0.020596 0.011891 0.000000 0.000000 0.023782 0.000000 0.000000 0.000000 0.006496 0.000000 0.000000 0.000000 Fillenberg, S.B. Muller, Y.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.000 90.000 120.000 48.554 48.554 153.941 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N O N 76 N P N 77 N O N 78 N O N 79 N O N 80 N C N 81 R C N 82 N O N 83 S C N 84 N O N 85 N C N 86 R C Y 87 N N Y 88 N C Y 89 N N Y 90 N C Y 91 N C N 92 N N Y 93 N N Y 94 N C Y 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 N C N 122 R C N 123 N N N 124 N C N 125 N O N 126 N N N 127 N C N 128 N N N 129 N C N 130 N C N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N P N 147 N O N 148 N O N 149 N O N 150 N C N 151 R C N 152 N O N 153 S C N 154 N O N 155 N C N 156 R C Y 157 N N Y 158 N C Y 159 N N Y 160 N C N 161 N C N 162 N O N 163 N N N 164 N C N 165 N N N 166 N N Y 167 N C N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N P N 184 N O N 185 N O N 186 N O N 187 N C N 188 R C N 189 N O N 190 S C N 191 N O N 192 N C N 193 R C N 194 N N N 195 N C N 196 N O N 197 N N N 198 N C N 199 N O N 200 N C N 201 N C N 202 N C N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 N C N 223 N C N 224 N C N 225 N O N 226 N N N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N N N 239 S C N 240 N C N 241 N O N 242 N C N 243 N C N 244 N C N 245 N O N 246 N O N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N N N 258 N C N 259 N C N 260 N O N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C Y 272 N C Y 273 N N Y 274 N C Y 275 N C Y 276 N N N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N O N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 S C N 296 N C N 297 N C N 298 N C N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N N N 314 S C N 315 N C N 316 N O N 317 N C N 318 N C N 319 N C N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C N 340 N C N 341 N C N 342 N C N 343 N N N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 N C N 365 N C N 366 N S N 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N C N 409 N C N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C N 425 N O N 426 N O N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 R C N 439 N O N 440 N C N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N N N 452 S C N 453 N C N 454 N O N 455 N C Y 456 N C Y 457 N C Y 458 N C Y 459 N C Y 460 N C Y 461 N C N 462 N O N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N N N 476 S C N 477 N C N 478 N O N 479 N C N 480 N C N 481 N C N 482 N O N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing Y 93 N sing Y 94 N sing Y 95 N doub N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N doub N 102 N sing N 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing Y 166 N sing Y 167 N sing Y 168 N doub N 169 N sing Y 170 N sing N 171 N sing Y 172 N doub N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing Y 276 N sing Y 277 N doub Y 278 N doub N 279 N sing Y 280 N sing N 281 N sing Y 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing Y 384 N doub Y 385 N sing Y 386 N sing N 387 N sing Y 388 N doub N 389 N sing Y 390 N doub N 391 N sing Y 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N doub N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N doub N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N doub N 449 N sing N 450 N sing N 451 N sing N 452 N sing Y 453 N doub Y 454 N sing Y 455 N sing N 456 N sing Y 457 N doub N 458 N sing Y 459 N doub N 460 N sing Y 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N doub N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing UK Nucleic Acids Res. NARHAD 0389 1362-4962 43 1283 1296 10.1093/nar/gku1374 25564531 Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR. 2015 10.2210/pdb4u0y/pdb pdb_00004u0y 100 1 CCD 2010-10-08 RAYONIX MX-225 Si-111 crystal SINGLE WAVELENGTH M x-ray 1 0.91841 1.0 14.1 BESSY 0.91841 SYNCHROTRON BESSY BEAMLINE 14.1 Truncated form of YvoA; comprises only the DNA-binding domain (residues 1-75) 8965.283 HTH-type transcriptional repressor YvoA UNP residues 1-75 4 man polymer 15mer palindromic dsDNA construct; derived from the consensus sequence of the two native non-palindromic dre-site sequences upstream of nagAB-yvoA and nagP 4584.984 DNA (5'-D(P*GP*TP*GP*GP*TP*CP*TP*AP*GP*AP*CP*CP*AP*CP*T)-3') 2 syn polymer 35.453 CHLORIDE ION 2 syn non-polymer 18.015 water 287 nat water no no GSHMNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVS GSHMNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVS A,B,C,D polypeptide(L) no no (DG)(DT)(DG)(DG)(DT)(DC)(DT)(DA)(DG)(DA)(DC)(DC)(DA)(DC)(DT) GTGGTCTAGACCACT E,F polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 78 yvoA, BSU35030 224308 Bacillus subtilis subsp. subtilis str. 168 562 Escherichia coli Biological sequence 1 2.39 48.46 VAPOR DIFFUSION, SITTING DROP 6.5 50 mM sodium cacodylate, 200 mM sodium citrate, 10 mM MgCl2, 5 % (v/v) isopropanol 292.15 7.425 1 19 E 1 F 14 -0.144 E_DG1:DC14_F 1 12.082 -0.189 -0.086 -0.113 5.541 1 20 E 2 F 13 -0.206 E_DT2:DA13_F 2 -10.432 -0.091 0.369 -0.146 12.804 1 19 E 3 F 12 -1.043 E_DG3:DC12_F 3 -3.971 -0.075 0.447 -0.081 -11.730 1 19 E 4 F 11 0.093 E_DG4:DC11_F 4 -9.181 -0.385 -0.387 -0.220 1.574 1 20 E 5 F 10 2.586 E_DT5:DA10_F 5 -12.566 -0.188 0.079 -0.117 -2.520 1 19 E 6 F 9 0.032 E_DC6:DG9_F 6 -8.568 0.101 0.168 -0.048 -2.670 1 20 E 7 F 8 3.099 E_DT7:DA8_F 7 -8.794 -0.070 -0.336 -0.092 4.209 1 20 E 8 F 7 2.881 E_DA8:DT7_F 8 -8.632 0.266 -0.211 -0.081 2.212 1 19 E 9 F 6 0.789 E_DG9:DC6_F 9 -7.310 -0.138 0.113 -0.042 -0.478 1 20 E 10 F 5 4.897 E_DA10:DT5_F 10 -15.120 0.193 0.101 -0.046 12.499 1 19 E 11 F 4 2.777 E_DC11:DG4_F 11 -7.797 0.314 -0.526 -0.096 -10.340 1 19 E 12 F 3 0.372 E_DC12:DG3_F 12 -4.078 0.154 0.141 -0.141 -9.643 1 20 E 13 F 2 1.761 E_DA13:DT2_F 13 -12.457 0.029 0.134 -0.179 -9.416 1 19 E 14 F 1 0.772 E_DC14:DG1_F 14 16.606 0.142 -0.073 -0.086 3.628 32.383 E E 1 2 -11.517 F F 14 13 3.525 -6.377 -0.871 -0.581 EE_DG1DT2:DA13DC14_FF 1 -2.597 4.690 31.662 0.202 1.055 3.016 36.962 E E 2 3 5.430 F F 13 12 3.037 3.437 0.396 -0.193 EE_DT2DG3:DC12DA13_FF 2 0.939 -1.483 36.796 -0.734 -0.508 3.769 39.525 E E 3 4 3.726 F F 12 11 3.889 2.509 0.065 -1.305 EE_DG3DG4:DC11DC12_FF 3 6.077 -9.025 38.996 -2.277 0.746 2.781 32.262 E E 4 5 8.056 F F 11 10 2.969 4.448 0.290 -0.658 EE_DG4DT5:DA10DC11_FF 4 -4.738 8.583 31.617 -1.886 -1.269 3.464 34.613 E E 5 6 -0.785 F F 10 9 3.472 -0.467 0.326 -1.131 EE_DT5DC6:DG9DA10_FF 5 -1.894 3.184 34.560 -1.825 -0.858 2.924 25.846 E E 6 7 4.289 F F 9 8 3.256 1.903 -0.925 -0.862 EE_DC6DT7:DA8DG9_FF 6 5.418 -12.211 25.211 -2.434 3.510 3.491 29.784 E E 7 8 37.889 F F 8 7 3.547 18.156 -0.106 1.091 EE_DT7DA8:DT7DA8_FF 7 -1.253 2.615 23.677 -2.452 -0.110 3.177 24.753 E E 8 9 0.754 F F 7 6 3.386 0.322 0.977 -0.825 EE_DA8DG9:DC6DT7_FF 8 -3.988 9.342 24.433 -2.022 -3.501 3.417 35.464 E E 9 10 -0.579 F F 6 5 3.433 -0.353 -0.311 -1.092 EE_DG9DA10:DT5DC6_FF 9 2.305 -3.786 35.390 -1.739 0.865 2.717 31.623 E E 10 11 11.466 F F 5 4 2.963 6.181 -0.258 -0.572 EE_DA10DC11:DG4DT5_FF 10 5.277 -9.788 30.587 -2.061 1.336 3.736 39.785 E E 11 12 4.324 F F 4 3 3.835 2.931 -0.202 -1.174 EE_DC11DC12:DG3DG4_FF 11 -5.401 7.966 39.327 -2.121 -0.432 3.218 36.312 E E 12 13 9.459 F F 3 2 3.241 5.869 -0.419 0.006 EE_DC12DA13:DT2DG3_FF 12 -1.741 2.805 35.809 -0.805 0.431 3.544 34.118 E E 13 14 -14.402 F F 2 1 3.526 -8.369 0.826 -0.504 EE_DA13DC14:DG1DT2_FF 13 -0.035 0.061 33.105 0.599 -1.414 atom_site chem_comp_atom chem_comp_bond database_2 ndb_struct_na_base_pair ndb_struct_na_base_pair_step pdbx_audit_support pdbx_initial_refinement_model pdbx_nonpoly_scheme pdbx_validate_close_contact struct_site_gen repository Initial release Database references Database references Advisory Atomic model Author supporting evidence Data collection Database references Derived calculations Refinement description 1 0 2015-01-14 1 1 2015-01-21 1 2 2015-02-04 2 0 2023-12-20 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _database_2.pdbx_DOI _database_2.pdbx_database_accession _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.tip _pdbx_audit_support.funding_organization _pdbx_nonpoly_scheme.auth_seq_num _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.auth_seq_id_2 _struct_site_gen.auth_seq_id Germany German Research Foundation N RCSB Y PDBE 2014-07-14 REL REL CL CHLORIDE ION HOH water 224308 Bacillus subtilis subsp. subtilis str. 168 sample 1 15 2WV0 DNA-binding domain of PDB entry 2wv0 PDB experimental model CL 1 3 CL CL 101 B CL 1 3 CL CL 101 C HOH 168 4 HOH HOH 101 A HOH 188 4 HOH HOH 102 A HOH 204 4 HOH HOH 103 A HOH 281 4 HOH HOH 104 A HOH 180 4 HOH HOH 105 A HOH 62 4 HOH HOH 106 A HOH 238 4 HOH HOH 107 A HOH 256 4 HOH HOH 108 A HOH 83 4 HOH HOH 109 A HOH 101 4 HOH HOH 110 A HOH 202 4 HOH HOH 111 A HOH 28 4 HOH HOH 112 A HOH 130 4 HOH HOH 113 A HOH 37 4 HOH HOH 114 A HOH 16 4 HOH HOH 115 A HOH 105 4 HOH HOH 116 A HOH 158 4 HOH HOH 117 A HOH 183 4 HOH HOH 118 A HOH 167 4 HOH HOH 119 A HOH 103 4 HOH HOH 120 A HOH 65 4 HOH HOH 121 A HOH 199 4 HOH HOH 122 A HOH 60 4 HOH HOH 123 A HOH 209 4 HOH HOH 124 A HOH 112 4 HOH HOH 125 A HOH 252 4 HOH HOH 126 A HOH 39 4 HOH HOH 127 A HOH 72 4 HOH HOH 128 A HOH 156 4 HOH HOH 129 A HOH 178 4 HOH HOH 130 A HOH 261 4 HOH HOH 131 A HOH 200 4 HOH HOH 132 A HOH 122 4 HOH HOH 133 A HOH 160 4 HOH HOH 134 A HOH 95 4 HOH HOH 135 A HOH 111 4 HOH HOH 136 A HOH 121 4 HOH HOH 137 A HOH 186 4 HOH HOH 138 A HOH 77 4 HOH HOH 139 A HOH 49 4 HOH HOH 140 A HOH 58 4 HOH HOH 141 A HOH 288 4 HOH HOH 142 A HOH 219 4 HOH HOH 143 A HOH 262 4 HOH HOH 144 A HOH 157 4 HOH HOH 145 A HOH 173 4 HOH HOH 146 A HOH 221 4 HOH HOH 147 A HOH 226 4 HOH HOH 148 A HOH 148 4 HOH HOH 201 B HOH 218 4 HOH HOH 202 B HOH 134 4 HOH HOH 203 B HOH 97 4 HOH HOH 204 B HOH 271 4 HOH HOH 205 B HOH 22 4 HOH HOH 206 B HOH 86 4 HOH HOH 207 B HOH 224 4 HOH HOH 208 B HOH 237 4 HOH HOH 209 B HOH 165 4 HOH HOH 210 B HOH 266 4 HOH HOH 211 B HOH 109 4 HOH HOH 212 B HOH 53 4 HOH HOH 213 B HOH 57 4 HOH HOH 214 B HOH 215 4 HOH HOH 215 B HOH 36 4 HOH HOH 216 B HOH 98 4 HOH HOH 217 B HOH 151 4 HOH HOH 218 B HOH 117 4 HOH HOH 219 B HOH 68 4 HOH HOH 220 B HOH 76 4 HOH HOH 221 B HOH 192 4 HOH HOH 222 B HOH 147 4 HOH HOH 223 B HOH 106 4 HOH HOH 224 B HOH 34 4 HOH HOH 225 B HOH 23 4 HOH HOH 226 B HOH 236 4 HOH HOH 227 B HOH 85 4 HOH HOH 228 B HOH 43 4 HOH HOH 229 B HOH 115 4 HOH HOH 230 B HOH 216 4 HOH HOH 231 B HOH 133 4 HOH HOH 232 B HOH 129 4 HOH HOH 233 B HOH 14 4 HOH HOH 234 B HOH 172 4 HOH HOH 235 B HOH 175 4 HOH HOH 236 B HOH 54 4 HOH HOH 237 B HOH 189 4 HOH HOH 238 B HOH 197 4 HOH HOH 239 B HOH 211 4 HOH HOH 240 B HOH 250 4 HOH HOH 241 B HOH 280 4 HOH HOH 242 B HOH 114 4 HOH HOH 243 B HOH 228 4 HOH HOH 244 B HOH 205 4 HOH HOH 245 B HOH 227 4 HOH HOH 246 B HOH 126 4 HOH HOH 247 B HOH 29 4 HOH HOH 248 B HOH 214 4 HOH HOH 249 B HOH 260 4 HOH HOH 250 B HOH 283 4 HOH HOH 251 B HOH 245 4 HOH HOH 252 B HOH 289 4 HOH HOH 253 B HOH 164 4 HOH HOH 201 C HOH 229 4 HOH HOH 202 C HOH 174 4 HOH HOH 203 C HOH 230 4 HOH HOH 204 C HOH 146 4 HOH HOH 205 C HOH 241 4 HOH HOH 206 C HOH 203 4 HOH HOH 207 C HOH 213 4 HOH HOH 208 C HOH 99 4 HOH HOH 209 C HOH 234 4 HOH HOH 210 C HOH 152 4 HOH HOH 211 C HOH 196 4 HOH HOH 212 C HOH 90 4 HOH HOH 213 C HOH 142 4 HOH HOH 214 C HOH 104 4 HOH HOH 215 C HOH 286 4 HOH HOH 216 C HOH 181 4 HOH HOH 217 C HOH 136 4 HOH HOH 218 C HOH 161 4 HOH HOH 219 C HOH 169 4 HOH HOH 220 C HOH 193 4 HOH HOH 221 C HOH 79 4 HOH HOH 222 C HOH 233 4 HOH HOH 223 C HOH 35 4 HOH HOH 224 C HOH 223 4 HOH HOH 225 C HOH 210 4 HOH HOH 226 C HOH 206 4 HOH HOH 227 C HOH 253 4 HOH HOH 228 C HOH 84 4 HOH HOH 229 C HOH 138 4 HOH HOH 230 C HOH 124 4 HOH HOH 231 C HOH 89 4 HOH HOH 232 C HOH 208 4 HOH HOH 233 C HOH 171 4 HOH HOH 234 C HOH 254 4 HOH HOH 235 C HOH 52 4 HOH HOH 236 C HOH 70 4 HOH HOH 237 C HOH 225 4 HOH HOH 238 C HOH 61 4 HOH HOH 239 C HOH 232 4 HOH HOH 240 C HOH 187 4 HOH HOH 241 C HOH 59 4 HOH HOH 242 C HOH 153 4 HOH HOH 243 C HOH 272 4 HOH HOH 244 C HOH 201 4 HOH HOH 245 C HOH 170 4 HOH HOH 246 C HOH 269 4 HOH HOH 247 C HOH 258 4 HOH HOH 248 C HOH 276 4 HOH HOH 249 C HOH 282 4 HOH HOH 250 C HOH 287 4 HOH HOH 251 C HOH 265 4 HOH HOH 252 C HOH 149 4 HOH HOH 101 D HOH 182 4 HOH HOH 102 D HOH 108 4 HOH HOH 103 D HOH 274 4 HOH HOH 104 D HOH 244 4 HOH HOH 105 D HOH 110 4 HOH HOH 106 D HOH 127 4 HOH HOH 107 D HOH 128 4 HOH HOH 108 D HOH 67 4 HOH HOH 109 D HOH 240 4 HOH HOH 110 D HOH 235 4 HOH HOH 111 D HOH 7 4 HOH HOH 112 D HOH 125 4 HOH HOH 113 D HOH 74 4 HOH HOH 114 D HOH 143 4 HOH HOH 115 D HOH 177 4 HOH HOH 116 D HOH 31 4 HOH HOH 117 D HOH 273 4 HOH HOH 118 D HOH 155 4 HOH HOH 119 D HOH 163 4 HOH HOH 120 D HOH 166 4 HOH HOH 121 D HOH 11 4 HOH HOH 122 D HOH 51 4 HOH HOH 123 D HOH 140 4 HOH HOH 124 D HOH 19 4 HOH HOH 125 D HOH 264 4 HOH HOH 126 D HOH 145 4 HOH HOH 127 D HOH 284 4 HOH HOH 128 D HOH 50 4 HOH HOH 129 D HOH 107 4 HOH HOH 130 D HOH 285 4 HOH HOH 131 D HOH 176 4 HOH HOH 132 D HOH 137 4 HOH HOH 133 D HOH 135 4 HOH HOH 134 D HOH 6 4 HOH HOH 135 D HOH 278 4 HOH HOH 136 D HOH 123 4 HOH HOH 101 E HOH 162 4 HOH HOH 102 E HOH 277 4 HOH HOH 103 E HOH 118 4 HOH HOH 104 E HOH 24 4 HOH HOH 105 E HOH 33 4 HOH HOH 106 E HOH 44 4 HOH HOH 107 E HOH 13 4 HOH HOH 108 E HOH 46 4 HOH HOH 109 E HOH 8 4 HOH HOH 110 E HOH 116 4 HOH HOH 111 E HOH 63 4 HOH HOH 112 E HOH 212 4 HOH HOH 113 E HOH 257 4 HOH HOH 114 E HOH 73 4 HOH HOH 115 E HOH 194 4 HOH HOH 116 E HOH 18 4 HOH HOH 117 E HOH 132 4 HOH HOH 118 E HOH 195 4 HOH HOH 119 E HOH 154 4 HOH HOH 120 E HOH 26 4 HOH HOH 121 E HOH 255 4 HOH HOH 122 E HOH 25 4 HOH HOH 123 E HOH 248 4 HOH HOH 124 E HOH 45 4 HOH HOH 125 E HOH 48 4 HOH HOH 126 E HOH 190 4 HOH HOH 127 E HOH 15 4 HOH HOH 128 E HOH 3 4 HOH HOH 129 E HOH 27 4 HOH HOH 130 E HOH 21 4 HOH HOH 131 E HOH 32 4 HOH HOH 132 E HOH 4 4 HOH HOH 133 E HOH 87 4 HOH HOH 134 E HOH 75 4 HOH HOH 135 E HOH 222 4 HOH HOH 136 E HOH 207 4 HOH HOH 137 E HOH 81 4 HOH HOH 138 E HOH 263 4 HOH HOH 139 E HOH 100 4 HOH HOH 140 E HOH 131 4 HOH HOH 141 E HOH 150 4 HOH HOH 142 E HOH 94 4 HOH HOH 143 E HOH 80 4 HOH HOH 144 E HOH 91 4 HOH HOH 145 E HOH 96 4 HOH HOH 146 E HOH 139 4 HOH HOH 147 E HOH 251 4 HOH HOH 101 F HOH 267 4 HOH HOH 102 F HOH 242 4 HOH HOH 103 F HOH 239 4 HOH HOH 104 F HOH 249 4 HOH HOH 105 F HOH 47 4 HOH HOH 106 F HOH 10 4 HOH HOH 107 F HOH 184 4 HOH HOH 108 F HOH 185 4 HOH HOH 109 F HOH 66 4 HOH HOH 110 F HOH 141 4 HOH HOH 111 F HOH 78 4 HOH HOH 112 F HOH 9 4 HOH HOH 113 F HOH 42 4 HOH HOH 114 F HOH 82 4 HOH HOH 115 F HOH 93 4 HOH HOH 116 F HOH 92 4 HOH HOH 117 F HOH 120 4 HOH HOH 118 F HOH 243 4 HOH HOH 119 F HOH 198 4 HOH HOH 120 F HOH 12 4 HOH HOH 121 F HOH 38 4 HOH HOH 122 F HOH 247 4 HOH HOH 123 F HOH 41 4 HOH HOH 124 F HOH 279 4 HOH HOH 125 F HOH 55 4 HOH HOH 126 F HOH 20 4 HOH HOH 127 F HOH 159 4 HOH HOH 128 F HOH 30 4 HOH HOH 129 F HOH 71 4 HOH HOH 130 F HOH 5 4 HOH HOH 131 F HOH 17 4 HOH HOH 132 F HOH 69 4 HOH HOH 133 F HOH 56 4 HOH HOH 134 F HOH 64 4 HOH HOH 135 F HOH 40 4 HOH HOH 136 F HOH 259 4 HOH HOH 137 F HOH 144 4 HOH HOH 138 F HOH 191 4 HOH HOH 139 F HOH 102 4 HOH HOH 140 F HOH 179 4 HOH HOH 141 F HOH 217 4 HOH HOH 142 F HOH 119 4 HOH HOH 143 F HOH 220 4 HOH HOH 144 F HOH 246 4 HOH HOH 145 F HOH 268 4 HOH HOH 146 F HOH 88 4 HOH HOH 147 F HOH 231 4 HOH HOH 148 F HOH 113 4 HOH HOH 149 F HOH 270 4 HOH HOH 150 F HOH 275 4 HOH HOH 151 F n 1 -2 A n 2 -1 A n 3 0 A MET 1 n 4 MET 1 A ASN 2 n 5 ASN 2 A ILE 3 n 6 ILE 3 A ASN 4 n 7 ASN 4 A LYS 5 n 8 LYS 5 A GLN 6 n 9 GLN 6 A SER 7 n 10 SER 7 A PRO 8 n 11 PRO 8 A ILE 9 n 12 ILE 9 A PRO 10 n 13 PRO 10 A ILE 11 n 14 ILE 11 A TYR 12 n 15 TYR 12 A TYR 13 n 16 TYR 13 A GLN 14 n 17 GLN 14 A ILE 15 n 18 ILE 15 A MET 16 n 19 MET 16 A GLU 17 n 20 GLU 17 A GLN 18 n 21 GLN 18 A LEU 19 n 22 LEU 19 A LYS 20 n 23 LYS 20 A THR 21 n 24 THR 21 A GLN 22 n 25 GLN 22 A ILE 23 n 26 ILE 23 A LYS 24 n 27 LYS 24 A ASN 25 n 28 ASN 25 A GLY 26 n 29 GLY 26 A GLU 27 n 30 GLU 27 A LEU 28 n 31 LEU 28 A GLN 29 n 32 GLN 29 A PRO 30 n 33 PRO 30 A ASP 31 n 34 ASP 31 A MET 32 n 35 MET 32 A PRO 33 n 36 PRO 33 A LEU 34 n 37 LEU 34 A PRO 35 n 38 PRO 35 A SER 36 n 39 SER 36 A GLU 37 n 40 GLU 37 A ARG 38 n 41 ARG 38 A GLU 39 n 42 GLU 39 A TYR 40 n 43 TYR 40 A ALA 41 n 44 ALA 41 A GLU 42 n 45 GLU 42 A GLN 43 n 46 GLN 43 A PHE 44 n 47 PHE 44 A GLY 45 n 48 GLY 45 A ILE 46 n 49 ILE 46 A SER 47 n 50 SER 47 A ARG 48 n 51 ARG 48 A MET 49 n 52 MET 49 A THR 50 n 53 THR 50 A VAL 51 n 54 VAL 51 A ARG 52 n 55 ARG 52 A GLN 53 n 56 GLN 53 A ALA 54 n 57 ALA 54 A LEU 55 n 58 LEU 55 A SER 56 n 59 SER 56 A ASN 57 n 60 ASN 57 A LEU 58 n 61 LEU 58 A VAL 59 n 62 VAL 59 A ASN 60 n 63 ASN 60 A GLU 61 n 64 GLU 61 A GLY 62 n 65 GLY 62 A LEU 63 n 66 LEU 63 A LEU 64 n 67 LEU 64 A TYR 65 n 68 TYR 65 A ARG 66 n 69 ARG 66 A LEU 67 n 70 LEU 67 A LYS 68 n 71 LYS 68 A GLY 69 n 72 GLY 69 A ARG 70 n 73 ARG 70 A GLY 71 n 74 GLY 71 A THR 72 n 75 THR 72 A PHE 73 n 76 PHE 73 A VAL 74 n 77 VAL 74 A SER 75 n 78 SER 75 A n 1 -2 B n 2 -1 B n 3 0 B MET 1 n 4 MET 1 B ASN 2 n 5 ASN 2 B ILE 3 n 6 ILE 3 B ASN 4 n 7 ASN 4 B LYS 5 n 8 LYS 5 B GLN 6 n 9 GLN 6 B SER 7 n 10 SER 7 B PRO 8 n 11 PRO 8 B ILE 9 n 12 ILE 9 B PRO 10 n 13 PRO 10 B ILE 11 n 14 ILE 11 B TYR 12 n 15 TYR 12 B TYR 13 n 16 TYR 13 B GLN 14 n 17 GLN 14 B ILE 15 n 18 ILE 15 B MET 16 n 19 MET 16 B GLU 17 n 20 GLU 17 B GLN 18 n 21 GLN 18 B LEU 19 n 22 LEU 19 B LYS 20 n 23 LYS 20 B THR 21 n 24 THR 21 B GLN 22 n 25 GLN 22 B ILE 23 n 26 ILE 23 B LYS 24 n 27 LYS 24 B ASN 25 n 28 ASN 25 B GLY 26 n 29 GLY 26 B GLU 27 n 30 GLU 27 B LEU 28 n 31 LEU 28 B GLN 29 n 32 GLN 29 B PRO 30 n 33 PRO 30 B ASP 31 n 34 ASP 31 B MET 32 n 35 MET 32 B PRO 33 n 36 PRO 33 B LEU 34 n 37 LEU 34 B PRO 35 n 38 PRO 35 B SER 36 n 39 SER 36 B GLU 37 n 40 GLU 37 B ARG 38 n 41 ARG 38 B GLU 39 n 42 GLU 39 B TYR 40 n 43 TYR 40 B ALA 41 n 44 ALA 41 B GLU 42 n 45 GLU 42 B GLN 43 n 46 GLN 43 B PHE 44 n 47 PHE 44 B GLY 45 n 48 GLY 45 B ILE 46 n 49 ILE 46 B SER 47 n 50 SER 47 B ARG 48 n 51 ARG 48 B MET 49 n 52 MET 49 B THR 50 n 53 THR 50 B VAL 51 n 54 VAL 51 B ARG 52 n 55 ARG 52 B GLN 53 n 56 GLN 53 B ALA 54 n 57 ALA 54 B LEU 55 n 58 LEU 55 B SER 56 n 59 SER 56 B ASN 57 n 60 ASN 57 B LEU 58 n 61 LEU 58 B VAL 59 n 62 VAL 59 B ASN 60 n 63 ASN 60 B GLU 61 n 64 GLU 61 B GLY 62 n 65 GLY 62 B LEU 63 n 66 LEU 63 B LEU 64 n 67 LEU 64 B TYR 65 n 68 TYR 65 B ARG 66 n 69 ARG 66 B LEU 67 n 70 LEU 67 B LYS 68 n 71 LYS 68 B GLY 69 n 72 GLY 69 B ARG 70 n 73 ARG 70 B GLY 71 n 74 GLY 71 B THR 72 n 75 THR 72 B PHE 73 n 76 PHE 73 B VAL 74 n 77 VAL 74 B SER 75 n 78 SER 75 B n 1 -2 C n 2 -1 C n 3 0 C MET 1 n 4 MET 1 C ASN 2 n 5 ASN 2 C ILE 3 n 6 ILE 3 C ASN 4 n 7 ASN 4 C LYS 5 n 8 LYS 5 C GLN 6 n 9 GLN 6 C SER 7 n 10 SER 7 C PRO 8 n 11 PRO 8 C ILE 9 n 12 ILE 9 C PRO 10 n 13 PRO 10 C ILE 11 n 14 ILE 11 C TYR 12 n 15 TYR 12 C TYR 13 n 16 TYR 13 C GLN 14 n 17 GLN 14 C ILE 15 n 18 ILE 15 C MET 16 n 19 MET 16 C GLU 17 n 20 GLU 17 C GLN 18 n 21 GLN 18 C LEU 19 n 22 LEU 19 C LYS 20 n 23 LYS 20 C THR 21 n 24 THR 21 C GLN 22 n 25 GLN 22 C ILE 23 n 26 ILE 23 C LYS 24 n 27 LYS 24 C ASN 25 n 28 ASN 25 C GLY 26 n 29 GLY 26 C GLU 27 n 30 GLU 27 C LEU 28 n 31 LEU 28 C GLN 29 n 32 GLN 29 C PRO 30 n 33 PRO 30 C ASP 31 n 34 ASP 31 C MET 32 n 35 MET 32 C PRO 33 n 36 PRO 33 C LEU 34 n 37 LEU 34 C PRO 35 n 38 PRO 35 C SER 36 n 39 SER 36 C GLU 37 n 40 GLU 37 C ARG 38 n 41 ARG 38 C GLU 39 n 42 GLU 39 C TYR 40 n 43 TYR 40 C ALA 41 n 44 ALA 41 C GLU 42 n 45 GLU 42 C GLN 43 n 46 GLN 43 C PHE 44 n 47 PHE 44 C GLY 45 n 48 GLY 45 C ILE 46 n 49 ILE 46 C SER 47 n 50 SER 47 C ARG 48 n 51 ARG 48 C MET 49 n 52 MET 49 C THR 50 n 53 THR 50 C VAL 51 n 54 VAL 51 C ARG 52 n 55 ARG 52 C GLN 53 n 56 GLN 53 C ALA 54 n 57 ALA 54 C LEU 55 n 58 LEU 55 C SER 56 n 59 SER 56 C ASN 57 n 60 ASN 57 C LEU 58 n 61 LEU 58 C VAL 59 n 62 VAL 59 C ASN 60 n 63 ASN 60 C GLU 61 n 64 GLU 61 C GLY 62 n 65 GLY 62 C LEU 63 n 66 LEU 63 C LEU 64 n 67 LEU 64 C TYR 65 n 68 TYR 65 C ARG 66 n 69 ARG 66 C LEU 67 n 70 LEU 67 C LYS 68 n 71 LYS 68 C GLY 69 n 72 GLY 69 C ARG 70 n 73 ARG 70 C GLY 71 n 74 GLY 71 C THR 72 n 75 THR 72 C PHE 73 n 76 PHE 73 C VAL 74 n 77 VAL 74 C SER 75 n 78 SER 75 C n 1 -2 D n 2 -1 D n 3 0 D n 4 1 D ASN 2 n 5 ASN 2 D ILE 3 n 6 ILE 3 D ASN 4 n 7 ASN 4 D LYS 5 n 8 LYS 5 D GLN 6 n 9 GLN 6 D SER 7 n 10 SER 7 D PRO 8 n 11 PRO 8 D ILE 9 n 12 ILE 9 D PRO 10 n 13 PRO 10 D ILE 11 n 14 ILE 11 D TYR 12 n 15 TYR 12 D TYR 13 n 16 TYR 13 D GLN 14 n 17 GLN 14 D ILE 15 n 18 ILE 15 D MET 16 n 19 MET 16 D GLU 17 n 20 GLU 17 D GLN 18 n 21 GLN 18 D LEU 19 n 22 LEU 19 D LYS 20 n 23 LYS 20 D THR 21 n 24 THR 21 D GLN 22 n 25 GLN 22 D ILE 23 n 26 ILE 23 D LYS 24 n 27 LYS 24 D ASN 25 n 28 ASN 25 D GLY 26 n 29 GLY 26 D GLU 27 n 30 GLU 27 D LEU 28 n 31 LEU 28 D GLN 29 n 32 GLN 29 D PRO 30 n 33 PRO 30 D ASP 31 n 34 ASP 31 D MET 32 n 35 MET 32 D PRO 33 n 36 PRO 33 D LEU 34 n 37 LEU 34 D PRO 35 n 38 PRO 35 D SER 36 n 39 SER 36 D GLU 37 n 40 GLU 37 D ARG 38 n 41 ARG 38 D GLU 39 n 42 GLU 39 D TYR 40 n 43 TYR 40 D ALA 41 n 44 ALA 41 D GLU 42 n 45 GLU 42 D GLN 43 n 46 GLN 43 D PHE 44 n 47 PHE 44 D GLY 45 n 48 GLY 45 D ILE 46 n 49 ILE 46 D SER 47 n 50 SER 47 D ARG 48 n 51 ARG 48 D MET 49 n 52 MET 49 D THR 50 n 53 THR 50 D VAL 51 n 54 VAL 51 D ARG 52 n 55 ARG 52 D GLN 53 n 56 GLN 53 D ALA 54 n 57 ALA 54 D LEU 55 n 58 LEU 55 D SER 56 n 59 SER 56 D ASN 57 n 60 ASN 57 D LEU 58 n 61 LEU 58 D VAL 59 n 62 VAL 59 D ASN 60 n 63 ASN 60 D GLU 61 n 64 GLU 61 D GLY 62 n 65 GLY 62 D LEU 63 n 66 LEU 63 D LEU 64 n 67 LEU 64 D TYR 65 n 68 TYR 65 D ARG 66 n 69 ARG 66 D LEU 67 n 70 LEU 67 D LYS 68 n 71 LYS 68 D GLY 69 n 72 GLY 69 D ARG 70 n 73 ARG 70 D GLY 71 n 74 GLY 71 D THR 72 n 75 THR 72 D PHE 73 n 76 PHE 73 D VAL 74 n 77 VAL 74 D SER 75 n 78 SER 75 D DG 1 n 1 DG 1 E DT 2 n 2 DT 2 E DG 3 n 3 DG 3 E DG 4 n 4 DG 4 E DT 5 n 5 DT 5 E DC 6 n 6 DC 6 E DT 7 n 7 DT 7 E DA 8 n 8 DA 8 E DG 9 n 9 DG 9 E DA 10 n 10 DA 10 E DC 11 n 11 DC 11 E DC 12 n 12 DC 12 E DA 13 n 13 DA 13 E DC 14 n 14 DC 14 E DT 15 n 15 DT 15 E DG 1 n 1 DG 1 F DT 2 n 2 DT 2 F DG 3 n 3 DG 3 F DG 4 n 4 DG 4 F DT 5 n 5 DT 5 F DC 6 n 6 DC 6 F DT 7 n 7 DT 7 F DA 8 n 8 DA 8 F DG 9 n 9 DG 9 F DA 10 n 10 DA 10 F DC 11 n 11 DC 11 F DC 12 n 12 DC 12 F DA 13 n 13 DA 13 F DC 14 n 14 DC 14 F DT 15 n 15 DT 15 F author_and_software_defined_assembly PISA 6 Hexameric 8830 -68 18350 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 65 A N TYR 68 A O PHE 73 A O PHE 76 B N TYR 65 B N TYR 68 B O PHE 73 B O PHE 76 C N TYR 65 C N TYR 68 C O PHE 73 C O PHE 76 D N TYR 65 D N TYR 68 D O PHE 73 D O PHE 76 1 A GLY -2 A GLY 1 1 Y 1 A SER -1 A SER 2 1 Y 1 A HIS 0 A HIS 3 1 Y 1 B GLY -2 B GLY 1 1 Y 1 B SER -1 B SER 2 1 Y 1 B HIS 0 B HIS 3 1 Y 1 C GLY -2 C GLY 1 1 Y 1 C SER -1 C SER 2 1 Y 1 C HIS 0 C HIS 3 1 Y 1 D GLY -2 D GLY 1 1 Y 1 D SER -1 D SER 2 1 Y 1 D HIS 0 D HIS 3 1 Y 1 D MET 1 D MET 4 1 Y 1 A A O O HOH HOH 101 143 2.11 1 F F OP2 O DA HOH 8 101 2.13 1 E F O O HOH HOH 143 140 2.16 1 B B O O MET HOH 1 201 2.18 1 C C O O HOH HOH 203 214 2.19 1 3.17 0.50 120.30 123.47 B B B NE CZ NH1 ARG ARG ARG 48 48 48 N 1 -4.85 0.80 102.40 97.55 E E E C3' C2' C1' DG DG DG 1 1 1 N 1 4.27 0.30 108.30 112.57 E E E O4' C1' N9 DG DG DG 1 1 1 N 1 2.35 0.30 108.30 110.65 E E E O4' C1' N9 DA DA DA 8 8 8 N 1 4.71 0.30 108.30 113.01 F F F O4' C1' N9 DG DG DG 1 1 1 N 1 2.07 0.30 108.30 110.37 F F F O4' C1' N9 DA DA DA 8 8 8 N 1 A ASP 31 55.15 19.53 1 A PRO 35 -49.14 152.16 1 A ARG 70 -122.43 -54.32 1 B ARG 70 -124.01 -57.30 1 B ARG 70 -123.55 -58.28 1 C ASP 31 57.18 19.68 1 C ARG 70 -134.92 -47.92 1 D PRO 30 -39.65 132.75 1 D ARG 70 -132.86 -49.20 99.380 29.8537 13.230 0.2294 0.1783 0.1809 1.91 32.52 1558 29632 31190 5.0000 99.6700 1.000 0.450 0.8245 0.2300 Random selection 1 FREE R-VALUE 1.950 MOLECULAR REPLACEMENT 25.1400 0.9000 1.1100 DNA-binding domain of PDB entry 2wv0 ML FLAT BULK SOLVENT MODEL 1.91 32.52 287 3323 2 614 2420 0.007 3176 1.087 4407 0.046 482 0.005 472 19.676 1303 0.3129 0.2671 1.9758 139 2660 2799 11 98.0000 0.2900 0.2338 2.0464 143 2716 2859 11 100.0000 0.2585 0.2193 2.1283 140 2674 2814 11 100.0000 0.2877 0.2059 2.2252 143 2712 2855 11 100.0000 0.2816 0.2055 2.3425 141 2695 2836 11 100.0000 0.2341 0.1950 2.4892 142 2684 2826 11 100.0000 0.2387 0.1977 2.6813 144 2740 2884 11 100.0000 0.2567 0.1916 2.9510 140 2657 2797 11 100.0000 0.2488 0.1698 3.3776 142 2708 2850 11 100.0000 0.1951 0.1482 4.2539 141 2686 2827 11 100.0000 0.1788 0.1476 32.5286 143 2700 2843 11 100.0000 25.860 1.91 32.52 4U0Y 31230 0.085 1 10.61 3.8 99.8 0.87 1.91 1.98 1.90 1 3.7 98.7 data reduction XDS phasing PHASER refinement PHENIX (phenix.refine: 1.8.4_1496) Crystal structure of the DNA-binding domains of YvoA in complex with palindromic operator DNA 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N A PRO 10 A PRO 13 HELX_P A ASN 25 A ASN 28 1 AA1 16 A SER 36 A SER 39 HELX_P A GLY 45 A GLY 48 1 AA2 10 A SER 47 A SER 50 HELX_P A GLU 61 A GLU 64 1 AA3 15 B PRO 10 B PRO 13 HELX_P B GLY 26 B GLY 29 1 AA4 17 B SER 36 B SER 39 HELX_P B GLY 45 B GLY 48 1 AA5 10 B SER 47 B SER 50 HELX_P B GLU 61 B GLU 64 1 AA6 15 C PRO 10 C PRO 13 HELX_P C ASN 25 C ASN 28 1 AA7 16 C SER 36 C SER 39 HELX_P C GLY 45 C GLY 48 1 AA8 10 C SER 47 C SER 50 HELX_P C GLU 61 C GLU 64 1 AA9 15 D PRO 10 D PRO 13 HELX_P D ASN 25 D ASN 28 1 AB1 16 D SER 36 D SER 39 HELX_P D GLY 45 D GLY 48 1 AB2 10 D SER 47 D SER 50 HELX_P D GLU 61 D GLU 64 1 AB3 15 hydrog WATSON-CRICK E DG 1 E N1 DG 1 1_555 F DC 14 F N3 DC 14 1_555 hydrog WATSON-CRICK E DG 1 E N2 DG 1 1_555 F DC 14 F O2 DC 14 1_555 hydrog WATSON-CRICK E DG 1 E O6 DG 1 1_555 F DC 14 F N4 DC 14 1_555 hydrog WATSON-CRICK E DT 2 E N3 DT 2 1_555 F DA 13 F N1 DA 13 1_555 hydrog WATSON-CRICK E DT 2 E O4 DT 2 1_555 F DA 13 F N6 DA 13 1_555 hydrog WATSON-CRICK E DG 3 E N1 DG 3 1_555 F DC 12 F N3 DC 12 1_555 hydrog WATSON-CRICK E DG 3 E N2 DG 3 1_555 F DC 12 F O2 DC 12 1_555 hydrog WATSON-CRICK E DG 3 E O6 DG 3 1_555 F DC 12 F N4 DC 12 1_555 hydrog WATSON-CRICK E DG 4 E N1 DG 4 1_555 F DC 11 F N3 DC 11 1_555 hydrog WATSON-CRICK E DG 4 E N2 DG 4 1_555 F DC 11 F O2 DC 11 1_555 hydrog WATSON-CRICK E DG 4 E O6 DG 4 1_555 F DC 11 F N4 DC 11 1_555 hydrog WATSON-CRICK E DT 5 E N3 DT 5 1_555 F DA 10 F N1 DA 10 1_555 hydrog WATSON-CRICK E DT 5 E O4 DT 5 1_555 F DA 10 F N6 DA 10 1_555 hydrog WATSON-CRICK E DC 6 E N3 DC 6 1_555 F DG 9 F N1 DG 9 1_555 hydrog WATSON-CRICK E DC 6 E N4 DC 6 1_555 F DG 9 F O6 DG 9 1_555 hydrog WATSON-CRICK E DC 6 E O2 DC 6 1_555 F DG 9 F N2 DG 9 1_555 hydrog WATSON-CRICK E DT 7 E N3 DT 7 1_555 F DA 8 F N1 DA 8 1_555 hydrog WATSON-CRICK E DT 7 E O4 DT 7 1_555 F DA 8 F N6 DA 8 1_555 hydrog WATSON-CRICK E DA 8 E N1 DA 8 1_555 F DT 7 F N3 DT 7 1_555 hydrog WATSON-CRICK E DA 8 E N6 DA 8 1_555 F DT 7 F O4 DT 7 1_555 hydrog WATSON-CRICK E DG 9 E N1 DG 9 1_555 F DC 6 F N3 DC 6 1_555 hydrog WATSON-CRICK E DG 9 E N2 DG 9 1_555 F DC 6 F O2 DC 6 1_555 hydrog WATSON-CRICK E DG 9 E O6 DG 9 1_555 F DC 6 F N4 DC 6 1_555 hydrog WATSON-CRICK E DA 10 E N1 DA 10 1_555 F DT 5 F N3 DT 5 1_555 hydrog WATSON-CRICK E DA 10 E N6 DA 10 1_555 F DT 5 F O4 DT 5 1_555 hydrog WATSON-CRICK E DC 11 E N3 DC 11 1_555 F DG 4 F N1 DG 4 1_555 hydrog WATSON-CRICK E DC 11 E N4 DC 11 1_555 F DG 4 F O6 DG 4 1_555 hydrog WATSON-CRICK E DC 11 E O2 DC 11 1_555 F DG 4 F N2 DG 4 1_555 hydrog WATSON-CRICK E DC 12 E N3 DC 12 1_555 F DG 3 F N1 DG 3 1_555 hydrog WATSON-CRICK E DC 12 E N4 DC 12 1_555 F DG 3 F O6 DG 3 1_555 hydrog WATSON-CRICK E DC 12 E O2 DC 12 1_555 F DG 3 F N2 DG 3 1_555 hydrog WATSON-CRICK E DA 13 E N1 DA 13 1_555 F DT 2 F N3 DT 2 1_555 hydrog WATSON-CRICK E DA 13 E N6 DA 13 1_555 F DT 2 F O4 DT 2 1_555 hydrog WATSON-CRICK E DC 14 E N3 DC 14 1_555 F DG 1 F N1 DG 1 1_555 hydrog WATSON-CRICK E DC 14 E N4 DC 14 1_555 F DG 1 F O6 DG 1 1_555 hydrog WATSON-CRICK E DC 14 E O2 DC 14 1_555 F DG 1 F N2 DG 1 1_555 TRANSCRIPTION Transcription, Repressor, Bacterial transcription regulation, Transcription factor, GntR/HutC family, Winged helix-turn-helix motif, N-acetylglucosamine utilization, DNA-binding, Operator-binding YVOA_BACSU UNP 1 1 O34817 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVS 4U0Y PDB 2 1 4U0Y 1 75 4U0Y 1 75 O34817 A 1 4 78 1 75 4U0Y 1 75 O34817 B 1 4 78 1 75 4U0Y 1 75 O34817 C 1 4 78 1 75 4U0Y 1 75 O34817 D 1 4 78 1 15 4U0Y 1 15 4U0Y E 2 1 15 1 15 4U0Y 1 15 4U0Y F 2 1 15 1 expression tag GLY -2 4U0Y A O34817 UNP 1 1 expression tag SER -1 4U0Y A O34817 UNP 2 1 expression tag HIS 0 4U0Y A O34817 UNP 3 2 expression tag GLY -2 4U0Y B O34817 UNP 1 2 expression tag SER -1 4U0Y B O34817 UNP 2 2 expression tag HIS 0 4U0Y B O34817 UNP 3 3 expression tag GLY -2 4U0Y C O34817 UNP 1 3 expression tag SER -1 4U0Y C O34817 UNP 2 3 expression tag HIS 0 4U0Y C O34817 UNP 3 4 expression tag GLY -2 4U0Y D O34817 UNP 1 4 expression tag SER -1 4U0Y D O34817 UNP 2 4 expression tag HIS 0 4U0Y D O34817 UNP 3 2 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel A LEU 64 A LEU 67 A LEU 67 A LEU 70 A GLY 71 A GLY 74 A VAL 74 A VAL 77 B LEU 64 B LEU 67 B LEU 67 B LEU 70 B GLY 71 B GLY 74 B VAL 74 B VAL 77 C LEU 64 C LEU 67 C LEU 67 C LEU 70 C GLY 71 C GLY 74 C VAL 74 C VAL 77 D LEU 64 D LEU 67 D LEU 67 D LEU 70 D GLY 71 D GLY 74 D VAL 74 D VAL 77 binding site for residue CL B 101 B CL 101 Software 4 binding site for residue CL C 101 C CL 101 Software 4 A ARG 48 A ARG 51 4 1_555 B ARG 38 B ARG 41 4 1_555 E DC 11 E DC 11 4 1_555 E HOH 131 M HOH 4 1_555 C ARG 48 C ARG 51 4 1_555 D ARG 38 D ARG 41 4 1_555 F DC 11 F DC 11 4 1_555 F HOH 129 N HOH 4 1_555 144 P 31