0.016573 0.009568 0.000000 0.000000 0.019137 0.000000 0.000000 0.000000 0.010312 0.000000 0.000000 0.000000 Merski, M. Shoichet, B.K. Eidam, O. Fischer, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 60.340 60.340 96.970 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C8 H18 N2 O4 S 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HEPES non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C7 H8 92.138 TOLUENE non-polymer C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 N C N 90 N C N 91 N N N 92 N C N 93 N C N 94 N C N 95 N C N 96 N O N 97 N C N 98 N C N 99 N S N 100 N O N 101 N O N 102 N O N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N N N 122 S C N 123 N C N 124 N O N 125 N C N 126 N C N 127 N C N 128 N O N 129 N N N 130 N O N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N N N 142 S C N 143 N C N 144 N O N 145 N C N 146 N C N 147 N C N 148 N O N 149 N O N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 N C N 162 N C N 163 N O N 164 N O N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C Y 175 N C Y 176 N N Y 177 N C Y 178 N C Y 179 N N N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N O N 192 N H N 193 N H N 194 N N N 195 S C N 196 N C N 197 N O N 198 S C N 199 N C N 200 N C N 201 N C N 202 N O N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N C N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N N N 239 S C N 240 N C N 241 N O N 242 N C N 243 N C N 244 N C N 245 N C N 246 N N N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N C Y 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N N N 279 S C N 280 N C N 281 N O N 282 N C N 283 N C N 284 N S N 285 N C N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N N N 299 S C N 300 N C N 301 N O N 302 N C Y 303 N C Y 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C N 326 N C N 327 N C N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C N 343 N O N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 R C N 357 N O N 358 N C N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N N Y 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N C N 383 N O N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C N 407 N O N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C N 425 N C N 426 N C N 427 N O N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N doub N 169 N sing N 170 N sing N 171 N sing N 172 N sing Y 173 N sing Y 174 N doub Y 175 N doub N 176 N sing Y 177 N sing N 178 N sing Y 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing Y 255 N doub Y 256 N sing Y 257 N sing N 258 N sing Y 259 N doub N 260 N sing Y 261 N sing N 262 N sing Y 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing Y 296 N doub Y 297 N sing Y 298 N sing N 299 N sing Y 300 N doub N 301 N sing Y 302 N doub N 303 N sing Y 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing Y 365 N doub Y 366 N sing Y 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N sing Y 374 N doub N 375 N sing Y 376 N doub N 377 N sing Y 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N doub N 389 N sing N 390 N sing N 391 N sing N 392 N sing Y 393 N doub Y 394 N sing Y 395 N sing N 396 N sing Y 397 N doub N 398 N sing Y 399 N doub N 400 N sing Y 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 1091-6490 112 5039 5044 10.1073/pnas.1500806112 25847998 Homologous ligands accommodated by discrete conformations of a buried cavity. 2015 10.2210/pdb4w53/pdb pdb_00004w53 100 1 CCD 2009-07-23 ADSC QUANTUM 315r two flat Si(111) crystals, mounted in a model DCM from Khozu SINGLE WAVELENGTH M x-ray 1 1.116 1.0 8.3.1 ALS 1.116 SYNCHROTRON ALS BEAMLINE 8.3.1 19691.541 Endolysin 3.2.1.17 L99A 1 man polymer 92.138 TOLUENE 1 syn non-polymer 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID 1 syn non-polymer 18.015 water 142 nat water Lysis protein,Lysozyme,Muramidase no no MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNLLEHHHHHH MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNLLEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 172 10665 Enterobacteria phage T4 469008 Escherichia coli BL21(DE3) plasmid Biological sequence pET29 1 2.59 52.47 VAPOR DIFFUSION, HANGING DROP 7.5 20% (w/v) PEGF-4000, 10% 2-propanol, 0.1 M HEPES, 50 mM 2-mercaptoethanol, 50 mM 2-hydroxyethyl disulfide 277 citation entity_src_gen pdbx_audit_support pdbx_database_status pdbx_struct_assembly pdbx_struct_assembly_prop pdbx_struct_oper_list software pdbx_audit_support chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model refine_hist repository Initial release Database references Database references Author supporting evidence Database references Derived calculations Other Source and taxonomy Refinement description Author supporting evidence Data collection Database references Refinement description 1 0 2015-04-01 1 1 2015-04-22 1 2 2015-05-06 1 3 2017-09-06 1 4 2017-11-22 1 5 2019-12-25 1 6 2023-09-27 _citation.journal_id_CSD _entity_src_gen.pdbx_alt_source_flag _pdbx_audit_support.funding_organization _pdbx_database_status.pdb_format_compatible _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_oper_list.symmetry_operation _pdbx_audit_support.funding_organization _database_2.pdbx_DOI _database_2.pdbx_database_accession _refine_hist.number_atoms_total _refine_hist.pdbx_number_atoms_nucleic_acid _refine_hist.pdbx_number_atoms_protein United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM59957 N RCSB Y RCSB 2014-08-16 REL REL MBN TOLUENE EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HOH water 181L PDB experimental model DRG 200 2 MBN MBN 200 A EPE 201 3 EPE EPE 201 A HOH 99 4 HOH HOH 301 A HOH 60 4 HOH HOH 302 A HOH 2 4 HOH HOH 303 A HOH 44 4 HOH HOH 304 A HOH 94 4 HOH HOH 305 A HOH 1 4 HOH HOH 306 A HOH 39 4 HOH HOH 307 A HOH 37 4 HOH HOH 308 A HOH 58 4 HOH HOH 309 A HOH 22 4 HOH HOH 310 A HOH 48 4 HOH HOH 311 A HOH 41 4 HOH HOH 312 A HOH 66 4 HOH HOH 313 A HOH 38 4 HOH HOH 314 A HOH 15 4 HOH HOH 315 A HOH 29 4 HOH HOH 316 A HOH 73 4 HOH HOH 317 A HOH 67 4 HOH HOH 318 A HOH 91 4 HOH HOH 319 A HOH 69 4 HOH HOH 320 A HOH 40 4 HOH HOH 321 A HOH 77 4 HOH HOH 322 A HOH 106 4 HOH HOH 323 A HOH 4 4 HOH HOH 324 A HOH 18 4 HOH HOH 325 A HOH 56 4 HOH HOH 326 A HOH 97 4 HOH HOH 327 A HOH 68 4 HOH HOH 328 A HOH 17 4 HOH HOH 329 A HOH 130 4 HOH HOH 330 A HOH 89 4 HOH HOH 331 A HOH 6 4 HOH HOH 332 A HOH 23 4 HOH HOH 333 A HOH 83 4 HOH HOH 334 A HOH 136 4 HOH HOH 335 A HOH 100 4 HOH HOH 336 A HOH 28 4 HOH HOH 337 A HOH 88 4 HOH HOH 338 A HOH 35 4 HOH HOH 339 A HOH 126 4 HOH HOH 340 A HOH 5 4 HOH HOH 341 A HOH 36 4 HOH HOH 342 A HOH 111 4 HOH HOH 343 A HOH 31 4 HOH HOH 344 A HOH 129 4 HOH HOH 345 A HOH 26 4 HOH HOH 346 A HOH 45 4 HOH HOH 347 A HOH 46 4 HOH HOH 348 A HOH 7 4 HOH HOH 349 A HOH 90 4 HOH HOH 350 A HOH 47 4 HOH HOH 351 A HOH 135 4 HOH HOH 352 A HOH 131 4 HOH HOH 353 A HOH 3 4 HOH HOH 354 A HOH 105 4 HOH HOH 355 A HOH 13 4 HOH HOH 356 A HOH 139 4 HOH HOH 357 A HOH 137 4 HOH HOH 358 A HOH 14 4 HOH HOH 359 A HOH 70 4 HOH HOH 360 A HOH 95 4 HOH HOH 361 A HOH 27 4 HOH HOH 362 A HOH 81 4 HOH HOH 363 A HOH 138 4 HOH HOH 364 A HOH 142 4 HOH HOH 365 A HOH 96 4 HOH HOH 366 A HOH 8 4 HOH HOH 367 A HOH 9 4 HOH HOH 368 A HOH 10 4 HOH HOH 369 A HOH 11 4 HOH HOH 370 A HOH 12 4 HOH HOH 371 A HOH 16 4 HOH HOH 372 A HOH 19 4 HOH HOH 373 A HOH 20 4 HOH HOH 374 A HOH 21 4 HOH HOH 375 A HOH 24 4 HOH HOH 376 A HOH 25 4 HOH HOH 377 A HOH 30 4 HOH HOH 378 A HOH 32 4 HOH HOH 379 A HOH 33 4 HOH HOH 380 A HOH 34 4 HOH HOH 381 A HOH 42 4 HOH HOH 382 A HOH 43 4 HOH HOH 383 A HOH 49 4 HOH HOH 384 A HOH 50 4 HOH HOH 385 A HOH 51 4 HOH HOH 386 A HOH 52 4 HOH HOH 387 A HOH 53 4 HOH HOH 388 A HOH 54 4 HOH HOH 389 A HOH 55 4 HOH HOH 390 A HOH 57 4 HOH HOH 391 A HOH 59 4 HOH HOH 392 A HOH 61 4 HOH HOH 393 A HOH 62 4 HOH HOH 394 A HOH 63 4 HOH HOH 395 A HOH 64 4 HOH HOH 396 A HOH 65 4 HOH HOH 397 A HOH 71 4 HOH HOH 398 A HOH 72 4 HOH HOH 399 A HOH 74 4 HOH HOH 400 A HOH 75 4 HOH HOH 401 A HOH 76 4 HOH HOH 402 A HOH 78 4 HOH HOH 403 A HOH 79 4 HOH HOH 404 A HOH 80 4 HOH HOH 405 A HOH 82 4 HOH HOH 406 A HOH 84 4 HOH HOH 407 A HOH 85 4 HOH HOH 408 A HOH 86 4 HOH HOH 409 A HOH 87 4 HOH HOH 410 A HOH 92 4 HOH HOH 411 A HOH 93 4 HOH HOH 412 A HOH 98 4 HOH HOH 413 A HOH 101 4 HOH HOH 414 A HOH 102 4 HOH HOH 415 A HOH 103 4 HOH HOH 416 A HOH 104 4 HOH HOH 417 A HOH 107 4 HOH HOH 418 A HOH 108 4 HOH HOH 419 A HOH 109 4 HOH HOH 420 A HOH 110 4 HOH HOH 421 A HOH 112 4 HOH HOH 422 A HOH 113 4 HOH HOH 423 A HOH 114 4 HOH HOH 424 A HOH 115 4 HOH HOH 425 A HOH 116 4 HOH HOH 426 A HOH 117 4 HOH HOH 427 A HOH 118 4 HOH HOH 428 A HOH 119 4 HOH HOH 429 A HOH 120 4 HOH HOH 430 A HOH 121 4 HOH HOH 431 A HOH 122 4 HOH HOH 432 A HOH 123 4 HOH HOH 433 A HOH 124 4 HOH HOH 434 A HOH 125 4 HOH HOH 435 A HOH 127 4 HOH HOH 436 A HOH 128 4 HOH HOH 437 A HOH 132 4 HOH HOH 438 A HOH 133 4 HOH HOH 439 A HOH 134 4 HOH HOH 440 A HOH 140 4 HOH HOH 441 A HOH 141 4 HOH HOH 442 A MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A GLU 5 n 5 GLU 5 A MET 6 n 6 MET 6 A LEU 7 n 7 LEU 7 A ARG 8 n 8 ARG 8 A ILE 9 n 9 ILE 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A ILE 17 n 17 ILE 17 A TYR 18 n 18 TYR 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A THR 21 n 21 THR 21 A GLU 22 n 22 GLU 22 A GLY 23 n 23 GLY 23 A TYR 24 n 24 TYR 24 A TYR 25 n 25 TYR 25 A THR 26 n 26 THR 26 A ILE 27 n 27 ILE 27 A GLY 28 n 28 GLY 28 A ILE 29 n 29 ILE 29 A GLY 30 n 30 GLY 30 A HIS 31 n 31 HIS 31 A LEU 32 n 32 LEU 32 A LEU 33 n 33 LEU 33 A THR 34 n 34 THR 34 A LYS 35 n 35 LYS 35 A SER 36 n 36 SER 36 A PRO 37 n 37 PRO 37 A SER 38 n 38 SER 38 A LEU 39 n 39 LEU 39 A ASN 40 n 40 ASN 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A LYS 43 n 43 LYS 43 A SER 44 n 44 SER 44 A GLU 45 n 45 GLU 45 A LEU 46 n 46 LEU 46 A ASP 47 n 47 ASP 47 A LYS 48 n 48 LYS 48 A ALA 49 n 49 ALA 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A ARG 52 n 52 ARG 52 A ASN 53 n 53 ASN 53 A CYS 54 n 54 CYS 54 A ASN 55 n 55 ASN 55 A GLY 56 n 56 GLY 56 A VAL 57 n 57 VAL 57 A ILE 58 n 58 ILE 58 A THR 59 n 59 THR 59 A LYS 60 n 60 LYS 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ALA 63 n 63 ALA 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A LEU 66 n 66 LEU 66 A PHE 67 n 67 PHE 67 A ASN 68 n 68 ASN 68 A GLN 69 n 69 GLN 69 A ASP 70 n 70 ASP 70 A VAL 71 n 71 VAL 71 A ASP 72 n 72 ASP 72 A ALA 73 n 73 ALA 73 A ALA 74 n 74 ALA 74 A VAL 75 n 75 VAL 75 A ARG 76 n 76 ARG 76 A GLY 77 n 77 GLY 77 A ILE 78 n 78 ILE 78 A LEU 79 n 79 LEU 79 A ARG 80 n 80 ARG 80 A ASN 81 n 81 ASN 81 A ALA 82 n 82 ALA 82 A LYS 83 n 83 LYS 83 A LEU 84 n 84 LEU 84 A LYS 85 n 85 LYS 85 A PRO 86 n 86 PRO 86 A VAL 87 n 87 VAL 87 A TYR 88 n 88 TYR 88 A ASP 89 n 89 ASP 89 A SER 90 n 90 SER 90 A LEU 91 n 91 LEU 91 A ASP 92 n 92 ASP 92 A ALA 93 n 93 ALA 93 A VAL 94 n 94 VAL 94 A ARG 95 n 95 ARG 95 A ARG 96 n 96 ARG 96 A CYS 97 n 97 CYS 97 A ALA 98 n 98 ALA 98 A ALA 99 n 99 ALA 99 A ILE 100 n 100 ILE 100 A ASN 101 n 101 ASN 101 A MET 102 n 102 MET 102 A VAL 103 n 103 VAL 103 A PHE 104 n 104 PHE 104 A GLN 105 n 105 GLN 105 A MET 106 n 106 MET 106 A GLY 107 n 107 GLY 107 A GLU 108 n 108 GLU 108 A THR 109 n 109 THR 109 A GLY 110 n 110 GLY 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A GLY 113 n 113 GLY 113 A PHE 114 n 114 PHE 114 A THR 115 n 115 THR 115 A ASN 116 n 116 ASN 116 A SER 117 n 117 SER 117 A LEU 118 n 118 LEU 118 A ARG 119 n 119 ARG 119 A MET 120 n 120 MET 120 A LEU 121 n 121 LEU 121 A GLN 122 n 122 GLN 122 A GLN 123 n 123 GLN 123 A LYS 124 n 124 LYS 124 A ARG 125 n 125 ARG 125 A TRP 126 n 126 TRP 126 A ASP 127 n 127 ASP 127 A GLU 128 n 128 GLU 128 A ALA 129 n 129 ALA 129 A ALA 130 n 130 ALA 130 A VAL 131 n 131 VAL 131 A ASN 132 n 132 ASN 132 A LEU 133 n 133 LEU 133 A ALA 134 n 134 ALA 134 A LYS 135 n 135 LYS 135 A SER 136 n 136 SER 136 A ARG 137 n 137 ARG 137 A TRP 138 n 138 TRP 138 A TYR 139 n 139 TYR 139 A ASN 140 n 140 ASN 140 A GLN 141 n 141 GLN 141 A THR 142 n 142 THR 142 A PRO 143 n 143 PRO 143 A ASN 144 n 144 ASN 144 A ARG 145 n 145 ARG 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A ARG 148 n 148 ARG 148 A VAL 149 n 149 VAL 149 A ILE 150 n 150 ILE 150 A THR 151 n 151 THR 151 A THR 152 n 152 THR 152 A PHE 153 n 153 PHE 153 A ARG 154 n 154 ARG 154 A THR 155 n 155 THR 155 A GLY 156 n 156 GLY 156 A THR 157 n 157 THR 157 A TRP 158 n 158 TRP 158 A ASP 159 n 159 ASP 159 A ALA 160 n 160 ALA 160 A TYR 161 n 161 TYR 161 A LYS 162 n 162 LYS 162 A ASN 163 n 163 ASN 163 A LEU 164 n 164 LEU 164 A n 165 165 A n 166 166 A n 167 167 A n 168 168 A n 169 169 A n 170 170 A n 171 171 A n 172 172 A author_and_software_defined_assembly PISA 1 monomeric 760 10 8500 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 18 A N TYR 18 A O THR 26 A O THR 26 A N TYR 25 A N TYR 25 A O LEU 33 A O LEU 33 1 A CE LYS 16 A CE LYS 16 1 Y 1 A NZ LYS 16 A NZ LYS 16 1 Y 1 A NZ LYS 60 A NZ LYS 60 1 Y 1 A CG ARG 80 A CG ARG 80 1 Y 1 A CD ARG 80 A CD ARG 80 1 Y 1 A NE ARG 80 A NE ARG 80 1 Y 1 A CZ ARG 80 A CZ ARG 80 1 Y 1 A NH1 ARG 80 A NH1 ARG 80 1 Y 1 A NH2 ARG 80 A NH2 ARG 80 1 Y 1 A CD LYS 83 A CD LYS 83 1 Y 1 A CE LYS 83 A CE LYS 83 1 Y 1 A NZ LYS 83 A NZ LYS 83 1 Y 1 A OE1 GLN 122 A OE1 GLN 122 1 Y 1 A NE2 GLN 122 A NE2 GLN 122 1 Y 1 A NZ LYS 147 A NZ LYS 147 1 Y 1 A CD LYS 162 A CD LYS 162 1 Y 1 A CE LYS 162 A CE LYS 162 1 Y 1 A NZ LYS 162 A NZ LYS 162 1 Y 1 A CB ASN 163 A CB ASN 163 1 Y 1 A CG ASN 163 A CG ASN 163 1 Y 1 A OD1 ASN 163 A OD1 ASN 163 1 Y 1 A ND2 ASN 163 A ND2 ASN 163 1 Y 1 A LEU 165 A LEU 165 1 Y 1 A GLU 166 A GLU 166 1 Y 1 A HIS 167 A HIS 167 1 Y 1 A HIS 168 A HIS 168 1 Y 1 A HIS 169 A HIS 169 1 Y 1 A HIS 170 A HIS 170 1 Y 1 A HIS 171 A HIS 171 1 Y 1 A HIS 172 A HIS 172 1 Y 1 A A GLY PHE 113 114 B B 138.92 1 A VAL 111 B -68.03 -114.69 1 A ALA 112 B 88.31 -85.30 1 A PHE 114 B -84.15 41.14 62.420 17.1525 7.680 0.2430 -0.0000 -0.0000 0.2430 0.0000 -0.4860 0.2049 0.1736 0.1748 1.5600 46.0020 1185 28445 29630 4.0000 99.6200 0.3100 Random selection 1 FREE R-VALUE 1.990 MOLECULAR REPLACEMENT 18.0200 0.9500 1.2000 181L ML FLAT BULK SOLVENT MODEL 43.2270 0.3990 1.5600 46.0020 142 1447 25.59 27.16 22 0 1283 164 0.013 1406 1.406 1903 0.078 210 0.007 244 13.198 532 0.2480 0.2047 1.6310 146 3499 3645 8 99.0000 0.2560 0.1924 1.7170 144 3479 3623 8 100.0000 0.2239 0.1815 1.8246 146 3501 3647 8 100.0000 0.2182 0.1661 1.9655 147 3541 3688 8 100.0000 0.1942 0.1597 2.1633 148 3545 3693 8 100.0000 0.1829 0.1669 2.4763 148 3550 3698 8 100.0000 0.2113 0.1842 3.1198 150 3598 3748 8 100.0000 0.1947 0.1684 46.0217 156 3732 3888 8 99.0000 14.720 0.076 1.560 50.0 4W53 33182 -3.000 0.063 0.067 0.972 1 20.320 243127 8.1 99.600 0.391 0.494 1.560 1.660 4.470 39398 4962 4924 0.527 1 0 99.200 0.229 0.296 1.660 1.770 6.930 35147 4278 4263 0.316 1 0 99.600 0.147 0.191 1.770 1.910 10.480 34393 4093 4083 0.204 1 0 99.800 0.081 0.113 1.910 2.080 16.850 30762 3644 3641 0.121 1 0 99.900 0.052 0.076 2.080 2.250 24.320 21926 2620 2619 0.081 1 0 100.000 0.039 0.061 2.250 2.590 29.840 28484 3430 3430 0.065 1 0 100.000 0.030 0.048 2.590 3.170 35.930 24019 2993 2990 0.051 1 0 99.900 0.018 0.035 3.170 4.480 46.620 18768 2334 2333 0.037 1 0 100.000 0.016 0.033 4.480 10.000 48.080 9511 1247 1232 0.035 1 0 98.800 0.020 0.031 10.000 42.510 719 144 121 0.034 1 0 84.000 data scaling XSCALE data extraction PDB_EXTRACT 3.15 refinement PHENIX (phenix.refine: 1.7.1_743) model building Coot T4 Lysozyme L99A with Toluene Bound 1 N N 2 N N 3 N N 4 N N A ASN 2 A ASN 2 HELX_P A GLY 12 A GLY 12 1 AA1 11 A SER 38 A SER 38 HELX_P A GLY 51 A GLY 51 1 AA2 14 A THR 59 A THR 59 HELX_P A ASN 81 A ASN 81 1 AA3 23 A LYS 83 A LYS 83 HELX_P A LEU 91 A LEU 91 1 AA4 9 A ASP 92 A ASP 92 HELX_P A GLY 107 A GLY 107 1 AA5 16 A GLY 107 A GLY 107 HELX_P A GLY 113 A GLY 113 1 AA6 7 A PHE 114 A PHE 114 HELX_P A GLN 123 A GLN 123 1 AA7 10 A ARG 125 A ARG 125 HELX_P A LYS 135 A LYS 135 1 AA8 11 A SER 136 A SER 136 HELX_P A THR 142 A THR 142 1 AA9 7 A THR 142 A THR 142 HELX_P A GLY 156 A GLY 156 1 AB1 15 HYDROLASE HYDROLASE A LYS 162 A LYS 162 1 A ASN 163 A ASN 163 -2.28 ENLYS_BPT4 UNP 1 1 P00720 MNIFEMLRIDERLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSIWYNQTPNRAKRVITTFRTGTWDA YKNL 1 164 4W53 1 164 P00720 A 1 1 164 1 ARG variant GLY 12 4W53 A P00720 UNP 12 12 1 LEU engineered mutation ALA 99 4W53 A P00720 UNP 99 99 1 ILE variant ARG 137 4W53 A P00720 UNP 137 137 1 expression tag LEU 165 4W53 A P00720 UNP 165 1 expression tag GLU 166 4W53 A P00720 UNP 166 1 expression tag HIS 167 4W53 A P00720 UNP 167 1 expression tag HIS 168 4W53 A P00720 UNP 168 1 expression tag HIS 169 4W53 A P00720 UNP 169 1 expression tag HIS 170 4W53 A P00720 UNP 170 1 expression tag HIS 171 4W53 A P00720 UNP 171 1 expression tag HIS 172 4W53 A P00720 UNP 172 3 anti-parallel anti-parallel A ARG 14 A ARG 14 A LYS 19 A LYS 19 A TYR 25 A TYR 25 A GLY 28 A GLY 28 A HIS 31 A HIS 31 A THR 34 A THR 34 binding site for residue MBN A 200 A MBN 200 Software 4 binding site for residue EPE A 201 A EPE 201 Software 7 A ALA 99 A ALA 99 4 1_555 A VAL 111 A VAL 111 4 1_555 A LEU 118 A LEU 118 4 1_555 A PHE 153 A PHE 153 4 1_555 A GLY 30 A GLY 30 7 1_555 A HIS 31 A HIS 31 7 1_555 A LEU 32 A LEU 32 7 1_555 A LYS 35 A LYS 35 7 1_555 A ASP 70 A ASP 70 7 1_555 A PHE 104 A PHE 104 7 1_555 A HOH 439 D HOH 7 1_555 154 P 32 2 1