0.010517
0.006072
0.000000
-0.000000
0.012144
0.000000
0.000000
-0.000000
0.012370
0.00000
0.00000
0.00000
Mohr, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
95.081
95.081
80.842
C21 H22 N6 O
374.439
N-tert-butyl-5-[3-(4-cyclopropylpyrimidin-2-yl)-1H-indol-5-yl]-1,3,4-oxadiazol-2-amine
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
C
N
3
N
C
N
4
N
C
N
5
N
N
Y
6
N
C
Y
7
N
N
Y
8
N
N
Y
9
N
C
Y
10
N
O
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
N
Y
20
N
C
Y
21
N
C
Y
22
N
C
Y
23
N
N
N
24
N
C
N
25
N
C
N
26
N
C
Y
27
N
C
Y
28
N
C
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
N
N
65
S
C
N
66
N
C
N
67
N
O
N
68
N
C
N
69
N
C
N
70
N
C
N
71
N
N
N
72
N
C
N
73
N
N
N
74
N
N
N
75
N
O
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
N
N
92
S
C
N
93
N
C
N
94
N
O
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
N
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
O
N
115
N
O
N
116
N
O
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
R
C
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
S
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
N
143
N
C
N
144
N
C
N
145
N
O
N
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
O
N
166
N
O
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
O
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
N
N
202
S
C
N
203
N
C
N
204
N
O
N
205
N
C
Y
206
N
C
Y
207
N
N
Y
208
N
C
Y
209
N
C
Y
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
S
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
N
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
S
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
R
C
N
373
N
O
N
374
N
C
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
N
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
N
423
N
O
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
N
441
N
C
N
442
N
C
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
Y
1
N
doub
Y
2
N
sing
Y
3
N
sing
Y
4
N
sing
Y
5
N
doub
Y
6
N
sing
Y
7
N
sing
Y
8
N
doub
Y
9
N
doub
N
10
N
sing
Y
11
N
doub
Y
12
N
sing
Y
13
N
doub
Y
14
N
sing
Y
15
N
sing
Y
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
Y
20
N
doub
Y
21
N
sing
Y
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
Y
26
N
doub
Y
27
N
doub
Y
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
Y
207
N
sing
Y
208
N
doub
Y
209
N
doub
N
210
N
sing
Y
211
N
sing
N
212
N
sing
Y
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
doub
Y
389
N
sing
Y
390
N
sing
N
391
N
sing
Y
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
Y
412
N
doub
Y
413
N
sing
Y
414
N
sing
N
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
1464-3405
25
847
855
10.1016/j.bmcl.2014.12.067
25599837
The discovery and optimization of aminooxadiazoles as potent Pim kinase inhibitors.
2015
10.2210/pdb4ty1/pdb
pdb_00004ty1
100
1
CCD
2013-11-24
RIGAKU SATURN 92
VariMax HF
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-E SUPERBRIGHT
33064.422
Serine/threonine-protein kinase pim-1
2.7.11.1
UNP residues 124-396
1
man
polymer
374.439
N-tert-butyl-5-[3-(4-cyclopropylpyrimidin-2-yl)-1H-indol-5-yl]-1,3,4-oxadiazol-2-amine
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
40
nat
water
no
no
MAHHHHHHDEVDGPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSG
FSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNR
GELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV
SSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH
MAHHHHHHDEVDGPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSG
FSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNR
GELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV
SSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
286
PIM1
9606
Homo sapiens
562
Escherichia coli
Biological sequence
3.19
61.45
VAPOR DIFFUSION, HANGING DROP
8.0
1.0M LiCl, 0.1M TRIS pH8.0, 20% PEG6K
277
citation
entity_src_gen
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_assembly_prop
pdbx_struct_oper_list
software
struct_keywords
chem_comp_atom
chem_comp_bond
database_2
refine_hist
repository
Initial release
Database references
Database references
Derived calculations
Other
Refinement description
Source and taxonomy
Structure summary
Data collection
Database references
Refinement description
1
0
2015-02-04
1
1
2015-02-18
1
2
2017-11-22
1
3
2023-12-27
_citation.journal_id_CSD
_entity_src_gen.pdbx_alt_source_flag
_pdbx_database_status.pdb_format_compatible
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_oper_list.symmetry_operation
_software.classification
_struct_keywords.text
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_refine_hist.number_atoms_solvent
_refine_hist.pdbx_number_atoms_ligand
_refine_hist.pdbx_number_atoms_nucleic_acid
_refine_hist.pdbx_number_atoms_protein
N
RCSB
Y
RCSB
2014-07-07
REL
REL
38W
N-tert-butyl-5-[3-(4-cyclopropylpyrimidin-2-yl)-1H-indol-5-yl]-1,3,4-oxadiazol-2-amine
GOL
GLYCEROL
HOH
water
UNL
1
2
38W
38W
401
A
GOL
2
3
GOL
GOL
402
A
HOH
19
4
HOH
HOH
501
A
HOH
14
4
HOH
HOH
502
A
HOH
35
4
HOH
HOH
503
A
HOH
34
4
HOH
HOH
504
A
HOH
16
4
HOH
HOH
505
A
HOH
22
4
HOH
HOH
506
A
HOH
4
4
HOH
HOH
507
A
HOH
15
4
HOH
HOH
508
A
HOH
1
4
HOH
HOH
509
A
HOH
2
4
HOH
HOH
510
A
HOH
3
4
HOH
HOH
511
A
HOH
5
4
HOH
HOH
512
A
HOH
6
4
HOH
HOH
513
A
HOH
7
4
HOH
HOH
514
A
HOH
8
4
HOH
HOH
515
A
HOH
9
4
HOH
HOH
516
A
HOH
10
4
HOH
HOH
517
A
HOH
11
4
HOH
HOH
518
A
HOH
12
4
HOH
HOH
519
A
HOH
13
4
HOH
HOH
520
A
HOH
17
4
HOH
HOH
521
A
HOH
18
4
HOH
HOH
522
A
HOH
20
4
HOH
HOH
523
A
HOH
21
4
HOH
HOH
524
A
HOH
23
4
HOH
HOH
525
A
HOH
24
4
HOH
HOH
526
A
HOH
25
4
HOH
HOH
527
A
HOH
26
4
HOH
HOH
528
A
HOH
27
4
HOH
HOH
529
A
HOH
28
4
HOH
HOH
530
A
HOH
29
4
HOH
HOH
531
A
HOH
30
4
HOH
HOH
532
A
HOH
31
4
HOH
HOH
533
A
HOH
32
4
HOH
HOH
534
A
HOH
33
4
HOH
HOH
535
A
HOH
36
4
HOH
HOH
536
A
HOH
37
4
HOH
HOH
537
A
HOH
38
4
HOH
HOH
538
A
HOH
39
4
HOH
HOH
539
A
HOH
40
4
HOH
HOH
540
A
n
1
20
A
n
2
21
A
n
3
22
A
n
4
23
A
n
5
24
A
n
6
25
A
n
7
26
A
n
8
27
A
n
9
28
A
n
10
29
A
n
11
30
A
n
12
31
A
n
13
32
A
PRO
33
n
14
PRO
33
A
LEU
34
n
15
LEU
34
A
GLU
35
n
16
GLU
35
A
SER
36
n
17
SER
36
A
GLN
37
n
18
GLN
37
A
TYR
38
n
19
TYR
38
A
GLN
39
n
20
GLN
39
A
VAL
40
n
21
VAL
40
A
GLY
41
n
22
GLY
41
A
PRO
42
n
23
PRO
42
A
LEU
43
n
24
LEU
43
A
LEU
44
n
25
LEU
44
A
GLY
45
n
26
GLY
45
A
SER
46
n
27
SER
46
A
GLY
47
n
28
GLY
47
A
GLY
48
n
29
GLY
48
A
PHE
49
n
30
PHE
49
A
GLY
50
n
31
GLY
50
A
SER
51
n
32
SER
51
A
VAL
52
n
33
VAL
52
A
TYR
53
n
34
TYR
53
A
SER
54
n
35
SER
54
A
GLY
55
n
36
GLY
55
A
ILE
56
n
37
ILE
56
A
ARG
57
n
38
ARG
57
A
VAL
58
n
39
VAL
58
A
SER
59
n
40
SER
59
A
ASP
60
n
41
ASP
60
A
ASN
61
n
42
ASN
61
A
LEU
62
n
43
LEU
62
A
PRO
63
n
44
PRO
63
A
VAL
64
n
45
VAL
64
A
ALA
65
n
46
ALA
65
A
ILE
66
n
47
ILE
66
A
LYS
67
n
48
LYS
67
A
HIS
68
n
49
HIS
68
A
VAL
69
n
50
VAL
69
A
GLU
70
n
51
GLU
70
A
LYS
71
n
52
LYS
71
A
ASP
72
n
53
ASP
72
A
ARG
73
n
54
ARG
73
A
ILE
74
n
55
ILE
74
A
SER
75
n
56
SER
75
A
ASP
76
n
57
ASP
76
A
TRP
77
n
58
TRP
77
A
GLY
78
n
59
GLY
78
A
GLU
79
n
60
GLU
79
A
LEU
80
n
61
LEU
80
A
PRO
81
n
62
PRO
81
A
ASN
82
n
63
ASN
82
A
GLY
83
n
64
GLY
83
A
THR
84
n
65
THR
84
A
ARG
85
n
66
ARG
85
A
VAL
86
n
67
VAL
86
A
PRO
87
n
68
PRO
87
A
MET
88
n
69
MET
88
A
GLU
89
n
70
GLU
89
A
VAL
90
n
71
VAL
90
A
VAL
91
n
72
VAL
91
A
LEU
92
n
73
LEU
92
A
LEU
93
n
74
LEU
93
A
LYS
94
n
75
LYS
94
A
LYS
95
n
76
LYS
95
A
VAL
96
n
77
VAL
96
A
SER
97
n
78
SER
97
A
SER
98
n
79
SER
98
A
GLY
99
n
80
GLY
99
A
PHE
100
n
81
PHE
100
A
SER
101
n
82
SER
101
A
GLY
102
n
83
GLY
102
A
VAL
103
n
84
VAL
103
A
ILE
104
n
85
ILE
104
A
ARG
105
n
86
ARG
105
A
LEU
106
n
87
LEU
106
A
LEU
107
n
88
LEU
107
A
ASP
108
n
89
ASP
108
A
TRP
109
n
90
TRP
109
A
PHE
110
n
91
PHE
110
A
GLU
111
n
92
GLU
111
A
ARG
112
n
93
ARG
112
A
PRO
113
n
94
PRO
113
A
ASP
114
n
95
ASP
114
A
SER
115
n
96
SER
115
A
PHE
116
n
97
PHE
116
A
VAL
117
n
98
VAL
117
A
LEU
118
n
99
LEU
118
A
ILE
119
n
100
ILE
119
A
LEU
120
n
101
LEU
120
A
GLU
121
n
102
GLU
121
A
ARG
122
n
103
ARG
122
A
PRO
123
n
104
PRO
123
A
GLU
124
n
105
GLU
124
A
PRO
125
n
106
PRO
125
A
VAL
126
n
107
VAL
126
A
GLN
127
n
108
GLN
127
A
ASP
128
n
109
ASP
128
A
LEU
129
n
110
LEU
129
A
PHE
130
n
111
PHE
130
A
ASP
131
n
112
ASP
131
A
PHE
132
n
113
PHE
132
A
ILE
133
n
114
ILE
133
A
THR
134
n
115
THR
134
A
GLU
135
n
116
GLU
135
A
ARG
136
n
117
ARG
136
A
GLY
137
n
118
GLY
137
A
ALA
138
n
119
ALA
138
A
LEU
139
n
120
LEU
139
A
GLN
140
n
121
GLN
140
A
GLU
141
n
122
GLU
141
A
GLU
142
n
123
GLU
142
A
LEU
143
n
124
LEU
143
A
ALA
144
n
125
ALA
144
A
ARG
145
n
126
ARG
145
A
SER
146
n
127
SER
146
A
PHE
147
n
128
PHE
147
A
PHE
148
n
129
PHE
148
A
TRP
149
n
130
TRP
149
A
GLN
150
n
131
GLN
150
A
VAL
151
n
132
VAL
151
A
LEU
152
n
133
LEU
152
A
GLU
153
n
134
GLU
153
A
ALA
154
n
135
ALA
154
A
VAL
155
n
136
VAL
155
A
ARG
156
n
137
ARG
156
A
HIS
157
n
138
HIS
157
A
CYS
158
n
139
CYS
158
A
HIS
159
n
140
HIS
159
A
ASN
160
n
141
ASN
160
A
CYS
161
n
142
CYS
161
A
GLY
162
n
143
GLY
162
A
VAL
163
n
144
VAL
163
A
LEU
164
n
145
LEU
164
A
HIS
165
n
146
HIS
165
A
ARG
166
n
147
ARG
166
A
ASP
167
n
148
ASP
167
A
ILE
168
n
149
ILE
168
A
LYS
169
n
150
LYS
169
A
ASP
170
n
151
ASP
170
A
GLU
171
n
152
GLU
171
A
ASN
172
n
153
ASN
172
A
ILE
173
n
154
ILE
173
A
LEU
174
n
155
LEU
174
A
ILE
175
n
156
ILE
175
A
ASP
176
n
157
ASP
176
A
LEU
177
n
158
LEU
177
A
ASN
178
n
159
ASN
178
A
ARG
179
n
160
ARG
179
A
GLY
180
n
161
GLY
180
A
GLU
181
n
162
GLU
181
A
LEU
182
n
163
LEU
182
A
LYS
183
n
164
LYS
183
A
LEU
184
n
165
LEU
184
A
ILE
185
n
166
ILE
185
A
ASP
186
n
167
ASP
186
A
PHE
187
n
168
PHE
187
A
GLY
188
n
169
GLY
188
A
SER
189
n
170
SER
189
A
GLY
190
n
171
GLY
190
A
ALA
191
n
172
ALA
191
A
LEU
192
n
173
LEU
192
A
LEU
193
n
174
LEU
193
A
LYS
194
n
175
LYS
194
A
ASP
195
n
176
ASP
195
A
THR
196
n
177
THR
196
A
VAL
197
n
178
VAL
197
A
TYR
198
n
179
TYR
198
A
THR
199
n
180
THR
199
A
ASP
200
n
181
ASP
200
A
PHE
201
n
182
PHE
201
A
ASP
202
n
183
ASP
202
A
GLY
203
n
184
GLY
203
A
THR
204
n
185
THR
204
A
ARG
205
n
186
ARG
205
A
VAL
206
n
187
VAL
206
A
TYR
207
n
188
TYR
207
A
SER
208
n
189
SER
208
A
PRO
209
n
190
PRO
209
A
PRO
210
n
191
PRO
210
A
GLU
211
n
192
GLU
211
A
TRP
212
n
193
TRP
212
A
ILE
213
n
194
ILE
213
A
ARG
214
n
195
ARG
214
A
TYR
215
n
196
TYR
215
A
HIS
216
n
197
HIS
216
A
ARG
217
n
198
ARG
217
A
TYR
218
n
199
TYR
218
A
HIS
219
n
200
HIS
219
A
GLY
220
n
201
GLY
220
A
ARG
221
n
202
ARG
221
A
SER
222
n
203
SER
222
A
ALA
223
n
204
ALA
223
A
ALA
224
n
205
ALA
224
A
VAL
225
n
206
VAL
225
A
TRP
226
n
207
TRP
226
A
SER
227
n
208
SER
227
A
LEU
228
n
209
LEU
228
A
GLY
229
n
210
GLY
229
A
ILE
230
n
211
ILE
230
A
LEU
231
n
212
LEU
231
A
LEU
232
n
213
LEU
232
A
TYR
233
n
214
TYR
233
A
ASP
234
n
215
ASP
234
A
MET
235
n
216
MET
235
A
VAL
236
n
217
VAL
236
A
CYS
237
n
218
CYS
237
A
GLY
238
n
219
GLY
238
A
ASP
239
n
220
ASP
239
A
ILE
240
n
221
ILE
240
A
PRO
241
n
222
PRO
241
A
PHE
242
n
223
PHE
242
A
GLU
243
n
224
GLU
243
A
HIS
244
n
225
HIS
244
A
ASP
245
n
226
ASP
245
A
GLU
246
n
227
GLU
246
A
GLU
247
n
228
GLU
247
A
ILE
248
n
229
ILE
248
A
ILE
249
n
230
ILE
249
A
ARG
250
n
231
ARG
250
A
GLY
251
n
232
GLY
251
A
GLN
252
n
233
GLN
252
A
VAL
253
n
234
VAL
253
A
PHE
254
n
235
PHE
254
A
PHE
255
n
236
PHE
255
A
ARG
256
n
237
ARG
256
A
GLN
257
n
238
GLN
257
A
ARG
258
n
239
ARG
258
A
VAL
259
n
240
VAL
259
A
SER
260
n
241
SER
260
A
SER
261
n
242
SER
261
A
GLU
262
n
243
GLU
262
A
CYS
263
n
244
CYS
263
A
GLN
264
n
245
GLN
264
A
HIS
265
n
246
HIS
265
A
LEU
266
n
247
LEU
266
A
ILE
267
n
248
ILE
267
A
ARG
268
n
249
ARG
268
A
TRP
269
n
250
TRP
269
A
CYS
270
n
251
CYS
270
A
LEU
271
n
252
LEU
271
A
ALA
272
n
253
ALA
272
A
LEU
273
n
254
LEU
273
A
ARG
274
n
255
ARG
274
A
PRO
275
n
256
PRO
275
A
SER
276
n
257
SER
276
A
ASP
277
n
258
ASP
277
A
ARG
278
n
259
ARG
278
A
PRO
279
n
260
PRO
279
A
THR
280
n
261
THR
280
A
PHE
281
n
262
PHE
281
A
GLU
282
n
263
GLU
282
A
GLU
283
n
264
GLU
283
A
ILE
284
n
265
ILE
284
A
GLN
285
n
266
GLN
285
A
ASN
286
n
267
ASN
286
A
HIS
287
n
268
HIS
287
A
PRO
288
n
269
PRO
288
A
TRP
289
n
270
TRP
289
A
MET
290
n
271
MET
290
A
GLN
291
n
272
GLN
291
A
ASP
292
n
273
ASP
292
A
VAL
293
n
274
VAL
293
A
LEU
294
n
275
LEU
294
A
LEU
295
n
276
LEU
295
A
PRO
296
n
277
PRO
296
A
GLN
297
n
278
GLN
297
A
GLU
298
n
279
GLU
298
A
THR
299
n
280
THR
299
A
ALA
300
n
281
ALA
300
A
GLU
301
n
282
GLU
301
A
ILE
302
n
283
ILE
302
A
HIS
303
n
284
HIS
303
A
LEU
304
n
285
LEU
304
A
HIS
305
n
286
HIS
305
A
author_and_software_defined_assembly
PISA
1
monomeric
210
1
12720
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
44
A
N
LEU
25
A
O
VAL
52
A
O
VAL
33
A
N
TYR
53
A
N
TYR
34
A
O
ILE
66
A
O
ILE
47
A
N
LYS
67
A
N
LYS
48
A
O
LEU
118
A
O
LEU
99
A
O
ILE
119
A
O
ILE
100
A
N
ASP
108
A
N
ASP
89
A
N
GLY
78
A
N
GLY
59
A
O
VAL
86
A
O
VAL
67
A
N
GLN
127
A
N
GLN
108
A
O
ILE
175
A
O
ILE
156
A
N
ASP
176
A
N
ASP
157
A
O
GLU
181
A
O
GLU
162
A
N
LEU
164
A
N
LEU
145
A
O
ALA
191
A
O
ALA
172
1
A
MET
20
A
MET
1
1
Y
1
A
ALA
21
A
ALA
2
1
Y
1
A
HIS
22
A
HIS
3
1
Y
1
A
HIS
23
A
HIS
4
1
Y
1
A
HIS
24
A
HIS
5
1
Y
1
A
HIS
25
A
HIS
6
1
Y
1
A
HIS
26
A
HIS
7
1
Y
1
A
HIS
27
A
HIS
8
1
Y
1
A
ASP
28
A
ASP
9
1
Y
1
A
GLU
29
A
GLU
10
1
Y
1
A
VAL
30
A
VAL
11
1
Y
1
A
ASP
31
A
ASP
12
1
Y
1
A
GLY
32
A
GLY
13
1
Y
1
A
PHE
49
82.03
2.67
1
A
SER
98
-172.59
-163.90
1
A
ASP
167
-150.27
40.36
1
A
ASP
186
66.19
78.61
49.747
0.23
0.23
0.00
0.23
0.00
-0.76
0.952
0.920
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23750
0.18100
0.18350
2.70
29.04
549
10915
4.8
99.65
10.125
0.200
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.575
0.300
0.80
0.80
1.20
MAXIMUM LIKELIHOOD WITH PHASES
MASK
2.70
29.04
40
2299
34
0
2225
0.011
0.019
2322
0.001
0.020
2174
1.409
1.967
3155
0.782
3.000
4988
6.018
5.000
272
34.256
23.136
118
16.021
15.000
380
14.019
15.000
21
0.078
0.200
333
0.005
0.021
2612
0.001
0.020
568
2.835
4.951
1091
2.836
4.948
1090
4.614
7.415
1362
4.612
7.418
1363
2.573
5.105
1231
2.572
5.105
1231
4.212
7.582
1791
6.757
38.374
2549
6.749
38.397
2544
0.380
0.333
2.770
38
808
20
99.88
2.70
29.04
4TY1
11535
0.075
1
9.6
2.6
99.7
0.457
2.70
2.80
2.28
1
2.6
99.8
refinement
REFMAC
5.7.0032
phasing
MOLREP
Crystal structure of human Pim-1 kinase in complex with an aminooxadiazole-indole inhibitor.
1
N
N
2
N
N
3
N
N
4
N
N
A
PRO
33
A
PRO
14
HELX_P
A
GLN
37
A
GLN
18
1
AA1
5
A
ASP
72
A
ASP
53
HELX_P
A
ILE
74
A
ILE
55
5
AA2
3
A
MET
88
A
MET
69
HELX_P
A
SER
97
A
SER
78
1
AA3
10
A
LEU
129
A
LEU
110
HELX_P
A
GLY
137
A
GLY
118
1
AA4
9
A
GLN
140
A
GLN
121
HELX_P
A
CYS
161
A
CYS
142
1
AA5
22
A
LYS
169
A
LYS
150
HELX_P
A
GLU
171
A
GLU
152
5
AA6
3
A
THR
204
A
THR
185
HELX_P
A
SER
208
A
SER
189
5
AA7
5
A
PRO
209
A
PRO
190
HELX_P
A
HIS
216
A
HIS
197
1
AA8
8
A
HIS
219
A
HIS
200
HELX_P
A
GLY
238
A
GLY
219
1
AA9
20
A
HIS
244
A
HIS
225
HELX_P
A
GLY
251
A
GLY
232
1
AB1
8
A
SER
260
A
SER
241
HELX_P
A
LEU
271
A
LEU
252
1
AB2
12
A
ARG
274
A
ARG
255
HELX_P
A
ARG
278
A
ARG
259
5
AB3
5
A
THR
280
A
THR
261
HELX_P
A
HIS
287
A
HIS
268
1
AB4
8
A
PRO
288
A
PRO
269
HELX_P
A
GLN
291
A
GLN
272
5
AB5
4
A
LEU
295
A
LEU
276
HELX_P
A
LEU
304
A
LEU
285
1
AB6
10
TRANSFERASE/TRANSFERASE INHIBITOR
TRANSFERASE, serine/threonine-protein kinase, TRANSFERASE-TRANSFERASE INHIBITOR complex
A
GLU
124
A
GLU
105
1
A
PRO
125
A
PRO
106
-4.99
PIM1_HUMAN
UNP
1
124
P11309
PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER
PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGAL
LKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLA
LRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH
124
396
4TY1
33
305
P11309
A
1
14
286
1
initiating methionine
MET
20
4TY1
A
P11309
UNP
1
1
expression tag
ALA
21
4TY1
A
P11309
UNP
2
1
expression tag
HIS
22
4TY1
A
P11309
UNP
3
1
expression tag
HIS
23
4TY1
A
P11309
UNP
4
1
expression tag
HIS
24
4TY1
A
P11309
UNP
5
1
expression tag
HIS
25
4TY1
A
P11309
UNP
6
1
expression tag
HIS
26
4TY1
A
P11309
UNP
7
1
expression tag
HIS
27
4TY1
A
P11309
UNP
8
1
expression tag
ASP
28
4TY1
A
P11309
UNP
9
1
expression tag
GLU
29
4TY1
A
P11309
UNP
10
1
expression tag
VAL
30
4TY1
A
P11309
UNP
11
1
expression tag
ASP
31
4TY1
A
P11309
UNP
12
1
expression tag
GLY
32
4TY1
A
P11309
UNP
13
5
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
38
A
TYR
19
A
GLY
47
A
GLY
28
A
GLY
50
A
GLY
31
A
ARG
57
A
ARG
38
A
PRO
63
A
PRO
44
A
GLU
70
A
GLU
51
A
SER
115
A
SER
96
A
GLU
121
A
GLU
102
A
LEU
106
A
LEU
87
A
GLU
111
A
GLU
92
A
TRP
77
A
TRP
58
A
GLU
79
A
GLU
60
A
ARG
85
A
ARG
66
A
PRO
87
A
PRO
68
A
VAL
126
A
VAL
107
A
ASP
128
A
ASP
109
A
ILE
173
A
ILE
154
A
ASP
176
A
ASP
157
A
GLU
181
A
GLU
162
A
LEU
184
A
LEU
165
A
VAL
163
A
VAL
144
A
LEU
164
A
LEU
145
A
ALA
191
A
ALA
172
A
LEU
192
A
LEU
173
binding site for residue 38W A 401
A
38W
401
Software
11
binding site for residue GOL A 402
A
GOL
402
Software
4
A
GLY
45
A
GLY
26
11
1_555
A
GLY
47
A
GLY
28
11
1_555
A
ALA
65
A
ALA
46
11
1_555
A
LYS
67
A
LYS
48
11
1_555
A
GLU
121
A
GLU
102
11
1_555
A
VAL
126
A
VAL
107
11
1_555
A
ASP
128
A
ASP
109
11
1_555
A
LEU
174
A
LEU
155
11
1_555
A
ILE
185
A
ILE
166
11
1_555
A
ASP
186
A
ASP
167
11
1_555
A
HOH
530
D
HOH
11
1_555
A
PRO
123
A
PRO
104
4
1_555
A
GLU
124
A
GLU
105
4
1_555
A
ASP
176
A
ASP
157
4
1_555
A
ARG
179
A
ARG
160
4
1_555
170
P 65