0.011436 0.006603 0.000000 0.000000 0.013206 0.000000 0.000000 0.000000 0.003174 0.00000 0.00000 0.00000 Pannek, M. Gertz, M. Steegborn, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 120.00 87.440 87.440 315.060 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C7 H6 O2 122.121 BENZOIC ACID non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O S 78.133 DIMETHYL SULFOXIDE non-polymer C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C8 H18 N2 O4 S 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HEPES non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C8 H14 O4 174.194 (2R)-2-butylbutanedioic acid (2R)-2-butylsuccinic acid non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N O N 76 N O Y 77 N C Y 78 N C Y 79 N C Y 80 N C Y 81 N C Y 82 N C N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 R C N 91 N C N 92 N O N 93 N C N 94 N S N 95 N O N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N S N 104 N O N 105 N C N 106 N C N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N C N 114 N O N 115 N C N 116 N O N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 N C N 125 N C N 126 N N N 127 N C N 128 N C N 129 N C N 130 N C N 131 N O N 132 N C N 133 N C N 134 N S N 135 N O N 136 N O N 137 N O N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 S C N 158 N C N 159 N O N 160 N C N 161 N C N 162 N C N 163 N O N 164 N N N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N N N 177 S C N 178 N C N 179 N O N 180 N C N 181 N C N 182 N C N 183 N O N 184 N O N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 N C N 197 N C N 198 N O N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C Y 210 N C Y 211 N N Y 212 N C Y 213 N C Y 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N O N 227 N H N 228 N H N 229 N N N 230 S C N 231 N C N 232 N O N 233 S C N 234 N C N 235 N C N 236 N C N 237 N O N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N C N 281 N N N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N N N 299 S C N 300 N C N 301 N O N 302 N C N 303 N C N 304 N S N 305 N C N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N NA N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 N C N 347 N C N 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C N 364 N O N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N C N 374 R C N 375 N C N 376 N O N 377 N C N 378 N O N 379 N O N 380 N C N 381 N C N 382 N C N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 R C N 404 N O N 405 N C N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C Y 421 N C Y 422 N C Y 423 N C Y 424 N N Y 425 N C Y 426 N C Y 427 N C Y 428 N C Y 429 N C N 430 N O N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N N N 444 S C N 445 N C N 446 N O N 447 N C Y 448 N C Y 449 N C Y 450 N C Y 451 N C Y 452 N C Y 453 N C N 454 N O N 455 N O N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N N N 468 S C N 469 N C N 470 N O N 471 N C N 472 N C N 473 N C N 474 N O N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing Y 74 N doub Y 75 N sing Y 76 N sing N 77 N sing Y 78 N doub N 79 N sing Y 80 N sing N 81 N sing Y 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing Y 206 N sing Y 207 N doub Y 208 N doub N 209 N sing Y 210 N sing N 211 N sing Y 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing Y 314 N doub Y 315 N sing Y 316 N sing N 317 N sing Y 318 N doub N 319 N sing Y 320 N doub N 321 N sing Y 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N doub N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N doub N 404 N sing N 405 N sing N 406 N sing N 407 N sing Y 408 N doub Y 409 N sing Y 410 N sing N 411 N sing Y 412 N doub Y 413 N sing Y 414 N sing N 415 N sing Y 416 N sing Y 417 N doub N 418 N sing Y 419 N doub N 420 N sing Y 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N doub N 432 N sing N 433 N sing N 434 N sing N 435 N sing Y 436 N doub Y 437 N sing Y 438 N sing N 439 N sing Y 440 N doub N 441 N sing Y 442 N doub N 443 N sing Y 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N doub N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing GE Angew.Chem.Int.Ed.Engl. 9999 1433-7851 53 10728 10.1002/ANIE.201402679 25111069 Chemical Probing of the Human Sirtuin 5 Active Site Reveals its Substrate Acyl Specificity and Peptide-Based Inhibitors. 2014 10.2210/pdb4uub/pdb pdb_00004uub 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 MIRROR PIXEL 2013-07-05 DECTRIS PILATUS 6M SI-111 CRYSTAL SINGLE WAVELENGTH M x-ray 1 0.91705 1.0 14.1 BESSY 0.91705 SYNCHROTRON BESSY BEAMLINE 14.1 30423.785 NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL 3.5.1.- CATALYTIC CORE, UNP RESIDUES 30-298 2 man polymer BENZOYLATED GLYCINE AT POSITION 1 2R-BUTYL-SUCCINYL-LYSINE AT POSITION 4 969.112 CARBAMOYLPHOSPHATE SYNTHETASE I UNP RESIDUES 524-531 1 syn polymer 65.409 ZINC ION 2 syn non-polymer 62.068 1,2-ETHANEDIOL 2 syn non-polymer 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID 1 syn non-polymer 78.133 DIMETHYL SULFOXIDE 1 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 174.194 (2R)-2-butylbutanedioic acid 1 syn non-polymer 18.015 water 58 nat water SIRTUIN 5, REGULATORY PROTEIN SIR2 HOMOLOG 5 2R-BUTYL-SUCCINYL-CPS1 PEPTIDE no no GIDPFTTRPSSDLTAFREHFAKAKHIAIITGAGVSAESGVPTFRGPGGFWRKWQAQDLATPEAFSRDPSLVWEFYHYRRE VMRSKMPNPAHLAIAECEARLGQQGRSVVIITQNIDELHHRAGSKHVYEIHGSLFKTRCMSCGEVKANHKSPICPALDGK GAPDPNTKEARIPVELLPRCERKSCNGLLRPHVVWFGETLDSDILTAVERELEKCDLCLVVGTSSIVYPAAMFAPQVASR GVPVAEFNMECTPATQRFKYHFEGPCGSTLPPALE GIDPFTTRPSSDLTAFREHFAKAKHIAIITGAGVSAESGVPTFRGPGGFWRKWQAQDLATPEAFSRDPSLVWEFYHYRRE VMRSKMPNPAHLAIAECEARLGQQGRSVVIITQNIDELHHRAGSKHVYEIHGSLFKTRCMSCGEVKANHKSPICPALDGK GAPDPNTKEARIPVELLPRCERKSCNGLLRPHVVWFGETLDSDILTAVERELEKCDLCLVVGTSSIVYPAAMFAPQVASR GVPVAEFNMECTPATQRFKYHFEGPCGSTLPPALE A,B polypeptide(L) no yes (BEZ)GVLKEYGV XGVLKEYGV D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ZEBRAFISH sample 7955 DANIO RERIO 469008 ESCHERICHIA COLI BL21(DE3) CODONPLUS PET151 PLASMID 1 2.9 57 NONE 7.2 20% PEG3350, 0.1 M HEPES PH 7.2 database_2 pdbx_database_status pdbx_struct_conn_angle struct_conn struct_conn_type struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Database references Other Database references Derived calculations Other Data collection Refinement description 1 0 2014-08-20 1 1 2014-10-08 1 2 2022-12-07 1 3 2024-01-31 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_conn_type.id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH SUCCINYLATED CPS1-PEPTIDE CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH GLUTARYLATED CPS1-PEPTIDE CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH 3-PHENYL-SUCCINYLATED CPS1-PEPTIDE CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH 3-NITRO-PROPIONYLATED CPS1-PEPTIDE CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH ADIPOYLATED CPS1-PEPTIDE CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH 3-METHYL-SUCCINYLATED CPS1-PEPTIDE CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH 3,3-DIMETHYL-SUCCINYLATED CPS1-PEPTIDE CRYSTAL STRUCTURE OF ZEBRAFISH SIRTUIN 5 IN COMPLEX WITH 3S-Z-AMINO-SUCCINYLATED CPS1-PEPTIDE PDBE Y PDBE 2014-07-25 REL REL 1 A O HOH 2039 7.46 ZN ZINC ION EDO 1,2-ETHANEDIOL EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID DMS DIMETHYL SULFOXIDE NA SODIUM ION SU8 (2R)-2-butylbutanedioic acid HOH water 9606 HUMAN HOMO SAPIENS sample 2NYR PDB ENTRY 2NYR PDB experimental model ZN 1299 3 ZN ZN 1299 A EDO 1300 4 EDO EDO 1300 A ZN 1299 3 ZN ZN 1299 B EPE 1300 5 EPE EPE 1300 B DMS 1301 6 DMS DMS 1301 B NA 1302 7 NA NA 1302 B EDO 1303 4 EDO EDO 1303 B SU8 1004 8 SU8 SU8 1004 D HOH 2001 9 HOH HOH 2001 A HOH 2002 9 HOH HOH 2002 A HOH 2003 9 HOH HOH 2003 A HOH 2004 9 HOH HOH 2004 A HOH 2005 9 HOH HOH 2005 A HOH 2006 9 HOH HOH 2006 A HOH 2007 9 HOH HOH 2007 A HOH 2008 9 HOH HOH 2008 A HOH 2009 9 HOH HOH 2009 A HOH 2010 9 HOH HOH 2010 A HOH 2011 9 HOH HOH 2011 A HOH 2012 9 HOH HOH 2012 A HOH 2013 9 HOH HOH 2013 A HOH 2014 9 HOH HOH 2014 A HOH 2015 9 HOH HOH 2015 A HOH 2016 9 HOH HOH 2016 A HOH 2017 9 HOH HOH 2017 A HOH 2018 9 HOH HOH 2018 A HOH 2019 9 HOH HOH 2019 A HOH 2020 9 HOH HOH 2020 A HOH 2021 9 HOH HOH 2021 A HOH 2022 9 HOH HOH 2022 A HOH 2023 9 HOH HOH 2023 A HOH 2024 9 HOH HOH 2024 A HOH 2025 9 HOH HOH 2025 A HOH 2026 9 HOH HOH 2026 A HOH 2027 9 HOH HOH 2027 A HOH 2028 9 HOH HOH 2028 A HOH 2029 9 HOH HOH 2029 A HOH 2030 9 HOH HOH 2030 A HOH 2031 9 HOH HOH 2031 A HOH 2032 9 HOH HOH 2032 A HOH 2033 9 HOH HOH 2033 A HOH 2034 9 HOH HOH 2034 A HOH 2035 9 HOH HOH 2035 A HOH 2036 9 HOH HOH 2036 A HOH 2037 9 HOH HOH 2037 A HOH 2038 9 HOH HOH 2038 A HOH 2039 9 HOH HOH 2039 A HOH 2001 9 HOH HOH 2001 B HOH 2002 9 HOH HOH 2002 B HOH 2003 9 HOH HOH 2003 B HOH 2004 9 HOH HOH 2004 B HOH 2005 9 HOH HOH 2005 B HOH 2006 9 HOH HOH 2006 B HOH 2007 9 HOH HOH 2007 B HOH 2008 9 HOH HOH 2008 B HOH 2009 9 HOH HOH 2009 B HOH 2010 9 HOH HOH 2010 B HOH 2011 9 HOH HOH 2011 B HOH 2012 9 HOH HOH 2012 B HOH 2013 9 HOH HOH 2013 B HOH 2014 9 HOH HOH 2014 B HOH 2015 9 HOH HOH 2015 B HOH 2016 9 HOH HOH 2016 B HOH 2017 9 HOH HOH 2017 B HOH 2018 9 HOH HOH 2018 B HOH 2019 9 HOH HOH 2019 B n 1 24 A n 2 25 A n 3 26 A n 4 27 A n 5 28 A n 6 29 A n 7 30 A n 8 31 A n 9 32 A n 10 33 A n 11 34 A ASP 35 n 12 ASP 35 A LEU 36 n 13 LEU 36 A THR 37 n 14 THR 37 A ALA 38 n 15 ALA 38 A PHE 39 n 16 PHE 39 A ARG 40 n 17 ARG 40 A GLU 41 n 18 GLU 41 A HIS 42 n 19 HIS 42 A PHE 43 n 20 PHE 43 A ALA 44 n 21 ALA 44 A LYS 45 n 22 LYS 45 A ALA 46 n 23 ALA 46 A LYS 47 n 24 LYS 47 A HIS 48 n 25 HIS 48 A ILE 49 n 26 ILE 49 A ALA 50 n 27 ALA 50 A ILE 51 n 28 ILE 51 A ILE 52 n 29 ILE 52 A THR 53 n 30 THR 53 A GLY 54 n 31 GLY 54 A ALA 55 n 32 ALA 55 A GLY 56 n 33 GLY 56 A VAL 57 n 34 VAL 57 A SER 58 n 35 SER 58 A ALA 59 n 36 ALA 59 A GLU 60 n 37 GLU 60 A SER 61 n 38 SER 61 A GLY 62 n 39 GLY 62 A VAL 63 n 40 VAL 63 A PRO 64 n 41 PRO 64 A THR 65 n 42 THR 65 A PHE 66 n 43 PHE 66 A ARG 67 n 44 ARG 67 A GLY 68 n 45 GLY 68 A PRO 69 n 46 PRO 69 A GLY 70 n 47 GLY 70 A GLY 71 n 48 GLY 71 A PHE 72 n 49 PHE 72 A TRP 73 n 50 TRP 73 A ARG 74 n 51 ARG 74 A LYS 75 n 52 LYS 75 A TRP 76 n 53 TRP 76 A GLN 77 n 54 GLN 77 A ALA 78 n 55 ALA 78 A GLN 79 n 56 GLN 79 A ASP 80 n 57 ASP 80 A LEU 81 n 58 LEU 81 A ALA 82 n 59 ALA 82 A THR 83 n 60 THR 83 A PRO 84 n 61 PRO 84 A GLU 85 n 62 GLU 85 A ALA 86 n 63 ALA 86 A PHE 87 n 64 PHE 87 A SER 88 n 65 SER 88 A ARG 89 n 66 ARG 89 A ASP 90 n 67 ASP 90 A PRO 91 n 68 PRO 91 A SER 92 n 69 SER 92 A LEU 93 n 70 LEU 93 A VAL 94 n 71 VAL 94 A TRP 95 n 72 TRP 95 A GLU 96 n 73 GLU 96 A PHE 97 n 74 PHE 97 A TYR 98 n 75 TYR 98 A HIS 99 n 76 HIS 99 A TYR 100 n 77 TYR 100 A ARG 101 n 78 ARG 101 A ARG 102 n 79 ARG 102 A GLU 103 n 80 GLU 103 A VAL 104 n 81 VAL 104 A MET 105 n 82 MET 105 A ARG 106 n 83 ARG 106 A SER 107 n 84 SER 107 A LYS 108 n 85 LYS 108 A MET 109 n 86 MET 109 A PRO 110 n 87 PRO 110 A ASN 111 n 88 ASN 111 A PRO 112 n 89 PRO 112 A ALA 113 n 90 ALA 113 A HIS 114 n 91 HIS 114 A LEU 115 n 92 LEU 115 A ALA 116 n 93 ALA 116 A ILE 117 n 94 ILE 117 A ALA 118 n 95 ALA 118 A GLU 119 n 96 GLU 119 A CYS 120 n 97 CYS 120 A GLU 121 n 98 GLU 121 A ALA 122 n 99 ALA 122 A ARG 123 n 100 ARG 123 A LEU 124 n 101 LEU 124 A GLY 125 n 102 GLY 125 A GLN 126 n 103 GLN 126 A GLN 127 n 104 GLN 127 A GLY 128 n 105 GLY 128 A ARG 129 n 106 ARG 129 A SER 130 n 107 SER 130 A VAL 131 n 108 VAL 131 A VAL 132 n 109 VAL 132 A ILE 133 n 110 ILE 133 A ILE 134 n 111 ILE 134 A THR 135 n 112 THR 135 A GLN 136 n 113 GLN 136 A ASN 137 n 114 ASN 137 A ILE 138 n 115 ILE 138 A ASP 139 n 116 ASP 139 A GLU 140 n 117 GLU 140 A LEU 141 n 118 LEU 141 A HIS 142 n 119 HIS 142 A HIS 143 n 120 HIS 143 A ARG 144 n 121 ARG 144 A ALA 145 n 122 ALA 145 A GLY 146 n 123 GLY 146 A SER 147 n 124 SER 147 A LYS 148 n 125 LYS 148 A HIS 149 n 126 HIS 149 A VAL 150 n 127 VAL 150 A TYR 151 n 128 TYR 151 A GLU 152 n 129 GLU 152 A ILE 153 n 130 ILE 153 A HIS 154 n 131 HIS 154 A GLY 155 n 132 GLY 155 A SER 156 n 133 SER 156 A LEU 157 n 134 LEU 157 A PHE 158 n 135 PHE 158 A LYS 159 n 136 LYS 159 A THR 160 n 137 THR 160 A ARG 161 n 138 ARG 161 A CYS 162 n 139 CYS 162 A MET 163 n 140 MET 163 A SER 164 n 141 SER 164 A CYS 165 n 142 CYS 165 A GLY 166 n 143 GLY 166 A GLU 167 n 144 GLU 167 A VAL 168 n 145 VAL 168 A LYS 169 n 146 LYS 169 A ALA 170 n 147 ALA 170 A ASN 171 n 148 ASN 171 A HIS 172 n 149 HIS 172 A LYS 173 n 150 LYS 173 A SER 174 n 151 SER 174 A PRO 175 n 152 PRO 175 A ILE 176 n 153 ILE 176 A CYS 177 n 154 CYS 177 A PRO 178 n 155 PRO 178 A ALA 179 n 156 ALA 179 A LEU 180 n 157 LEU 180 A ASP 181 n 158 ASP 181 A GLY 182 n 159 GLY 182 A LYS 183 n 160 LYS 183 A GLY 184 n 161 GLY 184 A ALA 185 n 162 ALA 185 A PRO 186 n 163 PRO 186 A ASP 187 n 164 ASP 187 A PRO 188 n 165 PRO 188 A ASN 189 n 166 ASN 189 A THR 190 n 167 THR 190 A LYS 191 n 168 LYS 191 A GLU 192 n 169 GLU 192 A ALA 193 n 170 ALA 193 A ARG 194 n 171 ARG 194 A ILE 195 n 172 ILE 195 A PRO 196 n 173 PRO 196 A VAL 197 n 174 VAL 197 A GLU 198 n 175 GLU 198 A LEU 199 n 176 LEU 199 A LEU 200 n 177 LEU 200 A PRO 201 n 178 PRO 201 A ARG 202 n 179 ARG 202 A CYS 203 n 180 CYS 203 A GLU 204 n 181 GLU 204 A ARG 205 n 182 ARG 205 A LYS 206 n 183 LYS 206 A SER 207 n 184 SER 207 A CYS 208 n 185 CYS 208 A ASN 209 n 186 ASN 209 A GLY 210 n 187 GLY 210 A LEU 211 n 188 LEU 211 A LEU 212 n 189 LEU 212 A ARG 213 n 190 ARG 213 A PRO 214 n 191 PRO 214 A HIS 215 n 192 HIS 215 A VAL 216 n 193 VAL 216 A VAL 217 n 194 VAL 217 A TRP 218 n 195 TRP 218 A PHE 219 n 196 PHE 219 A GLY 220 n 197 GLY 220 A GLU 221 n 198 GLU 221 A THR 222 n 199 THR 222 A LEU 223 n 200 LEU 223 A ASP 224 n 201 ASP 224 A SER 225 n 202 SER 225 A ASP 226 n 203 ASP 226 A ILE 227 n 204 ILE 227 A LEU 228 n 205 LEU 228 A THR 229 n 206 THR 229 A ALA 230 n 207 ALA 230 A VAL 231 n 208 VAL 231 A GLU 232 n 209 GLU 232 A ARG 233 n 210 ARG 233 A GLU 234 n 211 GLU 234 A LEU 235 n 212 LEU 235 A GLU 236 n 213 GLU 236 A LYS 237 n 214 LYS 237 A CYS 238 n 215 CYS 238 A ASP 239 n 216 ASP 239 A LEU 240 n 217 LEU 240 A CYS 241 n 218 CYS 241 A LEU 242 n 219 LEU 242 A VAL 243 n 220 VAL 243 A VAL 244 n 221 VAL 244 A GLY 245 n 222 GLY 245 A THR 246 n 223 THR 246 A SER 247 n 224 SER 247 A SER 248 n 225 SER 248 A ILE 249 n 226 ILE 249 A VAL 250 n 227 VAL 250 A TYR 251 n 228 TYR 251 A PRO 252 n 229 PRO 252 A ALA 253 n 230 ALA 253 A ALA 254 n 231 ALA 254 A MET 255 n 232 MET 255 A PHE 256 n 233 PHE 256 A ALA 257 n 234 ALA 257 A PRO 258 n 235 PRO 258 A GLN 259 n 236 GLN 259 A VAL 260 n 237 VAL 260 A ALA 261 n 238 ALA 261 A SER 262 n 239 SER 262 A ARG 263 n 240 ARG 263 A GLY 264 n 241 GLY 264 A VAL 265 n 242 VAL 265 A PRO 266 n 243 PRO 266 A VAL 267 n 244 VAL 267 A ALA 268 n 245 ALA 268 A GLU 269 n 246 GLU 269 A PHE 270 n 247 PHE 270 A ASN 271 n 248 ASN 271 A MET 272 n 249 MET 272 A GLU 273 n 250 GLU 273 A CYS 274 n 251 CYS 274 A THR 275 n 252 THR 275 A PRO 276 n 253 PRO 276 A ALA 277 n 254 ALA 277 A THR 278 n 255 THR 278 A GLN 279 n 256 GLN 279 A n 257 280 A n 258 281 A LYS 282 n 259 LYS 282 A TYR 283 n 260 TYR 283 A HIS 284 n 261 HIS 284 A PHE 285 n 262 PHE 285 A GLU 286 n 263 GLU 286 A GLY 287 n 264 GLY 287 A PRO 288 n 265 PRO 288 A CYS 289 n 266 CYS 289 A GLY 290 n 267 GLY 290 A SER 291 n 268 SER 291 A THR 292 n 269 THR 292 A LEU 293 n 270 LEU 293 A PRO 294 n 271 PRO 294 A PRO 295 n 272 PRO 295 A ALA 296 n 273 ALA 296 A LEU 297 n 274 LEU 297 A GLU 298 n 275 GLU 298 A n 1 24 B n 2 25 B n 3 26 B n 4 27 B n 5 28 B n 6 29 B n 7 30 B n 8 31 B n 9 32 B SER 33 n 10 SER 33 B SER 34 n 11 SER 34 B ASP 35 n 12 ASP 35 B LEU 36 n 13 LEU 36 B THR 37 n 14 THR 37 B ALA 38 n 15 ALA 38 B PHE 39 n 16 PHE 39 B ARG 40 n 17 ARG 40 B GLU 41 n 18 GLU 41 B HIS 42 n 19 HIS 42 B PHE 43 n 20 PHE 43 B ALA 44 n 21 ALA 44 B LYS 45 n 22 LYS 45 B ALA 46 n 23 ALA 46 B LYS 47 n 24 LYS 47 B HIS 48 n 25 HIS 48 B ILE 49 n 26 ILE 49 B ALA 50 n 27 ALA 50 B ILE 51 n 28 ILE 51 B ILE 52 n 29 ILE 52 B THR 53 n 30 THR 53 B GLY 54 n 31 GLY 54 B ALA 55 n 32 ALA 55 B GLY 56 n 33 GLY 56 B VAL 57 n 34 VAL 57 B SER 58 n 35 SER 58 B ALA 59 n 36 ALA 59 B GLU 60 n 37 GLU 60 B SER 61 n 38 SER 61 B GLY 62 n 39 GLY 62 B VAL 63 n 40 VAL 63 B PRO 64 n 41 PRO 64 B THR 65 n 42 THR 65 B PHE 66 n 43 PHE 66 B ARG 67 n 44 ARG 67 B GLY 68 n 45 GLY 68 B PRO 69 n 46 PRO 69 B GLY 70 n 47 GLY 70 B GLY 71 n 48 GLY 71 B PHE 72 n 49 PHE 72 B TRP 73 n 50 TRP 73 B ARG 74 n 51 ARG 74 B LYS 75 n 52 LYS 75 B TRP 76 n 53 TRP 76 B GLN 77 n 54 GLN 77 B ALA 78 n 55 ALA 78 B GLN 79 n 56 GLN 79 B ASP 80 n 57 ASP 80 B LEU 81 n 58 LEU 81 B ALA 82 n 59 ALA 82 B THR 83 n 60 THR 83 B PRO 84 n 61 PRO 84 B GLU 85 n 62 GLU 85 B ALA 86 n 63 ALA 86 B PHE 87 n 64 PHE 87 B SER 88 n 65 SER 88 B ARG 89 n 66 ARG 89 B ASP 90 n 67 ASP 90 B PRO 91 n 68 PRO 91 B SER 92 n 69 SER 92 B LEU 93 n 70 LEU 93 B VAL 94 n 71 VAL 94 B TRP 95 n 72 TRP 95 B GLU 96 n 73 GLU 96 B PHE 97 n 74 PHE 97 B TYR 98 n 75 TYR 98 B HIS 99 n 76 HIS 99 B TYR 100 n 77 TYR 100 B ARG 101 n 78 ARG 101 B ARG 102 n 79 ARG 102 B GLU 103 n 80 GLU 103 B VAL 104 n 81 VAL 104 B MET 105 n 82 MET 105 B ARG 106 n 83 ARG 106 B SER 107 n 84 SER 107 B LYS 108 n 85 LYS 108 B MET 109 n 86 MET 109 B PRO 110 n 87 PRO 110 B ASN 111 n 88 ASN 111 B PRO 112 n 89 PRO 112 B ALA 113 n 90 ALA 113 B HIS 114 n 91 HIS 114 B LEU 115 n 92 LEU 115 B ALA 116 n 93 ALA 116 B ILE 117 n 94 ILE 117 B ALA 118 n 95 ALA 118 B GLU 119 n 96 GLU 119 B CYS 120 n 97 CYS 120 B GLU 121 n 98 GLU 121 B ALA 122 n 99 ALA 122 B ARG 123 n 100 ARG 123 B LEU 124 n 101 LEU 124 B GLY 125 n 102 GLY 125 B GLN 126 n 103 GLN 126 B GLN 127 n 104 GLN 127 B GLY 128 n 105 GLY 128 B ARG 129 n 106 ARG 129 B SER 130 n 107 SER 130 B VAL 131 n 108 VAL 131 B VAL 132 n 109 VAL 132 B ILE 133 n 110 ILE 133 B ILE 134 n 111 ILE 134 B THR 135 n 112 THR 135 B GLN 136 n 113 GLN 136 B ASN 137 n 114 ASN 137 B ILE 138 n 115 ILE 138 B ASP 139 n 116 ASP 139 B GLU 140 n 117 GLU 140 B LEU 141 n 118 LEU 141 B HIS 142 n 119 HIS 142 B HIS 143 n 120 HIS 143 B ARG 144 n 121 ARG 144 B ALA 145 n 122 ALA 145 B GLY 146 n 123 GLY 146 B SER 147 n 124 SER 147 B LYS 148 n 125 LYS 148 B HIS 149 n 126 HIS 149 B VAL 150 n 127 VAL 150 B TYR 151 n 128 TYR 151 B GLU 152 n 129 GLU 152 B ILE 153 n 130 ILE 153 B HIS 154 n 131 HIS 154 B GLY 155 n 132 GLY 155 B SER 156 n 133 SER 156 B LEU 157 n 134 LEU 157 B PHE 158 n 135 PHE 158 B LYS 159 n 136 LYS 159 B THR 160 n 137 THR 160 B ARG 161 n 138 ARG 161 B CYS 162 n 139 CYS 162 B MET 163 n 140 MET 163 B SER 164 n 141 SER 164 B CYS 165 n 142 CYS 165 B GLY 166 n 143 GLY 166 B GLU 167 n 144 GLU 167 B VAL 168 n 145 VAL 168 B LYS 169 n 146 LYS 169 B ALA 170 n 147 ALA 170 B ASN 171 n 148 ASN 171 B HIS 172 n 149 HIS 172 B LYS 173 n 150 LYS 173 B SER 174 n 151 SER 174 B PRO 175 n 152 PRO 175 B ILE 176 n 153 ILE 176 B CYS 177 n 154 CYS 177 B PRO 178 n 155 PRO 178 B ALA 179 n 156 ALA 179 B LEU 180 n 157 LEU 180 B ASP 181 n 158 ASP 181 B GLY 182 n 159 GLY 182 B LYS 183 n 160 LYS 183 B GLY 184 n 161 GLY 184 B ALA 185 n 162 ALA 185 B PRO 186 n 163 PRO 186 B ASP 187 n 164 ASP 187 B PRO 188 n 165 PRO 188 B ASN 189 n 166 ASN 189 B THR 190 n 167 THR 190 B LYS 191 n 168 LYS 191 B GLU 192 n 169 GLU 192 B ALA 193 n 170 ALA 193 B ARG 194 n 171 ARG 194 B ILE 195 n 172 ILE 195 B PRO 196 n 173 PRO 196 B VAL 197 n 174 VAL 197 B GLU 198 n 175 GLU 198 B LEU 199 n 176 LEU 199 B LEU 200 n 177 LEU 200 B PRO 201 n 178 PRO 201 B ARG 202 n 179 ARG 202 B CYS 203 n 180 CYS 203 B GLU 204 n 181 GLU 204 B ARG 205 n 182 ARG 205 B LYS 206 n 183 LYS 206 B SER 207 n 184 SER 207 B CYS 208 n 185 CYS 208 B ASN 209 n 186 ASN 209 B GLY 210 n 187 GLY 210 B LEU 211 n 188 LEU 211 B LEU 212 n 189 LEU 212 B ARG 213 n 190 ARG 213 B PRO 214 n 191 PRO 214 B HIS 215 n 192 HIS 215 B VAL 216 n 193 VAL 216 B VAL 217 n 194 VAL 217 B TRP 218 n 195 TRP 218 B PHE 219 n 196 PHE 219 B GLY 220 n 197 GLY 220 B GLU 221 n 198 GLU 221 B THR 222 n 199 THR 222 B LEU 223 n 200 LEU 223 B ASP 224 n 201 ASP 224 B SER 225 n 202 SER 225 B ASP 226 n 203 ASP 226 B ILE 227 n 204 ILE 227 B LEU 228 n 205 LEU 228 B THR 229 n 206 THR 229 B ALA 230 n 207 ALA 230 B VAL 231 n 208 VAL 231 B GLU 232 n 209 GLU 232 B ARG 233 n 210 ARG 233 B GLU 234 n 211 GLU 234 B LEU 235 n 212 LEU 235 B GLU 236 n 213 GLU 236 B LYS 237 n 214 LYS 237 B CYS 238 n 215 CYS 238 B ASP 239 n 216 ASP 239 B LEU 240 n 217 LEU 240 B CYS 241 n 218 CYS 241 B LEU 242 n 219 LEU 242 B VAL 243 n 220 VAL 243 B VAL 244 n 221 VAL 244 B GLY 245 n 222 GLY 245 B THR 246 n 223 THR 246 B SER 247 n 224 SER 247 B SER 248 n 225 SER 248 B ILE 249 n 226 ILE 249 B VAL 250 n 227 VAL 250 B TYR 251 n 228 TYR 251 B PRO 252 n 229 PRO 252 B ALA 253 n 230 ALA 253 B ALA 254 n 231 ALA 254 B MET 255 n 232 MET 255 B PHE 256 n 233 PHE 256 B ALA 257 n 234 ALA 257 B PRO 258 n 235 PRO 258 B GLN 259 n 236 GLN 259 B VAL 260 n 237 VAL 260 B ALA 261 n 238 ALA 261 B SER 262 n 239 SER 262 B ARG 263 n 240 ARG 263 B GLY 264 n 241 GLY 264 B VAL 265 n 242 VAL 265 B PRO 266 n 243 PRO 266 B VAL 267 n 244 VAL 267 B ALA 268 n 245 ALA 268 B GLU 269 n 246 GLU 269 B PHE 270 n 247 PHE 270 B ASN 271 n 248 ASN 271 B MET 272 n 249 MET 272 B GLU 273 n 250 GLU 273 B CYS 274 n 251 CYS 274 B THR 275 n 252 THR 275 B PRO 276 n 253 PRO 276 B ALA 277 n 254 ALA 277 B n 255 278 B n 256 279 B n 257 280 B PHE 281 n 258 PHE 281 B LYS 282 n 259 LYS 282 B TYR 283 n 260 TYR 283 B HIS 284 n 261 HIS 284 B PHE 285 n 262 PHE 285 B GLU 286 n 263 GLU 286 B GLY 287 n 264 GLY 287 B PRO 288 n 265 PRO 288 B CYS 289 n 266 CYS 289 B GLY 290 n 267 GLY 290 B SER 291 n 268 SER 291 B THR 292 n 269 THR 292 B LEU 293 n 270 LEU 293 B PRO 294 n 271 PRO 294 B PRO 295 n 272 PRO 295 B ALA 296 n 273 ALA 296 B LEU 297 n 274 LEU 297 B GLU 298 n 275 GLU 298 B BEZ 0 n 1 BEZ 0 D GLY 1 n 2 GLY 1 D VAL 2 n 3 VAL 2 D LEU 3 n 4 LEU 3 D LYS 4 n 5 LYS 4 D GLU 5 n 6 GLU 5 D TYR 6 n 7 TYR 6 D GLY 7 n 8 GLY 7 D VAL 8 n 9 VAL 8 D 2.9691 0.8339 0.4431 1.4709 0.3950 1.5724 -0.0490 0.2399 0.2166 -0.0505 -0.0076 0.0013 -0.1417 -0.1797 0.0566 0.0998 0.0436 0.0064 0.1656 -0.0434 0.0589 refined -22.5777 -26.2364 -6.3147 X-RAY DIFFRACTION 3.2033 0.1825 -0.9423 1.3876 0.9942 3.9752 -0.0394 -0.2487 0.0831 0.0896 0.2360 -0.1933 0.0135 0.4949 -0.1966 0.1182 0.0326 0.0302 0.1756 -0.0570 0.0529 refined 3.2266 -29.7573 -27.0679 X-RAY DIFFRACTION A 35 A 298 X-RAY DIFFRACTION 1 B 33 B 298 X-RAY DIFFRACTION 2 software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 1 monomeric 1410 -8.6 15830 A CYS 162 A SG CYS 139 1_555 A ZN 1299 D ZN ZN 1_555 A CYS 165 A SG CYS 142 1_555 106.1 A CYS 162 A SG CYS 139 1_555 A ZN 1299 D ZN ZN 1_555 A CYS 203 A SG CYS 180 1_555 103.2 A CYS 165 A SG CYS 142 1_555 A ZN 1299 D ZN ZN 1_555 A CYS 203 A SG CYS 180 1_555 116.1 A CYS 162 A SG CYS 139 1_555 A ZN 1299 D ZN ZN 1_555 A CYS 208 A SG CYS 185 1_555 93.3 A CYS 165 A SG CYS 142 1_555 A ZN 1299 D ZN ZN 1_555 A CYS 208 A SG CYS 185 1_555 121.1 A CYS 203 A SG CYS 180 1_555 A ZN 1299 D ZN ZN 1_555 A CYS 208 A SG CYS 185 1_555 112.2 B CYS 162 B SG CYS 139 1_555 B ZN 1299 F ZN ZN 1_555 B CYS 165 B SG CYS 142 1_555 111.9 B CYS 162 B SG CYS 139 1_555 B ZN 1299 F ZN ZN 1_555 B CYS 203 B SG CYS 180 1_555 100.9 B CYS 165 B SG CYS 142 1_555 B ZN 1299 F ZN ZN 1_555 B CYS 203 B SG CYS 180 1_555 116.3 B CYS 162 B SG CYS 139 1_555 B ZN 1299 F ZN ZN 1_555 B CYS 208 B SG CYS 185 1_555 91.8 B CYS 165 B SG CYS 142 1_555 B ZN 1299 F ZN ZN 1_555 B CYS 208 B SG CYS 185 1_555 122.9 B CYS 203 B SG CYS 180 1_555 B ZN 1299 F ZN ZN 1_555 B CYS 208 B SG CYS 185 1_555 108.1 B ASP 224 B OD2 ASP 201 1_555 B NA 1302 I NA NA 1_555 B ASP 224 B OD2 ASP 201 12_544 167.7 B ASP 224 B OD2 ASP 201 1_555 B NA 1302 I NA NA 1_555 B ASP 226 B OD2 ASP 203 1_555 105.3 B ASP 224 B OD2 ASP 201 12_544 B NA 1302 I NA NA 1_555 B ASP 226 B OD2 ASP 203 1_555 80.9 B ASP 224 B OD2 ASP 201 1_555 B NA 1302 I NA NA 1_555 B ASP 226 B OD2 ASP 203 12_544 80.9 B ASP 224 B OD2 ASP 201 12_544 B NA 1302 I NA NA 1_555 B ASP 226 B OD2 ASP 203 12_544 105.3 B ASP 226 B OD2 ASP 203 1_555 B NA 1302 I NA NA 1_555 B ASP 226 B OD2 ASP 203 12_544 121.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 151 A N TYR 128 A O ILE 133 A O ILE 110 A N VAL 132 A N VAL 109 A O ILE 49 A O ILE 26 A N ALA 50 A N ALA 27 A O LEU 240 A O LEU 217 A N VAL 243 A N VAL 220 A O ALA 268 A O ALA 245 A N GLU 269 A N GLU 246 A O TYR 283 A O TYR 260 A N LYS 169 A N LYS 146 A O THR 160 A O THR 137 A N ARG 161 A N ARG 138 A O ARG 213 A O ARG 190 B N TYR 151 B N TYR 128 B O ILE 133 B O ILE 110 B N VAL 132 B N VAL 109 B O ILE 49 B O ILE 26 B N ALA 50 B N ALA 27 B O LEU 240 B O LEU 217 B N VAL 243 B N VAL 220 B O ALA 268 B O ALA 245 B N GLU 269 B N GLU 246 B O TYR 283 B O TYR 260 B N LYS 169 B N LYS 146 B O THR 160 B O THR 137 B N ARG 161 B N ARG 138 B O ARG 213 B O ARG 190 1 B NA 1302 I NA 1 A GLY 24 A GLY 1 1 Y 1 A ILE 25 A ILE 2 1 Y 1 A ASP 26 A ASP 3 1 Y 1 A PRO 27 A PRO 4 1 Y 1 A PHE 28 A PHE 5 1 Y 1 A THR 29 A THR 6 1 Y 1 A THR 30 A THR 7 1 Y 1 A ARG 31 A ARG 8 1 Y 1 A PRO 32 A PRO 9 1 Y 1 A SER 33 A SER 10 1 Y 1 A SER 34 A SER 11 1 Y 1 A ARG 280 A ARG 257 1 Y 1 A PHE 281 A PHE 258 1 Y 1 B GLY 24 B GLY 1 1 Y 1 B ILE 25 B ILE 2 1 Y 1 B ASP 26 B ASP 3 1 Y 1 B PRO 27 B PRO 4 1 Y 1 B PHE 28 B PHE 5 1 Y 1 B THR 29 B THR 6 1 Y 1 B THR 30 B THR 7 1 Y 1 B ARG 31 B ARG 8 1 Y 1 B PRO 32 B PRO 9 1 Y 1 B THR 278 B THR 255 1 Y 1 B GLN 279 B GLN 256 1 Y 1 B ARG 280 B ARG 257 1 Y 1 A A THR GLN 278 279 149.80 1 A ARG 74 50.01 -132.38 1 A GLU 140 58.37 14.15 1 A LEU 240 -170.96 131.39 1 A THR 246 174.05 175.91 1 A PHE 256 -121.83 -58.86 1 B ARG 74 50.11 -131.99 1 B GLU 140 57.33 16.36 1 B LEU 240 -170.19 130.44 1 B THR 246 173.02 176.49 1 B CYS 274 71.29 46.36 1 B PRO 276 -52.71 88.61 1 D GLU 5 58.01 12.14 52.573 0.05 0.02 0.00 0.05 0.00 -0.15 0.932 0.889 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED. N-TERMINAL RESIDUES OF PROTEIN CHAINS ARE DISORDERED. RESIDUES A280 TO A281 ARE DISORDERED. RESIDUES B278 TO B280 ARE DISORDERED 0.25387 0.20279 0.20549 2.90 48.44 876 15861 5.2 99.90 34.932 0.327 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.388 0.80 0.80 1.20 PDB ENTRY 2NYR MAXIMUM LIKELIHOOD MASK 2.90 48.44 58 4236 41 0 4137 0.011 0.019 4307 0.005 0.020 4077 1.558 1.962 5828 1.112 3.004 9403 6.347 5.000 532 34.939 22.796 186 17.929 15.000 687 18.135 15.000 34 0.078 0.200 626 0.007 0.021 4800 0.004 0.020 985 1.666 2.925 2131 1.667 2.923 2130 2.878 4.375 2656 1.914 3.153 2175 0.317 0.340 2.975 64 1124 20 99.66 2.90 50.00 4UUB 16737 2.0 0.17 1 13.30 8.1 99.9 1.01 2.90 3.00 1.90 1 6.4 99.9 refinement REFMAC 5.8.0073 data reduction XDS data scaling XSCALE phasing MOLREP Crystal structure of zebrafish Sirtuin 5 in complex with 2R-butyl- succinylated CPS1-peptide 1 N N 1 N N 2 N N 3 N N 4 N N 3 N N 5 N N 6 N N 7 N N 4 N N 8 N N 9 N N 9 N N A ASP 35 A ASP 12 HELX_P A ALA 46 A ALA 23 1 1 12 A GLY 54 A GLY 31 HELX_P A GLU 60 A GLU 37 1 2 7 A GLN 77 A GLN 54 HELX_P A ALA 82 A ALA 59 1 3 6 A THR 83 A THR 60 HELX_P A ASP 90 A ASP 67 1 4 8 A ASP 90 A ASP 67 HELX_P A MET 105 A MET 82 1 5 16 A ASN 111 A ASN 88 HELX_P A GLN 127 A GLN 104 1 6 17 A GLU 140 A GLU 117 HELX_P A GLY 146 A GLY 123 1 7 7 A CYS 177 A CYS 154 HELX_P A ASP 181 A ASP 158 5 8 5 A PRO 196 A PRO 173 HELX_P A LEU 200 A LEU 177 5 9 5 A ASP 224 A ASP 201 HELX_P A CYS 238 A CYS 215 1 10 15 A PRO 252 A PRO 229 HELX_P A MET 255 A MET 232 5 11 4 A PHE 256 A PHE 233 HELX_P A ARG 263 A ARG 240 1 12 8 A PRO 288 A PRO 265 HELX_P A GLU 298 A GLU 275 1 13 11 B ASP 35 B ASP 12 HELX_P B ALA 46 B ALA 23 1 14 12 B GLY 54 B GLY 31 HELX_P B GLU 60 B GLU 37 1 15 7 B GLN 77 B GLN 54 HELX_P B ALA 82 B ALA 59 1 16 6 B THR 83 B THR 60 HELX_P B ASP 90 B ASP 67 1 17 8 B ASP 90 B ASP 67 HELX_P B MET 105 B MET 82 1 18 16 B ASN 111 B ASN 88 HELX_P B GLN 127 B GLN 104 1 19 17 B GLU 140 B GLU 117 HELX_P B GLY 146 B GLY 123 1 20 7 B CYS 177 B CYS 154 HELX_P B ASP 181 B ASP 158 5 21 5 B PRO 196 B PRO 173 HELX_P B LEU 200 B LEU 177 5 22 5 B ASP 224 B ASP 201 HELX_P B CYS 238 B CYS 215 1 23 15 B PRO 252 B PRO 229 HELX_P B MET 255 B MET 232 5 24 4 B PHE 256 B PHE 233 HELX_P B ARG 263 B ARG 240 1 25 8 B PRO 288 B PRO 265 HELX_P B GLU 298 B GLU 275 1 26 11 D LYS 4 C LYS 5 HELX_P D VAL 8 C VAL 9 5 27 5 disulf 2.025 A CYS 274 A SG CYS 251 1_555 B CYS 274 B SG CYS 251 12_554 covale 1.357 both D BEZ 0 C C BEZ 1 1_555 D GLY 1 C N GLY 2 1_555 covale 1.310 one D LYS 4 C NZ LYS 5 1_555 D SU8 1004 K CAJ SU8 1_555 metalc 2.341 A CYS 162 A SG CYS 139 1_555 A ZN 1299 D ZN ZN 1_555 metalc 2.360 A CYS 165 A SG CYS 142 1_555 A ZN 1299 D ZN ZN 1_555 metalc 2.283 A CYS 203 A SG CYS 180 1_555 A ZN 1299 D ZN ZN 1_555 metalc 2.324 A CYS 208 A SG CYS 185 1_555 A ZN 1299 D ZN ZN 1_555 metalc 2.353 B CYS 162 B SG CYS 139 1_555 B ZN 1299 F ZN ZN 1_555 metalc 2.308 B CYS 165 B SG CYS 142 1_555 B ZN 1299 F ZN ZN 1_555 metalc 2.349 B CYS 203 B SG CYS 180 1_555 B ZN 1299 F ZN ZN 1_555 metalc 2.329 B CYS 208 B SG CYS 185 1_555 B ZN 1299 F ZN ZN 1_555 metalc 2.709 B ASP 224 B OD2 ASP 201 1_555 B NA 1302 I NA NA 1_555 metalc 2.711 B ASP 224 B OD2 ASP 201 12_544 B NA 1302 I NA NA 1_555 metalc 2.755 B ASP 226 B OD2 ASP 203 1_555 B NA 1302 I NA NA 1_555 metalc 2.754 B ASP 226 B OD2 ASP 203 12_544 B NA 1302 I NA NA 1_555 HYDROLASE HYDROLASE, SIRTUIN 5, REGULATORY ENZYME, DEACYLASE, MITOCHONDRIAL, ROSSMANN-FOLD, ZINC-BINDING A SER 174 A SER 151 1 A PRO 175 A PRO 152 -5.68 A TYR 251 A TYR 228 1 A PRO 252 A PRO 229 4.70 B SER 174 B SER 151 1 B PRO 175 B PRO 152 -4.30 B TYR 251 B TYR 228 1 B PRO 252 B PRO 229 8.75 given -0.751430 -0.547450 0.368310 -0.530400 0.169150 -0.830700 0.392470 -0.819570 -0.417470 -25.73701 -42.49344 -42.36008 SIR5_DANRE UNP 1 Q6DHI5 Q5R209_HUMAN UNP 2 Q5R209 30 298 4UUB 30 298 Q6DHI5 A 1 7 275 30 298 4UUB 30 298 Q6DHI5 B 1 7 275 524 531 4UUB 1 8 Q5R209 D 2 2 9 1 expression tag GLY 24 4UUB A Q6DHI5 UNP 1 1 expression tag ILE 25 4UUB A Q6DHI5 UNP 2 1 expression tag ASP 26 4UUB A Q6DHI5 UNP 3 1 expression tag PRO 27 4UUB A Q6DHI5 UNP 4 1 expression tag PHE 28 4UUB A Q6DHI5 UNP 5 1 expression tag THR 29 4UUB A Q6DHI5 UNP 6 2 expression tag GLY 24 4UUB B Q6DHI5 UNP 1 2 expression tag ILE 25 4UUB B Q6DHI5 UNP 2 2 expression tag ASP 26 4UUB B Q6DHI5 UNP 3 2 expression tag PRO 27 4UUB B Q6DHI5 UNP 4 2 expression tag PHE 28 4UUB B Q6DHI5 UNP 5 2 expression tag THR 29 4UUB B Q6DHI5 UNP 6 3 modified residue BEZ 0 4UUB D Q5R209 UNP 1 6 3 6 3 parallel parallel parallel parallel parallel anti-parallel anti-parallel parallel parallel parallel parallel parallel anti-parallel anti-parallel A VAL 150 A VAL 127 A GLU 152 A GLU 129 A SER 130 A SER 107 A THR 135 A THR 112 A HIS 48 A HIS 25 A THR 53 A THR 30 A LEU 240 A LEU 217 A VAL 244 A VAL 221 A VAL 267 A VAL 244 A ASN 271 A ASN 248 A TYR 283 A TYR 260 A GLU 286 A GLU 263 A VAL 168 A VAL 145 A ALA 170 A ALA 147 A GLY 155 A GLY 132 A CYS 162 A CYS 139 A LEU 212 A LEU 189 A VAL 216 A VAL 193 B VAL 150 B VAL 127 B GLU 152 B GLU 129 B SER 130 B SER 107 B THR 135 B THR 112 B HIS 48 B HIS 25 B THR 53 B THR 30 B LEU 240 B LEU 217 B VAL 244 B VAL 221 B VAL 267 B VAL 244 B ASN 271 B ASN 248 B TYR 283 B TYR 260 B GLU 286 B GLU 263 B VAL 168 B VAL 145 B ALA 170 B ALA 147 B GLY 155 B GLY 132 B CYS 162 B CYS 139 B LEU 212 B LEU 189 B VAL 216 B VAL 193 BINDING SITE FOR RESIDUE ZN A 1299 A ZN 1299 Software 4 BINDING SITE FOR RESIDUE ZN B 1299 B ZN 1299 Software 4 BINDING SITE FOR RESIDUE EPE B 1300 B EPE 1300 Software 9 BINDING SITE FOR RESIDUE DMS B 1301 B DMS 1301 Software 4 BINDING SITE FOR RESIDUE SU8 D 1004 D SU8 1004 Software 7 BINDING SITE FOR RESIDUE NA B 1302 B NA 1302 Software 4 BINDING SITE FOR RESIDUE EDO B 1303 B EDO 1303 Software 4 BINDING SITE FOR RESIDUE EDO A 1300 A EDO 1300 Software 3 A CYS 162 A CYS 139 4 1_555 A CYS 165 A CYS 142 4 1_555 A CYS 203 A CYS 180 4 1_555 A CYS 208 A CYS 185 4 1_555 B CYS 162 B CYS 139 4 1_555 B CYS 165 B CYS 142 4 1_555 B CYS 203 B CYS 180 4 1_555 B CYS 208 B CYS 185 4 1_555 A GLU 232 A GLU 209 9 6_554 B ALA 78 B ALA 55 9 1_555 B ALA 82 B ALA 59 9 1_555 B ARG 101 B ARG 78 9 1_555 B HIS 154 B HIS 131 9 1_555 B VAL 217 B VAL 194 9 1_555 B PHE 219 B PHE 196 9 1_555 B GLU 221 B GLU 198 9 1_555 B EDO 1303 J EDO 9 1_555 A ARG 144 A ARG 121 4 1_555 A ALA 145 A ALA 122 4 1_555 B ARG 144 B ARG 121 4 1_555 B ALA 145 B ALA 122 4 1_555 A TYR 98 A TYR 75 7 1_555 A ARG 101 A ARG 78 7 1_555 A GLN 136 A GLN 113 7 1_555 A HIS 154 A HIS 131 7 1_555 A VAL 217 A VAL 194 7 1_555 A PHE 219 A PHE 196 7 1_555 D LYS 4 C LYS 5 7 1_555 B ASP 224 B ASP 201 4 1_555 B ASP 224 B ASP 201 4 12_544 B ASP 226 B ASP 203 4 1_555 B ASP 226 B ASP 203 4 12_544 B GLN 136 B GLN 113 4 1_555 B ASN 137 B ASN 114 4 1_555 B ILE 138 B ILE 115 4 1_555 B EPE 1300 G EPE 4 1_555 A LYS 173 A LYS 150 3 1_555 A ILE 176 A ILE 153 3 1_555 A ARG 202 A ARG 179 3 1_555 179 P 65 2 2