0.011247
0.006494
0.000000
0.000000
0.012987
0.000000
0.000000
0.000000
0.003275
0.00000
0.00000
0.00000
Pannek, M.
Gertz, M.
Steegborn, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
120.00
88.910
88.910
305.330
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C7 H6 O2
122.121
BENZOIC ACID
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O S
78.133
DIMETHYL SULFOXIDE
non-polymer
C8 H18 N2 O4 S
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
non-polymer
C10 H10 O4
194.184
(2S)-2-phenylbutanedioic acid
non-polymer
C10 H10 O4
194.184
(2R)-2-phenylbutanedioic acid
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
O
Y
77
N
C
Y
78
N
C
Y
79
N
C
Y
80
N
C
Y
81
N
C
Y
82
N
C
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
R
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
S
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
S
N
104
N
O
N
105
N
C
N
106
N
C
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
N
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
S
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
C
N
147
N
O
N
148
N
C
N
149
S
C
N
150
N
C
N
151
N
O
N
152
N
O
Y
153
N
C
Y
154
N
C
Y
155
N
C
Y
156
N
C
Y
157
N
C
Y
158
N
C
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
C
N
171
N
O
N
172
N
C
N
173
R
C
N
174
N
C
N
175
N
O
N
176
N
O
Y
177
N
C
Y
178
N
C
Y
179
N
C
Y
180
N
C
Y
181
N
C
Y
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
N
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
O
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
N
C
N
235
N
C
N
236
N
O
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
Y
248
N
C
Y
249
N
N
Y
250
N
C
Y
251
N
C
Y
252
N
N
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
S
C
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
N
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
S
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
NA
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
N
385
N
C
N
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
N
402
N
O
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
R
C
N
416
N
O
N
417
N
C
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
N
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
N
N
456
S
C
N
457
N
C
N
458
N
O
N
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
Y
465
N
C
N
466
N
O
N
467
N
O
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
N
N
480
S
C
N
481
N
C
N
482
N
O
N
483
N
C
N
484
N
C
N
485
N
C
N
486
N
O
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
Y
74
N
doub
Y
75
N
sing
Y
76
N
sing
N
77
N
sing
Y
78
N
doub
N
79
N
sing
Y
80
N
sing
N
81
N
sing
Y
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
Y
148
N
sing
Y
149
N
doub
Y
150
N
doub
Y
151
N
sing
Y
152
N
doub
Y
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
Y
172
N
sing
Y
173
N
doub
Y
174
N
doub
Y
175
N
sing
Y
176
N
doub
Y
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
Y
245
N
sing
Y
246
N
doub
Y
247
N
doub
N
248
N
sing
Y
249
N
sing
N
250
N
sing
Y
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
Y
353
N
doub
Y
354
N
sing
Y
355
N
sing
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
Y
422
N
doub
Y
423
N
sing
Y
424
N
sing
N
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
N
429
N
sing
Y
430
N
sing
Y
431
N
doub
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
Y
450
N
doub
Y
451
N
sing
Y
452
N
sing
N
453
N
sing
Y
454
N
doub
N
455
N
sing
Y
456
N
doub
N
457
N
sing
Y
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
GE
Angew.Chem.Int.Ed.Engl.
9999
1433-7851
53
10728
10.1002/ANIE.201402679
25111069
Chemical Probing of the Human Sirtuin 5 Active Site Reveals its Substrate Acyl Specificity and Peptide-Based Inhibitors.
2014
10.2210/pdb4utv/pdb
pdb_00004utv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRROR
CCD
2012-11-14
MARMOSAIC 225 mm CCD
SI111 CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
0.918
1.0
14.1
BESSY
0.918
SYNCHROTRON
BESSY BEAMLINE 14.1
30423.785
NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL
3.5.1.-
CATALYTIC CORE, RESIDUES 30-298
2
man
polymer
969.112
CARBAMOYLPHOSPHATE SYNTHETASE I
UNP RESIDUES 524-531
1
syn
polymer
65.409
ZINC ION
2
syn
non-polymer
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
1
syn
non-polymer
78.133
DIMETHYL SULFOXIDE
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
194.184
(2R)-2-phenylbutanedioic acid
1
syn
non-polymer
194.184
(2S)-2-phenylbutanedioic acid
1
syn
non-polymer
18.015
water
134
nat
water
REGULATORY PROTEIN SIR2 HOMOLOG 5, SIRTUIN 5
3-PHENYL-SUCCINYL-CPS1 PEPTIDE
no
no
GIDPFTTRPSSDLTAFREHFAKAKHIAIITGAGVSAESGVPTFRGPGGFWRKWQAQDLATPEAFSRDPSLVWEFYHYRRE
VMRSKMPNPAHLAIAECEARLGQQGRSVVIITQNIDELHHRAGSKHVYEIHGSLFKTRCMSCGEVKANHKSPICPALDGK
GAPDPNTKEARIPVELLPRCERKSCNGLLRPHVVWFGETLDSDILTAVERELEKCDLCLVVGTSSIVYPAAMFAPQVASR
GVPVAEFNMECTPATQRFKYHFEGPCGSTLPPALE
GIDPFTTRPSSDLTAFREHFAKAKHIAIITGAGVSAESGVPTFRGPGGFWRKWQAQDLATPEAFSRDPSLVWEFYHYRRE
VMRSKMPNPAHLAIAECEARLGQQGRSVVIITQNIDELHHRAGSKHVYEIHGSLFKTRCMSCGEVKANHKSPICPALDGK
GAPDPNTKEARIPVELLPRCERKSCNGLLRPHVVWFGETLDSDILTAVERELEKCDLCLVVGTSSIVYPAAMFAPQVASR
GVPVAEFNMECTPATQRFKYHFEGPCGSTLPPALE
A,B
polypeptide(L)
no
yes
(BEZ)GVLKEYGV
XGVLKEYGV
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ZEBRAFISH
sample
7955
DANIO RERIO
469008
ESCHERICHIA COLI
BL21(DE3)
CODONPLUS
PET151
PLASMID
1
2.9
57
NONE
7.6
22% PEG3350, 0.1 M HEPES PH 7.6
database_2
pdbx_database_status
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Database references
Database references
Derived calculations
Other
Data collection
Refinement description
1
0
2014-08-20
1
1
2014-10-08
1
2
2022-12-07
1
3
2024-01-31
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn_type.id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH SUCCINYLATED CPS1-PEPTIDE
CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH GLUTARYLATED CPS1-PEPTIDE
CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH 3-NITRO-PROPIONYLATED CPS1-PEPTIDE
CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH ADIPOYLATED CPS1-PEPTIDE
CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH 3-METHYL-SUCCINYLATED CPS1-PEPTIDE
CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH 3,3-DIMETHYL-SUCCINYLATED CPS1-PEPTIDE
CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH 3S-Z-AMINO-SUCCINYLATED CPS1-PEPTIDE
CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH 2R-BUTYL-SUCCINYLATED CPS1-PEPTIDE
PDBE
Y
PDBE
2014-07-23
REL
REL
ZN
ZINC ION
EPE
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
DMS
DIMETHYL SULFOXIDE
NA
SODIUM ION
FSL
(2R)-2-phenylbutanedioic acid
F9V
(2S)-2-phenylbutanedioic acid
HOH
water
9606
HUMAN
HOMO SAPIENS
sample
N-TERMINAL RESIDUES GIDPFT ARE ENCODED ON THE PET151
VECTOR AND DO NOT BELONG TO THE NATURAL ZEBRAFISH SIRT5
PROTEIN
2NYR
PDB ENTRY 2NYR
PDB
experimental model
ZN
1299
3
ZN
ZN
1299
A
ZN
1299
3
ZN
ZN
1299
B
EPE
1300
4
EPE
EPE
1300
B
DMS
1301
5
DMS
DMS
1301
B
NA
1302
6
NA
NA
1302
B
FSL
1004
7
FSL
FSL
1004
C
F9V
1005
8
F9V
F9V
1005
C
HOH
2001
9
HOH
HOH
2001
A
HOH
2002
9
HOH
HOH
2002
A
HOH
2003
9
HOH
HOH
2003
A
HOH
2004
9
HOH
HOH
2004
A
HOH
2005
9
HOH
HOH
2005
A
HOH
2006
9
HOH
HOH
2006
A
HOH
2007
9
HOH
HOH
2007
A
HOH
2008
9
HOH
HOH
2008
A
HOH
2009
9
HOH
HOH
2009
A
HOH
2010
9
HOH
HOH
2010
A
HOH
2011
9
HOH
HOH
2011
A
HOH
2012
9
HOH
HOH
2012
A
HOH
2013
9
HOH
HOH
2013
A
HOH
2014
9
HOH
HOH
2014
A
HOH
2015
9
HOH
HOH
2015
A
HOH
2016
9
HOH
HOH
2016
A
HOH
2017
9
HOH
HOH
2017
A
HOH
2018
9
HOH
HOH
2018
A
HOH
2019
9
HOH
HOH
2019
A
HOH
2020
9
HOH
HOH
2020
A
HOH
2021
9
HOH
HOH
2021
A
HOH
2022
9
HOH
HOH
2022
A
HOH
2023
9
HOH
HOH
2023
A
HOH
2024
9
HOH
HOH
2024
A
HOH
2025
9
HOH
HOH
2025
A
HOH
2026
9
HOH
HOH
2026
A
HOH
2027
9
HOH
HOH
2027
A
HOH
2028
9
HOH
HOH
2028
A
HOH
2029
9
HOH
HOH
2029
A
HOH
2030
9
HOH
HOH
2030
A
HOH
2031
9
HOH
HOH
2031
A
HOH
2032
9
HOH
HOH
2032
A
HOH
2033
9
HOH
HOH
2033
A
HOH
2034
9
HOH
HOH
2034
A
HOH
2035
9
HOH
HOH
2035
A
HOH
2036
9
HOH
HOH
2036
A
HOH
2037
9
HOH
HOH
2037
A
HOH
2038
9
HOH
HOH
2038
A
HOH
2039
9
HOH
HOH
2039
A
HOH
2040
9
HOH
HOH
2040
A
HOH
2041
9
HOH
HOH
2041
A
HOH
2042
9
HOH
HOH
2042
A
HOH
2043
9
HOH
HOH
2043
A
HOH
2044
9
HOH
HOH
2044
A
HOH
2045
9
HOH
HOH
2045
A
HOH
2046
9
HOH
HOH
2046
A
HOH
2047
9
HOH
HOH
2047
A
HOH
2048
9
HOH
HOH
2048
A
HOH
2049
9
HOH
HOH
2049
A
HOH
2050
9
HOH
HOH
2050
A
HOH
2051
9
HOH
HOH
2051
A
HOH
2052
9
HOH
HOH
2052
A
HOH
2053
9
HOH
HOH
2053
A
HOH
2054
9
HOH
HOH
2054
A
HOH
2055
9
HOH
HOH
2055
A
HOH
2056
9
HOH
HOH
2056
A
HOH
2057
9
HOH
HOH
2057
A
HOH
2058
9
HOH
HOH
2058
A
HOH
2059
9
HOH
HOH
2059
A
HOH
2060
9
HOH
HOH
2060
A
HOH
2061
9
HOH
HOH
2061
A
HOH
2062
9
HOH
HOH
2062
A
HOH
2063
9
HOH
HOH
2063
A
HOH
2064
9
HOH
HOH
2064
A
HOH
2065
9
HOH
HOH
2065
A
HOH
2066
9
HOH
HOH
2066
A
HOH
2067
9
HOH
HOH
2067
A
HOH
2068
9
HOH
HOH
2068
A
HOH
2069
9
HOH
HOH
2069
A
HOH
2070
9
HOH
HOH
2070
A
HOH
2071
9
HOH
HOH
2071
A
HOH
2072
9
HOH
HOH
2072
A
HOH
2073
9
HOH
HOH
2073
A
HOH
2074
9
HOH
HOH
2074
A
HOH
2075
9
HOH
HOH
2075
A
HOH
2076
9
HOH
HOH
2076
A
HOH
2077
9
HOH
HOH
2077
A
HOH
2078
9
HOH
HOH
2078
A
HOH
2079
9
HOH
HOH
2079
A
HOH
2080
9
HOH
HOH
2080
A
HOH
2081
9
HOH
HOH
2081
A
HOH
2082
9
HOH
HOH
2082
A
HOH
2083
9
HOH
HOH
2083
A
HOH
2084
9
HOH
HOH
2084
A
HOH
2085
9
HOH
HOH
2085
A
HOH
2086
9
HOH
HOH
2086
A
HOH
2087
9
HOH
HOH
2087
A
HOH
2088
9
HOH
HOH
2088
A
HOH
2089
9
HOH
HOH
2089
A
HOH
2001
9
HOH
HOH
2001
B
HOH
2002
9
HOH
HOH
2002
B
HOH
2003
9
HOH
HOH
2003
B
HOH
2004
9
HOH
HOH
2004
B
HOH
2005
9
HOH
HOH
2005
B
HOH
2006
9
HOH
HOH
2006
B
HOH
2007
9
HOH
HOH
2007
B
HOH
2008
9
HOH
HOH
2008
B
HOH
2009
9
HOH
HOH
2009
B
HOH
2010
9
HOH
HOH
2010
B
HOH
2011
9
HOH
HOH
2011
B
HOH
2012
9
HOH
HOH
2012
B
HOH
2013
9
HOH
HOH
2013
B
HOH
2014
9
HOH
HOH
2014
B
HOH
2015
9
HOH
HOH
2015
B
HOH
2016
9
HOH
HOH
2016
B
HOH
2017
9
HOH
HOH
2017
B
HOH
2018
9
HOH
HOH
2018
B
HOH
2019
9
HOH
HOH
2019
B
HOH
2020
9
HOH
HOH
2020
B
HOH
2021
9
HOH
HOH
2021
B
HOH
2022
9
HOH
HOH
2022
B
HOH
2023
9
HOH
HOH
2023
B
HOH
2024
9
HOH
HOH
2024
B
HOH
2025
9
HOH
HOH
2025
B
HOH
2026
9
HOH
HOH
2026
B
HOH
2027
9
HOH
HOH
2027
B
HOH
2028
9
HOH
HOH
2028
B
HOH
2029
9
HOH
HOH
2029
B
HOH
2030
9
HOH
HOH
2030
B
HOH
2031
9
HOH
HOH
2031
B
HOH
2032
9
HOH
HOH
2032
B
HOH
2033
9
HOH
HOH
2033
B
HOH
2034
9
HOH
HOH
2034
B
HOH
2035
9
HOH
HOH
2035
B
HOH
2036
9
HOH
HOH
2036
B
HOH
2037
9
HOH
HOH
2037
B
HOH
2038
9
HOH
HOH
2038
B
HOH
2039
9
HOH
HOH
2039
B
HOH
2040
9
HOH
HOH
2040
B
HOH
2041
9
HOH
HOH
2041
B
HOH
2042
9
HOH
HOH
2042
B
HOH
2043
9
HOH
HOH
2043
B
HOH
2044
9
HOH
HOH
2044
B
HOH
2001
9
HOH
HOH
2001
C
n
1
24
A
n
2
25
A
n
3
26
A
n
4
27
A
n
5
28
A
n
6
29
A
n
7
30
A
n
8
31
A
n
9
32
A
n
10
33
A
n
11
34
A
ASP
35
n
12
ASP
35
A
LEU
36
n
13
LEU
36
A
THR
37
n
14
THR
37
A
ALA
38
n
15
ALA
38
A
PHE
39
n
16
PHE
39
A
ARG
40
n
17
ARG
40
A
GLU
41
n
18
GLU
41
A
HIS
42
n
19
HIS
42
A
PHE
43
n
20
PHE
43
A
ALA
44
n
21
ALA
44
A
LYS
45
n
22
LYS
45
A
ALA
46
n
23
ALA
46
A
LYS
47
n
24
LYS
47
A
HIS
48
n
25
HIS
48
A
ILE
49
n
26
ILE
49
A
ALA
50
n
27
ALA
50
A
ILE
51
n
28
ILE
51
A
ILE
52
n
29
ILE
52
A
THR
53
n
30
THR
53
A
GLY
54
n
31
GLY
54
A
ALA
55
n
32
ALA
55
A
GLY
56
n
33
GLY
56
A
VAL
57
n
34
VAL
57
A
SER
58
n
35
SER
58
A
ALA
59
n
36
ALA
59
A
GLU
60
n
37
GLU
60
A
SER
61
n
38
SER
61
A
GLY
62
n
39
GLY
62
A
VAL
63
n
40
VAL
63
A
PRO
64
n
41
PRO
64
A
THR
65
n
42
THR
65
A
PHE
66
n
43
PHE
66
A
ARG
67
n
44
ARG
67
A
GLY
68
n
45
GLY
68
A
PRO
69
n
46
PRO
69
A
GLY
70
n
47
GLY
70
A
GLY
71
n
48
GLY
71
A
PHE
72
n
49
PHE
72
A
TRP
73
n
50
TRP
73
A
ARG
74
n
51
ARG
74
A
LYS
75
n
52
LYS
75
A
TRP
76
n
53
TRP
76
A
GLN
77
n
54
GLN
77
A
ALA
78
n
55
ALA
78
A
GLN
79
n
56
GLN
79
A
ASP
80
n
57
ASP
80
A
LEU
81
n
58
LEU
81
A
ALA
82
n
59
ALA
82
A
THR
83
n
60
THR
83
A
PRO
84
n
61
PRO
84
A
GLU
85
n
62
GLU
85
A
ALA
86
n
63
ALA
86
A
PHE
87
n
64
PHE
87
A
SER
88
n
65
SER
88
A
ARG
89
n
66
ARG
89
A
ASP
90
n
67
ASP
90
A
PRO
91
n
68
PRO
91
A
SER
92
n
69
SER
92
A
LEU
93
n
70
LEU
93
A
VAL
94
n
71
VAL
94
A
TRP
95
n
72
TRP
95
A
GLU
96
n
73
GLU
96
A
PHE
97
n
74
PHE
97
A
TYR
98
n
75
TYR
98
A
HIS
99
n
76
HIS
99
A
TYR
100
n
77
TYR
100
A
ARG
101
n
78
ARG
101
A
ARG
102
n
79
ARG
102
A
GLU
103
n
80
GLU
103
A
VAL
104
n
81
VAL
104
A
MET
105
n
82
MET
105
A
ARG
106
n
83
ARG
106
A
SER
107
n
84
SER
107
A
LYS
108
n
85
LYS
108
A
MET
109
n
86
MET
109
A
PRO
110
n
87
PRO
110
A
ASN
111
n
88
ASN
111
A
PRO
112
n
89
PRO
112
A
ALA
113
n
90
ALA
113
A
HIS
114
n
91
HIS
114
A
LEU
115
n
92
LEU
115
A
ALA
116
n
93
ALA
116
A
ILE
117
n
94
ILE
117
A
ALA
118
n
95
ALA
118
A
GLU
119
n
96
GLU
119
A
CYS
120
n
97
CYS
120
A
GLU
121
n
98
GLU
121
A
ALA
122
n
99
ALA
122
A
ARG
123
n
100
ARG
123
A
LEU
124
n
101
LEU
124
A
GLY
125
n
102
GLY
125
A
GLN
126
n
103
GLN
126
A
GLN
127
n
104
GLN
127
A
GLY
128
n
105
GLY
128
A
ARG
129
n
106
ARG
129
A
SER
130
n
107
SER
130
A
VAL
131
n
108
VAL
131
A
VAL
132
n
109
VAL
132
A
ILE
133
n
110
ILE
133
A
ILE
134
n
111
ILE
134
A
THR
135
n
112
THR
135
A
GLN
136
n
113
GLN
136
A
ASN
137
n
114
ASN
137
A
ILE
138
n
115
ILE
138
A
ASP
139
n
116
ASP
139
A
GLU
140
n
117
GLU
140
A
LEU
141
n
118
LEU
141
A
HIS
142
n
119
HIS
142
A
HIS
143
n
120
HIS
143
A
ARG
144
n
121
ARG
144
A
ALA
145
n
122
ALA
145
A
GLY
146
n
123
GLY
146
A
SER
147
n
124
SER
147
A
LYS
148
n
125
LYS
148
A
HIS
149
n
126
HIS
149
A
VAL
150
n
127
VAL
150
A
TYR
151
n
128
TYR
151
A
GLU
152
n
129
GLU
152
A
ILE
153
n
130
ILE
153
A
HIS
154
n
131
HIS
154
A
GLY
155
n
132
GLY
155
A
SER
156
n
133
SER
156
A
LEU
157
n
134
LEU
157
A
PHE
158
n
135
PHE
158
A
LYS
159
n
136
LYS
159
A
THR
160
n
137
THR
160
A
ARG
161
n
138
ARG
161
A
CYS
162
n
139
CYS
162
A
MET
163
n
140
MET
163
A
SER
164
n
141
SER
164
A
CYS
165
n
142
CYS
165
A
GLY
166
n
143
GLY
166
A
GLU
167
n
144
GLU
167
A
VAL
168
n
145
VAL
168
A
LYS
169
n
146
LYS
169
A
ALA
170
n
147
ALA
170
A
ASN
171
n
148
ASN
171
A
HIS
172
n
149
HIS
172
A
LYS
173
n
150
LYS
173
A
SER
174
n
151
SER
174
A
PRO
175
n
152
PRO
175
A
ILE
176
n
153
ILE
176
A
CYS
177
n
154
CYS
177
A
PRO
178
n
155
PRO
178
A
ALA
179
n
156
ALA
179
A
LEU
180
n
157
LEU
180
A
ASP
181
n
158
ASP
181
A
GLY
182
n
159
GLY
182
A
LYS
183
n
160
LYS
183
A
GLY
184
n
161
GLY
184
A
ALA
185
n
162
ALA
185
A
PRO
186
n
163
PRO
186
A
ASP
187
n
164
ASP
187
A
PRO
188
n
165
PRO
188
A
ASN
189
n
166
ASN
189
A
THR
190
n
167
THR
190
A
LYS
191
n
168
LYS
191
A
GLU
192
n
169
GLU
192
A
ALA
193
n
170
ALA
193
A
ARG
194
n
171
ARG
194
A
ILE
195
n
172
ILE
195
A
PRO
196
n
173
PRO
196
A
VAL
197
n
174
VAL
197
A
GLU
198
n
175
GLU
198
A
LEU
199
n
176
LEU
199
A
LEU
200
n
177
LEU
200
A
PRO
201
n
178
PRO
201
A
ARG
202
n
179
ARG
202
A
CYS
203
n
180
CYS
203
A
GLU
204
n
181
GLU
204
A
ARG
205
n
182
ARG
205
A
LYS
206
n
183
LYS
206
A
SER
207
n
184
SER
207
A
CYS
208
n
185
CYS
208
A
ASN
209
n
186
ASN
209
A
GLY
210
n
187
GLY
210
A
LEU
211
n
188
LEU
211
A
LEU
212
n
189
LEU
212
A
ARG
213
n
190
ARG
213
A
PRO
214
n
191
PRO
214
A
HIS
215
n
192
HIS
215
A
VAL
216
n
193
VAL
216
A
VAL
217
n
194
VAL
217
A
TRP
218
n
195
TRP
218
A
PHE
219
n
196
PHE
219
A
GLY
220
n
197
GLY
220
A
GLU
221
n
198
GLU
221
A
THR
222
n
199
THR
222
A
LEU
223
n
200
LEU
223
A
ASP
224
n
201
ASP
224
A
SER
225
n
202
SER
225
A
ASP
226
n
203
ASP
226
A
ILE
227
n
204
ILE
227
A
LEU
228
n
205
LEU
228
A
THR
229
n
206
THR
229
A
ALA
230
n
207
ALA
230
A
VAL
231
n
208
VAL
231
A
GLU
232
n
209
GLU
232
A
ARG
233
n
210
ARG
233
A
GLU
234
n
211
GLU
234
A
LEU
235
n
212
LEU
235
A
GLU
236
n
213
GLU
236
A
LYS
237
n
214
LYS
237
A
CYS
238
n
215
CYS
238
A
ASP
239
n
216
ASP
239
A
LEU
240
n
217
LEU
240
A
CYS
241
n
218
CYS
241
A
LEU
242
n
219
LEU
242
A
VAL
243
n
220
VAL
243
A
VAL
244
n
221
VAL
244
A
GLY
245
n
222
GLY
245
A
THR
246
n
223
THR
246
A
SER
247
n
224
SER
247
A
SER
248
n
225
SER
248
A
ILE
249
n
226
ILE
249
A
VAL
250
n
227
VAL
250
A
TYR
251
n
228
TYR
251
A
PRO
252
n
229
PRO
252
A
ALA
253
n
230
ALA
253
A
ALA
254
n
231
ALA
254
A
MET
255
n
232
MET
255
A
PHE
256
n
233
PHE
256
A
ALA
257
n
234
ALA
257
A
PRO
258
n
235
PRO
258
A
GLN
259
n
236
GLN
259
A
VAL
260
n
237
VAL
260
A
ALA
261
n
238
ALA
261
A
SER
262
n
239
SER
262
A
ARG
263
n
240
ARG
263
A
GLY
264
n
241
GLY
264
A
VAL
265
n
242
VAL
265
A
PRO
266
n
243
PRO
266
A
VAL
267
n
244
VAL
267
A
ALA
268
n
245
ALA
268
A
GLU
269
n
246
GLU
269
A
PHE
270
n
247
PHE
270
A
ASN
271
n
248
ASN
271
A
MET
272
n
249
MET
272
A
GLU
273
n
250
GLU
273
A
CYS
274
n
251
CYS
274
A
n
252
275
A
n
253
276
A
n
254
277
A
n
255
278
A
n
256
279
A
n
257
280
A
n
258
281
A
LYS
282
n
259
LYS
282
A
TYR
283
n
260
TYR
283
A
HIS
284
n
261
HIS
284
A
PHE
285
n
262
PHE
285
A
GLU
286
n
263
GLU
286
A
GLY
287
n
264
GLY
287
A
PRO
288
n
265
PRO
288
A
CYS
289
n
266
CYS
289
A
GLY
290
n
267
GLY
290
A
SER
291
n
268
SER
291
A
THR
292
n
269
THR
292
A
LEU
293
n
270
LEU
293
A
PRO
294
n
271
PRO
294
A
PRO
295
n
272
PRO
295
A
ALA
296
n
273
ALA
296
A
LEU
297
n
274
LEU
297
A
GLU
298
n
275
GLU
298
A
n
1
24
B
n
2
25
B
n
3
26
B
n
4
27
B
n
5
28
B
n
6
29
B
n
7
30
B
n
8
31
B
n
9
32
B
SER
33
n
10
SER
33
B
SER
34
n
11
SER
34
B
ASP
35
n
12
ASP
35
B
LEU
36
n
13
LEU
36
B
THR
37
n
14
THR
37
B
ALA
38
n
15
ALA
38
B
PHE
39
n
16
PHE
39
B
ARG
40
n
17
ARG
40
B
GLU
41
n
18
GLU
41
B
HIS
42
n
19
HIS
42
B
PHE
43
n
20
PHE
43
B
ALA
44
n
21
ALA
44
B
LYS
45
n
22
LYS
45
B
ALA
46
n
23
ALA
46
B
LYS
47
n
24
LYS
47
B
HIS
48
n
25
HIS
48
B
ILE
49
n
26
ILE
49
B
ALA
50
n
27
ALA
50
B
ILE
51
n
28
ILE
51
B
ILE
52
n
29
ILE
52
B
THR
53
n
30
THR
53
B
GLY
54
n
31
GLY
54
B
ALA
55
n
32
ALA
55
B
GLY
56
n
33
GLY
56
B
VAL
57
n
34
VAL
57
B
SER
58
n
35
SER
58
B
ALA
59
n
36
ALA
59
B
GLU
60
n
37
GLU
60
B
SER
61
n
38
SER
61
B
GLY
62
n
39
GLY
62
B
VAL
63
n
40
VAL
63
B
PRO
64
n
41
PRO
64
B
THR
65
n
42
THR
65
B
PHE
66
n
43
PHE
66
B
ARG
67
n
44
ARG
67
B
GLY
68
n
45
GLY
68
B
PRO
69
n
46
PRO
69
B
GLY
70
n
47
GLY
70
B
GLY
71
n
48
GLY
71
B
PHE
72
n
49
PHE
72
B
TRP
73
n
50
TRP
73
B
ARG
74
n
51
ARG
74
B
LYS
75
n
52
LYS
75
B
TRP
76
n
53
TRP
76
B
GLN
77
n
54
GLN
77
B
ALA
78
n
55
ALA
78
B
GLN
79
n
56
GLN
79
B
ASP
80
n
57
ASP
80
B
LEU
81
n
58
LEU
81
B
ALA
82
n
59
ALA
82
B
THR
83
n
60
THR
83
B
PRO
84
n
61
PRO
84
B
GLU
85
n
62
GLU
85
B
ALA
86
n
63
ALA
86
B
PHE
87
n
64
PHE
87
B
SER
88
n
65
SER
88
B
ARG
89
n
66
ARG
89
B
ASP
90
n
67
ASP
90
B
PRO
91
n
68
PRO
91
B
SER
92
n
69
SER
92
B
LEU
93
n
70
LEU
93
B
VAL
94
n
71
VAL
94
B
TRP
95
n
72
TRP
95
B
GLU
96
n
73
GLU
96
B
PHE
97
n
74
PHE
97
B
TYR
98
n
75
TYR
98
B
HIS
99
n
76
HIS
99
B
TYR
100
n
77
TYR
100
B
ARG
101
n
78
ARG
101
B
ARG
102
n
79
ARG
102
B
GLU
103
n
80
GLU
103
B
VAL
104
n
81
VAL
104
B
MET
105
n
82
MET
105
B
ARG
106
n
83
ARG
106
B
SER
107
n
84
SER
107
B
LYS
108
n
85
LYS
108
B
MET
109
n
86
MET
109
B
PRO
110
n
87
PRO
110
B
ASN
111
n
88
ASN
111
B
PRO
112
n
89
PRO
112
B
ALA
113
n
90
ALA
113
B
HIS
114
n
91
HIS
114
B
LEU
115
n
92
LEU
115
B
ALA
116
n
93
ALA
116
B
ILE
117
n
94
ILE
117
B
ALA
118
n
95
ALA
118
B
GLU
119
n
96
GLU
119
B
CYS
120
n
97
CYS
120
B
GLU
121
n
98
GLU
121
B
ALA
122
n
99
ALA
122
B
ARG
123
n
100
ARG
123
B
LEU
124
n
101
LEU
124
B
GLY
125
n
102
GLY
125
B
GLN
126
n
103
GLN
126
B
GLN
127
n
104
GLN
127
B
GLY
128
n
105
GLY
128
B
ARG
129
n
106
ARG
129
B
SER
130
n
107
SER
130
B
VAL
131
n
108
VAL
131
B
VAL
132
n
109
VAL
132
B
ILE
133
n
110
ILE
133
B
ILE
134
n
111
ILE
134
B
THR
135
n
112
THR
135
B
GLN
136
n
113
GLN
136
B
ASN
137
n
114
ASN
137
B
ILE
138
n
115
ILE
138
B
ASP
139
n
116
ASP
139
B
GLU
140
n
117
GLU
140
B
LEU
141
n
118
LEU
141
B
HIS
142
n
119
HIS
142
B
HIS
143
n
120
HIS
143
B
ARG
144
n
121
ARG
144
B
ALA
145
n
122
ALA
145
B
GLY
146
n
123
GLY
146
B
SER
147
n
124
SER
147
B
LYS
148
n
125
LYS
148
B
HIS
149
n
126
HIS
149
B
VAL
150
n
127
VAL
150
B
TYR
151
n
128
TYR
151
B
GLU
152
n
129
GLU
152
B
ILE
153
n
130
ILE
153
B
HIS
154
n
131
HIS
154
B
GLY
155
n
132
GLY
155
B
SER
156
n
133
SER
156
B
LEU
157
n
134
LEU
157
B
PHE
158
n
135
PHE
158
B
LYS
159
n
136
LYS
159
B
THR
160
n
137
THR
160
B
ARG
161
n
138
ARG
161
B
CYS
162
n
139
CYS
162
B
MET
163
n
140
MET
163
B
SER
164
n
141
SER
164
B
CYS
165
n
142
CYS
165
B
GLY
166
n
143
GLY
166
B
GLU
167
n
144
GLU
167
B
VAL
168
n
145
VAL
168
B
LYS
169
n
146
LYS
169
B
ALA
170
n
147
ALA
170
B
ASN
171
n
148
ASN
171
B
HIS
172
n
149
HIS
172
B
LYS
173
n
150
LYS
173
B
SER
174
n
151
SER
174
B
PRO
175
n
152
PRO
175
B
ILE
176
n
153
ILE
176
B
CYS
177
n
154
CYS
177
B
PRO
178
n
155
PRO
178
B
ALA
179
n
156
ALA
179
B
LEU
180
n
157
LEU
180
B
ASP
181
n
158
ASP
181
B
GLY
182
n
159
GLY
182
B
LYS
183
n
160
LYS
183
B
GLY
184
n
161
GLY
184
B
ALA
185
n
162
ALA
185
B
PRO
186
n
163
PRO
186
B
ASP
187
n
164
ASP
187
B
PRO
188
n
165
PRO
188
B
ASN
189
n
166
ASN
189
B
THR
190
n
167
THR
190
B
LYS
191
n
168
LYS
191
B
GLU
192
n
169
GLU
192
B
ALA
193
n
170
ALA
193
B
ARG
194
n
171
ARG
194
B
ILE
195
n
172
ILE
195
B
PRO
196
n
173
PRO
196
B
VAL
197
n
174
VAL
197
B
GLU
198
n
175
GLU
198
B
LEU
199
n
176
LEU
199
B
LEU
200
n
177
LEU
200
B
PRO
201
n
178
PRO
201
B
ARG
202
n
179
ARG
202
B
CYS
203
n
180
CYS
203
B
GLU
204
n
181
GLU
204
B
ARG
205
n
182
ARG
205
B
LYS
206
n
183
LYS
206
B
SER
207
n
184
SER
207
B
CYS
208
n
185
CYS
208
B
ASN
209
n
186
ASN
209
B
GLY
210
n
187
GLY
210
B
LEU
211
n
188
LEU
211
B
LEU
212
n
189
LEU
212
B
ARG
213
n
190
ARG
213
B
PRO
214
n
191
PRO
214
B
HIS
215
n
192
HIS
215
B
VAL
216
n
193
VAL
216
B
VAL
217
n
194
VAL
217
B
TRP
218
n
195
TRP
218
B
PHE
219
n
196
PHE
219
B
GLY
220
n
197
GLY
220
B
GLU
221
n
198
GLU
221
B
THR
222
n
199
THR
222
B
LEU
223
n
200
LEU
223
B
ASP
224
n
201
ASP
224
B
SER
225
n
202
SER
225
B
ASP
226
n
203
ASP
226
B
ILE
227
n
204
ILE
227
B
LEU
228
n
205
LEU
228
B
THR
229
n
206
THR
229
B
ALA
230
n
207
ALA
230
B
VAL
231
n
208
VAL
231
B
GLU
232
n
209
GLU
232
B
ARG
233
n
210
ARG
233
B
GLU
234
n
211
GLU
234
B
LEU
235
n
212
LEU
235
B
GLU
236
n
213
GLU
236
B
LYS
237
n
214
LYS
237
B
CYS
238
n
215
CYS
238
B
ASP
239
n
216
ASP
239
B
LEU
240
n
217
LEU
240
B
CYS
241
n
218
CYS
241
B
LEU
242
n
219
LEU
242
B
VAL
243
n
220
VAL
243
B
VAL
244
n
221
VAL
244
B
GLY
245
n
222
GLY
245
B
THR
246
n
223
THR
246
B
SER
247
n
224
SER
247
B
SER
248
n
225
SER
248
B
ILE
249
n
226
ILE
249
B
VAL
250
n
227
VAL
250
B
TYR
251
n
228
TYR
251
B
PRO
252
n
229
PRO
252
B
ALA
253
n
230
ALA
253
B
ALA
254
n
231
ALA
254
B
MET
255
n
232
MET
255
B
PHE
256
n
233
PHE
256
B
ALA
257
n
234
ALA
257
B
PRO
258
n
235
PRO
258
B
GLN
259
n
236
GLN
259
B
VAL
260
n
237
VAL
260
B
ALA
261
n
238
ALA
261
B
SER
262
n
239
SER
262
B
ARG
263
n
240
ARG
263
B
GLY
264
n
241
GLY
264
B
VAL
265
n
242
VAL
265
B
PRO
266
n
243
PRO
266
B
VAL
267
n
244
VAL
267
B
ALA
268
n
245
ALA
268
B
GLU
269
n
246
GLU
269
B
PHE
270
n
247
PHE
270
B
ASN
271
n
248
ASN
271
B
MET
272
n
249
MET
272
B
GLU
273
n
250
GLU
273
B
n
251
274
B
n
252
275
B
n
253
276
B
n
254
277
B
n
255
278
B
n
256
279
B
n
257
280
B
PHE
281
n
258
PHE
281
B
LYS
282
n
259
LYS
282
B
TYR
283
n
260
TYR
283
B
HIS
284
n
261
HIS
284
B
PHE
285
n
262
PHE
285
B
GLU
286
n
263
GLU
286
B
GLY
287
n
264
GLY
287
B
PRO
288
n
265
PRO
288
B
CYS
289
n
266
CYS
289
B
GLY
290
n
267
GLY
290
B
SER
291
n
268
SER
291
B
THR
292
n
269
THR
292
B
LEU
293
n
270
LEU
293
B
PRO
294
n
271
PRO
294
B
PRO
295
n
272
PRO
295
B
ALA
296
n
273
ALA
296
B
LEU
297
n
274
LEU
297
B
GLU
298
n
275
GLU
298
B
BEZ
0
n
1
BEZ
0
C
GLY
1
n
2
GLY
1
C
VAL
2
n
3
VAL
2
C
LEU
3
n
4
LEU
3
C
LYS
4
n
5
LYS
4
C
GLU
5
n
6
GLU
5
C
TYR
6
n
7
TYR
6
C
GLY
7
n
8
GLY
7
C
VAL
8
n
9
VAL
8
C
1.4210
0.2270
-0.5423
0.3531
-0.1035
0.3470
-0.0498
0.1125
-0.1401
0.0221
0.0236
-0.0001
0.0326
0.0143
0.0262
0.0496
0.0168
-0.0084
0.1278
0.0084
0.0363
refined
25.0052
27.4159
-7.0245
X-RAY DIFFRACTION
1.1989
0.3234
0.3222
0.2165
-0.0449
0.9044
0.0086
0.0830
-0.0103
0.1013
0.0066
-0.0173
0.0535
-0.0008
-0.0152
0.1102
-0.0282
-0.0179
0.1181
0.0124
0.0037
refined
-1.5314
32.0864
-26.3272
X-RAY DIFFRACTION
A
35
A
298
X-RAY DIFFRACTION
1
B
33
B
298
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
1
monomeric
1590
-4.8
13000
A
CYS
162
A
SG
CYS
139
1_555
A
ZN
1299
D
ZN
ZN
1_555
A
CYS
165
A
SG
CYS
142
1_555
102.2
A
CYS
162
A
SG
CYS
139
1_555
A
ZN
1299
D
ZN
ZN
1_555
A
CYS
203
A
SG
CYS
180
1_555
107.5
A
CYS
165
A
SG
CYS
142
1_555
A
ZN
1299
D
ZN
ZN
1_555
A
CYS
203
A
SG
CYS
180
1_555
115.7
A
CYS
162
A
SG
CYS
139
1_555
A
ZN
1299
D
ZN
ZN
1_555
A
CYS
208
A
SG
CYS
185
1_555
100.7
A
CYS
165
A
SG
CYS
142
1_555
A
ZN
1299
D
ZN
ZN
1_555
A
CYS
208
A
SG
CYS
185
1_555
119.1
A
CYS
203
A
SG
CYS
180
1_555
A
ZN
1299
D
ZN
ZN
1_555
A
CYS
208
A
SG
CYS
185
1_555
109.6
B
CYS
162
B
SG
CYS
139
1_555
B
ZN
1299
E
ZN
ZN
1_555
B
CYS
165
B
SG
CYS
142
1_555
108.7
B
CYS
162
B
SG
CYS
139
1_555
B
ZN
1299
E
ZN
ZN
1_555
B
CYS
203
B
SG
CYS
180
1_555
109.2
B
CYS
165
B
SG
CYS
142
1_555
B
ZN
1299
E
ZN
ZN
1_555
B
CYS
203
B
SG
CYS
180
1_555
117.2
B
CYS
162
B
SG
CYS
139
1_555
B
ZN
1299
E
ZN
ZN
1_555
B
CYS
208
B
SG
CYS
185
1_555
96.8
B
CYS
165
B
SG
CYS
142
1_555
B
ZN
1299
E
ZN
ZN
1_555
B
CYS
208
B
SG
CYS
185
1_555
115.4
B
CYS
203
B
SG
CYS
180
1_555
B
ZN
1299
E
ZN
ZN
1_555
B
CYS
208
B
SG
CYS
185
1_555
107.6
B
ASP
224
B
OD2
ASP
201
12_564
B
NA
1302
H
NA
NA
1_555
B
ASP
224
B
OD2
ASP
201
1_555
175.6
B
ASP
224
B
OD2
ASP
201
12_564
B
NA
1302
H
NA
NA
1_555
B
ASP
226
B
OD2
ASP
203
1_555
80.7
B
ASP
224
B
OD2
ASP
201
1_555
B
NA
1302
H
NA
NA
1_555
B
ASP
226
B
OD2
ASP
203
1_555
102.0
B
ASP
224
B
OD2
ASP
201
12_564
B
NA
1302
H
NA
NA
1_555
B
ASP
226
B
OD2
ASP
203
12_564
101.9
B
ASP
224
B
OD2
ASP
201
1_555
B
NA
1302
H
NA
NA
1_555
B
ASP
226
B
OD2
ASP
203
12_564
80.6
B
ASP
226
B
OD2
ASP
203
1_555
B
NA
1302
H
NA
NA
1_555
B
ASP
226
B
OD2
ASP
203
12_564
109.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
151
A
N
TYR
128
A
O
ILE
133
A
O
ILE
110
A
N
VAL
132
A
N
VAL
109
A
O
ILE
49
A
O
ILE
26
A
N
ALA
50
A
N
ALA
27
A
O
LEU
240
A
O
LEU
217
A
N
VAL
243
A
N
VAL
220
A
O
ALA
268
A
O
ALA
245
A
N
GLU
269
A
N
GLU
246
A
O
TYR
283
A
O
TYR
260
A
N
LYS
169
A
N
LYS
146
A
O
THR
160
A
O
THR
137
A
N
ARG
161
A
N
ARG
138
A
O
ARG
213
A
O
ARG
190
B
N
TYR
151
B
N
TYR
128
B
O
ILE
133
B
O
ILE
110
B
N
VAL
132
B
N
VAL
109
B
O
ILE
49
B
O
ILE
26
B
N
ALA
50
B
N
ALA
27
B
O
LEU
240
B
O
LEU
217
B
N
VAL
243
B
N
VAL
220
B
O
ALA
268
B
O
ALA
245
B
N
GLU
269
B
N
GLU
246
B
O
TYR
283
B
O
TYR
260
B
N
LYS
169
B
N
LYS
146
B
O
THR
160
B
O
THR
137
B
N
ARG
161
B
N
ARG
138
B
O
ARG
213
B
O
ARG
190
1
B
NA
1302
H
NA
1
A
GLY
24
A
GLY
1
1
Y
1
A
ILE
25
A
ILE
2
1
Y
1
A
ASP
26
A
ASP
3
1
Y
1
A
PRO
27
A
PRO
4
1
Y
1
A
PHE
28
A
PHE
5
1
Y
1
A
THR
29
A
THR
6
1
Y
1
A
THR
30
A
THR
7
1
Y
1
A
ARG
31
A
ARG
8
1
Y
1
A
PRO
32
A
PRO
9
1
Y
1
A
SER
33
A
SER
10
1
Y
1
A
SER
34
A
SER
11
1
Y
1
A
THR
275
A
THR
252
1
Y
1
A
PRO
276
A
PRO
253
1
Y
1
A
ALA
277
A
ALA
254
1
Y
1
A
THR
278
A
THR
255
1
Y
1
A
GLN
279
A
GLN
256
1
Y
1
A
ARG
280
A
ARG
257
1
Y
1
A
PHE
281
A
PHE
258
1
Y
1
B
GLY
24
B
GLY
1
1
Y
1
B
ILE
25
B
ILE
2
1
Y
1
B
ASP
26
B
ASP
3
1
Y
1
B
PRO
27
B
PRO
4
1
Y
1
B
PHE
28
B
PHE
5
1
Y
1
B
THR
29
B
THR
6
1
Y
1
B
THR
30
B
THR
7
1
Y
1
B
ARG
31
B
ARG
8
1
Y
1
B
PRO
32
B
PRO
9
1
Y
1
B
CYS
274
B
CYS
251
1
Y
1
B
THR
275
B
THR
252
1
Y
1
B
PRO
276
B
PRO
253
1
Y
1
B
ALA
277
B
ALA
254
1
Y
1
B
THR
278
B
THR
255
1
Y
1
B
GLN
279
B
GLN
256
1
Y
1
B
ARG
280
B
ARG
257
1
Y
1
A
A
GLY
PRO
68
69
-148.80
1
6.06
0.90
118.30
124.36
A
A
A
CB
CG
OD1
ASP
ASP
ASP
187
187
187
N
1
A
PHE
66
71.11
33.27
1
A
PRO
69
-66.89
82.46
1
A
ARG
74
48.47
-132.65
1
A
GLU
140
59.39
15.76
1
A
CYS
208
-95.21
-70.08
1
A
THR
246
-174.59
-172.65
1
A
MET
272
-100.95
55.15
1
B
ARG
74
47.67
-132.30
1
B
GLU
140
59.12
16.25
1
B
THR
246
-172.96
-172.84
1
C
GLU
5
A
56.46
16.18
1
C
GLU
5
B
51.25
17.97
44.052
0.10
0.05
0.00
0.10
0.00
-0.31
0.947
0.942
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED. STRUCTURE WAS REFINED USING PROSMART WITH PDB-ID 3RIY R.A. NICHOLLS, F. LONG AND G.N. MURSHUDOV 2012 LOW RESOLUTION REFINEMENT TOOLS IN REFMAC5. ACTA CRYST. D. MISSING N-TERMINAL RESIDUES ARE DISORDERED RESIDUES A275 TO A281 ARE DISORDERED RESIDUES B274 TO B280 ARE DISORDERED
0.22699
0.19696
0.19845
2.40
47.85
1427
27570
4.9
99.91
14.892
0.171
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.314
0.220
0.80
0.80
1.20
PDB ENTRY 2NYR
MAXIMUM LIKELIHOOD
MASK
2.40
47.85
134
4259
48
0
4077
0.016
0.019
4327
0.006
0.020
4086
1.922
1.968
5855
1.324
3.005
9416
6.174
5.000
530
33.979
22.781
187
16.120
15.000
688
23.367
15.000
34
0.118
0.200
624
0.010
0.021
4832
0.005
0.020
1004
2.786
3.243
2129
2.785
3.241
2128
4.376
4.845
2653
3.512
3.663
2198
0.348
0.281
2.462
105
1955
20
99.76
2.40
100.00
4UTV
28997
2.0
0.12
1
14.40
7.1
99.9
1.20
2.40
2.46
1.94
1
7.3
100.0
refinement
REFMAC
5.8.0073
data reduction
XDS
data scaling
XSCALE
phasing
MOLREP
Crystal structure of zebrafish Sirtuin 5 in complex with 3-phenyl- succinylated CPS1-peptide
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
8
N
N
9
N
N
9
N
N
9
N
N
A
ASP
35
A
ASP
12
HELX_P
A
ALA
46
A
ALA
23
1
1
12
A
GLY
54
A
GLY
31
HELX_P
A
GLU
60
A
GLU
37
1
2
7
A
GLN
77
A
GLN
54
HELX_P
A
ALA
82
A
ALA
59
1
3
6
A
THR
83
A
THR
60
HELX_P
A
ASP
90
A
ASP
67
1
4
8
A
ASP
90
A
ASP
67
HELX_P
A
MET
105
A
MET
82
1
5
16
A
ARG
106
A
ARG
83
HELX_P
A
LYS
108
A
LYS
85
5
6
3
A
ASN
111
A
ASN
88
HELX_P
A
GLN
127
A
GLN
104
1
7
17
A
GLU
140
A
GLU
117
HELX_P
A
ALA
145
A
ALA
122
1
8
6
A
CYS
177
A
CYS
154
HELX_P
A
ASP
181
A
ASP
158
5
9
5
A
PRO
196
A
PRO
173
HELX_P
A
LEU
200
A
LEU
177
5
10
5
A
ASP
224
A
ASP
201
HELX_P
A
CYS
238
A
CYS
215
1
11
15
A
PRO
252
A
PRO
229
HELX_P
A
MET
255
A
MET
232
5
12
4
A
PHE
256
A
PHE
233
HELX_P
A
ARG
263
A
ARG
240
1
13
8
A
PRO
288
A
PRO
265
HELX_P
A
GLU
298
A
GLU
275
1
14
11
B
ASP
35
B
ASP
12
HELX_P
B
ALA
46
B
ALA
23
1
15
12
B
GLY
54
B
GLY
31
HELX_P
B
GLU
60
B
GLU
37
1
16
7
B
GLN
77
B
GLN
54
HELX_P
B
ALA
82
B
ALA
59
1
17
6
B
THR
83
B
THR
60
HELX_P
B
ASP
90
B
ASP
67
1
18
8
B
ASP
90
B
ASP
67
HELX_P
B
MET
105
B
MET
82
1
19
16
B
ARG
106
B
ARG
83
HELX_P
B
LYS
108
B
LYS
85
5
20
3
B
ASN
111
B
ASN
88
HELX_P
B
GLN
126
B
GLN
103
1
21
16
B
GLU
140
B
GLU
117
HELX_P
B
ALA
145
B
ALA
122
1
22
6
B
CYS
177
B
CYS
154
HELX_P
B
ASP
181
B
ASP
158
5
23
5
B
PRO
196
B
PRO
173
HELX_P
B
LEU
200
B
LEU
177
5
24
5
B
ASP
224
B
ASP
201
HELX_P
B
CYS
238
B
CYS
215
1
25
15
B
PRO
252
B
PRO
229
HELX_P
B
MET
255
B
MET
232
5
26
4
B
PHE
256
B
PHE
233
HELX_P
B
ARG
263
B
ARG
240
1
27
8
B
PRO
288
B
PRO
265
HELX_P
B
GLU
298
B
GLU
275
1
28
11
C
LYS
4
C
LYS
5
HELX_P
C
VAL
8
C
VAL
9
5
29
5
covale
1.377
both
B
B
C
BEZ
0
C
C
BEZ
1
1_555
C
GLY
1
C
N
GLY
2
1_555
covale
1.374
both
A
A
C
BEZ
0
C
C
BEZ
1
1_555
C
GLY
1
C
N
GLY
2
1_555
covale
1.355
one
A
A
C
LYS
4
C
NZ
LYS
5
1_555
C
FSL
1004
I
CAJ
FSL
1_555
covale
1.344
one
B
B
C
LYS
4
C
NZ
LYS
5
1_555
C
F9V
1005
J
CAJ
F9V
1_555
metalc
2.290
A
CYS
162
A
SG
CYS
139
1_555
A
ZN
1299
D
ZN
ZN
1_555
metalc
2.322
A
CYS
165
A
SG
CYS
142
1_555
A
ZN
1299
D
ZN
ZN
1_555
metalc
2.327
A
CYS
203
A
SG
CYS
180
1_555
A
ZN
1299
D
ZN
ZN
1_555
metalc
2.305
A
CYS
208
A
SG
CYS
185
1_555
A
ZN
1299
D
ZN
ZN
1_555
metalc
2.312
B
CYS
162
B
SG
CYS
139
1_555
B
ZN
1299
E
ZN
ZN
1_555
metalc
2.286
B
CYS
165
B
SG
CYS
142
1_555
B
ZN
1299
E
ZN
ZN
1_555
metalc
2.318
B
CYS
203
B
SG
CYS
180
1_555
B
ZN
1299
E
ZN
ZN
1_555
metalc
2.330
B
CYS
208
B
SG
CYS
185
1_555
B
ZN
1299
E
ZN
ZN
1_555
metalc
2.580
B
ASP
224
B
OD2
ASP
201
12_564
B
NA
1302
H
NA
NA
1_555
metalc
2.581
B
ASP
224
B
OD2
ASP
201
1_555
B
NA
1302
H
NA
NA
1_555
metalc
3.141
B
ASP
226
B
OD2
ASP
203
1_555
B
NA
1302
H
NA
NA
1_555
metalc
3.145
B
ASP
226
B
OD2
ASP
203
12_564
B
NA
1302
H
NA
NA
1_555
HYDROLASE
HYDROLASE, REGULATORY ENZYME, DEACYLASE, MITOCHONDRIAL, ROSSMANN-FOLD, ZINC-BINDING
A
SER
174
A
SER
151
1
A
PRO
175
A
PRO
152
-5.26
A
TYR
251
A
TYR
228
1
A
PRO
252
A
PRO
229
8.17
B
SER
174
B
SER
151
1
B
PRO
175
B
PRO
152
-6.28
B
TYR
251
B
TYR
228
1
B
PRO
252
B
PRO
229
2.40
given
-0.821610
-0.466880
-0.327070
-0.449190
0.176990
0.875730
-0.350970
0.866430
-0.355140
29.37958
44.57536
-43.68030
SIR5_DANRE
UNP
1
Q6DHI5
Q5R209_HUMAN
UNP
2
Q5R209
30
298
4UTV
30
298
Q6DHI5
A
1
7
275
30
298
4UTV
30
298
Q6DHI5
B
1
7
275
524
531
4UTV
1
8
Q5R209
C
2
2
9
1
expression tag
GLY
24
4UTV
A
Q6DHI5
UNP
1
1
expression tag
ILE
25
4UTV
A
Q6DHI5
UNP
2
1
expression tag
ASP
26
4UTV
A
Q6DHI5
UNP
3
1
expression tag
PRO
27
4UTV
A
Q6DHI5
UNP
4
1
expression tag
PHE
28
4UTV
A
Q6DHI5
UNP
5
1
expression tag
THR
29
4UTV
A
Q6DHI5
UNP
6
2
expression tag
GLY
24
4UTV
B
Q6DHI5
UNP
1
2
expression tag
ILE
25
4UTV
B
Q6DHI5
UNP
2
2
expression tag
ASP
26
4UTV
B
Q6DHI5
UNP
3
2
expression tag
PRO
27
4UTV
B
Q6DHI5
UNP
4
2
expression tag
PHE
28
4UTV
B
Q6DHI5
UNP
5
2
expression tag
THR
29
4UTV
B
Q6DHI5
UNP
6
3
modified residue
BEZ
0
4UTV
C
Q5R209
UNP
1
6
3
6
3
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
VAL
150
A
VAL
127
A
GLU
152
A
GLU
129
A
SER
130
A
SER
107
A
THR
135
A
THR
112
A
HIS
48
A
HIS
25
A
THR
53
A
THR
30
A
LEU
240
A
LEU
217
A
VAL
244
A
VAL
221
A
VAL
267
A
VAL
244
A
ASN
271
A
ASN
248
A
TYR
283
A
TYR
260
A
GLU
286
A
GLU
263
A
VAL
168
A
VAL
145
A
ALA
170
A
ALA
147
A
GLY
155
A
GLY
132
A
CYS
162
A
CYS
139
A
LEU
212
A
LEU
189
A
VAL
216
A
VAL
193
B
VAL
150
B
VAL
127
B
GLU
152
B
GLU
129
B
SER
130
B
SER
107
B
THR
135
B
THR
112
B
HIS
48
B
HIS
25
B
THR
53
B
THR
30
B
LEU
240
B
LEU
217
B
VAL
244
B
VAL
221
B
VAL
267
B
VAL
244
B
ASN
271
B
ASN
248
B
TYR
283
B
TYR
260
B
GLU
286
B
GLU
263
B
VAL
168
B
VAL
145
B
ALA
170
B
ALA
147
B
GLY
155
B
GLY
132
B
CYS
162
B
CYS
139
B
LEU
212
B
LEU
189
B
VAL
216
B
VAL
193
BINDING SITE FOR RESIDUE ZN A 1299
A
ZN
1299
Software
4
BINDING SITE FOR RESIDUE ZN B 1299
B
ZN
1299
Software
4
BINDING SITE FOR RESIDUE EPE B 1300
B
EPE
1300
Software
10
BINDING SITE FOR RESIDUE DMS B 1301
B
DMS
1301
Software
4
BINDING SITE FOR RESIDUE NA B 1302
B
NA
1302
Software
4
BINDING SITE FOR RESIDUE FSL C 1004
C
FSL
1004
Software
9
BINDING SITE FOR RESIDUE F9V C 1005
C
F9V
1005
Software
11
A
CYS
162
A
CYS
139
4
1_555
A
CYS
165
A
CYS
142
4
1_555
A
CYS
203
A
CYS
180
4
1_555
A
CYS
208
A
CYS
185
4
1_555
B
CYS
162
B
CYS
139
4
1_555
B
CYS
165
B
CYS
142
4
1_555
B
CYS
203
B
CYS
180
4
1_555
B
CYS
208
B
CYS
185
4
1_555
A
THR
229
A
THR
206
10
6_554
A
GLU
232
A
GLU
209
10
6_554
B
ALA
78
B
ALA
55
10
1_555
B
TYR
98
B
TYR
75
10
1_555
B
ARG
101
B
ARG
78
10
1_555
B
HIS
154
B
HIS
131
10
1_555
B
VAL
217
B
VAL
194
10
1_555
B
PHE
219
B
PHE
196
10
1_555
B
GLU
221
B
GLU
198
10
1_555
B
TYR
251
B
TYR
228
10
1_555
A
ARG
144
A
ARG
121
4
1_555
A
ALA
145
A
ALA
122
4
1_555
B
ARG
144
B
ARG
121
4
1_555
B
ALA
145
B
ALA
122
4
1_555
B
ASP
224
B
ASP
201
4
1_555
B
ASP
224
B
ASP
201
4
12_564
B
ASP
226
B
ASP
203
4
1_555
B
ASP
226
B
ASP
203
4
12_564
A
ALA
82
A
ALA
59
9
1_555
A
TYR
98
A
TYR
75
9
1_555
A
ARG
101
A
ARG
78
9
1_555
A
GLN
136
A
GLN
113
9
1_555
A
ILE
138
A
ILE
115
9
1_555
A
HIS
154
A
HIS
131
9
1_555
A
PHE
219
A
PHE
196
9
1_555
A
HOH
2009
K
HOH
9
1_555
C
LYS
4
C
LYS
5
9
1_555
A
TYR
98
A
TYR
75
11
1_555
A
ARG
101
A
ARG
78
11
1_555
A
GLN
136
A
GLN
113
11
1_555
A
ILE
138
A
ILE
115
11
1_555
A
HIS
154
A
HIS
131
11
1_555
A
VAL
216
A
VAL
193
11
1_555
A
VAL
217
A
VAL
194
11
1_555
A
PHE
219
A
PHE
196
11
1_555
A
HOH
2009
K
HOH
11
1_555
A
HOH
2011
K
HOH
11
1_555
C
LYS
4
C
LYS
5
11
1_555
179
P 65 2 2