0.016573
0.009568
0.000000
0.000000
0.019137
0.000000
0.000000
0.000000
0.010312
0.000000
0.000000
0.000000
Merski, M.
Shoichet, B.K.
Eidam, O.
Fischer, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
60.340
60.340
96.970
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C8 H18 N2 O4 S
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C7 H8
92.138
TOLUENE
non-polymer
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
N
C
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
S
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
N
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
Y
175
N
C
Y
176
N
N
Y
177
N
C
Y
178
N
C
Y
179
N
N
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
S
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
N
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
S
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
O
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
R
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
N
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
doub
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
Y
255
N
doub
Y
256
N
sing
Y
257
N
sing
N
258
N
sing
Y
259
N
doub
N
260
N
sing
Y
261
N
sing
N
262
N
sing
Y
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
1091-6490
112
5039
5044
10.1073/pnas.1500806112
25847998
Homologous ligands accommodated by discrete conformations of a buried cavity.
2015
10.2210/pdb4w53/pdb
pdb_00004w53
100
1
CCD
2009-07-23
ADSC QUANTUM 315r
two flat Si(111) crystals, mounted in a model DCM from Khozu
SINGLE WAVELENGTH
M
x-ray
1
1.116
1.0
8.3.1
ALS
1.116
SYNCHROTRON
ALS BEAMLINE 8.3.1
19691.541
Endolysin
3.2.1.17
L99A
1
man
polymer
92.138
TOLUENE
1
syn
non-polymer
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
1
syn
non-polymer
18.015
water
142
nat
water
Lysis protein,Lysozyme,Muramidase
no
no
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNLLEHHHHHH
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNLLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
172
10665
Enterobacteria phage T4
469008
Escherichia coli
BL21(DE3)
plasmid
Biological sequence
pET29
1
2.59
52.47
VAPOR DIFFUSION, HANGING DROP
7.5
20% (w/v) PEGF-4000, 10% 2-propanol, 0.1 M HEPES, 50 mM 2-mercaptoethanol, 50 mM 2-hydroxyethyl disulfide
277
citation
entity_src_gen
pdbx_audit_support
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_assembly_prop
pdbx_struct_oper_list
software
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
refine_hist
repository
Initial release
Database references
Database references
Author supporting evidence
Database references
Derived calculations
Other
Source and taxonomy
Refinement description
Author supporting evidence
Data collection
Database references
Refinement description
1
0
2015-04-01
1
1
2015-04-22
1
2
2015-05-06
1
3
2017-09-06
1
4
2017-11-22
1
5
2019-12-25
1
6
2023-09-27
_citation.journal_id_CSD
_entity_src_gen.pdbx_alt_source_flag
_pdbx_audit_support.funding_organization
_pdbx_database_status.pdb_format_compatible
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_oper_list.symmetry_operation
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_refine_hist.number_atoms_total
_refine_hist.pdbx_number_atoms_nucleic_acid
_refine_hist.pdbx_number_atoms_protein
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM59957
N
RCSB
Y
RCSB
2014-08-16
REL
REL
MBN
TOLUENE
EPE
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HOH
water
181L
PDB
experimental model
DRG
200
2
MBN
MBN
200
A
EPE
201
3
EPE
EPE
201
A
HOH
99
4
HOH
HOH
301
A
HOH
60
4
HOH
HOH
302
A
HOH
2
4
HOH
HOH
303
A
HOH
44
4
HOH
HOH
304
A
HOH
94
4
HOH
HOH
305
A
HOH
1
4
HOH
HOH
306
A
HOH
39
4
HOH
HOH
307
A
HOH
37
4
HOH
HOH
308
A
HOH
58
4
HOH
HOH
309
A
HOH
22
4
HOH
HOH
310
A
HOH
48
4
HOH
HOH
311
A
HOH
41
4
HOH
HOH
312
A
HOH
66
4
HOH
HOH
313
A
HOH
38
4
HOH
HOH
314
A
HOH
15
4
HOH
HOH
315
A
HOH
29
4
HOH
HOH
316
A
HOH
73
4
HOH
HOH
317
A
HOH
67
4
HOH
HOH
318
A
HOH
91
4
HOH
HOH
319
A
HOH
69
4
HOH
HOH
320
A
HOH
40
4
HOH
HOH
321
A
HOH
77
4
HOH
HOH
322
A
HOH
106
4
HOH
HOH
323
A
HOH
4
4
HOH
HOH
324
A
HOH
18
4
HOH
HOH
325
A
HOH
56
4
HOH
HOH
326
A
HOH
97
4
HOH
HOH
327
A
HOH
68
4
HOH
HOH
328
A
HOH
17
4
HOH
HOH
329
A
HOH
130
4
HOH
HOH
330
A
HOH
89
4
HOH
HOH
331
A
HOH
6
4
HOH
HOH
332
A
HOH
23
4
HOH
HOH
333
A
HOH
83
4
HOH
HOH
334
A
HOH
136
4
HOH
HOH
335
A
HOH
100
4
HOH
HOH
336
A
HOH
28
4
HOH
HOH
337
A
HOH
88
4
HOH
HOH
338
A
HOH
35
4
HOH
HOH
339
A
HOH
126
4
HOH
HOH
340
A
HOH
5
4
HOH
HOH
341
A
HOH
36
4
HOH
HOH
342
A
HOH
111
4
HOH
HOH
343
A
HOH
31
4
HOH
HOH
344
A
HOH
129
4
HOH
HOH
345
A
HOH
26
4
HOH
HOH
346
A
HOH
45
4
HOH
HOH
347
A
HOH
46
4
HOH
HOH
348
A
HOH
7
4
HOH
HOH
349
A
HOH
90
4
HOH
HOH
350
A
HOH
47
4
HOH
HOH
351
A
HOH
135
4
HOH
HOH
352
A
HOH
131
4
HOH
HOH
353
A
HOH
3
4
HOH
HOH
354
A
HOH
105
4
HOH
HOH
355
A
HOH
13
4
HOH
HOH
356
A
HOH
139
4
HOH
HOH
357
A
HOH
137
4
HOH
HOH
358
A
HOH
14
4
HOH
HOH
359
A
HOH
70
4
HOH
HOH
360
A
HOH
95
4
HOH
HOH
361
A
HOH
27
4
HOH
HOH
362
A
HOH
81
4
HOH
HOH
363
A
HOH
138
4
HOH
HOH
364
A
HOH
142
4
HOH
HOH
365
A
HOH
96
4
HOH
HOH
366
A
HOH
8
4
HOH
HOH
367
A
HOH
9
4
HOH
HOH
368
A
HOH
10
4
HOH
HOH
369
A
HOH
11
4
HOH
HOH
370
A
HOH
12
4
HOH
HOH
371
A
HOH
16
4
HOH
HOH
372
A
HOH
19
4
HOH
HOH
373
A
HOH
20
4
HOH
HOH
374
A
HOH
21
4
HOH
HOH
375
A
HOH
24
4
HOH
HOH
376
A
HOH
25
4
HOH
HOH
377
A
HOH
30
4
HOH
HOH
378
A
HOH
32
4
HOH
HOH
379
A
HOH
33
4
HOH
HOH
380
A
HOH
34
4
HOH
HOH
381
A
HOH
42
4
HOH
HOH
382
A
HOH
43
4
HOH
HOH
383
A
HOH
49
4
HOH
HOH
384
A
HOH
50
4
HOH
HOH
385
A
HOH
51
4
HOH
HOH
386
A
HOH
52
4
HOH
HOH
387
A
HOH
53
4
HOH
HOH
388
A
HOH
54
4
HOH
HOH
389
A
HOH
55
4
HOH
HOH
390
A
HOH
57
4
HOH
HOH
391
A
HOH
59
4
HOH
HOH
392
A
HOH
61
4
HOH
HOH
393
A
HOH
62
4
HOH
HOH
394
A
HOH
63
4
HOH
HOH
395
A
HOH
64
4
HOH
HOH
396
A
HOH
65
4
HOH
HOH
397
A
HOH
71
4
HOH
HOH
398
A
HOH
72
4
HOH
HOH
399
A
HOH
74
4
HOH
HOH
400
A
HOH
75
4
HOH
HOH
401
A
HOH
76
4
HOH
HOH
402
A
HOH
78
4
HOH
HOH
403
A
HOH
79
4
HOH
HOH
404
A
HOH
80
4
HOH
HOH
405
A
HOH
82
4
HOH
HOH
406
A
HOH
84
4
HOH
HOH
407
A
HOH
85
4
HOH
HOH
408
A
HOH
86
4
HOH
HOH
409
A
HOH
87
4
HOH
HOH
410
A
HOH
92
4
HOH
HOH
411
A
HOH
93
4
HOH
HOH
412
A
HOH
98
4
HOH
HOH
413
A
HOH
101
4
HOH
HOH
414
A
HOH
102
4
HOH
HOH
415
A
HOH
103
4
HOH
HOH
416
A
HOH
104
4
HOH
HOH
417
A
HOH
107
4
HOH
HOH
418
A
HOH
108
4
HOH
HOH
419
A
HOH
109
4
HOH
HOH
420
A
HOH
110
4
HOH
HOH
421
A
HOH
112
4
HOH
HOH
422
A
HOH
113
4
HOH
HOH
423
A
HOH
114
4
HOH
HOH
424
A
HOH
115
4
HOH
HOH
425
A
HOH
116
4
HOH
HOH
426
A
HOH
117
4
HOH
HOH
427
A
HOH
118
4
HOH
HOH
428
A
HOH
119
4
HOH
HOH
429
A
HOH
120
4
HOH
HOH
430
A
HOH
121
4
HOH
HOH
431
A
HOH
122
4
HOH
HOH
432
A
HOH
123
4
HOH
HOH
433
A
HOH
124
4
HOH
HOH
434
A
HOH
125
4
HOH
HOH
435
A
HOH
127
4
HOH
HOH
436
A
HOH
128
4
HOH
HOH
437
A
HOH
132
4
HOH
HOH
438
A
HOH
133
4
HOH
HOH
439
A
HOH
134
4
HOH
HOH
440
A
HOH
140
4
HOH
HOH
441
A
HOH
141
4
HOH
HOH
442
A
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
GLU
5
n
5
GLU
5
A
MET
6
n
6
MET
6
A
LEU
7
n
7
LEU
7
A
ARG
8
n
8
ARG
8
A
ILE
9
n
9
ILE
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
LYS
16
n
16
LYS
16
A
ILE
17
n
17
ILE
17
A
TYR
18
n
18
TYR
18
A
LYS
19
n
19
LYS
19
A
ASP
20
n
20
ASP
20
A
THR
21
n
21
THR
21
A
GLU
22
n
22
GLU
22
A
GLY
23
n
23
GLY
23
A
TYR
24
n
24
TYR
24
A
TYR
25
n
25
TYR
25
A
THR
26
n
26
THR
26
A
ILE
27
n
27
ILE
27
A
GLY
28
n
28
GLY
28
A
ILE
29
n
29
ILE
29
A
GLY
30
n
30
GLY
30
A
HIS
31
n
31
HIS
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
THR
34
n
34
THR
34
A
LYS
35
n
35
LYS
35
A
SER
36
n
36
SER
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
ASN
40
n
40
ASN
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
LYS
43
n
43
LYS
43
A
SER
44
n
44
SER
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
ASP
47
n
47
ASP
47
A
LYS
48
n
48
LYS
48
A
ALA
49
n
49
ALA
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
ARG
52
n
52
ARG
52
A
ASN
53
n
53
ASN
53
A
CYS
54
n
54
CYS
54
A
ASN
55
n
55
ASN
55
A
GLY
56
n
56
GLY
56
A
VAL
57
n
57
VAL
57
A
ILE
58
n
58
ILE
58
A
THR
59
n
59
THR
59
A
LYS
60
n
60
LYS
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
LEU
66
n
66
LEU
66
A
PHE
67
n
67
PHE
67
A
ASN
68
n
68
ASN
68
A
GLN
69
n
69
GLN
69
A
ASP
70
n
70
ASP
70
A
VAL
71
n
71
VAL
71
A
ASP
72
n
72
ASP
72
A
ALA
73
n
73
ALA
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
ARG
76
n
76
ARG
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
LEU
79
n
79
LEU
79
A
ARG
80
n
80
ARG
80
A
ASN
81
n
81
ASN
81
A
ALA
82
n
82
ALA
82
A
LYS
83
n
83
LYS
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
PRO
86
n
86
PRO
86
A
VAL
87
n
87
VAL
87
A
TYR
88
n
88
TYR
88
A
ASP
89
n
89
ASP
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
VAL
94
n
94
VAL
94
A
ARG
95
n
95
ARG
95
A
ARG
96
n
96
ARG
96
A
CYS
97
n
97
CYS
97
A
ALA
98
n
98
ALA
98
A
ALA
99
n
99
ALA
99
A
ILE
100
n
100
ILE
100
A
ASN
101
n
101
ASN
101
A
MET
102
n
102
MET
102
A
VAL
103
n
103
VAL
103
A
PHE
104
n
104
PHE
104
A
GLN
105
n
105
GLN
105
A
MET
106
n
106
MET
106
A
GLY
107
n
107
GLY
107
A
GLU
108
n
108
GLU
108
A
THR
109
n
109
THR
109
A
GLY
110
n
110
GLY
110
A
VAL
111
n
111
VAL
111
A
ALA
112
n
112
ALA
112
A
GLY
113
n
113
GLY
113
A
PHE
114
n
114
PHE
114
A
THR
115
n
115
THR
115
A
ASN
116
n
116
ASN
116
A
SER
117
n
117
SER
117
A
LEU
118
n
118
LEU
118
A
ARG
119
n
119
ARG
119
A
MET
120
n
120
MET
120
A
LEU
121
n
121
LEU
121
A
GLN
122
n
122
GLN
122
A
GLN
123
n
123
GLN
123
A
LYS
124
n
124
LYS
124
A
ARG
125
n
125
ARG
125
A
TRP
126
n
126
TRP
126
A
ASP
127
n
127
ASP
127
A
GLU
128
n
128
GLU
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
ASN
132
n
132
ASN
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
LYS
135
n
135
LYS
135
A
SER
136
n
136
SER
136
A
ARG
137
n
137
ARG
137
A
TRP
138
n
138
TRP
138
A
TYR
139
n
139
TYR
139
A
ASN
140
n
140
ASN
140
A
GLN
141
n
141
GLN
141
A
THR
142
n
142
THR
142
A
PRO
143
n
143
PRO
143
A
ASN
144
n
144
ASN
144
A
ARG
145
n
145
ARG
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
ARG
148
n
148
ARG
148
A
VAL
149
n
149
VAL
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
THR
152
n
152
THR
152
A
PHE
153
n
153
PHE
153
A
ARG
154
n
154
ARG
154
A
THR
155
n
155
THR
155
A
GLY
156
n
156
GLY
156
A
THR
157
n
157
THR
157
A
TRP
158
n
158
TRP
158
A
ASP
159
n
159
ASP
159
A
ALA
160
n
160
ALA
160
A
TYR
161
n
161
TYR
161
A
LYS
162
n
162
LYS
162
A
ASN
163
n
163
ASN
163
A
LEU
164
n
164
LEU
164
A
n
165
165
A
n
166
166
A
n
167
167
A
n
168
168
A
n
169
169
A
n
170
170
A
n
171
171
A
n
172
172
A
author_and_software_defined_assembly
PISA
1
monomeric
760
10
8500
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
18
A
N
TYR
18
A
O
THR
26
A
O
THR
26
A
N
TYR
25
A
N
TYR
25
A
O
LEU
33
A
O
LEU
33
1
A
CE
LYS
16
A
CE
LYS
16
1
Y
1
A
NZ
LYS
16
A
NZ
LYS
16
1
Y
1
A
NZ
LYS
60
A
NZ
LYS
60
1
Y
1
A
CG
ARG
80
A
CG
ARG
80
1
Y
1
A
CD
ARG
80
A
CD
ARG
80
1
Y
1
A
NE
ARG
80
A
NE
ARG
80
1
Y
1
A
CZ
ARG
80
A
CZ
ARG
80
1
Y
1
A
NH1
ARG
80
A
NH1
ARG
80
1
Y
1
A
NH2
ARG
80
A
NH2
ARG
80
1
Y
1
A
CD
LYS
83
A
CD
LYS
83
1
Y
1
A
CE
LYS
83
A
CE
LYS
83
1
Y
1
A
NZ
LYS
83
A
NZ
LYS
83
1
Y
1
A
OE1
GLN
122
A
OE1
GLN
122
1
Y
1
A
NE2
GLN
122
A
NE2
GLN
122
1
Y
1
A
NZ
LYS
147
A
NZ
LYS
147
1
Y
1
A
CD
LYS
162
A
CD
LYS
162
1
Y
1
A
CE
LYS
162
A
CE
LYS
162
1
Y
1
A
NZ
LYS
162
A
NZ
LYS
162
1
Y
1
A
CB
ASN
163
A
CB
ASN
163
1
Y
1
A
CG
ASN
163
A
CG
ASN
163
1
Y
1
A
OD1
ASN
163
A
OD1
ASN
163
1
Y
1
A
ND2
ASN
163
A
ND2
ASN
163
1
Y
1
A
LEU
165
A
LEU
165
1
Y
1
A
GLU
166
A
GLU
166
1
Y
1
A
HIS
167
A
HIS
167
1
Y
1
A
HIS
168
A
HIS
168
1
Y
1
A
HIS
169
A
HIS
169
1
Y
1
A
HIS
170
A
HIS
170
1
Y
1
A
HIS
171
A
HIS
171
1
Y
1
A
HIS
172
A
HIS
172
1
Y
1
A
A
GLY
PHE
113
114
B
B
138.92
1
A
VAL
111
B
-68.03
-114.69
1
A
ALA
112
B
88.31
-85.30
1
A
PHE
114
B
-84.15
41.14
62.420
17.1525
7.680
0.2430
-0.0000
-0.0000
0.2430
0.0000
-0.4860
0.2049
0.1736
0.1748
1.5600
46.0020
1185
28445
29630
4.0000
99.6200
0.3100
Random selection
1
FREE R-VALUE
1.990
MOLECULAR REPLACEMENT
18.0200
0.9500
1.2000
181L
ML
FLAT BULK SOLVENT MODEL
43.2270
0.3990
1.5600
46.0020
142
1447
25.59
27.16
22
0
1283
164
0.013
1406
1.406
1903
0.078
210
0.007
244
13.198
532
0.2480
0.2047
1.6310
146
3499
3645
8
99.0000
0.2560
0.1924
1.7170
144
3479
3623
8
100.0000
0.2239
0.1815
1.8246
146
3501
3647
8
100.0000
0.2182
0.1661
1.9655
147
3541
3688
8
100.0000
0.1942
0.1597
2.1633
148
3545
3693
8
100.0000
0.1829
0.1669
2.4763
148
3550
3698
8
100.0000
0.2113
0.1842
3.1198
150
3598
3748
8
100.0000
0.1947
0.1684
46.0217
156
3732
3888
8
99.0000
14.720
0.076
1.560
50.0
4W53
33182
-3.000
0.063
0.067
0.972
1
20.320
243127
8.1
99.600
0.391
0.494
1.560
1.660
4.470
39398
4962
4924
0.527
1
0
99.200
0.229
0.296
1.660
1.770
6.930
35147
4278
4263
0.316
1
0
99.600
0.147
0.191
1.770
1.910
10.480
34393
4093
4083
0.204
1
0
99.800
0.081
0.113
1.910
2.080
16.850
30762
3644
3641
0.121
1
0
99.900
0.052
0.076
2.080
2.250
24.320
21926
2620
2619
0.081
1
0
100.000
0.039
0.061
2.250
2.590
29.840
28484
3430
3430
0.065
1
0
100.000
0.030
0.048
2.590
3.170
35.930
24019
2993
2990
0.051
1
0
99.900
0.018
0.035
3.170
4.480
46.620
18768
2334
2333
0.037
1
0
100.000
0.016
0.033
4.480
10.000
48.080
9511
1247
1232
0.035
1
0
98.800
0.020
0.031
10.000
42.510
719
144
121
0.034
1
0
84.000
data scaling
XSCALE
data extraction
PDB_EXTRACT
3.15
refinement
PHENIX
(phenix.refine: 1.7.1_743)
model building
Coot
T4 Lysozyme L99A with Toluene Bound
1
N
N
2
N
N
3
N
N
4
N
N
A
ASN
2
A
ASN
2
HELX_P
A
GLY
12
A
GLY
12
1
AA1
11
A
SER
38
A
SER
38
HELX_P
A
GLY
51
A
GLY
51
1
AA2
14
A
THR
59
A
THR
59
HELX_P
A
ASN
81
A
ASN
81
1
AA3
23
A
LYS
83
A
LYS
83
HELX_P
A
LEU
91
A
LEU
91
1
AA4
9
A
ASP
92
A
ASP
92
HELX_P
A
GLY
107
A
GLY
107
1
AA5
16
A
GLY
107
A
GLY
107
HELX_P
A
GLY
113
A
GLY
113
1
AA6
7
A
PHE
114
A
PHE
114
HELX_P
A
GLN
123
A
GLN
123
1
AA7
10
A
ARG
125
A
ARG
125
HELX_P
A
LYS
135
A
LYS
135
1
AA8
11
A
SER
136
A
SER
136
HELX_P
A
THR
142
A
THR
142
1
AA9
7
A
THR
142
A
THR
142
HELX_P
A
GLY
156
A
GLY
156
1
AB1
15
HYDROLASE
HYDROLASE
A
LYS
162
A
LYS
162
1
A
ASN
163
A
ASN
163
-2.28
ENLYS_BPT4
UNP
1
1
P00720
MNIFEMLRIDERLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSIWYNQTPNRAKRVITTFRTGTWDA
YKNL
1
164
4W53
1
164
P00720
A
1
1
164
1
ARG
variant
GLY
12
4W53
A
P00720
UNP
12
12
1
LEU
engineered mutation
ALA
99
4W53
A
P00720
UNP
99
99
1
ILE
variant
ARG
137
4W53
A
P00720
UNP
137
137
1
expression tag
LEU
165
4W53
A
P00720
UNP
165
1
expression tag
GLU
166
4W53
A
P00720
UNP
166
1
expression tag
HIS
167
4W53
A
P00720
UNP
167
1
expression tag
HIS
168
4W53
A
P00720
UNP
168
1
expression tag
HIS
169
4W53
A
P00720
UNP
169
1
expression tag
HIS
170
4W53
A
P00720
UNP
170
1
expression tag
HIS
171
4W53
A
P00720
UNP
171
1
expression tag
HIS
172
4W53
A
P00720
UNP
172
3
anti-parallel
anti-parallel
A
ARG
14
A
ARG
14
A
LYS
19
A
LYS
19
A
TYR
25
A
TYR
25
A
GLY
28
A
GLY
28
A
HIS
31
A
HIS
31
A
THR
34
A
THR
34
binding site for residue MBN A 200
A
MBN
200
Software
4
binding site for residue EPE A 201
A
EPE
201
Software
7
A
ALA
99
A
ALA
99
4
1_555
A
VAL
111
A
VAL
111
4
1_555
A
LEU
118
A
LEU
118
4
1_555
A
PHE
153
A
PHE
153
4
1_555
A
GLY
30
A
GLY
30
7
1_555
A
HIS
31
A
HIS
31
7
1_555
A
LEU
32
A
LEU
32
7
1_555
A
LYS
35
A
LYS
35
7
1_555
A
ASP
70
A
ASP
70
7
1_555
A
PHE
104
A
PHE
104
7
1_555
A
HOH
439
D
HOH
7
1_555
154
P 32 2 1