.575 XX_A35G36:C57U59_YY 25 -1.595 2.171 42.946 -2.504 -1.757 3.000 36.562 X X 36 37 7.199 Y Y 57 56 3.216 4.504 0.389 -1.736 XX_G36C37:G56C57_YY 26 1.556 -2.487 36.261 -3.359 -0.415 2.943 34.494 X X 37 38 9.093 Y Y 56 55 3.144 5.366 0.679 -1.366 XX_C37C38:G55G56_YY 27 2.638 -4.469 33.987 -3.084 -0.761 1.489 26.233 X X 38 39 32.330 Y Y 55 54 3.128 13.939 -0.387 -2.253 XX_C38G39:C54G55_YY 28 -0.678 1.572 22.268 -7.848 0.714 3.102 45.873 X X 39 40 13.416 Y Y 54 53 3.528 10.375 -0.054 -1.594 XX_G39G40:C53C54_YY 29 0.722 -0.933 44.740 -2.969 0.134 2.757 26.531 X X 40 41 3.727 Y Y 53 52 2.822 1.709 -0.343 -1.052 XX_G40C41:G52C53_YY 30 -0.637 1.389 26.469 -2.677 0.605 2.092 29.396 X X 41 42 24.065 Y Y 52 51 3.031 11.814 0.326 -1.774 XX_C41U42:A51G52_YY 31 5.153 -10.497 26.476 -5.589 0.271 2.780 40.545 X X 42 43 26.932 Y Y 51 50 3.810 18.004 0.558 -1.294 XX_U42G43:C50A51_YY 32 -5.372 8.037 36.092 -4.022 -1.448 entity pdbx_database_status pdbx_entity_src_syn pdbx_struct_oper_list software atom_site atom_site_anisotrop chem_comp entity entity_name_com pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_molecule_features pdbx_nonpoly_scheme pdbx_struct_conn_angle refine_hist struct_asym struct_conn struct_conn_type struct_site struct_site_gen atom_site atom_site_anisotrop chem_comp database_2 entity ndb_struct_na_base_pair ndb_struct_na_base_pair_step pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_poly_seq_scheme pdbx_struct_assembly_gen pdbx_struct_conn_angle pdbx_unobs_or_zero_occ_residues struct_asym struct_conn struct_ref_seq chem_comp_atom chem_comp_bond repository Initial release Carbohydrate remediation repository Remediation Database references Database references Derived calculations Other Refinement description Source and taxonomy Structure summary Atomic model Data collection Derived calculations Non-polymer description Refinement description Structure summary Advisory Atomic model Data collection Database references Derived calculations Structure summary Data collection 1 0 2014-07-23 1 1 2014-08-06 1 2 2014-10-01 1 3 2017-11-22 2 0 2020-07-29 3 0 2022-04-13 3 1 2023-12-27 _entity.pdbx_description _entity.src_method _pdbx_database_status.pdb_format_compatible _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_struct_oper_list.symmetry_operation _software.classification _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.pdbx_formal_charge _atom_site.type_symbol _atom_site_anisotrop.id _atom_site_anisotrop.pdbx_label_asym_id _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.src_method _entity.type _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.value _refine_hist.pdbx_number_atoms_nucleic_acid _refine_hist.pdbx_number_atoms_protein _struct_asym.entity_id _struct_conn_type.id _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_formal_charge _atom_site.type_symbol _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_auth_seq_align_end E SUC 1 n A GLC 1 E SUC 1 n A FRU 2 DFrufb b-D-fructofuranose b-D-Fruf Fru DGlcpa a-D-glucopyranose a-D-Glcp Glc N RCSB Y RCSB 2014-06-18 REL REL oligosaccharide DFrufb2-1DGlcpa 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,2,1/[ha122h-2b_2-5][a2122h-1a_1-5]/1-2/a2-b1 3 PDB2Glycan 1.1.0 WURCS [][b-D-Fruf]{[(2+1)][a-D-Glcp]{}} 3 PDB-CARE LINUCS C1 O2 GLC FRU 1 2 3 O1 HO2 sing n n MG MAGNESIUM ION K POTASSIUM ION 38E (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one HOH water 32630 synthetic construct sample 1 44 32630 synthetic construct sample 1 47 Nutrient oligosaccharide with reducing-end-to-reducing-end glycosidic bond sucrose Oligosaccharide MG 4 4 MG MG 101 X K 1 5 K K 201 Y K 2 5 K K 202 Y K 3 5 K K 203 Y XDF 1 6 38E 38E 204 Y HOH 5 7 HOH HOH 201 X HOH 9 7 HOH HOH 202 X HOH 6 7 HOH HOH 301 Y HOH 8 7 HOH HOH 302 Y HOH 7 7 HOH HOH 303 Y G 1 n 1 G 1 X A 2 n 2 A 2 X C 3 n 3 C 3 X G 4 n 4 G 4 X C 5 n 5 C 5 X G 6 n 6 G 6 X A 7 n 7 A 7 X C 8 n 8 C 8 X C 9 n 9 C 9 X G 10 n 10 G 10 X A 11 n 11 A 11 X A 12 n 12 A 12 X U 13 n 13 U 13 X G 14 n 14 G 14 X A 15 n 15 A 15 X A 16 n 16 A 16 X A 17 n 17 A 17 X U 18 n 18 U 18 X G 19 n 19 G 19 X G 20 n 20 G 20 X U 21 n 21 U 21 X G 22 n 22 G 22 X A 23 n 23 A 23 X A 24 n 24 A 24 X G 25 n 25 G 25 X G 26 n 26 G 26 X A 27 n 27 A 27 X C 28 n 28 C 28 X G 29 n 29 G 29 X G 30 n 30 G 30 X G 31 n 31 G 31 X U 32 n 32 U 32 X C 33 n 33 C 33 X C 34 n 34 C 34 X A 35 n 35 A 35 X G 36 n 36 G 36 X C 37 n 37 C 37 X C 38 n 38 C 38 X G 39 n 39 G 39 X G 40 n 40 G 40 X C 41 n 41 C 41 X U 42 n 42 U 42 X G 43 n 43 G 43 X CCC 44 n 44 CCC 44 X G 49 n 1 G 49 Y C 50 n 2 C 50 Y A 51 n 3 A 51 Y G 52 n 4 G 52 Y C 53 n 5 C 53 Y C 54 n 6 C 54 Y G 55 n 7 G 55 Y G 56 n 8 G 56 Y C 57 n 9 C 57 Y U 58 n 10 U 58 Y U 59 n 11 U 59 Y G 60 n 12 G 60 Y U 61 n 13 U 61 Y U 62 n 14 U 62 Y G 63 n 15 G 63 Y A 64 n 16 A 64 Y G 65 n 17 G 65 Y U 66 n 18 U 66 Y A 67 n 19 A 67 Y G 68 n 20 G 68 Y A 69 n 21 A 69 Y G 70 n 22 G 70 Y U 71 n 23 U 71 Y G 72 n 24 G 72 Y U 73 n 25 U 73 Y G 74 n 26 G 74 Y A 75 n 27 A 75 Y G 76 n 28 G 76 Y C 77 n 29 C 77 Y U 78 n 30 U 78 Y C 79 n 31 C 79 Y C 80 n 32 C 80 Y G 81 n 33 G 81 Y U 82 n 34 U 82 Y A 83 n 35 A 83 Y A 84 n 36 A 84 Y C 85 n 37 C 85 Y U 86 n 38 U 86 Y G 87 n 39 G 87 Y G 88 n 40 G 88 Y U 89 n 41 U 89 Y C 90 n 42 C 90 Y G 91 n 43 G 91 Y C 92 n 44 C 92 Y G 93 n 45 G 93 Y U 94 n 46 U 94 Y CCC 95 n 47 CCC 101 Y 1.0718 -0.5619 -0.6191 0.7337 0.2149 0.9165 0.2034 -0.1564 -0.2960 -0.1055 -0.0009 0.3519 0.0926 0.1414 -0.2025 0.1872 0.0011 -0.1456 0.2896 0.0442 0.3944 refined -18.3214 2.0927 -1.3038 X-RAY DIFFRACTION X 1 X 44 X-RAY DIFFRACTION 1 Y 49 Y 95 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 2 dimeric 6790 -39 15060 X G 25 A O6 G 25 1_555 Y K 201 E K K 1_555 X G 29 A O6 G 29 1_555 63.9 X G 25 A O6 G 25 1_555 Y K 201 E K K 1_555 Y G 68 B O6 G 20 1_555 73.4 X G 29 A O6 G 29 1_555 Y K 201 E K K 1_555 Y G 68 B O6 G 20 1_555 102.1 X G 25 A O6 G 25 1_555 Y K 201 E K K 1_555 Y G 72 B O6 G 24 1_555 108.1 X G 29 A O6 G 29 1_555 Y K 201 E K K 1_555 Y G 72 B O6 G 24 1_555 69.3 Y G 68 B O6 G 20 1_555 Y K 201 E K K 1_555 Y G 72 B O6 G 24 1_555 66.6 X G 25 A O6 G 25 1_555 Y K 201 E K K 1_555 Y U 73 B O2' U 25 1_555 145.6 X G 29 A O6 G 29 1_555 Y K 201 E K K 1_555 Y U 73 B O2' U 25 1_555 146.8 Y G 68 B O6 G 20 1_555 Y K 201 E K K 1_555 Y U 73 B O2' U 25 1_555 82.0 Y G 72 B O6 G 24 1_555 Y K 201 E K K 1_555 Y U 73 B O2' U 25 1_555 82.8 X G 25 A O6 G 25 1_555 Y K 201 E K K 1_555 Y U 73 B O2 U 25 1_555 82.8 X G 29 A O6 G 29 1_555 Y K 201 E K K 1_555 Y U 73 B O2 U 25 1_555 146.7 Y G 68 B O6 G 20 1_555 Y K 201 E K K 1_555 Y U 73 B O2 U 25 1_555 65.9 Y G 72 B O6 G 24 1_555 Y K 201 E K K 1_555 Y U 73 B O2 U 25 1_555 125.2 Y U 73 B O2' U 25 1_555 Y K 201 E K K 1_555 Y U 73 B O2 U 25 1_555 65.1 X G 25 A O6 G 25 1_555 Y K 201 E K K 1_555 Y G 74 B O6 G 26 1_555 100.6 X G 29 A O6 G 29 1_555 Y K 201 E K K 1_555 Y G 74 B O6 G 26 1_555 63.5 Y G 68 B O6 G 20 1_555 Y K 201 E K K 1_555 Y G 74 B O6 G 26 1_555 165.3 Y G 72 B O6 G 24 1_555 Y K 201 E K K 1_555 Y G 74 B O6 G 26 1_555 103.7 Y U 73 B O2' U 25 1_555 Y K 201 E K K 1_555 Y G 74 B O6 G 26 1_555 108.5 Y U 73 B O2 U 25 1_555 Y K 201 E K K 1_555 Y G 74 B O6 G 26 1_555 127.5 X G 25 A O6 G 25 1_555 Y K 202 F K K 1_555 X G 26 A O6 G 26 1_555 86.4 X G 25 A O6 G 25 1_555 Y K 202 F K K 1_555 X G 29 A O6 G 29 1_555 66.2 X G 26 A O6 G 26 1_555 Y K 202 F K K 1_555 X G 29 A O6 G 29 1_555 84.7 X G 25 A O6 G 25 1_555 Y K 202 F K K 1_555 X G 30 A O6 G 30 1_555 135.8 X G 26 A O6 G 26 1_555 Y K 202 F K K 1_555 X G 30 A O6 G 30 1_555 69.5 X G 29 A O6 G 29 1_555 Y K 202 F K K 1_555 X G 30 A O6 G 30 1_555 74.9 X G 25 A O6 G 25 1_555 Y K 202 F K K 1_555 Y G 65 B O6 G 17 1_555 100.5 X G 26 A O6 G 26 1_555 Y K 202 F K K 1_555 Y G 65 B O6 G 17 1_555 69.9 X G 29 A O6 G 29 1_555 Y K 202 F K K 1_555 Y G 65 B O6 G 17 1_555 152.4 X G 30 A O6 G 30 1_555 Y K 202 F K K 1_555 Y G 65 B O6 G 17 1_555 104.7 X G 25 A O6 G 25 1_555 Y K 202 F K K 1_555 Y G 68 B O6 G 20 1_555 80.1 X G 26 A O6 G 26 1_555 Y K 202 F K K 1_555 Y G 68 B O6 G 20 1_555 144.7 X G 29 A O6 G 29 1_555 Y K 202 F K K 1_555 Y G 68 B O6 G 20 1_555 118.2 X G 30 A O6 G 30 1_555 Y K 202 F K K 1_555 Y G 68 B O6 G 20 1_555 139.2 Y G 65 B O6 G 17 1_555 Y K 202 F K K 1_555 Y G 68 B O6 G 20 1_555 80.7 X G 25 A O6 G 25 1_555 Y K 202 F K K 1_555 Y G 70 B O6 G 22 1_555 157.2 X G 26 A O6 G 26 1_555 Y K 202 F K K 1_555 Y G 70 B O6 G 22 1_555 104.4 X G 29 A O6 G 29 1_555 Y K 202 F K K 1_555 Y G 70 B O6 G 22 1_555 133.8 X G 30 A O6 G 30 1_555 Y K 202 F K K 1_555 Y G 70 B O6 G 22 1_555 66.9 Y G 65 B O6 G 17 1_555 Y K 202 F K K 1_555 Y G 70 B O6 G 22 1_555 65.9 Y G 68 B O6 G 20 1_555 Y K 202 F K K 1_555 Y G 70 B O6 G 22 1_555 79.6 X G 25 A O6 G 25 1_555 Y K 202 F K K 1_555 Y G 72 B O6 G 24 1_555 109.4 X G 26 A O6 G 26 1_555 Y K 202 F K K 1_555 Y G 72 B O6 G 24 1_555 142.5 X G 29 A O6 G 29 1_555 Y K 202 F K K 1_555 Y G 72 B O6 G 24 1_555 72.2 X G 30 A O6 G 30 1_555 Y K 202 F K K 1_555 Y G 72 B O6 G 24 1_555 76.2 Y G 65 B O6 G 17 1_555 Y K 202 F K K 1_555 Y G 72 B O6 G 24 1_555 135.1 Y G 68 B O6 G 20 1_555 Y K 202 F K K 1_555 Y G 72 B O6 G 24 1_555 72.6 Y G 70 B O6 G 22 1_555 Y K 202 F K K 1_555 Y G 72 B O6 G 24 1_555 74.2 X G 26 A OP2 G 26 1_555 X MG 101 D MG MG 1_555 Y HOH 302 J O HOH 1_555 90.1 X G 26 A OP2 G 26 1_555 X MG 101 D MG MG 1_555 Y HOH 303 J O HOH 1_555 77.5 Y HOH 302 J O HOH 1_555 X MG 101 D MG MG 1_555 Y HOH 303 J O HOH 1_555 104.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 X N9 A 11 A N9 A 11 1 Y 1 X C8 A 11 A C8 A 11 1 Y 1 X N7 A 11 A N7 A 11 1 Y 1 X C5 A 11 A C5 A 11 1 Y 1 X C6 A 11 A C6 A 11 1 Y 1 X N6 A 11 A N6 A 11 1 Y 1 X N1 A 11 A N1 A 11 1 Y 1 X C2 A 11 A C2 A 11 1 Y 1 X N3 A 11 A N3 A 11 1 Y 1 X C4 A 11 A C4 A 11 1 Y 1 X N1 U 13 A N1 U 13 1 Y 1 X C2 U 13 A C2 U 13 1 Y 1 X O2 U 13 A O2 U 13 1 Y 1 X N3 U 13 A N3 U 13 1 Y 1 X C4 U 13 A C4 U 13 1 Y 1 X O4 U 13 A O4 U 13 1 Y 1 X C5 U 13 A C5 U 13 1 Y 1 X C6 U 13 A C6 U 13 1 Y 1 Y N1 U 58 B N1 U 10 1 Y 1 Y C2 U 58 B C2 U 10 1 Y 1 Y O2 U 58 B O2 U 10 1 Y 1 Y N3 U 58 B N3 U 10 1 Y 1 Y C4 U 58 B C4 U 10 1 Y 1 Y O4 U 58 B O4 U 10 1 Y 1 Y C5 U 58 B C5 U 10 1 Y 1 Y C6 U 58 B C6 U 10 1 Y 1 Y N1 U 62 B N1 U 14 1 Y 1 Y C2 U 62 B C2 U 14 1 Y 1 Y O2 U 62 B O2 U 14 1 Y 1 Y N3 U 62 B N3 U 14 1 Y 1 Y C4 U 62 B C4 U 14 1 Y 1 Y O4 U 62 B O4 U 14 1 Y 1 Y C5 U 62 B C5 U 14 1 Y 1 Y C6 U 62 B C6 U 14 1 Y 1 7.68 1.20 110.70 118.38 X X X O5' P OP2 G G G 19 19 19 N 1 -8.48 0.90 105.70 97.22 X X X O5' P OP2 G G G 20 20 20 N 1 -7.78 0.90 105.70 97.92 Y Y Y O5' P OP2 U U U 71 71 71 N 1 X X O3' P G A 10 11 -0.077 0.012 1.607 1.530 Y 263.470 108.6010 54.010 1.5100 0.0000 0.0000 -2.3100 0.0000 0.8000 0.9500 0.9430 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED 0.2566 0.2129 0.2154 2.8840 50.0000 477 8415 8892 5.4000 99.3400 33.0180 0.2990 RANDOM 1 THROUGHOUT 0.000 1.2130 0.3660 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD MASK 2.8840 50.0000 5 1972 135.28 99.10 68 1899 0 90 0.007 0.011 2194 0.003 0.020 905 1.732 1.345 3420 1.909 3.000 2197 0.096 0.200 369 0.010 0.020 1083 0.002 0.020 482 6.094 8.349 2194 0.5620 0.4680 2.9590 29 580 609 20 99.0200 2.88 50.0 4TS2 8415 1 23.9 5.1 99.6 data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.8.0071 data extraction PDB deposit@deposit.rcsb.org Dec. 10, 2013 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.14 Crystal structure of the Spinach RNA aptamer in complex with DFHBI, magnesium ions 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 6 N N 7 N N 7 N N covale 1.595 both X G 43 A O3' G 43 1_555 X CCC 44 A P CCC 44 1_555 covale 1.604 both Y U 94 B O3' U 46 1_555 Y CCC 101 B P CCC 47 1_555 covale 1.438 both A GLC 1 C C1 GLC 1_555 A FRU 2 C O2 FRU 1_555 metalc 2.902 X G 25 A O6 G 25 1_555 Y K 201 E K K 1_555 metalc 2.891 X G 25 A O6 G 25 1_555 Y K 202 F K K 1_555 metalc 2.905 X G 26 A OP2 G 26 1_555 X MG 101 D MG MG 1_555 metalc 2.665 X G 26 A O6 G 26 1_555 Y K 202 F K K 1_555 metalc 3.235 X G 29 A O6 G 29 1_555 Y K 201 E K K 1_555 metalc 3.067 X G 29 A O6 G 29 1_555 Y K 202 F K K 1_555 metalc 2.851 X G 30 A O6 G 30 1_555 Y K 202 F K K 1_555 metalc 2.359 X MG 101 D MG MG 1_555 Y HOH 302 J O HOH 1_555 metalc 2.093 X MG 101 D MG MG 1_555 Y HOH 303 J O HOH 1_555 metalc 2.807 Y G 65 B O6 G 17 1_555 Y K 202 F K K 1_555 metalc 2.961 Y G 68 B O6 G 20 1_555 Y K 201 E K K 1_555 metalc 2.542 Y G 68 B O6 G 20 1_555 Y K 202 F K K 1_555 metalc 2.721 Y G 70 B O6 G 22 1_555 Y K 202 F K K 1_555 metalc 2.962 Y G 72 B O6 G 24 1_555 Y K 201 E K K 1_555 metalc 2.925 Y G 72 B O6 G 24 1_555 Y K 202 F K K 1_555 metalc 2.875 Y U 73 B O2' U 25 1_555 Y K 201 E K K 1_555 metalc 2.715 Y U 73 B O2 U 25 1_555 Y K 201 E K K 1_555 metalc 2.877 Y G 74 B O6 G 26 1_555 Y K 201 E K K 1_555 hydrog WATSON-CRICK X G 1 A N1 G 1 1_555 Y CCC 101 B N3 CCC 47 1_555 hydrog WATSON-CRICK X G 1 A N2 G 1 1_555 Y CCC 101 B O2 CCC 47 1_555 hydrog WATSON-CRICK X G 1 A O6 G 1 1_555 Y CCC 101 B N4 CCC 47 1_555 hydrog WATSON-CRICK X A 2 A N1 A 2 1_555 Y U 94 B N3 U 46 1_555 hydrog WATSON-CRICK X A 2 A N6 A 2 1_555 Y U 94 B O4 U 46 1_555 hydrog WATSON-CRICK X C 3 A N3 C 3 1_555 Y G 93 B N1 G 45 1_555 hydrog WATSON-CRICK X C 3 A N4 C 3 1_555 Y G 93 B O6 G 45 1_555 hydrog WATSON-CRICK X C 3 A O2 C 3 1_555 Y G 93 B N2 G 45 1_555 hydrog WATSON-CRICK X G 4 A N1 G 4 1_555 Y C 92 B N3 C 44 1_555 hydrog WATSON-CRICK X G 4 A N2 G 4 1_555 Y C 92 B O2 C 44 1_555 hydrog WATSON-CRICK X G 4 A O6 G 4 1_555 Y C 92 B N4 C 44 1_555 hydrog WATSON-CRICK X C 5 A N3 C 5 1_555 Y G 91 B N1 G 43 1_555 hydrog WATSON-CRICK X C 5 A N4 C 5 1_555 Y G 91 B O6 G 43 1_555 hydrog WATSON-CRICK X C 5 A O2 C 5 1_555 Y G 91 B N2 G 43 1_555 hydrog WATSON-CRICK X G 6 A N1 G 6 1_555 Y C 90 B N3 C 42 1_555 hydrog WATSON-CRICK X G 6 A N2 G 6 1_555 Y C 90 B O2 C 42 1_555 hydrog WATSON-CRICK X G 6 A O6 G 6 1_555 Y C 90 B N4 C 42 1_555 hydrog WATSON-CRICK X A 7 A N1 A 7 1_555 Y U 89 B N3 U 41 1_555 hydrog WATSON-CRICK X A 7 A N6 A 7 1_555 Y U 89 B O4 U 41 1_555 hydrog WATSON-CRICK X C 8 A N3 C 8 1_555 Y G 88 B N1 G 40 1_555 hydrog WATSON-CRICK X C 8 A N4 C 8 1_555 Y G 88 B O6 G 40 1_555 hydrog WATSON-CRICK X C 8 A O2 C 8 1_555 Y G 88 B N2 G 40 1_555 hydrog WATSON-CRICK X C 9 A N3 C 9 1_555 Y G 87 B N1 G 39 1_555 hydrog WATSON-CRICK X C 9 A N4 C 9 1_555 Y G 87 B O6 G 39 1_555 hydrog WATSON-CRICK X C 9 A O2 C 9 1_555 Y G 87 B N2 G 39 1_555 hydrog TYPE_6_PAIR X G 10 A N1 G 10 1_555 X G 14 A O6 G 14 1_555 hydrog TYPE_6_PAIR X G 10 A N2 G 10 1_555 X G 14 A N7 G 14 1_555 hydrog G-C PAIR X G 10 A O6 G 10 1_555 Y C 85 B N4 C 37 1_555 hydrog WATSON-CRICK X A 12 A N1 A 12 1_555 Y U 86 B N3 U 38 1_555 hydrog WATSON-CRICK X A 12 A N6 A 12 1_555 Y U 86 B O4 U 38 1_555 hydrog WATSON-CRICK X G 14 A N1 G 14 1_555 Y C 85 B N3 C 37 1_555 hydrog WATSON-CRICK X G 14 A N2 G 14 1_555 Y C 85 B O2 C 37 1_555 hydrog WATSON-CRICK X G 14 A O6 G 14 1_555 Y C 85 B N4 C 37 1_555 hydrog WATSON-CRICK X A 17 A N1 A 17 1_555 Y U 82 B N3 U 34 1_555 hydrog WATSON-CRICK X A 17 A N6 A 17 1_555 Y U 82 B O4 U 34 1_555 hydrog A-A MISPAIR X A 17 A N3 A 17 1_555 Y A 84 B N6 A 36 1_555 hydrog U-G MISPAIR X U 18 A O2 U 18 1_555 Y G 81 B N1 G 33 1_555 hydrog WATSON-CRICK X G 19 A N1 G 19 1_555 Y C 80 B N3 C 32 1_555 hydrog WATSON-CRICK X G 19 A N2 G 19 1_555 Y C 80 B O2 C 32 1_555 hydrog WATSON-CRICK X G 19 A O6 G 19 1_555 Y C 80 B N4 C 32 1_555 hydrog WATSON-CRICK X G 20 A N1 G 20 1_555 Y C 79 B N3 C 31 1_555 hydrog WATSON-CRICK X G 20 A N2 G 20 1_555 Y C 79 B O2 C 31 1_555 hydrog WATSON-CRICK X G 20 A O6 G 20 1_555 Y C 79 B N4 C 31 1_555 hydrog TYPE_16_PAIR X U 21 A N3 U 21 1_555 Y U 78 B O2 U 30 1_555 hydrog TYPE_16_PAIR X U 21 A O4 U 21 1_555 Y U 78 B N3 U 30 1_555 hydrog WATSON-CRICK X G 22 A N1 G 22 1_555 Y C 77 B N3 C 29 1_555 hydrog WATSON-CRICK X G 22 A N2 G 22 1_555 Y C 77 B O2 C 29 1_555 hydrog WATSON-CRICK X G 22 A O6 G 22 1_555 Y C 77 B N4 C 29 1_555 hydrog TYPE_8_PAIR X A 23 A N1 A 23 1_555 Y G 76 B N1 G 28 1_555 hydrog TYPE_8_PAIR X A 23 A N6 A 23 1_555 Y G 76 B O6 G 28 1_555 hydrog A-A MISPAIR X A 24 A N1 A 24 1_555 Y A 75 B N6 A 27 1_555 hydrog TYPE_6_PAIR X G 25 A N1 G 25 1_555 X G 29 A O6 G 29 1_555 hydrog TYPE_6_PAIR X G 25 A N2 G 25 1_555 X G 29 A N7 G 29 1_555 hydrog TYPE_6_PAIR X G 25 A N7 G 25 1_555 Y G 68 B N2 G 20 1_555 hydrog TYPE_6_PAIR X G 25 A O6 G 25 1_555 Y G 68 B N1 G 20 1_555 hydrog TYPE_6_PAIR X G 26 A N1 G 26 1_555 X G 30 A O6 G 30 1_555 hydrog TYPE_6_PAIR X G 26 A N2 G 26 1_555 X G 30 A N7 G 30 1_555 hydrog TYPE_6_PAIR X G 26 A N7 G 26 1_555 Y G 65 B N2 G 17 1_555 hydrog TYPE_6_PAIR X G 26 A O6 G 26 1_555 Y G 65 B N1 G 17 1_555 hydrog C-U MISPAIR X C 28 A N4 C 28 1_555 Y U 66 B O4 U 18 1_555 hydrog WATSON-CRICK X C 28 A N3 C 28 1_555 Y G 74 B N1 G 26 1_555 hydrog WATSON-CRICK X C 28 A N4 C 28 1_555 Y G 74 B O6 G 26 1_555 hydrog WATSON-CRICK X C 28 A O2 C 28 1_555 Y G 74 B N2 G 26 1_555 hydrog TYPE_6_PAIR X G 29 A N1 G 29 1_555 Y G 72 B O6 G 24 1_555 hydrog TYPE_6_PAIR X G 29 A N2 G 29 1_555 Y G 72 B N7 G 24 1_555 hydrog TYPE_6_PAIR X G 30 A N1 G 30 1_555 Y G 70 B O6 G 22 1_555 hydrog TYPE_6_PAIR X G 30 A N2 G 30 1_555 Y G 70 B N7 G 22 1_555 hydrog WATSON-CRICK X U 32 A N3 U 32 1_555 Y A 64 B N1 A 16 1_555 hydrog WATSON-CRICK X U 32 A O4 U 32 1_555 Y A 64 B N6 A 16 1_555 hydrog WATSON-CRICK X C 33 A N3 C 33 1_555 Y G 63 B N1 G 15 1_555 hydrog WATSON-CRICK X C 33 A N4 C 33 1_555 Y G 63 B O6 G 15 1_555 hydrog WATSON-CRICK X C 33 A O2 C 33 1_555 Y G 63 B N2 G 15 1_555 hydrog WATSON-CRICK X C 34 A N3 C 34 1_555 Y G 60 B N1 G 12 1_555 hydrog WATSON-CRICK X C 34 A N4 C 34 1_555 Y G 60 B O6 G 12 1_555 hydrog WATSON-CRICK X C 34 A O2 C 34 1_555 Y G 60 B N2 G 12 1_555 hydrog WATSON-CRICK X A 35 A N1 A 35 1_555 Y U 59 B N3 U 11 1_555 hydrog WATSON-CRICK X A 35 A N6 A 35 1_555 Y U 59 B O4 U 11 1_555 hydrog WATSON-CRICK X G 36 A N1 G 36 1_555 Y C 57 B N3 C 9 1_555 hydrog WATSON-CRICK X G 36 A N2 G 36 1_555 Y C 57 B O2 C 9 1_555 hydrog WATSON-CRICK X G 36 A O6 G 36 1_555 Y C 57 B N4 C 9 1_555 hydrog WATSON-CRICK X C 37 A N3 C 37 1_555 Y G 56 B N1 G 8 1_555 hydrog WATSON-CRICK X C 37 A N4 C 37 1_555 Y G 56 B O6 G 8 1_555 hydrog WATSON-CRICK X C 37 A O2 C 37 1_555 Y G 56 B N2 G 8 1_555 hydrog C-G PAIR X C 38 A O2 C 38 1_555 Y G 55 B N2 G 7 1_555 hydrog WATSON-CRICK X G 39 A N1 G 39 1_555 Y C 54 B N3 C 6 1_555 hydrog WATSON-CRICK X G 39 A N2 G 39 1_555 Y C 54 B O2 C 6 1_555 hydrog WATSON-CRICK X G 39 A O6 G 39 1_555 Y C 54 B N4 C 6 1_555 hydrog WATSON-CRICK X G 40 A N1 G 40 1_555 Y C 53 B N3 C 5 1_555 hydrog WATSON-CRICK X G 40 A N2 G 40 1_555 Y C 53 B O2 C 5 1_555 hydrog WATSON-CRICK X G 40 A O6 G 40 1_555 Y C 53 B N4 C 5 1_555 hydrog WATSON-CRICK X C 41 A N3 C 41 1_555 Y G 52 B N1 G 4 1_555 hydrog WATSON-CRICK X C 41 A N4 C 41 1_555 Y G 52 B O6 G 4 1_555 hydrog WATSON-CRICK X C 41 A O2 C 41 1_555 Y G 52 B N2 G 4 1_555 hydrog WATSON-CRICK X U 42 A N3 U 42 1_555 Y A 51 B N1 A 3 1_555 hydrog WATSON-CRICK X U 42 A O4 U 42 1_555 Y A 51 B N6 A 3 1_555 hydrog WATSON-CRICK X G 43 A N1 G 43 1_555 Y C 50 B N3 C 2 1_555 hydrog WATSON-CRICK X G 43 A N2 G 43 1_555 Y C 50 B O2 C 2 1_555 hydrog WATSON-CRICK X G 43 A O6 G 43 1_555 Y C 50 B N4 C 2 1_555 hydrog HOOGSTEEN Y U 61 B N3 U 13 1_555 Y A 64 B N7 A 16 1_555 hydrog HOOGSTEEN Y U 61 B O4 U 13 1_555 Y A 64 B N6 A 16 1_555 hydrog TYPE_6_PAIR Y G 65 B N7 G 17 1_555 Y G 70 B N2 G 22 1_555 hydrog TYPE_6_PAIR Y G 65 B O6 G 17 1_555 Y G 70 B N1 G 22 1_555 hydrog U-U MISPAIR Y U 66 B O2 U 18 1_555 Y U 73 B N3 U 25 1_555 hydrog TYPE_6_PAIR Y G 68 B N7 G 20 1_555 Y G 72 B N2 G 24 1_555 hydrog TYPE_6_PAIR Y G 68 B O6 G 20 1_555 Y G 72 B N1 G 24 1_555 RNA aptamer, fluorescence, G-quadruplex, RNA 4TS2 PDB 1 1 4TS2 4TS2 PDB 2 1 4TS2 1 44 4TS2 1 44 4TS2 X 1 1 44 49 101 4TS2 49 101 4TS2 Y 2 1 47 19 P 21 21 21