0.012580 0.007263 0.000000 0.000000 0.014526 0.000000 0.000000 0.000000 0.007272 0.00000 0.00000 0.00000 Harner, M.J. Chauder, B.A. Phan, J. Fesik, S.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 79.492 79.492 137.508 C10 H13 N3 O 191.230 5-amino-1,3,6-trimethyl-1,3-dihydro-2H-benzimidazol-2-one non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C Y 2 N C Y 3 N C Y 4 N C N 5 N N N 6 N C N 7 N C N 8 N O N 9 N N N 10 N C Y 11 N C Y 12 N C Y 13 N C N 14 N N N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N N N 29 S C N 30 N C N 31 N O N 32 N C N 33 N O N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N C N 48 N N N 49 N C N 50 N N N 51 N N N 52 N O N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N N N 69 S C N 70 N C N 71 N O N 72 N C N 73 N C N 74 N O N 75 N N N 76 N O N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N N N 86 S C N 87 N C N 88 N O N 89 N C N 90 N C N 91 N O N 92 N O N 93 N O N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N CL N 102 N N N 103 R C N 104 N C N 105 N O N 106 N C N 107 N S N 108 N O N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N N N 117 S C N 118 N C N 119 N O N 120 N C N 121 N C N 122 N C N 123 N O N 124 N N N 125 N O N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 S C N 138 N C N 139 N O N 140 N C N 141 N C N 142 N C N 143 N O N 144 N O N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N N N 156 N C N 157 N C N 158 N O N 159 N O N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N N N 166 S C N 167 N C N 168 N O N 169 N C Y 170 N C Y 171 N N Y 172 N C Y 173 N C Y 174 N N N 175 N O N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N O N 187 N H N 188 N H N 189 N N N 190 S C N 191 N C N 192 N O N 193 S C N 194 N C N 195 N C N 196 N C N 197 N O N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N N N 212 S C N 213 N C N 214 N O N 215 N C N 216 N C N 217 N C N 218 N C N 219 N O N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N N N 234 S C N 235 N C N 236 N O N 237 N C N 238 N C N 239 N C N 240 N C N 241 N N N 242 N O N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N N N 259 S C N 260 N C N 261 N O N 262 N C N 263 N C N 264 N S N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N N N 279 S C N 280 N C N 281 N O N 282 N C Y 283 N C Y 284 N C Y 285 N C Y 286 N C Y 287 N C Y 288 N C N 289 N O N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C N 306 N C N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C N 323 N O N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N S N 333 N O N 334 N O N 335 N O N 336 N O N 337 N N N 338 S C N 339 N C N 340 N O N 341 R C N 342 N O N 343 N C N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N C N 365 N O N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N N N 379 S C N 380 N C N 381 N O N 382 N C N 383 N C N 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 1 N sing Y 2 N doub Y 3 N sing Y 4 N sing N 5 N sing N 6 N sing Y 7 N doub N 8 N sing Y 9 N doub N 10 N sing Y 11 N sing N 12 N sing N 13 N sing N 14 N doub N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N doub N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N doub N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N doub N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing Y 168 N sing Y 169 N doub Y 170 N doub N 171 N sing Y 172 N sing N 173 N sing Y 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing Y 276 N doub Y 277 N sing Y 278 N sing N 279 N sing Y 280 N doub N 281 N sing Y 282 N doub N 283 N sing Y 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 57 9687 9692 10.1021/jm501035j 25314628 Fragment-Based Screening of the Bromodomain of ATAD2. 2014 10.2210/pdb4tyl/pdb pdb_00004tyl 100 1 CCD 2012-12-10 MARMOSAIC 300 mm CCD SINGLE WAVELENGTH M x-ray 1 0.98 1.0 21-ID-F APS 0.98 SYNCHROTRON APS BEAMLINE 21-ID-F 15453.514 ATPase family AAA domain-containing protein 2 3.6.1.3 UNP residues 981-1108 1 man polymer 96.063 SULFATE ION 1 nat non-polymer 35.453 CHLORIDE ION 4 syn non-polymer 191.230 5-amino-1,3,6-trimethyl-1,3-dihydro-2H-benzimidazol-2-one 1 syn non-polymer 18.015 water 251 nat water AAA nuclear coregulator cancer-associated protein,ANCCA no no SMQEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICS NALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR SMQEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICS NALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 130 ATAD2, L16, PRO2000 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) GOLD Biological sequence 4.06 69.69 VAPOR DIFFUSION, HANGING DROP 5.5 0.1 M Bis-Tris, pH 5.5, 2.5 M (NH4)2SO4. Ligand-free crystals grown at 277K, then soaked with ligand at 291K 291 citation entity_src_gen pdbx_audit_support pdbx_database_status pdbx_struct_oper_list pdbx_unobs_or_zero_occ_atoms pdbx_validate_close_contact pdbx_validate_symm_contact pdbx_audit_support chem_comp_atom chem_comp_bond database_2 pdbx_unobs_or_zero_occ_atoms refine_hist repository Initial release Database references Derived calculations Advisory Author supporting evidence Database references Derived calculations Other Source and taxonomy Author supporting evidence Advisory Data collection Database references Refinement description 1 0 2014-10-29 1 1 2014-12-03 1 2 2015-02-04 1 3 2017-09-06 1 4 2019-12-04 1 5 2023-12-27 _citation.journal_id_CSD _entity_src_gen.pdbx_alt_source_flag _pdbx_audit_support.funding_organization _pdbx_database_status.pdb_format_compatible _pdbx_struct_oper_list.symmetry_operation _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.dist _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_audit_support.funding_organization _database_2.pdbx_DOI _database_2.pdbx_database_accession United States National Institutes of Health/National Cancer Institute (NIH/NCI) DP1OD006933/DP1CA174419 N RCSB Y RCSB 2014-07-08 REL REL 1 A O HOH 1457 5.88 1 A O HOH 1545 6.35 1 A O HOH 1551 6.85 SO4 SULFATE ION CL CHLORIDE ION 39O 5-amino-1,3,6-trimethyl-1,3-dihydro-2H-benzimidazol-2-one HOH water SO4 1 2 SO4 SO4 1201 A CL 2 3 CL CL 1202 A DRG 3 4 39O 39O 1203 A CL 4 3 CL CL 1204 A CL 5 3 CL CL 1205 A CL 6 3 CL CL 1206 A HOH 157 5 HOH HOH 1301 A HOH 100 5 HOH HOH 1302 A HOH 184 5 HOH HOH 1303 A HOH 219 5 HOH HOH 1304 A HOH 126 5 HOH HOH 1305 A HOH 172 5 HOH HOH 1306 A HOH 104 5 HOH HOH 1307 A HOH 226 5 HOH HOH 1308 A HOH 89 5 HOH HOH 1309 A HOH 112 5 HOH HOH 1310 A HOH 68 5 HOH HOH 1311 A HOH 50 5 HOH HOH 1312 A HOH 22 5 HOH HOH 1313 A HOH 9 5 HOH HOH 1314 A HOH 245 5 HOH HOH 1315 A HOH 30 5 HOH HOH 1316 A HOH 137 5 HOH HOH 1317 A HOH 67 5 HOH HOH 1318 A HOH 200 5 HOH HOH 1319 A HOH 39 5 HOH HOH 1320 A HOH 7 5 HOH HOH 1321 A HOH 46 5 HOH HOH 1322 A HOH 207 5 HOH HOH 1323 A HOH 11 5 HOH HOH 1324 A HOH 63 5 HOH HOH 1325 A HOH 118 5 HOH HOH 1326 A HOH 52 5 HOH HOH 1327 A HOH 1 5 HOH HOH 1328 A HOH 51 5 HOH HOH 1329 A HOH 197 5 HOH HOH 1330 A HOH 17 5 HOH HOH 1331 A HOH 168 5 HOH HOH 1332 A HOH 12 5 HOH HOH 1333 A HOH 143 5 HOH HOH 1334 A HOH 107 5 HOH HOH 1335 A HOH 164 5 HOH HOH 1336 A HOH 110 5 HOH HOH 1337 A HOH 121 5 HOH HOH 1338 A HOH 44 5 HOH HOH 1339 A HOH 210 5 HOH HOH 1340 A HOH 244 5 HOH HOH 1341 A HOH 3 5 HOH HOH 1342 A HOH 125 5 HOH HOH 1343 A HOH 136 5 HOH HOH 1344 A HOH 76 5 HOH HOH 1345 A HOH 48 5 HOH HOH 1346 A HOH 59 5 HOH HOH 1347 A HOH 54 5 HOH HOH 1348 A HOH 29 5 HOH HOH 1349 A HOH 111 5 HOH HOH 1350 A HOH 74 5 HOH HOH 1351 A HOH 199 5 HOH HOH 1352 A HOH 42 5 HOH HOH 1353 A HOH 135 5 HOH HOH 1354 A HOH 243 5 HOH HOH 1355 A HOH 20 5 HOH HOH 1356 A HOH 216 5 HOH HOH 1357 A HOH 183 5 HOH HOH 1358 A HOH 196 5 HOH HOH 1359 A HOH 81 5 HOH HOH 1360 A HOH 202 5 HOH HOH 1361 A HOH 129 5 HOH HOH 1362 A HOH 193 5 HOH HOH 1363 A HOH 237 5 HOH HOH 1364 A HOH 167 5 HOH HOH 1365 A HOH 214 5 HOH HOH 1366 A HOH 138 5 HOH HOH 1367 A HOH 165 5 HOH HOH 1368 A HOH 235 5 HOH HOH 1369 A HOH 190 5 HOH HOH 1370 A HOH 225 5 HOH HOH 1371 A HOH 27 5 HOH HOH 1372 A HOH 93 5 HOH HOH 1373 A HOH 194 5 HOH HOH 1374 A HOH 142 5 HOH HOH 1375 A HOH 57 5 HOH HOH 1376 A HOH 247 5 HOH HOH 1377 A HOH 155 5 HOH HOH 1378 A HOH 72 5 HOH HOH 1379 A HOH 205 5 HOH HOH 1380 A HOH 109 5 HOH HOH 1381 A HOH 248 5 HOH HOH 1382 A HOH 105 5 HOH HOH 1383 A HOH 21 5 HOH HOH 1384 A HOH 203 5 HOH HOH 1385 A HOH 242 5 HOH HOH 1386 A HOH 170 5 HOH HOH 1387 A HOH 151 5 HOH HOH 1388 A HOH 229 5 HOH HOH 1389 A HOH 192 5 HOH HOH 1390 A HOH 169 5 HOH HOH 1391 A HOH 88 5 HOH HOH 1392 A HOH 117 5 HOH HOH 1393 A HOH 124 5 HOH HOH 1394 A HOH 220 5 HOH HOH 1395 A HOH 156 5 HOH HOH 1396 A HOH 213 5 HOH HOH 1397 A HOH 2 5 HOH HOH 1398 A HOH 4 5 HOH HOH 1399 A HOH 5 5 HOH HOH 1400 A HOH 6 5 HOH HOH 1401 A HOH 8 5 HOH HOH 1402 A HOH 10 5 HOH HOH 1403 A HOH 13 5 HOH HOH 1404 A HOH 14 5 HOH HOH 1405 A HOH 15 5 HOH HOH 1406 A HOH 16 5 HOH HOH 1407 A HOH 18 5 HOH HOH 1408 A HOH 19 5 HOH HOH 1409 A HOH 23 5 HOH HOH 1410 A HOH 24 5 HOH HOH 1411 A HOH 25 5 HOH HOH 1412 A HOH 26 5 HOH HOH 1413 A HOH 28 5 HOH HOH 1414 A HOH 31 5 HOH HOH 1415 A HOH 32 5 HOH HOH 1416 A HOH 33 5 HOH HOH 1417 A HOH 34 5 HOH HOH 1418 A HOH 35 5 HOH HOH 1419 A HOH 36 5 HOH HOH 1420 A HOH 37 5 HOH HOH 1421 A HOH 38 5 HOH HOH 1422 A HOH 40 5 HOH HOH 1423 A HOH 41 5 HOH HOH 1424 A HOH 43 5 HOH HOH 1425 A HOH 45 5 HOH HOH 1426 A HOH 47 5 HOH HOH 1427 A HOH 49 5 HOH HOH 1428 A HOH 53 5 HOH HOH 1429 A HOH 55 5 HOH HOH 1430 A HOH 56 5 HOH HOH 1431 A HOH 58 5 HOH HOH 1432 A HOH 60 5 HOH HOH 1433 A HOH 61 5 HOH HOH 1434 A HOH 62 5 HOH HOH 1435 A HOH 64 5 HOH HOH 1436 A HOH 65 5 HOH HOH 1437 A HOH 66 5 HOH HOH 1438 A HOH 69 5 HOH HOH 1439 A HOH 70 5 HOH HOH 1440 A HOH 71 5 HOH HOH 1441 A HOH 73 5 HOH HOH 1442 A HOH 75 5 HOH HOH 1443 A HOH 77 5 HOH HOH 1444 A HOH 78 5 HOH HOH 1445 A HOH 79 5 HOH HOH 1446 A HOH 80 5 HOH HOH 1447 A HOH 82 5 HOH HOH 1448 A HOH 83 5 HOH HOH 1449 A HOH 84 5 HOH HOH 1450 A HOH 85 5 HOH HOH 1451 A HOH 86 5 HOH HOH 1452 A HOH 87 5 HOH HOH 1453 A HOH 90 5 HOH HOH 1454 A HOH 91 5 HOH HOH 1455 A HOH 92 5 HOH HOH 1456 A HOH 94 5 HOH HOH 1457 A HOH 95 5 HOH HOH 1458 A HOH 96 5 HOH HOH 1459 A HOH 97 5 HOH HOH 1460 A HOH 98 5 HOH HOH 1461 A HOH 99 5 HOH HOH 1462 A HOH 101 5 HOH HOH 1463 A HOH 102 5 HOH HOH 1464 A HOH 103 5 HOH HOH 1465 A HOH 106 5 HOH HOH 1466 A HOH 108 5 HOH HOH 1467 A HOH 113 5 HOH HOH 1468 A HOH 114 5 HOH HOH 1469 A HOH 115 5 HOH HOH 1470 A HOH 116 5 HOH HOH 1471 A HOH 119 5 HOH HOH 1472 A HOH 120 5 HOH HOH 1473 A HOH 122 5 HOH HOH 1474 A HOH 123 5 HOH HOH 1475 A HOH 127 5 HOH HOH 1476 A HOH 128 5 HOH HOH 1477 A HOH 130 5 HOH HOH 1478 A HOH 131 5 HOH HOH 1479 A HOH 132 5 HOH HOH 1480 A HOH 133 5 HOH HOH 1481 A HOH 134 5 HOH HOH 1482 A HOH 139 5 HOH HOH 1483 A HOH 140 5 HOH HOH 1484 A HOH 141 5 HOH HOH 1485 A HOH 144 5 HOH HOH 1486 A HOH 145 5 HOH HOH 1487 A HOH 146 5 HOH HOH 1488 A HOH 147 5 HOH HOH 1489 A HOH 148 5 HOH HOH 1490 A HOH 149 5 HOH HOH 1491 A HOH 150 5 HOH HOH 1492 A HOH 152 5 HOH HOH 1493 A HOH 153 5 HOH HOH 1494 A HOH 154 5 HOH HOH 1495 A HOH 158 5 HOH HOH 1496 A HOH 159 5 HOH HOH 1497 A HOH 160 5 HOH HOH 1498 A HOH 161 5 HOH HOH 1499 A HOH 162 5 HOH HOH 1500 A HOH 163 5 HOH HOH 1501 A HOH 166 5 HOH HOH 1502 A HOH 171 5 HOH HOH 1503 A HOH 173 5 HOH HOH 1504 A HOH 174 5 HOH HOH 1505 A HOH 175 5 HOH HOH 1506 A HOH 176 5 HOH HOH 1507 A HOH 177 5 HOH HOH 1508 A HOH 178 5 HOH HOH 1509 A HOH 179 5 HOH HOH 1510 A HOH 180 5 HOH HOH 1511 A HOH 181 5 HOH HOH 1512 A HOH 182 5 HOH HOH 1513 A HOH 185 5 HOH HOH 1514 A HOH 186 5 HOH HOH 1515 A HOH 187 5 HOH HOH 1516 A HOH 188 5 HOH HOH 1517 A HOH 189 5 HOH HOH 1518 A HOH 195 5 HOH HOH 1519 A HOH 198 5 HOH HOH 1520 A HOH 201 5 HOH HOH 1521 A HOH 204 5 HOH HOH 1522 A HOH 206 5 HOH HOH 1523 A HOH 208 5 HOH HOH 1524 A HOH 209 5 HOH HOH 1525 A HOH 211 5 HOH HOH 1526 A HOH 212 5 HOH HOH 1527 A HOH 215 5 HOH HOH 1528 A HOH 217 5 HOH HOH 1529 A HOH 218 5 HOH HOH 1530 A HOH 221 5 HOH HOH 1531 A HOH 222 5 HOH HOH 1532 A HOH 223 5 HOH HOH 1533 A HOH 224 5 HOH HOH 1534 A HOH 227 5 HOH HOH 1535 A HOH 228 5 HOH HOH 1536 A HOH 230 5 HOH HOH 1537 A HOH 231 5 HOH HOH 1538 A HOH 232 5 HOH HOH 1539 A HOH 233 5 HOH HOH 1540 A HOH 234 5 HOH HOH 1541 A HOH 236 5 HOH HOH 1542 A HOH 238 5 HOH HOH 1543 A HOH 239 5 HOH HOH 1544 A HOH 240 5 HOH HOH 1545 A HOH 241 5 HOH HOH 1546 A HOH 246 5 HOH HOH 1547 A HOH 249 5 HOH HOH 1548 A HOH 250 5 HOH HOH 1549 A HOH 251 5 HOH HOH 1550 A HOH 252 5 HOH HOH 1551 A SER 979 n 1 SER 979 A MET 980 n 2 MET 980 A GLN 981 n 3 GLN 981 A GLU 982 n 4 GLU 982 A GLU 983 n 5 GLU 983 A ASP 984 n 6 ASP 984 A THR 985 n 7 THR 985 A PHE 986 n 8 PHE 986 A ARG 987 n 9 ARG 987 A GLU 988 n 10 GLU 988 A LEU 989 n 11 LEU 989 A ARG 990 n 12 ARG 990 A ILE 991 n 13 ILE 991 A PHE 992 n 14 PHE 992 A LEU 993 n 15 LEU 993 A ARG 994 n 16 ARG 994 A ASN 995 n 17 ASN 995 A VAL 996 n 18 VAL 996 A THR 997 n 19 THR 997 A HIS 998 n 20 HIS 998 A ARG 999 n 21 ARG 999 A LEU 1000 n 22 LEU 1000 A ALA 1001 n 23 ALA 1001 A ILE 1002 n 24 ILE 1002 A ASP 1003 n 25 ASP 1003 A LYS 1004 n 26 LYS 1004 A ARG 1005 n 27 ARG 1005 A PHE 1006 n 28 PHE 1006 A ARG 1007 n 29 ARG 1007 A VAL 1008 n 30 VAL 1008 A PHE 1009 n 31 PHE 1009 A THR 1010 n 32 THR 1010 A LYS 1011 n 33 LYS 1011 A PRO 1012 n 34 PRO 1012 A VAL 1013 n 35 VAL 1013 A ASP 1014 n 36 ASP 1014 A PRO 1015 n 37 PRO 1015 A ASP 1016 n 38 ASP 1016 A GLU 1017 n 39 GLU 1017 A VAL 1018 n 40 VAL 1018 A PRO 1019 n 41 PRO 1019 A ASP 1020 n 42 ASP 1020 A TYR 1021 n 43 TYR 1021 A VAL 1022 n 44 VAL 1022 A THR 1023 n 45 THR 1023 A VAL 1024 n 46 VAL 1024 A ILE 1025 n 47 ILE 1025 A LYS 1026 n 48 LYS 1026 A GLN 1027 n 49 GLN 1027 A PRO 1028 n 50 PRO 1028 A MET 1029 n 51 MET 1029 A ASP 1030 n 52 ASP 1030 A LEU 1031 n 53 LEU 1031 A SER 1032 n 54 SER 1032 A SER 1033 n 55 SER 1033 A VAL 1034 n 56 VAL 1034 A ILE 1035 n 57 ILE 1035 A SER 1036 n 58 SER 1036 A LYS 1037 n 59 LYS 1037 A ILE 1038 n 60 ILE 1038 A ASP 1039 n 61 ASP 1039 A LEU 1040 n 62 LEU 1040 A HIS 1041 n 63 HIS 1041 A LYS 1042 n 64 LYS 1042 A TYR 1043 n 65 TYR 1043 A LEU 1044 n 66 LEU 1044 A THR 1045 n 67 THR 1045 A VAL 1046 n 68 VAL 1046 A LYS 1047 n 69 LYS 1047 A ASP 1048 n 70 ASP 1048 A TYR 1049 n 71 TYR 1049 A LEU 1050 n 72 LEU 1050 A ARG 1051 n 73 ARG 1051 A ASP 1052 n 74 ASP 1052 A ILE 1053 n 75 ILE 1053 A ASP 1054 n 76 ASP 1054 A LEU 1055 n 77 LEU 1055 A ILE 1056 n 78 ILE 1056 A CYS 1057 n 79 CYS 1057 A SER 1058 n 80 SER 1058 A ASN 1059 n 81 ASN 1059 A ALA 1060 n 82 ALA 1060 A LEU 1061 n 83 LEU 1061 A GLU 1062 n 84 GLU 1062 A TYR 1063 n 85 TYR 1063 A ASN 1064 n 86 ASN 1064 A PRO 1065 n 87 PRO 1065 A ASP 1066 n 88 ASP 1066 A ARG 1067 n 89 ARG 1067 A ASP 1068 n 90 ASP 1068 A PRO 1069 n 91 PRO 1069 A GLY 1070 n 92 GLY 1070 A ASP 1071 n 93 ASP 1071 A ARG 1072 n 94 ARG 1072 A LEU 1073 n 95 LEU 1073 A ILE 1074 n 96 ILE 1074 A ARG 1075 n 97 ARG 1075 A HIS 1076 n 98 HIS 1076 A ARG 1077 n 99 ARG 1077 A ALA 1078 n 100 ALA 1078 A CYS 1079 n 101 CYS 1079 A ALA 1080 n 102 ALA 1080 A LEU 1081 n 103 LEU 1081 A ARG 1082 n 104 ARG 1082 A ASP 1083 n 105 ASP 1083 A THR 1084 n 106 THR 1084 A ALA 1085 n 107 ALA 1085 A TYR 1086 n 108 TYR 1086 A ALA 1087 n 109 ALA 1087 A ILE 1088 n 110 ILE 1088 A ILE 1089 n 111 ILE 1089 A LYS 1090 n 112 LYS 1090 A GLU 1091 n 113 GLU 1091 A GLU 1092 n 114 GLU 1092 A LEU 1093 n 115 LEU 1093 A ASP 1094 n 116 ASP 1094 A GLU 1095 n 117 GLU 1095 A ASP 1096 n 118 ASP 1096 A PHE 1097 n 119 PHE 1097 A GLU 1098 n 120 GLU 1098 A GLN 1099 n 121 GLN 1099 A LEU 1100 n 122 LEU 1100 A CYS 1101 n 123 CYS 1101 A GLU 1102 n 124 GLU 1102 A GLU 1103 n 125 GLU 1103 A ILE 1104 n 126 ILE 1104 A GLN 1105 n 127 GLN 1105 A GLU 1106 n 128 GLU 1106 A SER 1107 n 129 SER 1107 A ARG 1108 n 130 ARG 1108 A 4.2184 -0.2266 0.2648 1.8631 -0.5915 2.9055 -0.1521 -0.0523 0.2448 -0.0522 0.0600 -0.2635 -0.1600 0.4158 0.1130 0.1677 -0.0277 0.0128 0.1715 -0.0092 0.1766 refined 35.6869 -24.9951 -6.0805 X-RAY DIFFRACTION 4.1984 1.2912 0.0480 1.3891 0.2062 2.6951 0.2228 0.3242 0.8253 -0.1134 0.2744 0.3001 -0.3339 -1.1496 -0.4109 0.2002 0.0329 0.0117 0.4317 0.0680 0.3204 refined 15.3842 -26.4441 -0.6928 X-RAY DIFFRACTION 2.3201 0.2360 -0.6812 2.1759 -0.1340 3.6733 0.4452 -0.8137 0.9189 0.3482 -0.0736 0.1505 -0.9737 -0.2243 -0.3667 0.4002 0.0347 0.0974 0.5042 -0.1337 0.4548 refined 18.9789 -19.6353 13.9725 X-RAY DIFFRACTION 2.6307 -0.1751 -0.4681 2.4937 -0.1793 2.2380 -0.0242 -0.2538 0.2426 0.1745 0.1157 -0.2051 -0.4098 0.1998 -0.1061 0.2053 -0.0202 0.0173 0.2223 -0.0624 0.2421 refined 32.9008 -21.0783 2.2570 X-RAY DIFFRACTION 3.7978 0.6490 -2.7389 1.5244 -0.0992 3.1554 0.0427 -0.9709 -0.0769 0.1003 -0.1071 -0.1942 0.0105 0.4763 0.0657 0.1599 -0.0084 -0.0194 0.3835 0.0005 0.2071 refined 26.1859 -30.0262 8.7498 X-RAY DIFFRACTION 4.6178 3.4840 -0.0525 2.9504 0.2757 0.3124 0.0321 -0.3699 0.1611 0.4475 0.3483 0.5552 0.0422 0.1614 -0.2233 0.2536 -0.0101 0.0083 0.5406 0.0018 0.2826 refined 8.1470 -34.3412 16.1129 X-RAY DIFFRACTION 5.0255 0.0198 -2.3056 0.8303 -0.2224 1.7847 -0.1815 -0.4047 -0.1542 -0.0062 0.0240 -0.0589 0.2335 -0.0358 0.1938 0.1752 -0.0175 -0.0065 0.2803 0.0101 0.2130 refined 19.1470 -34.9672 2.6708 X-RAY DIFFRACTION 7.2129 -0.7742 2.0315 3.6623 -0.3856 6.9769 -0.0840 -1.0322 -0.1906 0.4200 0.1290 0.0023 -0.1259 0.2114 -0.0840 0.1945 0.0217 0.0178 0.3906 -0.0083 0.2642 refined 43.9620 -33.4731 -0.8296 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'A' and (resid 979 through 1001 ) X-RAY DIFFRACTION 2 chain 'A' and (resid 1002 through 1009 ) X-RAY DIFFRACTION 3 chain 'A' and (resid 1010 through 1030 ) X-RAY DIFFRACTION 4 chain 'A' and (resid 1031 through 1045 ) X-RAY DIFFRACTION 5 chain 'A' and (resid 1046 through 1063 ) X-RAY DIFFRACTION 6 chain 'A' and (resid 1064 through 1068 ) X-RAY DIFFRACTION 7 chain 'A' and (resid 1069 through 1092 ) X-RAY DIFFRACTION 8 chain 'A' and (resid 1093 through 1108 ) author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CL 1205 F CL 1 A HOH 1346 H HOH 1 A HOH 1395 H HOH 1 A CG MET 980 A CG MET 2 1 Y 1 A SD MET 980 A SD MET 2 1 Y 1 A CE MET 980 A CE MET 2 1 Y 1 A CD GLN 981 A CD GLN 3 1 Y 1 A OE1 GLN 981 A OE1 GLN 3 1 Y 1 A NE2 GLN 981 A NE2 GLN 3 1 Y 1 A CD GLU 983 A CD GLU 5 1 Y 1 A OE1 GLU 983 A OE1 GLU 5 1 Y 1 A OE2 GLU 983 A OE2 GLU 5 1 Y 1 A CD LYS 1004 A CD LYS 26 1 Y 1 A CE LYS 1004 A CE LYS 26 1 Y 1 A NZ LYS 1004 A NZ LYS 26 1 Y 1 A CE LYS 1011 A CE LYS 33 1 Y 1 A NZ LYS 1011 A NZ LYS 33 1 Y 1 A CG GLU 1017 A CG GLU 39 1 Y 1 A CD GLU 1017 A CD GLU 39 1 Y 1 A OE1 GLU 1017 A OE1 GLU 39 1 Y 1 A OE2 GLU 1017 A OE2 GLU 39 1 Y 1 A CA VAL 1046 A A CA VAL 68 0 Y 1 A CB VAL 1046 A A CB VAL 68 0 Y 1 A CG1 VAL 1046 A A CG1 VAL 68 0 Y 1 A CG2 VAL 1046 A A CG2 VAL 68 0 Y 1 A CE LYS 1047 A CE LYS 69 1 Y 1 A NZ LYS 1047 A NZ LYS 69 1 Y 1 A CB ARG 1067 B A CB ARG 89 0 Y 1 A CG ARG 1067 B A CG ARG 89 0 Y 1 A CD ARG 1067 B A CD ARG 89 0 Y 1 A NE ARG 1067 B A NE ARG 89 0 Y 1 A CZ ARG 1067 B A CZ ARG 89 0 Y 1 A NH1 ARG 1067 B A NH1 ARG 89 0 Y 1 A NH2 ARG 1067 B A NH2 ARG 89 0 Y 1 A A NH1 O ARG HOH 1067 1301 1.16 B 1 A A CZ O ARG HOH 1067 1301 1.90 B 1 A A O O HOH HOH 1330 1377 1.97 1 A A NH2 O ARG HOH 1067 1302 2.01 B 1 A A O O HOH HOH 1319 1385 2.05 1 A A O O HOH HOH 1355 1374 2.06 1 A A CL O CL HOH 1204 1366 2.09 1 A A CL O CL HOH 1202 1352 2.15 1 A A O O HOH HOH 1492 1526 2.16 1 A A OE1 O GLU HOH 1095 1543 2.16 1 A A CL O CL HOH 1202 1365 2.19 1 A A O O HOH HOH 1332 1387 2.19 1 A A O O HOH HOH 1326 1360 2.19 1 A A O O HOH HOH 1361 1377 2.02 1_555 8_545 1 A A O O HOH HOH 1340 1359 2.05 1_555 12_544 1 A A NE2 NH2 HIS ARG 1041 1067 2.12 B 1_555 6_554 1 A A O O HOH HOH 1341 1374 2.18 1_555 6_554 0.1972 0.1605 0.1637 1.850 38.183 2000 22634 8.84 99.87 0.18 1 FREE R-VALUE 1.34 18.59 0.90 1.11 ML FLAT BULK SOLVENT MODEL 1.850 38.183 251 1338 23 0 1064 0.018 1125 1.494 1530 12.290 431 0.084 173 0.008 198 0.2878 0.2387 1.8958 138 1426 99.00 0.2300 0.2000 1.9470 140 1444 100.00 0.2504 0.1907 2.0043 139 1434 100.00 0.1917 0.1731 2.0690 139 1443 100.00 0.1875 0.1634 2.1430 141 1448 100.00 0.2092 0.1622 2.2288 140 1440 100.00 0.2102 0.1578 2.3302 142 1475 100.00 0.2178 0.1673 2.4530 140 1445 100.00 0.2020 0.1723 2.6067 142 1466 100.00 0.2213 0.1697 2.8079 143 1475 100.00 0.1954 0.1741 3.0903 144 1481 100.00 0.1886 0.1507 3.5372 146 1502 100.00 0.1408 0.1233 4.4554 147 1518 100.00 0.2197 0.1668 38.1911 159 1637 99.00 1.85 38.183 4TYL 22647 0.063 0.083 1 20.37 20.37 23.4 99.9 0.86 1.85 1.92 3.61 1 23.1 99.5 refinement PHENIX (phenix.refine: 1.9_1692) Fragment-Based Screening of the Bromodomain of ATAD2 1 N N 2 N N 3 N N 4 N N 3 N N 3 N N 3 N N 5 N N A SER 979 A SER 1 HELX_P A ILE 1002 A ILE 24 1 AA1 24 A ASP 1003 A ASP 25 HELX_P A THR 1010 A THR 32 5 AA2 8 A ASP 1020 A ASP 42 HELX_P A ILE 1025 A ILE 47 1 AA3 6 A ASP 1030 A ASP 52 HELX_P A LEU 1040 A LEU 62 1 AA4 11 A THR 1045 A THR 67 HELX_P A ASN 1064 A ASN 86 1 AA5 20 A ASP 1068 A ASP 90 HELX_P A LEU 1093 A LEU 115 1 AA6 26 A ASP 1094 A ASP 116 HELX_P A SER 1107 A SER 129 1 AA7 14 Hydrolase/Hydrolase inhibitor Bromodomain, Hydrolase-Hydrolase inhibitor complex ATAD2_HUMAN UNP 1 981 Q6PL18 QEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNA LEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR 981 1108 4TYL 981 1108 Q6PL18 A 1 3 130 1 expression tag SER 979 4TYL A Q6PL18 UNP 1 1 expression tag MET 980 4TYL A Q6PL18 UNP 2 binding site for residue SO4 A 1201 A SO4 1201 Software 6 binding site for residue CL A 1202 A CL 1202 Software 3 binding site for residue 39O A 1203 A 39O 1203 Software 7 binding site for residue CL A 1204 A CL 1204 Software 1 binding site for residue CL A 1205 A CL 1205 Software 4 A ARG 987 A ARG 9 6 1_555 A ARG 990 A ARG 12 6 1_555 A ARG 994 A ARG 16 6 1_555 A ARG 1067 A ARG 89 6 6_554 A ARG 1072 A ARG 94 6 6_554 A HOH 1302 H HOH 6 6_554 A ARG 1077 A ARG 99 3 1_555 A HOH 1352 H HOH 3 1_555 A HOH 1365 H HOH 3 1_555 A VAL 1008 A VAL 30 7 1_555 A VAL 1013 A VAL 35 7 1_555 A TYR 1063 A TYR 85 7 1_555 A ASN 1064 A ASN 86 7 1_555 A ILE 1074 A ILE 96 7 1_555 A HOH 1407 H HOH 7 1_555 A HOH 1459 H HOH 7 1_555 A HOH 1366 H HOH 1 1_555 A HOH 1387 H HOH 4 1_555 A HOH 1387 H HOH 4 10_555 A HOH 1395 H HOH 4 10_555 A HOH 1395 H HOH 4 1_555 179 P 65 2 2