0.024863
0.000000
0.002059
0.000000
0.020934
0.000000
0.000000
0.000000
0.018551
0.000000
0.000000
0.000000
Myllykoski, M.
Raasakka, A.
Kursula, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.000
94.730
90.000
40.220
47.770
54.090
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
O
N
142
N
C
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
S
C
N
154
N
C
N
155
N
O
N
156
N
C
Y
157
N
C
Y
158
N
N
Y
159
N
C
Y
160
N
C
Y
161
N
N
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
S
C
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
N
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
S
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
O
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
R
C
N
324
N
O
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
N
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
N
374
N
O
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
N
392
N
C
N
393
N
C
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
doub
N
342
N
sing
Y
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
UK
Sci Rep
2045-2322
5
16520
16520
10.1038/srep16520
26563764
Determinants of ligand binding and catalytic activity in the myelin enzyme 2',3'-cyclic nucleotide 3'-phosphodiesterase.
2015
10.2210/pdb4wbl/pdb
pdb_00004wbl
100
1
CCD
2012-05-19
RAYONIX MX-225
SINGLE WAVELENGTH
M
x-ray
1
1.223
1.0
P14 (MX2)
PETRA III, EMBL c/o DESY
1.223
SYNCHROTRON
PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
24217.830
2',3'-cyclic-nucleotide 3'-phosphodiesterase
3.1.4.37
catalytic domain, UNP residues 179-398
F235A
1
man
polymer
35.453
CHLORIDE ION
2
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
68
nat
water
CNPase
no
no
GGLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSYFGKRPPGVLHCTTKACD
YGKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQVVLTDQELQLWPSDLDKPSASEGLPPGSRAHVTLGCAAD
VQPVQTGLDLLDILQQVKGGSQGEAVGELPRGKLYSLGKGRWMLSLTKKMEVKAIFTGYYG
GGLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSYFGKRPPGVLHCTTKACD
YGKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQVVLTDQELQLWPSDLDKPSASEGLPPGSRAHVTLGCAAD
VQPVQTGLDLLDILQQVKGGSQGEAVGELPRGKLYSLGKGRWMLSLTKKMEVKAIFTGYYG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mouse
sample
1
221
Cnp, Cnp1
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
Rosetta
plasmid
Biological sequence
pTH27
1
2.13
42.30
VAPOR DIFFUSION, SITTING DROP
Na-acetate, PEG 4000/6000
298
diffrn_source
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Data collection
Database references
Refinement description
1
0
2015-09-23
1
1
2018-03-07
1
2
2024-01-10
_diffrn_source.pdbx_synchrotron_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
RCSB
Y
PDBE
2014-09-03
REL
REL
CL
CHLORIDE ION
GOL
GLYCEROL
HOH
water
2XMI
PDB
experimental model
CL
1
2
CL
CL
401
A
CL
1
2
CL
CL
402
A
GOL
1
3
GOL
GOL
403
A
HOH
13
4
HOH
HOH
501
A
HOH
23
4
HOH
HOH
502
A
HOH
33
4
HOH
HOH
503
A
HOH
24
4
HOH
HOH
504
A
HOH
45
4
HOH
HOH
505
A
HOH
38
4
HOH
HOH
506
A
HOH
7
4
HOH
HOH
507
A
HOH
36
4
HOH
HOH
508
A
HOH
17
4
HOH
HOH
509
A
HOH
22
4
HOH
HOH
510
A
HOH
66
4
HOH
HOH
511
A
HOH
35
4
HOH
HOH
512
A
HOH
19
4
HOH
HOH
513
A
HOH
21
4
HOH
HOH
514
A
HOH
60
4
HOH
HOH
515
A
HOH
53
4
HOH
HOH
516
A
HOH
39
4
HOH
HOH
517
A
HOH
69
4
HOH
HOH
518
A
HOH
73
4
HOH
HOH
519
A
HOH
28
4
HOH
HOH
520
A
HOH
76
4
HOH
HOH
521
A
HOH
68
4
HOH
HOH
522
A
HOH
51
4
HOH
HOH
523
A
HOH
50
4
HOH
HOH
524
A
HOH
65
4
HOH
HOH
525
A
HOH
48
4
HOH
HOH
526
A
HOH
77
4
HOH
HOH
527
A
HOH
1
4
HOH
HOH
528
A
HOH
2
4
HOH
HOH
529
A
HOH
3
4
HOH
HOH
530
A
HOH
4
4
HOH
HOH
531
A
HOH
5
4
HOH
HOH
532
A
HOH
6
4
HOH
HOH
533
A
HOH
8
4
HOH
HOH
534
A
HOH
9
4
HOH
HOH
535
A
HOH
10
4
HOH
HOH
536
A
HOH
11
4
HOH
HOH
537
A
HOH
12
4
HOH
HOH
538
A
HOH
14
4
HOH
HOH
539
A
HOH
15
4
HOH
HOH
540
A
HOH
16
4
HOH
HOH
541
A
HOH
18
4
HOH
HOH
542
A
HOH
20
4
HOH
HOH
543
A
HOH
25
4
HOH
HOH
544
A
HOH
26
4
HOH
HOH
545
A
HOH
27
4
HOH
HOH
546
A
HOH
29
4
HOH
HOH
547
A
HOH
30
4
HOH
HOH
548
A
HOH
31
4
HOH
HOH
549
A
HOH
32
4
HOH
HOH
550
A
HOH
34
4
HOH
HOH
551
A
HOH
37
4
HOH
HOH
552
A
HOH
40
4
HOH
HOH
553
A
HOH
41
4
HOH
HOH
554
A
HOH
43
4
HOH
HOH
555
A
HOH
44
4
HOH
HOH
556
A
HOH
46
4
HOH
HOH
557
A
HOH
47
4
HOH
HOH
558
A
HOH
57
4
HOH
HOH
559
A
HOH
58
4
HOH
HOH
560
A
HOH
61
4
HOH
HOH
561
A
HOH
64
4
HOH
HOH
562
A
HOH
70
4
HOH
HOH
563
A
HOH
71
4
HOH
HOH
564
A
HOH
72
4
HOH
HOH
565
A
HOH
74
4
HOH
HOH
566
A
HOH
75
4
HOH
HOH
567
A
HOH
78
4
HOH
HOH
568
A
n
1
158
A
n
2
159
A
n
3
160
A
n
4
161
A
n
5
162
A
n
6
163
A
PHE
164
n
7
PHE
164
A
LEU
165
n
8
LEU
165
A
PRO
166
n
9
PRO
166
A
LEU
167
n
10
LEU
167
A
TYR
168
n
11
TYR
168
A
PHE
169
n
12
PHE
169
A
GLY
170
n
13
GLY
170
A
TRP
171
n
14
TRP
171
A
PHE
172
n
15
PHE
172
A
LEU
173
n
16
LEU
173
A
THR
174
n
17
THR
174
A
LYS
175
n
18
LYS
175
A
LYS
176
n
19
LYS
176
A
SER
177
n
20
SER
177
A
SER
178
n
21
SER
178
A
GLU
179
n
22
GLU
179
A
THR
180
n
23
THR
180
A
LEU
181
n
24
LEU
181
A
ARG
182
n
25
ARG
182
A
LYS
183
n
26
LYS
183
A
ALA
184
n
27
ALA
184
A
GLY
185
n
28
GLY
185
A
GLN
186
n
29
GLN
186
A
VAL
187
n
30
VAL
187
A
PHE
188
n
31
PHE
188
A
LEU
189
n
32
LEU
189
A
GLU
190
n
33
GLU
190
A
GLU
191
n
34
GLU
191
A
LEU
192
n
35
LEU
192
A
GLY
193
n
36
GLY
193
A
ASN
194
n
37
ASN
194
A
HIS
195
n
38
HIS
195
A
LYS
196
n
39
LYS
196
A
ALA
197
n
40
ALA
197
A
PHE
198
n
41
PHE
198
A
LYS
199
n
42
LYS
199
A
LYS
200
n
43
LYS
200
A
GLU
201
n
44
GLU
201
A
LEU
202
n
45
LEU
202
A
ARG
203
n
46
ARG
203
A
HIS
204
n
47
HIS
204
A
PHE
205
n
48
PHE
205
A
ILE
206
n
49
ILE
206
A
SER
207
n
50
SER
207
A
GLY
208
n
51
GLY
208
A
ASP
209
n
52
ASP
209
A
n
53
210
A
n
54
211
A
n
55
212
A
GLU
213
n
56
GLU
213
A
LYS
214
n
57
LYS
214
A
LEU
215
n
58
LEU
215
A
GLU
216
n
59
GLU
216
A
LEU
217
n
60
LEU
217
A
VAL
218
n
61
VAL
218
A
SER
219
n
62
SER
219
A
TYR
220
n
63
TYR
220
A
PHE
221
n
64
PHE
221
A
GLY
222
n
65
GLY
222
A
LYS
223
n
66
LYS
223
A
ARG
224
n
67
ARG
224
A
PRO
225
n
68
PRO
225
A
PRO
226
n
69
PRO
226
A
GLY
227
n
70
GLY
227
A
VAL
228
n
71
VAL
228
A
LEU
229
n
72
LEU
229
A
HIS
230
n
73
HIS
230
A
CYS
231
n
74
CYS
231
A
THR
232
n
75
THR
232
A
THR
233
n
76
THR
233
A
LYS
234
n
77
LYS
234
A
ALA
235
n
78
ALA
235
A
CYS
236
n
79
CYS
236
A
ASP
237
n
80
ASP
237
A
TYR
238
n
81
TYR
238
A
GLY
239
n
82
GLY
239
A
LYS
240
n
83
LYS
240
A
ALA
241
n
84
ALA
241
A
ALA
242
n
85
ALA
242
A
GLY
243
n
86
GLY
243
A
ALA
244
n
87
ALA
244
A
GLU
245
n
88
GLU
245
A
GLU
246
n
89
GLU
246
A
TYR
247
n
90
TYR
247
A
ALA
248
n
91
ALA
248
A
GLN
249
n
92
GLN
249
A
GLN
250
n
93
GLN
250
A
GLU
251
n
94
GLU
251
A
VAL
252
n
95
VAL
252
A
VAL
253
n
96
VAL
253
A
LYS
254
n
97
LYS
254
A
ARG
255
n
98
ARG
255
A
SER
256
n
99
SER
256
A
TYR
257
n
100
TYR
257
A
GLY
258
n
101
GLY
258
A
LYS
259
n
102
LYS
259
A
ALA
260
n
103
ALA
260
A
PHE
261
n
104
PHE
261
A
LYS
262
n
105
LYS
262
A
LEU
263
n
106
LEU
263
A
SER
264
n
107
SER
264
A
ILE
265
n
108
ILE
265
A
SER
266
n
109
SER
266
A
ALA
267
n
110
ALA
267
A
LEU
268
n
111
LEU
268
A
PHE
269
n
112
PHE
269
A
VAL
270
n
113
VAL
270
A
THR
271
n
114
THR
271
A
PRO
272
n
115
PRO
272
A
LYS
273
n
116
LYS
273
A
THR
274
n
117
THR
274
A
ALA
275
n
118
ALA
275
A
GLY
276
n
119
GLY
276
A
ALA
277
n
120
ALA
277
A
GLN
278
n
121
GLN
278
A
VAL
279
n
122
VAL
279
A
VAL
280
n
123
VAL
280
A
LEU
281
n
124
LEU
281
A
THR
282
n
125
THR
282
A
ASP
283
n
126
ASP
283
A
GLN
284
n
127
GLN
284
A
GLU
285
n
128
GLU
285
A
LEU
286
n
129
LEU
286
A
GLN
287
n
130
GLN
287
A
LEU
288
n
131
LEU
288
A
TRP
289
n
132
TRP
289
A
PRO
290
n
133
PRO
290
A
SER
291
n
134
SER
291
A
ASP
292
n
135
ASP
292
A
LEU
293
n
136
LEU
293
A
ASP
294
n
137
ASP
294
A
LYS
295
n
138
LYS
295
A
PRO
296
n
139
PRO
296
A
SER
297
n
140
SER
297
A
ALA
298
n
141
ALA
298
A
SER
299
n
142
SER
299
A
GLU
300
n
143
GLU
300
A
GLY
301
n
144
GLY
301
A
LEU
302
n
145
LEU
302
A
PRO
303
n
146
PRO
303
A
PRO
304
n
147
PRO
304
A
GLY
305
n
148
GLY
305
A
SER
306
n
149
SER
306
A
ARG
307
n
150
ARG
307
A
ALA
308
n
151
ALA
308
A
HIS
309
n
152
HIS
309
A
VAL
310
n
153
VAL
310
A
THR
311
n
154
THR
311
A
LEU
312
n
155
LEU
312
A
GLY
313
n
156
GLY
313
A
CYS
314
n
157
CYS
314
A
ALA
315
n
158
ALA
315
A
ALA
316
n
159
ALA
316
A
ASP
317
n
160
ASP
317
A
VAL
318
n
161
VAL
318
A
GLN
319
n
162
GLN
319
A
PRO
320
n
163
PRO
320
A
VAL
321
n
164
VAL
321
A
GLN
322
n
165
GLN
322
A
THR
323
n
166
THR
323
A
GLY
324
n
167
GLY
324
A
LEU
325
n
168
LEU
325
A
ASP
326
n
169
ASP
326
A
LEU
327
n
170
LEU
327
A
LEU
328
n
171
LEU
328
A
ASP
329
n
172
ASP
329
A
ILE
330
n
173
ILE
330
A
LEU
331
n
174
LEU
331
A
GLN
332
n
175
GLN
332
A
GLN
333
n
176
GLN
333
A
VAL
334
n
177
VAL
334
A
LYS
335
n
178
LYS
335
A
n
179
336
A
n
180
337
A
SER
338
n
181
SER
338
A
GLN
339
n
182
GLN
339
A
GLY
340
n
183
GLY
340
A
GLU
341
n
184
GLU
341
A
ALA
342
n
185
ALA
342
A
VAL
343
n
186
VAL
343
A
GLY
344
n
187
GLY
344
A
GLU
345
n
188
GLU
345
A
LEU
346
n
189
LEU
346
A
PRO
347
n
190
PRO
347
A
ARG
348
n
191
ARG
348
A
GLY
349
n
192
GLY
349
A
LYS
350
n
193
LYS
350
A
LEU
351
n
194
LEU
351
A
TYR
352
n
195
TYR
352
A
SER
353
n
196
SER
353
A
LEU
354
n
197
LEU
354
A
GLY
355
n
198
GLY
355
A
LYS
356
n
199
LYS
356
A
GLY
357
n
200
GLY
357
A
ARG
358
n
201
ARG
358
A
TRP
359
n
202
TRP
359
A
MET
360
n
203
MET
360
A
LEU
361
n
204
LEU
361
A
SER
362
n
205
SER
362
A
LEU
363
n
206
LEU
363
A
THR
364
n
207
THR
364
A
LYS
365
n
208
LYS
365
A
LYS
366
n
209
LYS
366
A
MET
367
n
210
MET
367
A
GLU
368
n
211
GLU
368
A
VAL
369
n
212
VAL
369
A
LYS
370
n
213
LYS
370
A
ALA
371
n
214
ALA
371
A
ILE
372
n
215
ILE
372
A
PHE
373
n
216
PHE
373
A
THR
374
n
217
THR
374
A
GLY
375
n
218
GLY
375
A
TYR
376
n
219
TYR
376
A
TYR
377
n
220
TYR
377
A
GLY
378
n
221
GLY
378
A
4.1765
1.3952
1.6370
3.6436
1.4667
2.2772
-0.1052
-0.2527
0.4000
-0.0220
0.0001
0.3423
-0.0589
-0.4353
0.0894
0.3002
0.0172
0.0784
0.3374
0.0446
0.2044
refined
75.3754
11.3868
19.2340
X-RAY DIFFRACTION
3.2368
1.6881
-1.1668
1.6846
1.2747
7.1401
-0.2352
0.4218
-0.6726
-0.2679
-0.1324
0.2752
1.4851
-0.7668
0.3458
0.6843
-0.2227
-0.0121
0.5449
0.0298
0.4672
refined
68.6825
-8.3659
9.0176
X-RAY DIFFRACTION
1.6672
0.7596
0.3584
2.1323
0.9493
3.6541
-0.1412
0.0133
0.0172
-0.0053
0.0355
-0.1603
-0.0058
0.2407
0.1116
0.2642
0.0536
0.0572
0.2311
0.0196
0.3022
refined
87.3281
12.5013
20.2301
X-RAY DIFFRACTION
4.8203
-4.4405
-3.8735
4.1930
3.6588
3.2016
-0.2311
0.1796
-0.8955
0.9367
-0.5224
0.1192
1.2909
0.5619
0.5531
0.7155
0.0558
0.0495
0.6898
0.0572
0.4661
refined
97.2046
5.1045
16.6778
X-RAY DIFFRACTION
2.4413
2.1954
0.5620
4.2196
-2.1381
4.1653
-0.0352
-0.3093
-0.4069
0.0360
-0.0718
-0.6611
0.2309
0.6381
0.1239
0.2775
0.0558
0.0603
0.2745
0.0133
0.3812
refined
85.1553
3.3163
15.9071
X-RAY DIFFRACTION
1.6474
0.8774
1.7897
2.5550
0.9154
2.6244
-0.1278
0.2651
-0.0758
-0.5434
0.1133
-0.0414
0.0608
0.0385
0.0092
0.4225
-0.0341
0.1469
0.3499
0.0335
0.3767
refined
80.0854
6.3765
8.4037
X-RAY DIFFRACTION
A
0
A
0
X-RAY DIFFRACTION
1
chain 'A' and (resid 164 through 194 )
A
0
A
0
X-RAY DIFFRACTION
2
chain 'A' and (resid 195 through 220 )
A
0
A
0
X-RAY DIFFRACTION
3
chain 'A' and (resid 221 through 288 )
A
0
A
0
X-RAY DIFFRACTION
4
chain 'A' and (resid 289 through 299 )
A
0
A
0
X-RAY DIFFRACTION
5
chain 'A' and (resid 300 through 319 )
A
0
A
0
X-RAY DIFFRACTION
6
chain 'A' and (resid 320 through 378 )
author_and_software_defined_assembly
PISA
1
monomeric
560
-26
11190
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
CYS
231
A
O
CYS
74
A
N
TRP
171
A
N
TRP
14
A
N
PHE
172
A
N
PHE
15
A
O
ILE
372
A
O
ILE
215
A
O
LEU
361
A
O
LEU
204
A
N
LEU
268
A
N
LEU
111
A
N
SER
264
A
N
SER
107
A
O
VAL
280
A
O
VAL
123
A
N
ALA
275
A
N
ALA
118
A
O
GLY
313
A
O
GLY
156
A
O
CYS
231
A
O
CYS
74
A
N
TRP
171
A
N
TRP
14
A
N
PHE
172
A
N
PHE
15
A
O
ILE
372
A
O
ILE
215
A
O
SER
362
A
O
SER
205
A
N
LYS
350
A
N
LYS
193
A
O
GLY
349
A
O
GLY
192
A
N
LEU
346
A
N
LEU
189
1
A
GLY
158
A
GLY
1
1
Y
1
A
GLY
159
A
GLY
2
1
Y
1
A
LEU
160
A
LEU
3
1
Y
1
A
GLU
161
A
GLU
4
1
Y
1
A
LYS
162
A
LYS
5
1
Y
1
A
ASP
163
A
ASP
6
1
Y
1
A
GLU
210
A
GLU
53
1
Y
1
A
PRO
211
A
PRO
54
1
Y
1
A
LYS
212
A
LYS
55
1
Y
1
A
GLY
336
A
GLY
179
1
Y
1
A
GLY
337
A
GLY
180
1
Y
1
A
SER
207
-93.84
49.84
1
A
THR
233
-103.38
-61.51
1
A
ASP
294
-66.55
85.23
176.340
46.5159
6.250
0.2649
0.1950
0.1983
2.5010
27.4370
359
6808
7167
5.0100
99.7200
0.4100
1
FREE R-VALUE
2.000
MOLECULAR REPLACEMENT
25.8800
0.9000
1.1100
2xmi
ML
FLAT BULK SOLVENT MODEL
2.5010
27.4370
68
1715
61.14
28.84
15
0
1632
210
0.002
1706
0.606
2298
0.024
248
0.003
292
12.198
640
0.3650
0.2707
2.8628
118
2236
2354
3
100.0000
0.2973
0.2070
3.6056
120
2279
2399
3
100.0000
0.2114
0.1602
27.4386
121
2293
2414
3
99.0000
30.570
0.228
2.500
30
4WBL
7167
-3.000
0.152
0.178
0.857
1
6.850
25813
3.6
99.700
0.930
0.769
2.500
2.570
1.850
1855
513
515
0.904
1
3.6
0
100.000
0.854
0.676
2.570
2.640
2.030
1837
505
504
0.793
1
0
99.800
0.738
0.575
2.640
2.710
2.370
1892
521
520
0.676
1
0
99.800
0.617
0.464
2.710
2.800
2.930
1751
475
476
0.545
1
0
100.000
0.517
0.411
2.800
2.890
3.270
1759
481
479
0.482
1
0
99.600
0.404
0.307
2.890
2.990
4.240
1647
445
446
0.359
1
0
100.000
0.365
0.284
2.990
3.100
4.660
1632
448
447
0.333
1
0
99.800
0.255
0.205
3.100
3.230
6.140
1541
421
421
0.240
1
0
100.000
0.162
0.158
3.230
3.370
7.300
1516
419
418
0.186
1
0
99.800
0.125
0.128
3.370
3.540
8.590
1345
365
364
0.150
1
0
99.700
0.124
0.118
3.540
3.730
9.280
1367
382
381
0.140
1
0
99.700
0.090
0.098
3.730
3.950
10.680
1268
351
350
0.115
1
0
99.700
0.075
0.081
3.950
4.230
11.600
1207
335
333
0.095
1
0
99.400
0.079
0.082
4.230
4.570
12.470
1075
305
304
0.096
1
0
99.700
0.078
0.088
4.570
5.000
12.620
1063
295
295
0.103
1
0
100.000
0.079
0.081
5.000
5.590
11.700
880
254
253
0.095
1
0
99.600
0.089
0.094
5.590
6.460
11.640
801
234
232
0.111
1
0
99.100
0.072
0.078
6.460
7.910
11.940
655
201
201
0.094
1
0
100.000
0.047
0.067
7.910
11.190
15.050
469
149
144
0.080
1
0
96.600
0.052
0.064
11.190
15.310
253
93
84
0.079
1
0
90.300
data reduction
XDS
refinement
PHENIX
(phenix.refine: 1.9_1692)
data extraction
PDB_EXTRACT
3.15
data scaling
XSCALE
model building
Coot
phasing
PHASER
Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation F235A
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
biological unit is the same as asym.
A
THR
174
A
THR
17
HELX_P
A
HIS
195
A
HIS
38
1
AA1
22
A
HIS
195
A
HIS
38
HELX_P
A
GLU
201
A
GLU
44
1
AA2
7
A
GLU
201
A
GLU
44
HELX_P
A
ILE
206
A
ILE
49
1
AA3
6
A
GLU
216
A
GLU
59
HELX_P
A
PHE
221
A
PHE
64
1
AA4
6
A
ASP
237
A
ASP
80
HELX_P
A
LYS
240
A
LYS
83
5
AA5
4
A
GLY
243
A
GLY
86
HELX_P
A
GLN
249
A
GLN
92
1
AA6
7
A
GLN
250
A
GLN
93
HELX_P
A
SER
256
A
SER
99
1
AA7
7
A
THR
282
A
THR
125
HELX_P
A
GLN
287
A
GLN
130
1
AA8
6
A
PRO
296
A
PRO
139
HELX_P
A
GLU
300
A
GLU
143
5
AA9
5
A
VAL
321
A
VAL
164
HELX_P
A
LYS
335
A
LYS
178
1
AB1
15
HYDROLASE
hydrolase, myelin, nervous system
CN37_MOUSE
UNP
1
179
P16330
GLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSYFGKRPPGVLHCTTKFCDY
GKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQVVLTDQELQLWPSDLDKPSASEGLPPGSRAHVTLGCAADV
QPVQTGLDLLDILQQVKGGSQGEAVGELPRGKLYSLGKGRWMLSLTKKMEVKAIFTGYYG
179
398
4WBL
159
378
P16330
A
1
2
221
1
expression tag
GLY
158
4WBL
A
P16330
UNP
1
1
PHE
engineered mutation
ALA
235
4WBL
A
P16330
UNP
255
78
6
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
230
A
HIS
73
A
ALA
235
A
ALA
78
A
TYR
168
A
TYR
11
A
LEU
173
A
LEU
16
A
ARG
358
A
ARG
201
A
TYR
376
A
TYR
219
A
LYS
259
A
LYS
102
A
VAL
270
A
VAL
113
A
THR
274
A
THR
117
A
VAL
280
A
VAL
123
A
HIS
309
A
HIS
152
A
CYS
314
A
CYS
157
A
HIS
230
A
HIS
73
A
ALA
235
A
ALA
78
A
TYR
168
A
TYR
11
A
LEU
173
A
LEU
16
A
ARG
358
A
ARG
201
A
TYR
376
A
TYR
219
A
GLY
349
A
GLY
192
A
GLY
355
A
GLY
198
A
GLY
344
A
GLY
187
A
LEU
346
A
LEU
189
binding site for residue CL A 401
A
CL
401
Software
3
binding site for residue CL A 402
A
CL
402
Software
3
binding site for residue GOL A 403
A
GOL
403
Software
3
A
GLY
305
A
GLY
148
3
1_555
A
SER
306
A
SER
149
3
1_555
A
ARG
307
A
ARG
150
3
1_555
A
SER
178
A
SER
21
3
1_555
A
GLU
179
A
GLU
22
3
1_555
A
ARG
182
A
ARG
25
3
1_555
A
HIS
230
A
HIS
73
3
1_555
A
THR
232
A
THR
75
3
1_555
A
HOH
568
E
HOH
3
1_555
4
P 1 21 1