0.013820
0.000000
0.010878
0.000000
0.011075
0.000000
0.000000
0.000000
0.025609
0.000000
0.000000
0.000000
Dawes, S.S.
Kendall, S.K.
Baker, E.N.
Lott, J.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
128.210
90.000
72.356
90.292
49.693
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
To Be Published
0353
Crystal structure of Rv3557c/KstR2, a transcriptional repressor involved in cholesterol metabolism in Mycobacterium tuberculosis.
10.2210/pdb4w1u/pdb
pdb_00004w1u
203
1
IMAGE PLATE
2009-11-11
MAR scanner 345 mm plate
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU MICROMAX-007 HF
23250.281
HTH-type transcriptional repressor KstR2
1
man
polymer
18.015
water
158
nat
water
no
no
GAMGMDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDI
VDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDL
VYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAIVLGGITKEGV
GAMGMDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDI
VDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDL
VYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAIVLGGITKEGV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 25618 / H37Rv
sample
1
204
kstR2, Rv3557c
83332
Mycobacterium tuberculosis
511693
Escherichia coli
BL21
DE3
plasmid
Biological sequence
pET30a
1
2.78
55.77
VAPOR DIFFUSION, SITTING DROP
4.9
0.2 M citric acid, 14% MPEG 5000
291
entity_src_gen
pdbx_struct_oper_list
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Derived calculations
Refinement description
Source and taxonomy
Data collection
Database references
Refinement description
1
0
2015-07-29
1
1
2017-11-22
1
2
2023-09-27
_entity_src_gen.pdbx_alt_source_flag
_pdbx_struct_oper_list.symmetry_operation
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
RCSB
Y
RCSB
2014-08-13
REL
REL
HOH
water
2IBD
PDB entry 2IBD
PDB
experimental model
HOH
114
2
HOH
HOH
301
A
HOH
18
2
HOH
HOH
302
A
HOH
126
2
HOH
HOH
303
A
HOH
35
2
HOH
HOH
304
A
HOH
5
2
HOH
HOH
305
A
HOH
44
2
HOH
HOH
306
A
HOH
22
2
HOH
HOH
307
A
HOH
94
2
HOH
HOH
308
A
HOH
2
2
HOH
HOH
309
A
HOH
51
2
HOH
HOH
310
A
HOH
77
2
HOH
HOH
311
A
HOH
33
2
HOH
HOH
312
A
HOH
38
2
HOH
HOH
313
A
HOH
93
2
HOH
HOH
314
A
HOH
46
2
HOH
HOH
315
A
HOH
8
2
HOH
HOH
316
A
HOH
34
2
HOH
HOH
317
A
HOH
83
2
HOH
HOH
318
A
HOH
24
2
HOH
HOH
319
A
HOH
47
2
HOH
HOH
320
A
HOH
143
2
HOH
HOH
321
A
HOH
36
2
HOH
HOH
322
A
HOH
109
2
HOH
HOH
323
A
HOH
4
2
HOH
HOH
324
A
HOH
154
2
HOH
HOH
325
A
HOH
23
2
HOH
HOH
326
A
HOH
29
2
HOH
HOH
327
A
HOH
28
2
HOH
HOH
328
A
HOH
9
2
HOH
HOH
329
A
HOH
95
2
HOH
HOH
330
A
HOH
49
2
HOH
HOH
331
A
HOH
98
2
HOH
HOH
332
A
HOH
41
2
HOH
HOH
333
A
HOH
14
2
HOH
HOH
334
A
HOH
7
2
HOH
HOH
335
A
HOH
152
2
HOH
HOH
336
A
HOH
153
2
HOH
HOH
337
A
HOH
25
2
HOH
HOH
338
A
HOH
123
2
HOH
HOH
339
A
HOH
146
2
HOH
HOH
340
A
HOH
145
2
HOH
HOH
341
A
HOH
147
2
HOH
HOH
342
A
HOH
110
2
HOH
HOH
343
A
HOH
133
2
HOH
HOH
344
A
HOH
142
2
HOH
HOH
345
A
HOH
1
2
HOH
HOH
346
A
HOH
3
2
HOH
HOH
347
A
HOH
6
2
HOH
HOH
348
A
HOH
10
2
HOH
HOH
349
A
HOH
11
2
HOH
HOH
350
A
HOH
12
2
HOH
HOH
351
A
HOH
13
2
HOH
HOH
352
A
HOH
15
2
HOH
HOH
353
A
HOH
16
2
HOH
HOH
354
A
HOH
17
2
HOH
HOH
355
A
HOH
19
2
HOH
HOH
356
A
HOH
20
2
HOH
HOH
357
A
HOH
21
2
HOH
HOH
358
A
HOH
26
2
HOH
HOH
359
A
HOH
27
2
HOH
HOH
360
A
HOH
30
2
HOH
HOH
361
A
HOH
31
2
HOH
HOH
362
A
HOH
32
2
HOH
HOH
363
A
HOH
37
2
HOH
HOH
364
A
HOH
39
2
HOH
HOH
365
A
HOH
40
2
HOH
HOH
366
A
HOH
42
2
HOH
HOH
367
A
HOH
43
2
HOH
HOH
368
A
HOH
45
2
HOH
HOH
369
A
HOH
48
2
HOH
HOH
370
A
HOH
50
2
HOH
HOH
371
A
HOH
52
2
HOH
HOH
372
A
HOH
53
2
HOH
HOH
373
A
HOH
54
2
HOH
HOH
374
A
HOH
55
2
HOH
HOH
375
A
HOH
56
2
HOH
HOH
376
A
HOH
57
2
HOH
HOH
377
A
HOH
58
2
HOH
HOH
378
A
HOH
59
2
HOH
HOH
379
A
HOH
60
2
HOH
HOH
380
A
HOH
61
2
HOH
HOH
381
A
HOH
62
2
HOH
HOH
382
A
HOH
63
2
HOH
HOH
383
A
HOH
64
2
HOH
HOH
384
A
HOH
65
2
HOH
HOH
385
A
HOH
66
2
HOH
HOH
386
A
HOH
67
2
HOH
HOH
387
A
HOH
68
2
HOH
HOH
388
A
HOH
69
2
HOH
HOH
389
A
HOH
70
2
HOH
HOH
390
A
HOH
71
2
HOH
HOH
391
A
HOH
72
2
HOH
HOH
392
A
HOH
73
2
HOH
HOH
393
A
HOH
74
2
HOH
HOH
394
A
HOH
75
2
HOH
HOH
395
A
HOH
76
2
HOH
HOH
396
A
HOH
78
2
HOH
HOH
397
A
HOH
79
2
HOH
HOH
398
A
HOH
80
2
HOH
HOH
399
A
HOH
81
2
HOH
HOH
400
A
HOH
82
2
HOH
HOH
401
A
HOH
84
2
HOH
HOH
402
A
HOH
85
2
HOH
HOH
403
A
HOH
86
2
HOH
HOH
404
A
HOH
87
2
HOH
HOH
405
A
HOH
88
2
HOH
HOH
406
A
HOH
89
2
HOH
HOH
407
A
HOH
90
2
HOH
HOH
408
A
HOH
91
2
HOH
HOH
409
A
HOH
92
2
HOH
HOH
410
A
HOH
96
2
HOH
HOH
411
A
HOH
97
2
HOH
HOH
412
A
HOH
99
2
HOH
HOH
413
A
HOH
100
2
HOH
HOH
414
A
HOH
101
2
HOH
HOH
415
A
HOH
102
2
HOH
HOH
416
A
HOH
103
2
HOH
HOH
417
A
HOH
104
2
HOH
HOH
418
A
HOH
105
2
HOH
HOH
419
A
HOH
106
2
HOH
HOH
420
A
HOH
107
2
HOH
HOH
421
A
HOH
108
2
HOH
HOH
422
A
HOH
111
2
HOH
HOH
423
A
HOH
112
2
HOH
HOH
424
A
HOH
113
2
HOH
HOH
425
A
HOH
115
2
HOH
HOH
426
A
HOH
116
2
HOH
HOH
427
A
HOH
117
2
HOH
HOH
428
A
HOH
118
2
HOH
HOH
429
A
HOH
119
2
HOH
HOH
430
A
HOH
120
2
HOH
HOH
431
A
HOH
121
2
HOH
HOH
432
A
HOH
122
2
HOH
HOH
433
A
HOH
124
2
HOH
HOH
434
A
HOH
125
2
HOH
HOH
435
A
HOH
127
2
HOH
HOH
436
A
HOH
128
2
HOH
HOH
437
A
HOH
129
2
HOH
HOH
438
A
HOH
130
2
HOH
HOH
439
A
HOH
131
2
HOH
HOH
440
A
HOH
132
2
HOH
HOH
441
A
HOH
134
2
HOH
HOH
442
A
HOH
135
2
HOH
HOH
443
A
HOH
136
2
HOH
HOH
444
A
HOH
137
2
HOH
HOH
445
A
HOH
138
2
HOH
HOH
446
A
HOH
139
2
HOH
HOH
447
A
HOH
140
2
HOH
HOH
448
A
HOH
141
2
HOH
HOH
449
A
HOH
144
2
HOH
HOH
450
A
HOH
148
2
HOH
HOH
451
A
HOH
149
2
HOH
HOH
452
A
HOH
150
2
HOH
HOH
453
A
HOH
151
2
HOH
HOH
454
A
HOH
155
2
HOH
HOH
455
A
HOH
156
2
HOH
HOH
456
A
HOH
157
2
HOH
HOH
457
A
HOH
158
2
HOH
HOH
458
A
1.900
1.900
26.600
26.600
Phaser MODE: MR_AUTO
n
1
-3
A
n
2
-2
A
n
3
-1
A
n
4
0
A
n
5
1
A
n
6
2
A
ARG
3
n
7
ARG
3
A
VAL
4
n
8
VAL
4
A
ALA
5
n
9
ALA
5
A
n
10
6
A
n
11
7
A
n
12
8
A
n
13
9
A
n
14
10
A
ARG
11
n
15
ARG
11
A
ARG
12
n
16
ARG
12
A
GLY
13
n
17
GLY
13
A
GLU
14
n
18
GLU
14
A
LEU
15
n
19
LEU
15
A
LEU
16
n
20
LEU
16
A
GLU
17
n
21
GLU
17
A
LEU
18
n
22
LEU
18
A
ALA
19
n
23
ALA
19
A
ALA
20
n
24
ALA
20
A
ALA
21
n
25
ALA
21
A
MET
22
n
26
MET
22
A
PHE
23
n
27
PHE
23
A
ALA
24
n
28
ALA
24
A
GLU
25
n
29
GLU
25
A
ARG
26
n
30
ARG
26
A
GLY
27
n
31
GLY
27
A
LEU
28
n
32
LEU
28
A
ARG
29
n
33
ARG
29
A
ALA
30
n
34
ALA
30
A
THR
31
n
35
THR
31
A
THR
32
n
36
THR
32
A
VAL
33
n
37
VAL
33
A
ARG
34
n
38
ARG
34
A
ASP
35
n
39
ASP
35
A
ILE
36
n
40
ILE
36
A
ALA
37
n
41
ALA
37
A
ASP
38
n
42
ASP
38
A
GLY
39
n
43
GLY
39
A
ALA
40
n
44
ALA
40
A
GLY
41
n
45
GLY
41
A
ILE
42
n
46
ILE
42
A
LEU
43
n
47
LEU
43
A
SER
44
n
48
SER
44
A
GLY
45
n
49
GLY
45
A
SER
46
n
50
SER
46
A
LEU
47
n
51
LEU
47
A
TYR
48
n
52
TYR
48
A
HIS
49
n
53
HIS
49
A
HIS
50
n
54
HIS
50
A
PHE
51
n
55
PHE
51
A
ALA
52
n
56
ALA
52
A
SER
53
n
57
SER
53
A
LYS
54
n
58
LYS
54
A
GLU
55
n
59
GLU
55
A
GLU
56
n
60
GLU
56
A
MET
57
n
61
MET
57
A
VAL
58
n
62
VAL
58
A
ASP
59
n
63
ASP
59
A
GLU
60
n
64
GLU
60
A
LEU
61
n
65
LEU
61
A
LEU
62
n
66
LEU
62
A
ARG
63
n
67
ARG
63
A
GLY
64
n
68
GLY
64
A
PHE
65
n
69
PHE
65
A
LEU
66
n
70
LEU
66
A
ASP
67
n
71
ASP
67
A
TRP
68
n
72
TRP
68
A
LEU
69
n
73
LEU
69
A
PHE
70
n
74
PHE
70
A
ALA
71
n
75
ALA
71
A
ARG
72
n
76
ARG
72
A
TYR
73
n
77
TYR
73
A
ARG
74
n
78
ARG
74
A
ASP
75
n
79
ASP
75
A
ILE
76
n
80
ILE
76
A
VAL
77
n
81
VAL
77
A
ASP
78
n
82
ASP
78
A
SER
79
n
83
SER
79
A
THR
80
n
84
THR
80
A
ALA
81
n
85
ALA
81
A
ASN
82
n
86
ASN
82
A
PRO
83
n
87
PRO
83
A
LEU
84
n
88
LEU
84
A
GLU
85
n
89
GLU
85
A
ARG
86
n
90
ARG
86
A
LEU
87
n
91
LEU
87
A
GLN
88
n
92
GLN
88
A
GLY
89
n
93
GLY
89
A
LEU
90
n
94
LEU
90
A
PHE
91
n
95
PHE
91
A
MET
92
n
96
MET
92
A
ALA
93
n
97
ALA
93
A
SER
94
n
98
SER
94
A
PHE
95
n
99
PHE
95
A
GLU
96
n
100
GLU
96
A
ALA
97
n
101
ALA
97
A
ILE
98
n
102
ILE
98
A
GLU
99
n
103
GLU
99
A
HIS
100
n
104
HIS
100
A
HIS
101
n
105
HIS
101
A
HIS
102
n
106
HIS
102
A
ALA
103
n
107
ALA
103
A
GLN
104
n
108
GLN
104
A
VAL
105
n
109
VAL
105
A
VAL
106
n
110
VAL
106
A
ILE
107
n
111
ILE
107
A
TYR
108
n
112
TYR
108
A
GLN
109
n
113
GLN
109
A
ASP
110
n
114
ASP
110
A
GLU
111
n
115
GLU
111
A
ALA
112
n
116
ALA
112
A
GLN
113
n
117
GLN
113
A
ARG
114
n
118
ARG
114
A
LEU
115
n
119
LEU
115
A
ALA
116
n
120
ALA
116
A
SER
117
n
121
SER
117
A
GLN
118
n
122
GLN
118
A
PRO
119
n
123
PRO
119
A
ARG
120
n
124
ARG
120
A
PHE
121
n
125
PHE
121
A
SER
122
n
126
SER
122
A
TYR
123
n
127
TYR
123
A
ILE
124
n
128
ILE
124
A
GLU
125
n
129
GLU
125
A
ASP
126
n
130
ASP
126
A
ARG
127
n
131
ARG
127
A
ASN
128
n
132
ASN
128
A
LYS
129
n
133
LYS
129
A
GLN
130
n
134
GLN
130
A
GLN
131
n
135
GLN
131
A
ARG
132
n
136
ARG
132
A
LYS
133
n
137
LYS
133
A
MET
134
n
138
MET
134
A
TRP
135
n
139
TRP
135
A
VAL
136
n
140
VAL
136
A
ASP
137
n
141
ASP
137
A
VAL
138
n
142
VAL
138
A
LEU
139
n
143
LEU
139
A
ASN
140
n
144
ASN
140
A
GLN
141
n
145
GLN
141
A
GLY
142
n
146
GLY
142
A
ILE
143
n
147
ILE
143
A
GLU
144
n
148
GLU
144
A
GLU
145
n
149
GLU
145
A
GLY
146
n
150
GLY
146
A
TYR
147
n
151
TYR
147
A
PHE
148
n
152
PHE
148
A
ARG
149
n
153
ARG
149
A
PRO
150
n
154
PRO
150
A
ASP
151
n
155
ASP
151
A
LEU
152
n
156
LEU
152
A
ASP
153
n
157
ASP
153
A
VAL
154
n
158
VAL
154
A
ASP
155
n
159
ASP
155
A
LEU
156
n
160
LEU
156
A
VAL
157
n
161
VAL
157
A
TYR
158
n
162
TYR
158
A
ARG
159
n
163
ARG
159
A
PHE
160
n
164
PHE
160
A
ILE
161
n
165
ILE
161
A
ARG
162
n
166
ARG
162
A
ASP
163
n
167
ASP
163
A
THR
164
n
168
THR
164
A
THR
165
n
169
THR
165
A
TRP
166
n
170
TRP
166
A
VAL
167
n
171
VAL
167
A
SER
168
n
172
SER
168
A
VAL
169
n
173
VAL
169
A
ARG
170
n
174
ARG
170
A
TRP
171
n
175
TRP
171
A
TYR
172
n
176
TYR
172
A
ARG
173
n
177
ARG
173
A
PRO
174
n
178
PRO
174
A
GLY
175
n
179
GLY
175
A
GLY
176
n
180
GLY
176
A
PRO
177
n
181
PRO
177
A
LEU
178
n
182
LEU
178
A
THR
179
n
183
THR
179
A
ALA
180
n
184
ALA
180
A
GLN
181
n
185
GLN
181
A
GLN
182
n
186
GLN
182
A
VAL
183
n
187
VAL
183
A
GLY
184
n
188
GLY
184
A
GLN
185
n
189
GLN
185
A
GLN
186
n
190
GLN
186
A
TYR
187
n
191
TYR
187
A
LEU
188
n
192
LEU
188
A
ALA
189
n
193
ALA
189
A
ILE
190
n
194
ILE
190
A
VAL
191
n
195
VAL
191
A
LEU
192
n
196
LEU
192
A
GLY
193
n
197
GLY
193
A
GLY
194
n
198
GLY
194
A
ILE
195
n
199
ILE
195
A
THR
196
n
200
THR
196
A
LYS
197
n
201
LYS
197
A
GLU
198
n
202
GLU
198
A
GLY
199
n
203
GLY
199
A
VAL
200
n
204
VAL
200
A
5.4723
-2.7086
7.4768
7.1839
-3.8864
2.0166
-0.1138
-0.4591
0.1902
0.4309
-0.0432
0.3491
-0.3270
-0.3366
0.1343
0.4036
0.0342
0.1227
0.3468
-0.0639
0.3241
refined
49.4007
-2.3122
54.7595
X-RAY DIFFRACTION
1.0272
0.9312
0.0880
7.0604
1.3983
0.8528
0.1058
-0.1655
0.0987
0.4156
-0.0438
-0.2472
-0.0108
0.0265
-0.0640
0.1234
-0.0196
-0.0218
0.2123
-0.0062
0.1251
refined
55.6861
-16.9326
46.8057
X-RAY DIFFRACTION
4.4184
-0.3830
-0.9116
6.3155
1.8251
7.1186
0.2057
-0.2549
0.2117
0.1867
-0.1635
0.2028
-0.1974
0.0714
-0.0829
0.0524
-0.0080
-0.0294
0.1654
-0.0031
0.1175
refined
43.3747
-28.2856
42.9899
X-RAY DIFFRACTION
A
0
A
0
X-RAY DIFFRACTION
1
chain 'A' and (resid 3 through 34 )
A
0
A
0
X-RAY DIFFRACTION
2
chain 'A' and (resid 35 through 150 )
A
0
A
0
X-RAY DIFFRACTION
3
chain 'A' and (resid 151 through 200 )
author_and_software_defined_assembly
PISA
2
dimeric
3330
-23
17930
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_757
-x+2,y,-z+2
crystal symmetry operation
83.2372325799
0.0000000000
78.0924450036
1
A
CG
ARG
3
A
CG
ARG
7
1
Y
1
A
CD
ARG
3
A
CD
ARG
7
1
Y
1
A
NE
ARG
3
A
NE
ARG
7
1
Y
1
A
CZ
ARG
3
A
CZ
ARG
7
1
Y
1
A
NH1
ARG
3
A
NH1
ARG
7
1
Y
1
A
NH2
ARG
3
A
NH2
ARG
7
1
Y
1
A
NE
ARG
12
A
NE
ARG
16
1
Y
1
A
CZ
ARG
12
A
CZ
ARG
16
1
Y
1
A
NH1
ARG
12
A
NH1
ARG
16
1
Y
1
A
NH2
ARG
12
A
NH2
ARG
16
1
Y
1
A
CG
ARG
34
A
CG
ARG
38
1
Y
1
A
CD
ARG
34
A
CD
ARG
38
1
Y
1
A
NE
ARG
34
A
NE
ARG
38
1
Y
1
A
CZ
ARG
34
A
CZ
ARG
38
1
Y
1
A
NH1
ARG
34
A
NH1
ARG
38
1
Y
1
A
NH2
ARG
34
A
NH2
ARG
38
1
Y
1
A
CG
ARG
173
A
CG
ARG
177
1
Y
1
A
CD
ARG
173
A
CD
ARG
177
1
Y
1
A
NE
ARG
173
A
NE
ARG
177
1
Y
1
A
CZ
ARG
173
A
CZ
ARG
177
1
Y
1
A
NH1
ARG
173
A
NH1
ARG
177
1
Y
1
A
NH2
ARG
173
A
NH2
ARG
177
1
Y
1
A
CG
GLU
198
A
CG
GLU
202
1
Y
1
A
CD
GLU
198
A
CD
GLU
202
1
Y
1
A
OE1
GLU
198
A
OE1
GLU
202
1
Y
1
A
OE2
GLU
198
A
OE2
GLU
202
1
Y
1
A
GLY
-3
A
GLY
1
1
Y
1
A
ALA
-2
A
ALA
2
1
Y
1
A
MET
-1
A
MET
3
1
Y
1
A
GLY
0
A
GLY
4
1
Y
1
A
MET
1
A
MET
5
1
Y
1
A
ASP
2
A
ASP
6
1
Y
1
A
GLY
6
A
GLY
10
1
Y
1
A
GLN
7
A
GLN
11
1
Y
1
A
VAL
8
A
VAL
12
1
Y
1
A
ASN
9
A
ASN
13
1
Y
1
A
SER
10
A
SER
14
1
Y
1
A
A
O
O
HOH
HOH
306
340
2.18
76.650
31.5700
11.400
0.2002
0.1716
0.1731
1.8750
26.6000
1008
18803
19811
5.0900
96.2900
0.8552
0.2000
1
FREE R-VALUE
1.380
MOLECULAR REPLACEMENT
21.9300
0.9000
1.1100
PDB entry 2IBD
ML
FLAT BULK SOLVENT MODEL
1.8750
26.6000
158
1699
41.04
0
0
1541
193
0.007
1632
0.926
2222
0.039
238
0.005
294
14.895
608
0.2775
0.2283
1.9735
130
2575
2705
7
93.0000
0.2418
0.1841
2.0971
141
2624
2765
7
95.0000
0.1921
0.1685
2.2590
144
2685
2829
7
96.0000
0.2297
0.1722
2.4862
138
2697
2835
7
96.0000
0.2090
0.1813
2.8455
153
2685
2838
7
97.0000
0.1908
0.1679
3.5837
139
2768
2907
7
98.0000
0.1788
0.1601
26.6030
163
2769
2932
7
98.0000
24.670
1.86
48.113
4W1U
19815
19815
0.020
0.050
0.046
1
13.013
25.100
124168
6.300
94.300
0.392
1.860
1.960
4.4
14882
2441
0.171
0.392
1
4.500
6.100
0
80.000
0.244
1.960
2.080
3.100
17250
2751
0.105
0.244
1
7.400
6.300
0
94.800
0.151
2.080
2.230
5.100
16348
2607
0.065
0.151
1
11.500
6.300
0
95.600
0.100
2.230
2.400
7.500
15293
2433
0.043
0.100
1
16.900
6.300
0
96.200
0.069
2.400
2.630
10.800
14246
2261
0.030
0.069
1
22.200
6.300
0
96.800
0.047
2.630
2.940
15.000
12868
2041
0.020
0.047
1
30.000
6.300
0
97.500
0.033
2.940
3.400
20.900
11637
1842
0.014
0.033
1
40.200
6.300
0
98.200
0.026
3.400
4.160
24.000
9847
1559
0.011
0.026
1
57.000
6.300
0
98.700
0.023
4.160
5.890
24.100
7659
1215
0.010
0.023
1
65.000
6.300
0
99.400
0.025
5.890
26.600
21.900
4138
665
0.011
0.025
1
62.000
6.200
0
96.800
data reduction
iMOSFLM
data scaling
SCALA
3.3.16
model building
ARP
model building
WARP
data extraction
PDB_EXTRACT
3.14
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.8.4_1496)
Crystal structure of Rv3557c/KstR2, a transcriptional repressor involved in cholesterol metabolism in Mycobacterium tuberculosis
1
N
N
2
N
N
A
ARG
12
A
ARG
16
HELX_P
A
GLY
27
A
GLY
31
1
AA1
16
A
THR
32
A
THR
36
HELX_P
A
ALA
40
A
ALA
44
1
AA2
9
A
LEU
43
A
LEU
47
HELX_P
A
TYR
48
A
TYR
52
1
AA3
6
A
SER
53
A
SER
57
HELX_P
A
THR
80
A
THR
84
1
AA4
28
A
ASN
82
A
ASN
86
HELX_P
A
HIS
101
A
HIS
105
1
AA5
20
A
HIS
101
A
HIS
105
HELX_P
A
ALA
116
A
ALA
120
1
AA6
16
A
SER
117
A
SER
121
HELX_P
A
PHE
121
A
PHE
125
5
AA7
5
A
SER
122
A
SER
126
HELX_P
A
GLU
145
A
GLU
149
1
AA8
24
A
ASP
153
A
ASP
157
HELX_P
A
VAL
167
A
VAL
171
1
AA9
15
A
SER
168
A
SER
172
HELX_P
A
TRP
171
A
TRP
175
5
AB1
4
A
THR
179
A
THR
183
HELX_P
A
GLY
194
A
GLY
198
1
AB2
16
TRANSCRIPTION
TetR-family repressor, cholesterol, TRANSCRIPTION
KSTR2_MYCTU
UNP
1
1
P9WMB9
MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDIVDST
ANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRF
IRDTTWVSVRWYRPGGPLTAQQVGQQYLAIVLGGITKEGV
1
200
4W1U
1
200
P9WMB9
A
1
5
204
1
expression tag
GLY
-3
4W1U
A
P9WMB9
UNP
1
1
expression tag
ALA
-2
4W1U
A
P9WMB9
UNP
2
1
expression tag
MET
-1
4W1U
A
P9WMB9
UNP
3
1
expression tag
GLY
0
4W1U
A
P9WMB9
UNP
4
5
C 1 2 1