0.006377
0.003682
0.000000
0.000000
0.007363
0.000000
0.000000
0.000000
0.010623
0.00000
0.00000
0.00000
Bonnefond, L.
Nureki, O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
156.820
156.820
94.132
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C10 H17 N6 O12 P3
506.196
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
N
N
22
N
P
N
23
N
O
N
24
N
O
N
25
N
O
N
26
N
O
N
27
N
C
N
28
R
C
N
29
N
O
N
30
S
C
N
31
N
O
N
32
R
C
N
33
N
O
N
34
R
C
Y
35
N
N
Y
36
N
C
Y
37
N
N
Y
38
N
C
Y
39
N
C
N
40
N
N
Y
41
N
N
Y
42
N
C
Y
43
N
N
Y
44
N
C
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
N
N
63
S
C
N
64
N
C
N
65
N
O
N
66
N
C
N
67
N
C
N
68
N
C
N
69
N
N
N
70
N
C
N
71
N
N
N
72
N
N
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
R
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
S
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
N
Y
192
N
C
Y
193
N
C
Y
194
N
N
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
S
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
N
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
S
N
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
R
C
N
354
N
O
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
N
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
sing
Y
50
N
doub
N
51
N
sing
Y
52
N
sing
Y
53
N
sing
Y
54
N
doub
N
55
N
sing
Y
56
N
doub
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
doub
N
61
N
sing
Y
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
NE
FEBS Lett.
FEBLAL
0165
0014-5793
588
4478
10.1016/J.FEBSLET.2014.10.019
25448989
Crystal Structures of Entamoeba Histolytica Lysyl-tRNA Synthetase Reveal Conformational Changes Upon Lysine Binding and a Specific Helix Bundle Domain.
2014
10.2210/pdb4upa/pdb
pdb_00004upa
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-12-17
ADSC Q270
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
AR-NE3A
Photon Factory
1.000
SYNCHROTRON
PHOTON FACTORY BEAMLINE AR-NE3A
87757.242
LYSINE--TRNA LIGASE
6.1.1.6
YES
1
man
polymer
506.196
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
1
syn
non-polymer
LYSYL-TRNA SYNTHETASE
no
no
MHHHHHHMLSKQLFLNRCKDVEEYQKAGHNPWPHKFNVSITVPEFIAKYSGLEKSQVSDDIVSVAGRVLSKRSSSSALMF
IDLHDSQTKLQIMLNKSAYENKEDFVSLTKMIYRGDICGFTGHPTRTKTGELSLIPISGMILSPCLHMLPSMHYGLGDQE
TRFRKRYLDLIVNPESVKNFVLRTKVVKAVRKYLDDKGFLEVETPILNTIPGGATARPFITHHNQLDIQMYMRIAPELYL
KELVVGGINRVYEIGRLFRNEGIDQTHNPEFTTCEFYMAYADYNDIMKMTEELLGNMVKDITGGSTKLEIKDRLMDINNE
EDIKMLEKFFKEPIPRPFNSAECSKVIEKHCTELNYYYDGNNEKAMKKLFADFVTEKKMVLDFTAPFKRISYVHALEEKF
GEKIPRPLDGPEALTFLKKQAIRFNAICAEPQTTARVMDKLFGDLIEVDLVQPTFVCDQPQLMSPLAKYHRSEPELTERF
ELFILKREIANAYTELNNPIVQRSNFEQQAKDKAAGDDEAQLVDEVFLDAIEHAFPPTGGWGLGIDRLAMLLADVDNIKE
VILFPTMRPEDELEKKAREAKEDAMVAQEKAATEEKGGKKVVKPKANKQQPVKEVLDGFQLEIRVGKIVEAGPHPNSEHL
LALKVDVGEEKPRSVVAGLAEHYKPEELLNQKATFVCNLKPSKLRGVASEAMILAATSLDGTKVKFCHPSADAAIGAQVI
PKEGKVTISAKKISIDVVGKMNLALKGGLVRTNDVPLIVKDTELTVTVDEVIDGTVR
MHHHHHHMLSKQLFLNRCKDVEEYQKAGHNPWPHKFNVSITVPEFIAKYSGLEKSQVSDDIVSVAGRVLSKRSSSSALMF
IDLHDSQTKLQIMLNKSAYENKEDFVSLTKMIYRGDICGFTGHPTRTKTGELSLIPISGMILSPCLHMLPSMHYGLGDQE
TRFRKRYLDLIVNPESVKNFVLRTKVVKAVRKYLDDKGFLEVETPILNTIPGGATARPFITHHNQLDIQMYMRIAPELYL
KELVVGGINRVYEIGRLFRNEGIDQTHNPEFTTCEFYMAYADYNDIMKMTEELLGNMVKDITGGSTKLEIKDRLMDINNE
EDIKMLEKFFKEPIPRPFNSAECSKVIEKHCTELNYYYDGNNEKAMKKLFADFVTEKKMVLDFTAPFKRISYVHALEEKF
GEKIPRPLDGPEALTFLKKQAIRFNAICAEPQTTARVMDKLFGDLIEVDLVQPTFVCDQPQLMSPLAKYHRSEPELTERF
ELFILKREIANAYTELNNPIVQRSNFEQQAKDKAAGDDEAQLVDEVFLDAIEHAFPPTGGWGLGIDRLAMLLADVDNIKE
VILFPTMRPEDELEKKAREAKEDAMVAQEKAATEEKGGKKVVKPKANKQQPVKEVLDGFQLEIRVGKIVEAGPHPNSEHL
LALKVDVGEEKPRSVVAGLAEHYKPEELLNQKATFVCNLKPSKLRGVASEAMILAATSLDGTKVKFCHPSADAAIGAQVI
PKEGKVTISAKKISIDVVGKMNLALKGGLVRTNDVPLIVKDTELTVTVDEVIDGTVR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
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n
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n
n
n
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n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
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n
n
n
n
n
n
n
n
n
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n
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n
n
n
n
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n
n
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n
n
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n
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n
n
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n
n
n
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n
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n
n
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n
n
n
n
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n
n
n
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n
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n
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n
n
n
n
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n
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n
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n
n
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n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
5759
ENTAMOEBA HISTOLYTICA
469008
ESCHERICHIA COLI
BL21(DE3)
C41(DE3) ROSETTA
PLASMID
PET-30 EK/LIC
1
3.8
67.6
NONE
7.5
50 MM HEPES PH 8.0, 50 MM NACL, 7.5% PEG 4000, 1.2 MM SPERMINE
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Database references
Database references
Data collection
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2014-10-29
1
1
2014-11-05
1
2
2014-11-26
1
3
2014-12-10
1
4
2015-02-11
1
5
2024-01-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF ENTAMOEBA HISTOLYTICA LYSYL-TRNA SYNTHETASE IN COMPLEX WITH LYSYL-ADENYLATE
CRYSTAL STRUCTURE OF ENTAMOEBA HISTOLYTICA LYSYL-TRNA SYNTHETASE APO FORM
CRYSTAL STRUCTURE OF ENTAMOEBA HISTOLYTICA LYSYL-TRNA SYNTHETASE IN COMPLEX WITH ATP
SHEET
DETERMINATION METHOD: DSSP
THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS
BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY
A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS
ARE IDENTICAL.
PDBE
Y
PDBE
2014-06-14
REL
REL
ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3BJU
PDB ENTRY 3BJU
PDB
experimental model
ANP
1584
2
ANP
ANP
1584
A
n
1
-7
A
n
2
-6
A
n
3
-5
A
n
4
-4
A
HIS
-3
n
5
HIS
-3
A
HIS
-2
n
6
HIS
-2
A
HIS
-1
n
7
HIS
-1
A
MET
0
n
8
MET
0
A
LEU
1
n
9
LEU
1
A
SER
2
n
10
SER
2
A
LYS
3
n
11
LYS
3
A
GLN
4
n
12
GLN
4
A
LEU
5
n
13
LEU
5
A
PHE
6
n
14
PHE
6
A
LEU
7
n
15
LEU
7
A
ASN
8
n
16
ASN
8
A
ARG
9
n
17
ARG
9
A
CYS
10
n
18
CYS
10
A
LYS
11
n
19
LYS
11
A
ASP
12
n
20
ASP
12
A
VAL
13
n
21
VAL
13
A
GLU
14
n
22
GLU
14
A
GLU
15
n
23
GLU
15
A
TYR
16
n
24
TYR
16
A
GLN
17
n
25
GLN
17
A
LYS
18
n
26
LYS
18
A
ALA
19
n
27
ALA
19
A
GLY
20
n
28
GLY
20
A
HIS
21
n
29
HIS
21
A
ASN
22
n
30
ASN
22
A
PRO
23
n
31
PRO
23
A
TRP
24
n
32
TRP
24
A
PRO
25
n
33
PRO
25
A
HIS
26
n
34
HIS
26
A
LYS
27
n
35
LYS
27
A
PHE
28
n
36
PHE
28
A
ASN
29
n
37
ASN
29
A
VAL
30
n
38
VAL
30
A
SER
31
n
39
SER
31
A
ILE
32
n
40
ILE
32
A
THR
33
n
41
THR
33
A
VAL
34
n
42
VAL
34
A
PRO
35
n
43
PRO
35
A
GLU
36
n
44
GLU
36
A
PHE
37
n
45
PHE
37
A
ILE
38
n
46
ILE
38
A
ALA
39
n
47
ALA
39
A
LYS
40
n
48
LYS
40
A
TYR
41
n
49
TYR
41
A
SER
42
n
50
SER
42
A
GLY
43
n
51
GLY
43
A
LEU
44
n
52
LEU
44
A
GLU
45
n
53
GLU
45
A
LYS
46
n
54
LYS
46
A
SER
47
n
55
SER
47
A
GLN
48
n
56
GLN
48
A
VAL
49
n
57
VAL
49
A
SER
50
n
58
SER
50
A
ASP
51
n
59
ASP
51
A
ASP
52
n
60
ASP
52
A
ILE
53
n
61
ILE
53
A
VAL
54
n
62
VAL
54
A
SER
55
n
63
SER
55
A
VAL
56
n
64
VAL
56
A
ALA
57
n
65
ALA
57
A
GLY
58
n
66
GLY
58
A
ARG
59
n
67
ARG
59
A
VAL
60
n
68
VAL
60
A
LEU
61
n
69
LEU
61
A
SER
62
n
70
SER
62
A
LYS
63
n
71
LYS
63
A
ARG
64
n
72
ARG
64
A
SER
65
n
73
SER
65
A
SER
66
n
74
SER
66
A
SER
67
n
75
SER
67
A
SER
68
n
76
SER
68
A
ALA
69
n
77
ALA
69
A
LEU
70
n
78
LEU
70
A
MET
71
n
79
MET
71
A
PHE
72
n
80
PHE
72
A
ILE
73
n
81
ILE
73
A
ASP
74
n
82
ASP
74
A
LEU
75
n
83
LEU
75
A
HIS
76
n
84
HIS
76
A
ASP
77
n
85
ASP
77
A
SER
78
n
86
SER
78
A
GLN
79
n
87
GLN
79
A
THR
80
n
88
THR
80
A
LYS
81
n
89
LYS
81
A
LEU
82
n
90
LEU
82
A
GLN
83
n
91
GLN
83
A
ILE
84
n
92
ILE
84
A
MET
85
n
93
MET
85
A
LEU
86
n
94
LEU
86
A
ASN
87
n
95
ASN
87
A
LYS
88
n
96
LYS
88
A
SER
89
n
97
SER
89
A
ALA
90
n
98
ALA
90
A
TYR
91
n
99
TYR
91
A
GLU
92
n
100
GLU
92
A
ASN
93
n
101
ASN
93
A
LYS
94
n
102
LYS
94
A
GLU
95
n
103
GLU
95
A
ASP
96
n
104
ASP
96
A
PHE
97
n
105
PHE
97
A
VAL
98
n
106
VAL
98
A
SER
99
n
107
SER
99
A
LEU
100
n
108
LEU
100
A
THR
101
n
109
THR
101
A
LYS
102
n
110
LYS
102
A
MET
103
n
111
MET
103
A
ILE
104
n
112
ILE
104
A
TYR
105
n
113
TYR
105
A
ARG
106
n
114
ARG
106
A
GLY
107
n
115
GLY
107
A
ASP
108
n
116
ASP
108
A
ILE
109
n
117
ILE
109
A
CYS
110
n
118
CYS
110
A
GLY
111
n
119
GLY
111
A
PHE
112
n
120
PHE
112
A
THR
113
n
121
THR
113
A
GLY
114
n
122
GLY
114
A
HIS
115
n
123
HIS
115
A
PRO
116
n
124
PRO
116
A
THR
117
n
125
THR
117
A
ARG
118
n
126
ARG
118
A
THR
119
n
127
THR
119
A
LYS
120
n
128
LYS
120
A
THR
121
n
129
THR
121
A
GLY
122
n
130
GLY
122
A
GLU
123
n
131
GLU
123
A
LEU
124
n
132
LEU
124
A
SER
125
n
133
SER
125
A
LEU
126
n
134
LEU
126
A
ILE
127
n
135
ILE
127
A
PRO
128
n
136
PRO
128
A
ILE
129
n
137
ILE
129
A
SER
130
n
138
SER
130
A
GLY
131
n
139
GLY
131
A
MET
132
n
140
MET
132
A
ILE
133
n
141
ILE
133
A
LEU
134
n
142
LEU
134
A
SER
135
n
143
SER
135
A
PRO
136
n
144
PRO
136
A
CYS
137
n
145
CYS
137
A
LEU
138
n
146
LEU
138
A
HIS
139
n
147
HIS
139
A
MET
140
n
148
MET
140
A
LEU
141
n
149
LEU
141
A
PRO
142
n
150
PRO
142
A
SER
143
n
151
SER
143
A
MET
144
n
152
MET
144
A
HIS
145
n
153
HIS
145
A
TYR
146
n
154
TYR
146
A
GLY
147
n
155
GLY
147
A
LEU
148
n
156
LEU
148
A
GLY
149
n
157
GLY
149
A
ASP
150
n
158
ASP
150
A
GLN
151
n
159
GLN
151
A
GLU
152
n
160
GLU
152
A
THR
153
n
161
THR
153
A
ARG
154
n
162
ARG
154
A
PHE
155
n
163
PHE
155
A
ARG
156
n
164
ARG
156
A
LYS
157
n
165
LYS
157
A
ARG
158
n
166
ARG
158
A
TYR
159
n
167
TYR
159
A
LEU
160
n
168
LEU
160
A
ASP
161
n
169
ASP
161
A
LEU
162
n
170
LEU
162
A
ILE
163
n
171
ILE
163
A
VAL
164
n
172
VAL
164
A
ASN
165
n
173
ASN
165
A
PRO
166
n
174
PRO
166
A
GLU
167
n
175
GLU
167
A
SER
168
n
176
SER
168
A
VAL
169
n
177
VAL
169
A
LYS
170
n
178
LYS
170
A
ASN
171
n
179
ASN
171
A
PHE
172
n
180
PHE
172
A
VAL
173
n
181
VAL
173
A
LEU
174
n
182
LEU
174
A
ARG
175
n
183
ARG
175
A
THR
176
n
184
THR
176
A
LYS
177
n
185
LYS
177
A
VAL
178
n
186
VAL
178
A
VAL
179
n
187
VAL
179
A
LYS
180
n
188
LYS
180
A
ALA
181
n
189
ALA
181
A
VAL
182
n
190
VAL
182
A
ARG
183
n
191
ARG
183
A
LYS
184
n
192
LYS
184
A
TYR
185
n
193
TYR
185
A
LEU
186
n
194
LEU
186
A
ASP
187
n
195
ASP
187
A
ASP
188
n
196
ASP
188
A
LYS
189
n
197
LYS
189
A
GLY
190
n
198
GLY
190
A
PHE
191
n
199
PHE
191
A
LEU
192
n
200
LEU
192
A
GLU
193
n
201
GLU
193
A
VAL
194
n
202
VAL
194
A
GLU
195
n
203
GLU
195
A
THR
196
n
204
THR
196
A
PRO
197
n
205
PRO
197
A
ILE
198
n
206
ILE
198
A
LEU
199
n
207
LEU
199
A
ASN
200
n
208
ASN
200
A
THR
201
n
209
THR
201
A
ILE
202
n
210
ILE
202
A
PRO
203
n
211
PRO
203
A
GLY
204
n
212
GLY
204
A
GLY
205
n
213
GLY
205
A
ALA
206
n
214
ALA
206
A
THR
207
n
215
THR
207
A
ALA
208
n
216
ALA
208
A
ARG
209
n
217
ARG
209
A
PRO
210
n
218
PRO
210
A
PHE
211
n
219
PHE
211
A
ILE
212
n
220
ILE
212
A
THR
213
n
221
THR
213
A
HIS
214
n
222
HIS
214
A
HIS
215
n
223
HIS
215
A
ASN
216
n
224
ASN
216
A
GLN
217
n
225
GLN
217
A
LEU
218
n
226
LEU
218
A
ASP
219
n
227
ASP
219
A
ILE
220
n
228
ILE
220
A
GLN
221
n
229
GLN
221
A
MET
222
n
230
MET
222
A
TYR
223
n
231
TYR
223
A
MET
224
n
232
MET
224
A
ARG
225
n
233
ARG
225
A
ILE
226
n
234
ILE
226
A
ALA
227
n
235
ALA
227
A
PRO
228
n
236
PRO
228
A
GLU
229
n
237
GLU
229
A
LEU
230
n
238
LEU
230
A
TYR
231
n
239
TYR
231
A
LEU
232
n
240
LEU
232
A
LYS
233
n
241
LYS
233
A
GLU
234
n
242
GLU
234
A
LEU
235
n
243
LEU
235
A
VAL
236
n
244
VAL
236
A
VAL
237
n
245
VAL
237
A
GLY
238
n
246
GLY
238
A
GLY
239
n
247
GLY
239
A
ILE
240
n
248
ILE
240
A
ASN
241
n
249
ASN
241
A
ARG
242
n
250
ARG
242
A
VAL
243
n
251
VAL
243
A
TYR
244
n
252
TYR
244
A
GLU
245
n
253
GLU
245
A
ILE
246
n
254
ILE
246
A
GLY
247
n
255
GLY
247
A
ARG
248
n
256
ARG
248
A
LEU
249
n
257
LEU
249
A
PHE
250
n
258
PHE
250
A
ARG
251
n
259
ARG
251
A
ASN
252
n
260
ASN
252
A
GLU
253
n
261
GLU
253
A
GLY
254
n
262
GLY
254
A
ILE
255
n
263
ILE
255
A
ASP
256
n
264
ASP
256
A
GLN
257
n
265
GLN
257
A
THR
258
n
266
THR
258
A
HIS
259
n
267
HIS
259
A
ASN
260
n
268
ASN
260
A
PRO
261
n
269
PRO
261
A
GLU
262
n
270
GLU
262
A
PHE
263
n
271
PHE
263
A
THR
264
n
272
THR
264
A
THR
265
n
273
THR
265
A
CYS
266
n
274
CYS
266
A
GLU
267
n
275
GLU
267
A
PHE
268
n
276
PHE
268
A
TYR
269
n
277
TYR
269
A
MET
270
n
278
MET
270
A
ALA
271
n
279
ALA
271
A
TYR
272
n
280
TYR
272
A
ALA
273
n
281
ALA
273
A
ASP
274
n
282
ASP
274
A
TYR
275
n
283
TYR
275
A
ASN
276
n
284
ASN
276
A
ASP
277
n
285
ASP
277
A
ILE
278
n
286
ILE
278
A
MET
279
n
287
MET
279
A
LYS
280
n
288
LYS
280
A
MET
281
n
289
MET
281
A
THR
282
n
290
THR
282
A
GLU
283
n
291
GLU
283
A
GLU
284
n
292
GLU
284
A
LEU
285
n
293
LEU
285
A
LEU
286
n
294
LEU
286
A
GLY
287
n
295
GLY
287
A
ASN
288
n
296
ASN
288
A
MET
289
n
297
MET
289
A
VAL
290
n
298
VAL
290
A
LYS
291
n
299
LYS
291
A
ASP
292
n
300
ASP
292
A
ILE
293
n
301
ILE
293
A
THR
294
n
302
THR
294
A
GLY
295
n
303
GLY
295
A
GLY
296
n
304
GLY
296
A
SER
297
n
305
SER
297
A
THR
298
n
306
THR
298
A
LYS
299
n
307
LYS
299
A
LEU
300
n
308
LEU
300
A
GLU
301
n
309
GLU
301
A
ILE
302
n
310
ILE
302
A
LYS
303
n
311
LYS
303
A
n
312
304
A
n
313
305
A
n
314
306
A
n
315
307
A
n
316
308
A
n
317
309
A
n
318
310
A
n
319
311
A
n
320
312
A
n
321
313
A
n
322
314
A
n
323
315
A
n
324
316
A
n
325
317
A
n
326
318
A
n
327
319
A
n
328
320
A
n
329
321
A
n
330
322
A
n
331
323
A
n
332
324
A
n
333
325
A
n
334
326
A
n
335
327
A
n
336
328
A
n
337
329
A
n
338
330
A
n
339
331
A
n
340
332
A
n
341
333
A
n
342
334
A
n
343
335
A
n
344
336
A
n
345
337
A
n
346
338
A
n
347
339
A
n
348
340
A
n
349
341
A
n
350
342
A
n
351
343
A
n
352
344
A
n
353
345
A
n
354
346
A
n
355
347
A
n
356
348
A
n
357
349
A
n
358
350
A
n
359
351
A
n
360
352
A
n
361
353
A
n
362
354
A
n
363
355
A
n
364
356
A
n
365
357
A
n
366
358
A
n
367
359
A
n
368
360
A
n
369
361
A
n
370
362
A
n
371
363
A
n
372
364
A
n
373
365
A
n
374
366
A
n
375
367
A
n
376
368
A
LYS
369
n
377
LYS
369
A
LYS
370
n
378
LYS
370
A
MET
371
n
379
MET
371
A
VAL
372
n
380
VAL
372
A
LEU
373
n
381
LEU
373
A
ASP
374
n
382
ASP
374
A
PHE
375
n
383
PHE
375
A
THR
376
n
384
THR
376
A
ALA
377
n
385
ALA
377
A
PRO
378
n
386
PRO
378
A
PHE
379
n
387
PHE
379
A
LYS
380
n
388
LYS
380
A
ARG
381
n
389
ARG
381
A
ILE
382
n
390
ILE
382
A
SER
383
n
391
SER
383
A
TYR
384
n
392
TYR
384
A
VAL
385
n
393
VAL
385
A
HIS
386
n
394
HIS
386
A
ALA
387
n
395
ALA
387
A
LEU
388
n
396
LEU
388
A
GLU
389
n
397
GLU
389
A
GLU
390
n
398
GLU
390
A
LYS
391
n
399
LYS
391
A
PHE
392
n
400
PHE
392
A
GLY
393
n
401
GLY
393
A
GLU
394
n
402
GLU
394
A
LYS
395
n
403
LYS
395
A
ILE
396
n
404
ILE
396
A
PRO
397
n
405
PRO
397
A
ARG
398
n
406
ARG
398
A
PRO
399
n
407
PRO
399
A
LEU
400
n
408
LEU
400
A
ASP
401
n
409
ASP
401
A
GLY
402
n
410
GLY
402
A
PRO
403
n
411
PRO
403
A
GLU
404
n
412
GLU
404
A
ALA
405
n
413
ALA
405
A
LEU
406
n
414
LEU
406
A
THR
407
n
415
THR
407
A
PHE
408
n
416
PHE
408
A
LEU
409
n
417
LEU
409
A
LYS
410
n
418
LYS
410
A
LYS
411
n
419
LYS
411
A
GLN
412
n
420
GLN
412
A
ALA
413
n
421
ALA
413
A
ILE
414
n
422
ILE
414
A
ARG
415
n
423
ARG
415
A
PHE
416
n
424
PHE
416
A
ASN
417
n
425
ASN
417
A
ALA
418
n
426
ALA
418
A
ILE
419
n
427
ILE
419
A
CYS
420
n
428
CYS
420
A
ALA
421
n
429
ALA
421
A
GLU
422
n
430
GLU
422
A
PRO
423
n
431
PRO
423
A
GLN
424
n
432
GLN
424
A
THR
425
n
433
THR
425
A
THR
426
n
434
THR
426
A
ALA
427
n
435
ALA
427
A
ARG
428
n
436
ARG
428
A
VAL
429
n
437
VAL
429
A
MET
430
n
438
MET
430
A
ASP
431
n
439
ASP
431
A
LYS
432
n
440
LYS
432
A
LEU
433
n
441
LEU
433
A
PHE
434
n
442
PHE
434
A
GLY
435
n
443
GLY
435
A
ASP
436
n
444
ASP
436
A
LEU
437
n
445
LEU
437
A
ILE
438
n
446
ILE
438
A
GLU
439
n
447
GLU
439
A
VAL
440
n
448
VAL
440
A
ASP
441
n
449
ASP
441
A
LEU
442
n
450
LEU
442
A
VAL
443
n
451
VAL
443
A
GLN
444
n
452
GLN
444
A
PRO
445
n
453
PRO
445
A
THR
446
n
454
THR
446
A
PHE
447
n
455
PHE
447
A
VAL
448
n
456
VAL
448
A
CYS
449
n
457
CYS
449
A
ASP
450
n
458
ASP
450
A
GLN
451
n
459
GLN
451
A
PRO
452
n
460
PRO
452
A
GLN
453
n
461
GLN
453
A
LEU
454
n
462
LEU
454
A
MET
455
n
463
MET
455
A
SER
456
n
464
SER
456
A
PRO
457
n
465
PRO
457
A
LEU
458
n
466
LEU
458
A
ALA
459
n
467
ALA
459
A
LYS
460
n
468
LYS
460
A
TYR
461
n
469
TYR
461
A
HIS
462
n
470
HIS
462
A
ARG
463
n
471
ARG
463
A
SER
464
n
472
SER
464
A
GLU
465
n
473
GLU
465
A
PRO
466
n
474
PRO
466
A
GLU
467
n
475
GLU
467
A
LEU
468
n
476
LEU
468
A
THR
469
n
477
THR
469
A
GLU
470
n
478
GLU
470
A
ARG
471
n
479
ARG
471
A
PHE
472
n
480
PHE
472
A
GLU
473
n
481
GLU
473
A
LEU
474
n
482
LEU
474
A
PHE
475
n
483
PHE
475
A
ILE
476
n
484
ILE
476
A
LEU
477
n
485
LEU
477
A
LYS
478
n
486
LYS
478
A
ARG
479
n
487
ARG
479
A
GLU
480
n
488
GLU
480
A
ILE
481
n
489
ILE
481
A
ALA
482
n
490
ALA
482
A
ASN
483
n
491
ASN
483
A
ALA
484
n
492
ALA
484
A
TYR
485
n
493
TYR
485
A
THR
486
n
494
THR
486
A
GLU
487
n
495
GLU
487
A
LEU
488
n
496
LEU
488
A
ASN
489
n
497
ASN
489
A
ASN
490
n
498
ASN
490
A
PRO
491
n
499
PRO
491
A
ILE
492
n
500
ILE
492
A
VAL
493
n
501
VAL
493
A
GLN
494
n
502
GLN
494
A
ARG
495
n
503
ARG
495
A
SER
496
n
504
SER
496
A
ASN
497
n
505
ASN
497
A
PHE
498
n
506
PHE
498
A
GLU
499
n
507
GLU
499
A
GLN
500
n
508
GLN
500
A
GLN
501
n
509
GLN
501
A
ALA
502
n
510
ALA
502
A
LYS
503
n
511
LYS
503
A
ASP
504
n
512
ASP
504
A
LYS
505
n
513
LYS
505
A
ALA
506
n
514
ALA
506
A
n
515
507
A
n
516
508
A
n
517
509
A
n
518
510
A
n
519
511
A
n
520
512
A
n
521
513
A
LEU
514
n
522
LEU
514
A
VAL
515
n
523
VAL
515
A
ASP
516
n
524
ASP
516
A
GLU
517
n
525
GLU
517
A
VAL
518
n
526
VAL
518
A
PHE
519
n
527
PHE
519
A
LEU
520
n
528
LEU
520
A
ASP
521
n
529
ASP
521
A
ALA
522
n
530
ALA
522
A
ILE
523
n
531
ILE
523
A
GLU
524
n
532
GLU
524
A
HIS
525
n
533
HIS
525
A
ALA
526
n
534
ALA
526
A
PHE
527
n
535
PHE
527
A
PRO
528
n
536
PRO
528
A
PRO
529
n
537
PRO
529
A
THR
530
n
538
THR
530
A
GLY
531
n
539
GLY
531
A
GLY
532
n
540
GLY
532
A
TRP
533
n
541
TRP
533
A
GLY
534
n
542
GLY
534
A
LEU
535
n
543
LEU
535
A
GLY
536
n
544
GLY
536
A
ILE
537
n
545
ILE
537
A
ASP
538
n
546
ASP
538
A
ARG
539
n
547
ARG
539
A
LEU
540
n
548
LEU
540
A
ALA
541
n
549
ALA
541
A
MET
542
n
550
MET
542
A
LEU
543
n
551
LEU
543
A
LEU
544
n
552
LEU
544
A
ALA
545
n
553
ALA
545
A
ASP
546
n
554
ASP
546
A
VAL
547
n
555
VAL
547
A
ASP
548
n
556
ASP
548
A
ASN
549
n
557
ASN
549
A
ILE
550
n
558
ILE
550
A
LYS
551
n
559
LYS
551
A
GLU
552
n
560
GLU
552
A
VAL
553
n
561
VAL
553
A
ILE
554
n
562
ILE
554
A
LEU
555
n
563
LEU
555
A
PHE
556
n
564
PHE
556
A
PRO
557
n
565
PRO
557
A
THR
558
n
566
THR
558
A
MET
559
n
567
MET
559
A
ARG
560
n
568
ARG
560
A
PRO
561
n
569
PRO
561
A
GLU
562
n
570
GLU
562
A
ASP
563
n
571
ASP
563
A
GLU
564
n
572
GLU
564
A
LEU
565
n
573
LEU
565
A
GLU
566
n
574
GLU
566
A
LYS
567
n
575
LYS
567
A
LYS
568
n
576
LYS
568
A
ALA
569
n
577
ALA
569
A
ARG
570
n
578
ARG
570
A
GLU
571
n
579
GLU
571
A
ALA
572
n
580
ALA
572
A
LYS
573
n
581
LYS
573
A
GLU
574
n
582
GLU
574
A
ASP
575
n
583
ASP
575
A
ALA
576
n
584
ALA
576
A
MET
577
n
585
MET
577
A
VAL
578
n
586
VAL
578
A
ALA
579
n
587
ALA
579
A
GLN
580
n
588
GLN
580
A
GLU
581
n
589
GLU
581
A
LYS
582
n
590
LYS
582
A
ALA
583
n
591
ALA
583
A
n
592
584
A
n
593
585
A
n
594
586
A
n
595
587
A
n
596
588
A
n
597
589
A
n
598
590
A
n
599
591
A
n
600
592
A
n
601
593
A
n
602
594
A
n
603
595
A
n
604
596
A
n
605
597
A
n
606
598
A
n
607
599
A
n
608
600
A
n
609
601
A
n
610
602
A
n
611
603
A
n
612
604
A
n
613
605
A
n
614
606
A
n
615
607
A
n
616
608
A
n
617
609
A
n
618
610
A
n
619
611
A
n
620
612
A
n
621
613
A
n
622
614
A
n
623
615
A
n
624
616
A
n
625
617
A
n
626
618
A
n
627
619
A
n
628
620
A
n
629
621
A
n
630
622
A
n
631
623
A
n
632
624
A
n
633
625
A
n
634
626
A
n
635
627
A
n
636
628
A
n
637
629
A
n
638
630
A
n
639
631
A
n
640
632
A
n
641
633
A
n
642
634
A
n
643
635
A
n
644
636
A
n
645
637
A
n
646
638
A
n
647
639
A
n
648
640
A
n
649
641
A
n
650
642
A
n
651
643
A
n
652
644
A
n
653
645
A
n
654
646
A
n
655
647
A
n
656
648
A
n
657
649
A
n
658
650
A
n
659
651
A
n
660
652
A
n
661
653
A
n
662
654
A
n
663
655
A
n
664
656
A
n
665
657
A
n
666
658
A
n
667
659
A
n
668
660
A
n
669
661
A
n
670
662
A
n
671
663
A
n
672
664
A
n
673
665
A
n
674
666
A
n
675
667
A
n
676
668
A
n
677
669
A
n
678
670
A
n
679
671
A
n
680
672
A
n
681
673
A
n
682
674
A
n
683
675
A
n
684
676
A
n
685
677
A
n
686
678
A
n
687
679
A
n
688
680
A
n
689
681
A
n
690
682
A
n
691
683
A
n
692
684
A
n
693
685
A
n
694
686
A
n
695
687
A
n
696
688
A
n
697
689
A
n
698
690
A
n
699
691
A
n
700
692
A
n
701
693
A
n
702
694
A
n
703
695
A
n
704
696
A
n
705
697
A
n
706
698
A
n
707
699
A
n
708
700
A
n
709
701
A
n
710
702
A
n
711
703
A
n
712
704
A
n
713
705
A
n
714
706
A
n
715
707
A
n
716
708
A
n
717
709
A
n
718
710
A
n
719
711
A
n
720
712
A
n
721
713
A
n
722
714
A
n
723
715
A
n
724
716
A
n
725
717
A
n
726
718
A
n
727
719
A
n
728
720
A
n
729
721
A
n
730
722
A
n
731
723
A
n
732
724
A
n
733
725
A
n
734
726
A
n
735
727
A
n
736
728
A
n
737
729
A
n
738
730
A
n
739
731
A
n
740
732
A
n
741
733
A
n
742
734
A
n
743
735
A
n
744
736
A
n
745
737
A
n
746
738
A
n
747
739
A
n
748
740
A
n
749
741
A
n
750
742
A
n
751
743
A
n
752
744
A
n
753
745
A
n
754
746
A
n
755
747
A
n
756
748
A
n
757
749
A
n
758
750
A
n
759
751
A
n
760
752
A
n
761
753
A
n
762
754
A
n
763
755
A
n
764
756
A
n
765
757
A
n
766
758
A
n
767
759
A
n
768
760
A
n
769
761
A
n
770
762
A
n
771
763
A
n
772
764
A
n
773
765
A
n
774
766
A
n
775
767
A
n
776
768
A
n
777
769
A
0.2087
-0.3081
0.0128
3.4215
0.0350
0.6836
-0.0806
-0.0761
-0.1001
0.5629
0.0840
0.6816
0.0382
-0.1621
0.0379
0.3786
-0.0844
0.0665
0.6554
-0.0126
0.4919
refined
147.0406
126.8564
15.5773
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
ALL
author_and_software_defined_assembly
PISA
2
dimeric
10240
-37.3
44880
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_875
-x+3,-y+2,z
crystal symmetry operation
313.6400000000
271.6202076430
0.0000000000
A
O
GLN
48
A
O
GLN
56
A
N
ARG
118
A
N
ARG
126
A
N
THR
117
A
N
THR
125
A
O
SER
125
A
O
SER
133
A
N
LEU
126
A
N
LEU
134
A
O
GLN
83
A
O
GLN
91
A
N
LEU
86
A
N
LEU
94
A
O
MET
71
A
O
MET
79
A
N
HIS
76
A
N
HIS
84
A
O
ARG
59
A
O
ARG
67
A
N
LEU
192
A
N
LEU
200
A
O
ARG
242
A
O
ARG
250
A
N
LEU
249
A
N
LEU
257
A
O
PHE
263
A
O
PHE
271
A
N
MET
270
A
N
MET
278
A
O
GLY
531
A
O
GLY
539
A
N
GLY
536
A
N
GLY
544
A
O
ILE
481
A
O
ILE
489
A
N
ALA
484
A
N
ALA
492
A
O
PHE
472
A
O
PHE
480
A
N
PHE
475
A
N
PHE
483
A
O
THR
446
A
O
THR
454
A
N
PHE
447
A
N
PHE
455
A
O
LYS
380
A
O
LYS
388
A
N
ASN
200
A
N
ASN
208
A
O
TYR
223
A
O
TYR
231
A
N
MET
222
A
N
MET
230
A
O
THR
213
A
O
THR
221
A
N
GLU
301
A
N
GLU
309
A
O
MET
371
A
O
MET
379
1
A
CG
GLU
92
A
CG
GLU
100
1
Y
1
A
CD
GLU
92
A
CD
GLU
100
1
Y
1
A
OE1
GLU
92
A
OE1
GLU
100
1
Y
1
A
OE2
GLU
92
A
OE2
GLU
100
1
Y
1
A
CG
GLU
95
A
CG
GLU
103
1
Y
1
A
CD
GLU
95
A
CD
GLU
103
1
Y
1
A
OE1
GLU
95
A
OE1
GLU
103
1
Y
1
A
OE2
GLU
95
A
OE2
GLU
103
1
Y
1
A
CG
GLU
301
A
CG
GLU
309
1
Y
1
A
CD
GLU
301
A
CD
GLU
309
1
Y
1
A
OE1
GLU
301
A
OE1
GLU
309
1
Y
1
A
OE2
GLU
301
A
OE2
GLU
309
1
Y
1
A
CG
ASN
417
A
CG
ASN
425
1
Y
1
A
OD1
ASN
417
A
OD1
ASN
425
1
Y
1
A
ND2
ASN
417
A
ND2
ASN
425
1
Y
1
A
CG
GLU
422
A
CG
GLU
430
1
Y
1
A
CD
GLU
422
A
CD
GLU
430
1
Y
1
A
OE1
GLU
422
A
OE1
GLU
430
1
Y
1
A
OE2
GLU
422
A
OE2
GLU
430
1
Y
1
A
CG
LEU
565
A
CG
LEU
573
1
Y
1
A
CD1
LEU
565
A
CD1
LEU
573
1
Y
1
A
CD2
LEU
565
A
CD2
LEU
573
1
Y
1
A
CG
LYS
568
A
CG
LYS
576
1
Y
1
A
CD
LYS
568
A
CD
LYS
576
1
Y
1
A
CE
LYS
568
A
CE
LYS
576
1
Y
1
A
NZ
LYS
568
A
NZ
LYS
576
1
Y
1
A
CG
MET
577
A
CG
MET
585
1
Y
1
A
SD
MET
577
A
SD
MET
585
1
Y
1
A
CE
MET
577
A
CE
MET
585
1
Y
1
A
CG
GLN
580
A
CG
GLN
588
1
Y
1
A
CD
GLN
580
A
CD
GLN
588
1
Y
1
A
OE1
GLN
580
A
OE1
GLN
588
1
Y
1
A
NE2
GLN
580
A
NE2
GLN
588
1
Y
1
A
MET
-7
A
MET
1
1
Y
1
A
HIS
-6
A
HIS
2
1
Y
1
A
HIS
-5
A
HIS
3
1
Y
1
A
HIS
-4
A
HIS
4
1
Y
1
A
ASP
304
A
ASP
312
1
Y
1
A
ARG
305
A
ARG
313
1
Y
1
A
LEU
306
A
LEU
314
1
Y
1
A
MET
307
A
MET
315
1
Y
1
A
ASP
308
A
ASP
316
1
Y
1
A
ILE
309
A
ILE
317
1
Y
1
A
ASN
310
A
ASN
318
1
Y
1
A
ASN
311
A
ASN
319
1
Y
1
A
GLU
312
A
GLU
320
1
Y
1
A
GLU
313
A
GLU
321
1
Y
1
A
ASP
314
A
ASP
322
1
Y
1
A
ILE
315
A
ILE
323
1
Y
1
A
LYS
316
A
LYS
324
1
Y
1
A
MET
317
A
MET
325
1
Y
1
A
LEU
318
A
LEU
326
1
Y
1
A
GLU
319
A
GLU
327
1
Y
1
A
LYS
320
A
LYS
328
1
Y
1
A
PHE
321
A
PHE
329
1
Y
1
A
PHE
322
A
PHE
330
1
Y
1
A
LYS
323
A
LYS
331
1
Y
1
A
GLU
324
A
GLU
332
1
Y
1
A
PRO
325
A
PRO
333
1
Y
1
A
ILE
326
A
ILE
334
1
Y
1
A
PRO
327
A
PRO
335
1
Y
1
A
ARG
328
A
ARG
336
1
Y
1
A
PRO
329
A
PRO
337
1
Y
1
A
PHE
330
A
PHE
338
1
Y
1
A
ASN
331
A
ASN
339
1
Y
1
A
SER
332
A
SER
340
1
Y
1
A
ALA
333
A
ALA
341
1
Y
1
A
GLU
334
A
GLU
342
1
Y
1
A
CYS
335
A
CYS
343
1
Y
1
A
SER
336
A
SER
344
1
Y
1
A
LYS
337
A
LYS
345
1
Y
1
A
VAL
338
A
VAL
346
1
Y
1
A
ILE
339
A
ILE
347
1
Y
1
A
GLU
340
A
GLU
348
1
Y
1
A
LYS
341
A
LYS
349
1
Y
1
A
HIS
342
A
HIS
350
1
Y
1
A
CYS
343
A
CYS
351
1
Y
1
A
THR
344
A
THR
352
1
Y
1
A
GLU
345
A
GLU
353
1
Y
1
A
LEU
346
A
LEU
354
1
Y
1
A
ASN
347
A
ASN
355
1
Y
1
A
TYR
348
A
TYR
356
1
Y
1
A
TYR
349
A
TYR
357
1
Y
1
A
TYR
350
A
TYR
358
1
Y
1
A
ASP
351
A
ASP
359
1
Y
1
A
GLY
352
A
GLY
360
1
Y
1
A
ASN
353
A
ASN
361
1
Y
1
A
ASN
354
A
ASN
362
1
Y
1
A
GLU
355
A
GLU
363
1
Y
1
A
LYS
356
A
LYS
364
1
Y
1
A
ALA
357
A
ALA
365
1
Y
1
A
MET
358
A
MET
366
1
Y
1
A
LYS
359
A
LYS
367
1
Y
1
A
LYS
360
A
LYS
368
1
Y
1
A
LEU
361
A
LEU
369
1
Y
1
A
PHE
362
A
PHE
370
1
Y
1
A
ALA
363
A
ALA
371
1
Y
1
A
ASP
364
A
ASP
372
1
Y
1
A
PHE
365
A
PHE
373
1
Y
1
A
VAL
366
A
VAL
374
1
Y
1
A
THR
367
A
THR
375
1
Y
1
A
GLU
368
A
GLU
376
1
Y
1
A
ALA
507
A
ALA
515
1
Y
1
A
GLY
508
A
GLY
516
1
Y
1
A
ASP
509
A
ASP
517
1
Y
1
A
ASP
510
A
ASP
518
1
Y
1
A
GLU
511
A
GLU
519
1
Y
1
A
ALA
512
A
ALA
520
1
Y
1
A
GLN
513
A
GLN
521
1
Y
1
A
ALA
584
A
ALA
592
1
Y
1
A
THR
585
A
THR
593
1
Y
1
A
GLU
586
A
GLU
594
1
Y
1
A
GLU
587
A
GLU
595
1
Y
1
A
LYS
588
A
LYS
596
1
Y
1
A
GLY
589
A
GLY
597
1
Y
1
A
GLY
590
A
GLY
598
1
Y
1
A
LYS
591
A
LYS
599
1
Y
1
A
LYS
592
A
LYS
600
1
Y
1
A
VAL
593
A
VAL
601
1
Y
1
A
VAL
594
A
VAL
602
1
Y
1
A
LYS
595
A
LYS
603
1
Y
1
A
PRO
596
A
PRO
604
1
Y
1
A
LYS
597
A
LYS
605
1
Y
1
A
ALA
598
A
ALA
606
1
Y
1
A
ASN
599
A
ASN
607
1
Y
1
A
LYS
600
A
LYS
608
1
Y
1
A
GLN
601
A
GLN
609
1
Y
1
A
GLN
602
A
GLN
610
1
Y
1
A
PRO
603
A
PRO
611
1
Y
1
A
VAL
604
A
VAL
612
1
Y
1
A
LYS
605
A
LYS
613
1
Y
1
A
GLU
606
A
GLU
614
1
Y
1
A
VAL
607
A
VAL
615
1
Y
1
A
LEU
608
A
LEU
616
1
Y
1
A
ASP
609
A
ASP
617
1
Y
1
A
GLY
610
A
GLY
618
1
Y
1
A
PHE
611
A
PHE
619
1
Y
1
A
GLN
612
A
GLN
620
1
Y
1
A
LEU
613
A
LEU
621
1
Y
1
A
GLU
614
A
GLU
622
1
Y
1
A
ILE
615
A
ILE
623
1
Y
1
A
ARG
616
A
ARG
624
1
Y
1
A
VAL
617
A
VAL
625
1
Y
1
A
GLY
618
A
GLY
626
1
Y
1
A
LYS
619
A
LYS
627
1
Y
1
A
ILE
620
A
ILE
628
1
Y
1
A
VAL
621
A
VAL
629
1
Y
1
A
GLU
622
A
GLU
630
1
Y
1
A
ALA
623
A
ALA
631
1
Y
1
A
GLY
624
A
GLY
632
1
Y
1
A
PRO
625
A
PRO
633
1
Y
1
A
HIS
626
A
HIS
634
1
Y
1
A
PRO
627
A
PRO
635
1
Y
1
A
ASN
628
A
ASN
636
1
Y
1
A
SER
629
A
SER
637
1
Y
1
A
GLU
630
A
GLU
638
1
Y
1
A
HIS
631
A
HIS
639
1
Y
1
A
LEU
632
A
LEU
640
1
Y
1
A
LEU
633
A
LEU
641
1
Y
1
A
ALA
634
A
ALA
642
1
Y
1
A
LEU
635
A
LEU
643
1
Y
1
A
LYS
636
A
LYS
644
1
Y
1
A
VAL
637
A
VAL
645
1
Y
1
A
ASP
638
A
ASP
646
1
Y
1
A
VAL
639
A
VAL
647
1
Y
1
A
GLY
640
A
GLY
648
1
Y
1
A
GLU
641
A
GLU
649
1
Y
1
A
GLU
642
A
GLU
650
1
Y
1
A
LYS
643
A
LYS
651
1
Y
1
A
PRO
644
A
PRO
652
1
Y
1
A
ARG
645
A
ARG
653
1
Y
1
A
SER
646
A
SER
654
1
Y
1
A
VAL
647
A
VAL
655
1
Y
1
A
VAL
648
A
VAL
656
1
Y
1
A
ALA
649
A
ALA
657
1
Y
1
A
GLY
650
A
GLY
658
1
Y
1
A
LEU
651
A
LEU
659
1
Y
1
A
ALA
652
A
ALA
660
1
Y
1
A
GLU
653
A
GLU
661
1
Y
1
A
HIS
654
A
HIS
662
1
Y
1
A
TYR
655
A
TYR
663
1
Y
1
A
LYS
656
A
LYS
664
1
Y
1
A
PRO
657
A
PRO
665
1
Y
1
A
GLU
658
A
GLU
666
1
Y
1
A
GLU
659
A
GLU
667
1
Y
1
A
LEU
660
A
LEU
668
1
Y
1
A
LEU
661
A
LEU
669
1
Y
1
A
ASN
662
A
ASN
670
1
Y
1
A
GLN
663
A
GLN
671
1
Y
1
A
LYS
664
A
LYS
672
1
Y
1
A
ALA
665
A
ALA
673
1
Y
1
A
THR
666
A
THR
674
1
Y
1
A
PHE
667
A
PHE
675
1
Y
1
A
VAL
668
A
VAL
676
1
Y
1
A
CYS
669
A
CYS
677
1
Y
1
A
ASN
670
A
ASN
678
1
Y
1
A
LEU
671
A
LEU
679
1
Y
1
A
LYS
672
A
LYS
680
1
Y
1
A
PRO
673
A
PRO
681
1
Y
1
A
SER
674
A
SER
682
1
Y
1
A
LYS
675
A
LYS
683
1
Y
1
A
LEU
676
A
LEU
684
1
Y
1
A
ARG
677
A
ARG
685
1
Y
1
A
GLY
678
A
GLY
686
1
Y
1
A
VAL
679
A
VAL
687
1
Y
1
A
ALA
680
A
ALA
688
1
Y
1
A
SER
681
A
SER
689
1
Y
1
A
GLU
682
A
GLU
690
1
Y
1
A
ALA
683
A
ALA
691
1
Y
1
A
MET
684
A
MET
692
1
Y
1
A
ILE
685
A
ILE
693
1
Y
1
A
LEU
686
A
LEU
694
1
Y
1
A
ALA
687
A
ALA
695
1
Y
1
A
ALA
688
A
ALA
696
1
Y
1
A
THR
689
A
THR
697
1
Y
1
A
SER
690
A
SER
698
1
Y
1
A
LEU
691
A
LEU
699
1
Y
1
A
ASP
692
A
ASP
700
1
Y
1
A
GLY
693
A
GLY
701
1
Y
1
A
THR
694
A
THR
702
1
Y
1
A
LYS
695
A
LYS
703
1
Y
1
A
VAL
696
A
VAL
704
1
Y
1
A
LYS
697
A
LYS
705
1
Y
1
A
PHE
698
A
PHE
706
1
Y
1
A
CYS
699
A
CYS
707
1
Y
1
A
HIS
700
A
HIS
708
1
Y
1
A
PRO
701
A
PRO
709
1
Y
1
A
SER
702
A
SER
710
1
Y
1
A
ALA
703
A
ALA
711
1
Y
1
A
ASP
704
A
ASP
712
1
Y
1
A
ALA
705
A
ALA
713
1
Y
1
A
ALA
706
A
ALA
714
1
Y
1
A
ILE
707
A
ILE
715
1
Y
1
A
GLY
708
A
GLY
716
1
Y
1
A
ALA
709
A
ALA
717
1
Y
1
A
GLN
710
A
GLN
718
1
Y
1
A
VAL
711
A
VAL
719
1
Y
1
A
ILE
712
A
ILE
720
1
Y
1
A
PRO
713
A
PRO
721
1
Y
1
A
LYS
714
A
LYS
722
1
Y
1
A
GLU
715
A
GLU
723
1
Y
1
A
GLY
716
A
GLY
724
1
Y
1
A
LYS
717
A
LYS
725
1
Y
1
A
VAL
718
A
VAL
726
1
Y
1
A
THR
719
A
THR
727
1
Y
1
A
ILE
720
A
ILE
728
1
Y
1
A
SER
721
A
SER
729
1
Y
1
A
ALA
722
A
ALA
730
1
Y
1
A
LYS
723
A
LYS
731
1
Y
1
A
LYS
724
A
LYS
732
1
Y
1
A
ILE
725
A
ILE
733
1
Y
1
A
SER
726
A
SER
734
1
Y
1
A
ILE
727
A
ILE
735
1
Y
1
A
ASP
728
A
ASP
736
1
Y
1
A
VAL
729
A
VAL
737
1
Y
1
A
VAL
730
A
VAL
738
1
Y
1
A
GLY
731
A
GLY
739
1
Y
1
A
LYS
732
A
LYS
740
1
Y
1
A
MET
733
A
MET
741
1
Y
1
A
ASN
734
A
ASN
742
1
Y
1
A
LEU
735
A
LEU
743
1
Y
1
A
ALA
736
A
ALA
744
1
Y
1
A
LEU
737
A
LEU
745
1
Y
1
A
LYS
738
A
LYS
746
1
Y
1
A
GLY
739
A
GLY
747
1
Y
1
A
GLY
740
A
GLY
748
1
Y
1
A
LEU
741
A
LEU
749
1
Y
1
A
VAL
742
A
VAL
750
1
Y
1
A
ARG
743
A
ARG
751
1
Y
1
A
THR
744
A
THR
752
1
Y
1
A
ASN
745
A
ASN
753
1
Y
1
A
ASP
746
A
ASP
754
1
Y
1
A
VAL
747
A
VAL
755
1
Y
1
A
PRO
748
A
PRO
756
1
Y
1
A
LEU
749
A
LEU
757
1
Y
1
A
ILE
750
A
ILE
758
1
Y
1
A
VAL
751
A
VAL
759
1
Y
1
A
LYS
752
A
LYS
760
1
Y
1
A
ASP
753
A
ASP
761
1
Y
1
A
THR
754
A
THR
762
1
Y
1
A
GLU
755
A
GLU
763
1
Y
1
A
LEU
756
A
LEU
764
1
Y
1
A
THR
757
A
THR
765
1
Y
1
A
VAL
758
A
VAL
766
1
Y
1
A
THR
759
A
THR
767
1
Y
1
A
VAL
760
A
VAL
768
1
Y
1
A
ASP
761
A
ASP
769
1
Y
1
A
GLU
762
A
GLU
770
1
Y
1
A
VAL
763
A
VAL
771
1
Y
1
A
ILE
764
A
ILE
772
1
Y
1
A
ASP
765
A
ASP
773
1
Y
1
A
GLY
766
A
GLY
774
1
Y
1
A
THR
767
A
THR
775
1
Y
1
A
VAL
768
A
VAL
776
1
Y
1
A
ARG
769
A
ARG
777
1
Y
1
A
A
NZ
O
LYS
LEU
299
544
2.10
1
A
A
LYS
LYS
369
370
-149.39
1
A
A
ARG
PRO
398
399
-139.61
1
A
HIS
-2
-26.73
127.43
1
A
GLU
92
-59.68
-71.88
1
A
LYS
157
-104.71
72.97
1
A
GLU
253
-128.44
-154.58
1
A
TYR
384
-52.09
-74.76
1
A
PRO
399
27.97
87.36
1
A
PHE
416
-101.40
-82.22
1
A
ALA
418
58.01
10.20
1
A
CYS
420
-170.31
-176.90
1
A
SER
464
-120.91
-58.70
1
A
ALA
526
85.05
105.81
1
A
ASP
563
-79.75
-165.67
80.7
0.2362
0.2027
0.2042
2.901
38.683
1420
29222
4.9
99.71
0.46
1
1.35
MOLECULAR REPLACEMENT
24.82
0.90
1.11
PDB ENTRY 3BJU
ML
FLAT BULK SOLVENT MODEL
2.901
38.683
0
4130
31
0
4099
0.006
4217
0.987
5701
15.022
1599
0.038
638
0.007
729
0.3812
0.3816
3.0047
153
2711
99.00
0.3511
0.3110
3.1249
138
2773
100.00
0.3022
0.2728
3.2671
151
2793
100.00
0.2923
0.2521
3.4392
149
2737
100.00
0.2551
0.2193
3.6545
128
2781
100.00
0.2371
0.1896
3.9365
150
2789
100.00
0.2168
0.1647
4.3321
117
2785
100.00
0.1679
0.1483
4.9579
138
2813
100.00
0.2124
0.1903
6.2422
153
2779
100.00
0.2363
0.2042
38.6861
143
2841
99.00
84.21
2.90
39.20
4UPA
29250
1.0
0.11
1
15.20
6.1
99.7
2.90
3.10
1.10
1
5.1
99.0
refinement
PHENIX
(PHENIX.REFINE)
data reduction
XDS
data scaling
Aimless
phasing
PHASER
Crystal structure of Entamoeba histolytica lysyl-tRNA synthetase in complex with AMPPNP
1
N
N
2
N
N
A
HIS
-1
A
HIS
7
HELX_P
A
ALA
19
A
ALA
27
1
1
21
A
THR
33
A
THR
41
HELX_P
A
SER
42
A
SER
50
1
2
10
A
SER
89
A
SER
97
HELX_P
A
TYR
91
A
TYR
99
5
3
3
A
ASN
93
A
ASN
101
HELX_P
A
ILE
104
A
ILE
112
1
4
12
A
ASP
150
A
ASP
158
HELX_P
A
LYS
157
A
LYS
165
1
5
8
A
LYS
157
A
LYS
165
HELX_P
A
ASN
165
A
ASN
173
1
6
9
A
SER
168
A
SER
176
HELX_P
A
ASP
188
A
ASP
196
1
7
21
A
PRO
228
A
PRO
236
HELX_P
A
GLY
238
A
GLY
246
1
8
11
A
ASP
274
A
ASP
282
HELX_P
A
GLY
295
A
GLY
303
1
9
22
A
TYR
384
A
TYR
392
HELX_P
A
GLY
393
A
GLY
401
1
10
10
A
GLY
402
A
GLY
410
HELX_P
A
PHE
416
A
PHE
424
1
11
15
A
THR
425
A
THR
433
HELX_P
A
ILE
438
A
ILE
446
1
12
14
A
ASN
490
A
ASN
498
HELX_P
A
ALA
506
A
ALA
514
1
13
17
A
ASP
516
A
ASP
524
HELX_P
A
HIS
525
A
HIS
533
1
14
10
A
ILE
537
A
ILE
545
HELX_P
A
ASP
546
A
ASP
554
1
15
10
A
ASN
549
A
ASN
557
HELX_P
A
ILE
554
A
ILE
562
5
16
6
A
ASP
563
A
ASP
571
HELX_P
A
ALA
583
A
ALA
591
1
17
21
LIGASE
LIGASE, AMINOACYLATION
A
MET
144
A
MET
152
1
A
HIS
145
A
HIS
153
1.30
A
LEU
148
A
LEU
156
1
A
GLY
149
A
GLY
157
2.29
A
ALA
377
A
ALA
385
1
A
PRO
378
A
PRO
386
-1.78
A
GLU
422
A
GLU
430
1
A
PRO
423
A
PRO
431
0.22
A
VAL
440
A
VAL
448
1
A
ASP
441
A
ASP
449
-0.09
C4M7X2_ENTHI
UNP
1
C4M7X2
2
769
4UPA
2
769
C4M7X2
A
1
10
777
1
expression tag
MET
-7
4UPA
A
C4M7X2
UNP
1
1
expression tag
HIS
-6
4UPA
A
C4M7X2
UNP
2
1
expression tag
HIS
-5
4UPA
A
C4M7X2
UNP
3
1
expression tag
HIS
-4
4UPA
A
C4M7X2
UNP
4
1
expression tag
HIS
-3
4UPA
A
C4M7X2
UNP
5
1
expression tag
HIS
-2
4UPA
A
C4M7X2
UNP
6
1
expression tag
HIS
-1
4UPA
A
C4M7X2
UNP
7
1
expression tag
MET
0
4UPA
A
C4M7X2
UNP
8
1
expression tag
LEU
1
4UPA
A
C4M7X2
UNP
9
1
LEU
conflict
LYS
582
4UPA
A
C4M7X2
UNP
582
590
1
VAL
engineered mutation
ILE
764
4UPA
A
C4M7X2
UNP
764
772
7
8
3
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
48
A
GLN
56
A
VAL
49
A
VAL
57
A
ILE
109
A
ILE
117
A
ARG
118
A
ARG
126
A
LEU
124
A
LEU
132
A
SER
135
A
SER
143
A
THR
80
A
THR
88
A
ASN
87
A
ASN
95
A
LEU
70
A
LEU
78
A
ASP
77
A
ASP
85
A
VAL
54
A
VAL
62
A
SER
65
A
SER
73
A
GLN
48
A
GLN
56
A
VAL
49
A
VAL
57
A
LEU
192
A
LEU
200
A
GLU
193
A
GLU
201
A
ARG
242
A
ARG
250
A
PHE
250
A
PHE
258
A
GLU
262
A
GLU
270
A
ALA
271
A
ALA
279
A
THR
530
A
THR
538
A
GLY
536
A
GLY
544
A
ARG
479
A
ARG
487
A
THR
486
A
THR
494
A
ARG
471
A
ARG
479
A
ILE
476
A
ILE
484
A
THR
446
A
THR
454
A
CYS
449
A
CYS
457
A
LYS
380
A
LYS
388
A
SER
383
A
SER
391
A
LEU
199
A
LEU
207
A
ASN
200
A
ASN
208
A
ILE
220
A
ILE
228
A
MET
224
A
MET
232
A
ILE
212
A
ILE
220
A
HIS
215
A
HIS
223
A
THR
298
A
THR
306
A
ILE
302
A
ILE
310
A
LYS
370
A
LYS
378
A
ASP
374
A
ASP
382
BINDING SITE FOR RESIDUE ANP A 1584
A
ANP
1584
Software
7
A
ARG
251
A
ARG
259
7
1_555
A
THR
258
A
THR
266
7
1_555
A
HIS
259
A
HIS
267
7
1_555
A
ASN
260
A
ASN
268
7
1_555
A
PHE
263
A
PHE
271
7
1_555
A
ARG
539
A
ARG
547
7
1_555
A
ILE
550
A
ILE
558
7
1_555
171
P 62