0.025439 0.000000 0.002009 0.000000 0.020691 0.000000 0.000000 0.000000 0.018566 0.000000 0.000000 0.000000 Myllykoski, M. Raasakka, A. Kursula, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.000 94.520 90.000 39.310 48.330 54.030 C2 H4 O2 60.052 ACETIC ACID non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O N 3 N O N 4 N C N 5 N H N 6 N H N 7 N H N 8 N H N 9 N N N 10 S C N 11 N C N 12 N O N 13 N C N 14 N O N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N N N 23 S C N 24 N C N 25 N O N 26 N C N 27 N C N 28 N C N 29 N N N 30 N C N 31 N N N 32 N N N 33 N O N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N N N 50 S C N 51 N C N 52 N O N 53 N C N 54 N C N 55 N O N 56 N N N 57 N O N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N N N 67 S C N 68 N C N 69 N O N 70 N C N 71 N C N 72 N O N 73 N O N 74 N O N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N CL N 83 N N N 84 R C N 85 N C N 86 N O N 87 N C N 88 N S N 89 N O N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N N N 98 S C N 99 N C N 100 N O N 101 N C N 102 N C N 103 N C N 104 N O N 105 N N N 106 N O N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N N N 118 S C N 119 N C N 120 N O N 121 N C N 122 N C N 123 N C N 124 N O N 125 N O N 126 N O N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 N C N 138 N C N 139 N O N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 S C N 148 N C N 149 N O N 150 N C Y 151 N C Y 152 N N Y 153 N C Y 154 N C Y 155 N N N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N O N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 S C N 175 N C N 176 N C N 177 N C N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 N C N 197 N C N 198 N C N 199 N C N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N N N 215 S C N 216 N C N 217 N O N 218 N C N 219 N C N 220 N C N 221 N C N 222 N N N 223 N O N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N N N 240 S C N 241 N C N 242 N O N 243 N C N 244 N C N 245 N S N 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C Y 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C N 270 N O N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N N N 283 S C N 284 N C N 285 N O N 286 N C N 287 N C N 288 N C N 289 N O N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N N N 300 S C N 301 N C N 302 N O N 303 N C N 304 N O N 305 N O N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N N N 314 S C N 315 N C N 316 N O N 317 R C N 318 N O N 319 N C N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N N N 331 S C N 332 N C N 333 N O N 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N N Y 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C N 368 N O N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N N N 382 S C N 383 N C N 384 N O N 385 N C N 386 N C N 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N doub N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N doub N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing Y 147 N sing Y 148 N doub Y 149 N doub N 150 N sing Y 151 N sing N 152 N sing Y 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing Y 255 N doub Y 256 N sing Y 257 N sing N 258 N sing Y 259 N doub N 260 N sing Y 261 N doub N 262 N sing Y 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing Y 324 N doub Y 325 N sing Y 326 N sing N 327 N sing Y 328 N doub Y 329 N sing Y 330 N sing N 331 N sing Y 332 N sing Y 333 N doub N 334 N sing Y 335 N doub N 336 N sing Y 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing Y 352 N doub Y 353 N sing Y 354 N sing N 355 N sing Y 356 N doub N 357 N sing Y 358 N doub N 359 N sing Y 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing UK Sci Rep 2045-2322 5 16520 16520 10.1038/srep16520 26563764 Determinants of ligand binding and catalytic activity in the myelin enzyme 2',3'-cyclic nucleotide 3'-phosphodiesterase. 2015 10.2210/pdb4wdh/pdb pdb_00004wdh 100 1 CCD 2012-05-18 RAYONIX MX-225 SINGLE WAVELENGTH M x-ray 1 1.223 1.0 P14 (MX2) PETRA III, EMBL c/o DESY 1.223 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) 24201.830 2',3'-cyclic-nucleotide 3'-phosphodiesterase 3.1.4.37 catalytic domain, residues 179-398 Y168A 1 man polymer 60.052 ACETIC ACID 1 syn non-polymer 35.453 CHLORIDE ION 2 syn non-polymer 18.015 water 153 nat water CNPase no no GGLEKDFLPLAFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSYFGKRPPGVLHCTTKFCD YGKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQVVLTDQELQLWPSDLDKPSASEGLPPGSRAHVTLGCAAD VQPVQTGLDLLDILQQVKGGSQGEAVGELPRGKLYSLGKGRWMLSLTKKMEVKAIFTGYYG GGLEKDFLPLAFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSYFGKRPPGVLHCTTKFCD YGKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQVVLTDQELQLWPSDLDKPSASEGLPPGSRAHVTLGCAAD VQPVQTGLDLLDILQQVKGGSQGEAVGELPRGKLYSLGKGRWMLSLTKKMEVKAIFTGYYG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Mouse sample 1 221 Cnp, Cnp1 10090 Mus musculus 469008 Escherichia coli BL21(DE3) Rosetta plasmid Biological sequence pTH27 1 2.11 41.60 VAPOR DIFFUSION, SITTING DROP Na-acetate, PEG 4000 / 6000 298 diffrn_source chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Data collection Data collection Database references Refinement description 1 0 2015-09-30 1 1 2018-03-07 1 2 2024-01-10 _diffrn_source.pdbx_synchrotron_site _database_2.pdbx_DOI _database_2.pdbx_database_accession N RCSB Y PDBE 2014-09-08 REL REL ACY ACETIC ACID CL CHLORIDE ION HOH water 2XMI PDB experimental model ACY 1 2 ACY ACY 401 A CL 1 3 CL CL 402 A CL 2 3 CL CL 403 A HOH 89 4 HOH HOH 501 A HOH 77 4 HOH HOH 502 A HOH 21 4 HOH HOH 503 A HOH 113 4 HOH HOH 504 A HOH 153 4 HOH HOH 505 A HOH 16 4 HOH HOH 506 A HOH 1 4 HOH HOH 507 A HOH 137 4 HOH HOH 508 A HOH 20 4 HOH HOH 509 A HOH 31 4 HOH HOH 510 A HOH 12 4 HOH HOH 511 A HOH 43 4 HOH HOH 512 A HOH 118 4 HOH HOH 513 A HOH 117 4 HOH HOH 514 A HOH 28 4 HOH HOH 515 A HOH 27 4 HOH HOH 516 A HOH 84 4 HOH HOH 517 A HOH 122 4 HOH HOH 518 A HOH 23 4 HOH HOH 519 A HOH 5 4 HOH HOH 520 A HOH 100 4 HOH HOH 521 A HOH 51 4 HOH HOH 522 A HOH 52 4 HOH HOH 523 A HOH 49 4 HOH HOH 524 A HOH 44 4 HOH HOH 525 A HOH 121 4 HOH HOH 526 A HOH 41 4 HOH HOH 527 A HOH 146 4 HOH HOH 528 A HOH 106 4 HOH HOH 529 A HOH 107 4 HOH HOH 530 A HOH 115 4 HOH HOH 531 A HOH 34 4 HOH HOH 532 A HOH 33 4 HOH HOH 533 A HOH 22 4 HOH HOH 534 A HOH 36 4 HOH HOH 535 A HOH 128 4 HOH HOH 536 A HOH 55 4 HOH HOH 537 A HOH 142 4 HOH HOH 538 A HOH 35 4 HOH HOH 539 A HOH 91 4 HOH HOH 540 A HOH 38 4 HOH HOH 541 A HOH 50 4 HOH HOH 542 A HOH 90 4 HOH HOH 543 A HOH 45 4 HOH HOH 544 A HOH 119 4 HOH HOH 545 A HOH 92 4 HOH HOH 546 A HOH 126 4 HOH HOH 547 A HOH 108 4 HOH HOH 548 A HOH 60 4 HOH HOH 549 A HOH 97 4 HOH HOH 550 A HOH 68 4 HOH HOH 551 A HOH 154 4 HOH HOH 552 A HOH 136 4 HOH HOH 553 A HOH 129 4 HOH HOH 554 A HOH 139 4 HOH HOH 555 A HOH 42 4 HOH HOH 556 A HOH 63 4 HOH HOH 557 A HOH 53 4 HOH HOH 558 A HOH 87 4 HOH HOH 559 A HOH 37 4 HOH HOH 560 A HOH 144 4 HOH HOH 561 A HOH 147 4 HOH HOH 562 A HOH 83 4 HOH HOH 563 A HOH 65 4 HOH HOH 564 A HOH 135 4 HOH HOH 565 A HOH 125 4 HOH HOH 566 A HOH 123 4 HOH HOH 567 A HOH 143 4 HOH HOH 568 A HOH 130 4 HOH HOH 569 A HOH 2 4 HOH HOH 570 A HOH 3 4 HOH HOH 571 A HOH 4 4 HOH HOH 572 A HOH 6 4 HOH HOH 573 A HOH 7 4 HOH HOH 574 A HOH 8 4 HOH HOH 575 A HOH 9 4 HOH HOH 576 A HOH 10 4 HOH HOH 577 A HOH 11 4 HOH HOH 578 A HOH 13 4 HOH HOH 579 A HOH 14 4 HOH HOH 580 A HOH 15 4 HOH HOH 581 A HOH 17 4 HOH HOH 582 A HOH 18 4 HOH HOH 583 A HOH 19 4 HOH HOH 584 A HOH 24 4 HOH HOH 585 A HOH 25 4 HOH HOH 586 A HOH 26 4 HOH HOH 587 A HOH 29 4 HOH HOH 588 A HOH 30 4 HOH HOH 589 A HOH 32 4 HOH HOH 590 A HOH 39 4 HOH HOH 591 A HOH 40 4 HOH HOH 592 A HOH 46 4 HOH HOH 593 A HOH 47 4 HOH HOH 594 A HOH 48 4 HOH HOH 595 A HOH 54 4 HOH HOH 596 A HOH 56 4 HOH HOH 597 A HOH 57 4 HOH HOH 598 A HOH 58 4 HOH HOH 599 A HOH 59 4 HOH HOH 600 A HOH 61 4 HOH HOH 601 A HOH 62 4 HOH HOH 602 A HOH 64 4 HOH HOH 603 A HOH 66 4 HOH HOH 604 A HOH 67 4 HOH HOH 605 A HOH 69 4 HOH HOH 606 A HOH 70 4 HOH HOH 607 A HOH 71 4 HOH HOH 608 A HOH 72 4 HOH HOH 609 A HOH 73 4 HOH HOH 610 A HOH 75 4 HOH HOH 611 A HOH 76 4 HOH HOH 612 A HOH 78 4 HOH HOH 613 A HOH 79 4 HOH HOH 614 A HOH 80 4 HOH HOH 615 A HOH 81 4 HOH HOH 616 A HOH 82 4 HOH HOH 617 A HOH 85 4 HOH HOH 618 A HOH 86 4 HOH HOH 619 A HOH 88 4 HOH HOH 620 A HOH 93 4 HOH HOH 621 A HOH 94 4 HOH HOH 622 A HOH 95 4 HOH HOH 623 A HOH 96 4 HOH HOH 624 A HOH 98 4 HOH HOH 625 A HOH 99 4 HOH HOH 626 A HOH 101 4 HOH HOH 627 A HOH 102 4 HOH HOH 628 A HOH 103 4 HOH HOH 629 A HOH 104 4 HOH HOH 630 A HOH 105 4 HOH HOH 631 A HOH 109 4 HOH HOH 632 A HOH 110 4 HOH HOH 633 A HOH 111 4 HOH HOH 634 A HOH 112 4 HOH HOH 635 A HOH 114 4 HOH HOH 636 A HOH 116 4 HOH HOH 637 A HOH 120 4 HOH HOH 638 A HOH 124 4 HOH HOH 639 A HOH 127 4 HOH HOH 640 A HOH 131 4 HOH HOH 641 A HOH 132 4 HOH HOH 642 A HOH 133 4 HOH HOH 643 A HOH 134 4 HOH HOH 644 A HOH 138 4 HOH HOH 645 A HOH 140 4 HOH HOH 646 A HOH 141 4 HOH HOH 647 A HOH 145 4 HOH HOH 648 A HOH 148 4 HOH HOH 649 A HOH 149 4 HOH HOH 650 A HOH 150 4 HOH HOH 651 A HOH 151 4 HOH HOH 652 A HOH 152 4 HOH HOH 653 A n 1 158 A n 2 159 A n 3 160 A n 4 161 A LYS 162 n 5 LYS 162 A ASP 163 n 6 ASP 163 A PHE 164 n 7 PHE 164 A LEU 165 n 8 LEU 165 A PRO 166 n 9 PRO 166 A LEU 167 n 10 LEU 167 A ALA 168 n 11 ALA 168 A PHE 169 n 12 PHE 169 A GLY 170 n 13 GLY 170 A TRP 171 n 14 TRP 171 A PHE 172 n 15 PHE 172 A LEU 173 n 16 LEU 173 A THR 174 n 17 THR 174 A LYS 175 n 18 LYS 175 A LYS 176 n 19 LYS 176 A SER 177 n 20 SER 177 A SER 178 n 21 SER 178 A GLU 179 n 22 GLU 179 A THR 180 n 23 THR 180 A LEU 181 n 24 LEU 181 A ARG 182 n 25 ARG 182 A LYS 183 n 26 LYS 183 A ALA 184 n 27 ALA 184 A GLY 185 n 28 GLY 185 A GLN 186 n 29 GLN 186 A VAL 187 n 30 VAL 187 A PHE 188 n 31 PHE 188 A LEU 189 n 32 LEU 189 A GLU 190 n 33 GLU 190 A GLU 191 n 34 GLU 191 A LEU 192 n 35 LEU 192 A GLY 193 n 36 GLY 193 A ASN 194 n 37 ASN 194 A HIS 195 n 38 HIS 195 A LYS 196 n 39 LYS 196 A ALA 197 n 40 ALA 197 A PHE 198 n 41 PHE 198 A LYS 199 n 42 LYS 199 A LYS 200 n 43 LYS 200 A GLU 201 n 44 GLU 201 A LEU 202 n 45 LEU 202 A ARG 203 n 46 ARG 203 A HIS 204 n 47 HIS 204 A PHE 205 n 48 PHE 205 A ILE 206 n 49 ILE 206 A SER 207 n 50 SER 207 A GLY 208 n 51 GLY 208 A ASP 209 n 52 ASP 209 A GLU 210 n 53 GLU 210 A PRO 211 n 54 PRO 211 A LYS 212 n 55 LYS 212 A GLU 213 n 56 GLU 213 A LYS 214 n 57 LYS 214 A LEU 215 n 58 LEU 215 A GLU 216 n 59 GLU 216 A LEU 217 n 60 LEU 217 A VAL 218 n 61 VAL 218 A SER 219 n 62 SER 219 A TYR 220 n 63 TYR 220 A PHE 221 n 64 PHE 221 A GLY 222 n 65 GLY 222 A LYS 223 n 66 LYS 223 A ARG 224 n 67 ARG 224 A PRO 225 n 68 PRO 225 A PRO 226 n 69 PRO 226 A GLY 227 n 70 GLY 227 A VAL 228 n 71 VAL 228 A LEU 229 n 72 LEU 229 A HIS 230 n 73 HIS 230 A CYS 231 n 74 CYS 231 A THR 232 n 75 THR 232 A THR 233 n 76 THR 233 A LYS 234 n 77 LYS 234 A PHE 235 n 78 PHE 235 A CYS 236 n 79 CYS 236 A ASP 237 n 80 ASP 237 A TYR 238 n 81 TYR 238 A GLY 239 n 82 GLY 239 A LYS 240 n 83 LYS 240 A ALA 241 n 84 ALA 241 A ALA 242 n 85 ALA 242 A GLY 243 n 86 GLY 243 A ALA 244 n 87 ALA 244 A GLU 245 n 88 GLU 245 A GLU 246 n 89 GLU 246 A TYR 247 n 90 TYR 247 A ALA 248 n 91 ALA 248 A GLN 249 n 92 GLN 249 A GLN 250 n 93 GLN 250 A GLU 251 n 94 GLU 251 A VAL 252 n 95 VAL 252 A VAL 253 n 96 VAL 253 A LYS 254 n 97 LYS 254 A ARG 255 n 98 ARG 255 A SER 256 n 99 SER 256 A TYR 257 n 100 TYR 257 A GLY 258 n 101 GLY 258 A LYS 259 n 102 LYS 259 A ALA 260 n 103 ALA 260 A PHE 261 n 104 PHE 261 A LYS 262 n 105 LYS 262 A LEU 263 n 106 LEU 263 A SER 264 n 107 SER 264 A ILE 265 n 108 ILE 265 A SER 266 n 109 SER 266 A ALA 267 n 110 ALA 267 A LEU 268 n 111 LEU 268 A PHE 269 n 112 PHE 269 A VAL 270 n 113 VAL 270 A THR 271 n 114 THR 271 A PRO 272 n 115 PRO 272 A LYS 273 n 116 LYS 273 A THR 274 n 117 THR 274 A ALA 275 n 118 ALA 275 A GLY 276 n 119 GLY 276 A ALA 277 n 120 ALA 277 A GLN 278 n 121 GLN 278 A VAL 279 n 122 VAL 279 A VAL 280 n 123 VAL 280 A LEU 281 n 124 LEU 281 A THR 282 n 125 THR 282 A ASP 283 n 126 ASP 283 A GLN 284 n 127 GLN 284 A GLU 285 n 128 GLU 285 A LEU 286 n 129 LEU 286 A GLN 287 n 130 GLN 287 A LEU 288 n 131 LEU 288 A TRP 289 n 132 TRP 289 A PRO 290 n 133 PRO 290 A SER 291 n 134 SER 291 A ASP 292 n 135 ASP 292 A LEU 293 n 136 LEU 293 A ASP 294 n 137 ASP 294 A LYS 295 n 138 LYS 295 A PRO 296 n 139 PRO 296 A SER 297 n 140 SER 297 A ALA 298 n 141 ALA 298 A SER 299 n 142 SER 299 A GLU 300 n 143 GLU 300 A GLY 301 n 144 GLY 301 A LEU 302 n 145 LEU 302 A PRO 303 n 146 PRO 303 A PRO 304 n 147 PRO 304 A GLY 305 n 148 GLY 305 A SER 306 n 149 SER 306 A ARG 307 n 150 ARG 307 A ALA 308 n 151 ALA 308 A HIS 309 n 152 HIS 309 A VAL 310 n 153 VAL 310 A THR 311 n 154 THR 311 A LEU 312 n 155 LEU 312 A GLY 313 n 156 GLY 313 A CYS 314 n 157 CYS 314 A ALA 315 n 158 ALA 315 A ALA 316 n 159 ALA 316 A ASP 317 n 160 ASP 317 A VAL 318 n 161 VAL 318 A GLN 319 n 162 GLN 319 A PRO 320 n 163 PRO 320 A VAL 321 n 164 VAL 321 A GLN 322 n 165 GLN 322 A THR 323 n 166 THR 323 A GLY 324 n 167 GLY 324 A LEU 325 n 168 LEU 325 A ASP 326 n 169 ASP 326 A LEU 327 n 170 LEU 327 A LEU 328 n 171 LEU 328 A ASP 329 n 172 ASP 329 A ILE 330 n 173 ILE 330 A LEU 331 n 174 LEU 331 A GLN 332 n 175 GLN 332 A GLN 333 n 176 GLN 333 A VAL 334 n 177 VAL 334 A LYS 335 n 178 LYS 335 A n 179 336 A n 180 337 A n 181 338 A n 182 339 A GLY 340 n 183 GLY 340 A GLU 341 n 184 GLU 341 A ALA 342 n 185 ALA 342 A VAL 343 n 186 VAL 343 A GLY 344 n 187 GLY 344 A GLU 345 n 188 GLU 345 A LEU 346 n 189 LEU 346 A PRO 347 n 190 PRO 347 A ARG 348 n 191 ARG 348 A GLY 349 n 192 GLY 349 A LYS 350 n 193 LYS 350 A LEU 351 n 194 LEU 351 A TYR 352 n 195 TYR 352 A SER 353 n 196 SER 353 A LEU 354 n 197 LEU 354 A GLY 355 n 198 GLY 355 A LYS 356 n 199 LYS 356 A GLY 357 n 200 GLY 357 A ARG 358 n 201 ARG 358 A TRP 359 n 202 TRP 359 A MET 360 n 203 MET 360 A LEU 361 n 204 LEU 361 A SER 362 n 205 SER 362 A LEU 363 n 206 LEU 363 A THR 364 n 207 THR 364 A LYS 365 n 208 LYS 365 A LYS 366 n 209 LYS 366 A MET 367 n 210 MET 367 A GLU 368 n 211 GLU 368 A VAL 369 n 212 VAL 369 A LYS 370 n 213 LYS 370 A ALA 371 n 214 ALA 371 A ILE 372 n 215 ILE 372 A PHE 373 n 216 PHE 373 A THR 374 n 217 THR 374 A GLY 375 n 218 GLY 375 A TYR 376 n 219 TYR 376 A TYR 377 n 220 TYR 377 A GLY 378 n 221 GLY 378 A 3.8083 1.8273 1.5865 4.2251 1.4074 2.6027 0.0685 -0.2311 0.2259 -0.1732 -0.1192 0.2964 0.2928 -0.4201 0.1465 0.1913 -0.0131 -0.0144 0.1802 0.0067 0.1650 refined 35.1656 12.1564 20.3027 X-RAY DIFFRACTION 6.5148 -2.8546 2.2983 3.4403 2.1823 5.7021 -0.1911 0.2459 -1.3019 -0.5704 0.3742 1.0075 1.4481 -0.9832 0.5702 1.1709 -0.2958 -0.0519 0.3568 -0.1170 0.4954 refined 27.1043 -9.8913 8.0702 X-RAY DIFFRACTION 1.1550 0.9547 -0.0052 3.0999 0.0680 2.1645 -0.1742 -0.0724 0.0236 -0.0182 0.0329 -0.3479 0.0526 0.1009 0.1405 0.1524 0.0126 0.0139 0.1615 -0.0103 0.2297 refined 46.7501 11.6495 24.7918 X-RAY DIFFRACTION 5.8402 5.7992 3.2487 6.5218 2.2611 5.5104 -0.4210 0.1156 0.0592 -1.3624 0.2398 -0.4729 0.0532 0.0520 0.2497 0.2915 -0.0195 0.0560 0.1701 -0.0135 0.2309 refined 39.4821 13.9501 11.8522 X-RAY DIFFRACTION 5.7642 4.4489 1.4085 3.3382 1.2267 1.9030 -0.1730 0.3490 -0.4365 -0.2167 0.3464 -0.6286 -0.0414 0.3560 -0.1345 0.2801 -0.0313 0.0770 0.2605 -0.0277 0.2925 refined 49.3064 9.2682 14.1847 X-RAY DIFFRACTION 2.7414 1.5695 -0.3784 2.8055 -0.4815 2.7819 -0.1202 0.1853 -0.4628 -0.7166 0.0265 -0.3198 0.2074 0.2250 0.0012 0.4117 -0.0358 0.0670 0.2245 -0.0609 0.2703 refined 41.9751 2.6797 10.1561 X-RAY DIFFRACTION 2.1302 1.4014 0.7275 3.6066 1.8048 4.3617 -0.3434 0.3768 0.0453 -0.5393 0.2812 0.0110 0.3310 -0.0278 0.1291 0.3209 -0.0488 0.0657 0.2345 0.0094 0.2115 refined 37.9962 9.3777 11.0350 X-RAY DIFFRACTION A 0 A 0 X-RAY DIFFRACTION 1 chain 'A' and (resid 163 through 193 ) A 0 A 0 X-RAY DIFFRACTION 2 chain 'A' and (resid 194 through 216 ) A 0 A 0 X-RAY DIFFRACTION 3 chain 'A' and (resid 217 through 259 ) A 0 A 0 X-RAY DIFFRACTION 4 chain 'A' and (resid 260 through 270 ) A 0 A 0 X-RAY DIFFRACTION 5 chain 'A' and (resid 271 through 299 ) A 0 A 0 X-RAY DIFFRACTION 6 chain 'A' and (resid 300 through 348 ) A 0 A 0 X-RAY DIFFRACTION 7 chain 'A' and (resid 349 through 378 ) author_and_software_defined_assembly PISA 1 monomeric 240 -16 11540 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O CYS 231 A O CYS 74 A N TRP 171 A N TRP 14 A N ALA 168 A N ALA 11 A O TYR 376 A O TYR 219 A O MET 367 A O MET 210 A N ILE 265 A N ILE 108 A N SER 264 A N SER 107 A O VAL 280 A O VAL 123 A N ALA 275 A N ALA 118 A O LEU 312 A O LEU 155 A O CYS 231 A O CYS 74 A N TRP 171 A N TRP 14 A N ALA 168 A N ALA 11 A O TYR 376 A O TYR 219 A O MET 360 A O MET 203 A N TYR 352 A N TYR 195 A O GLY 349 A O GLY 192 A N LEU 346 A N LEU 189 1 A GLY 158 A GLY 1 1 Y 1 A GLY 159 A GLY 2 1 Y 1 A LEU 160 A LEU 3 1 Y 1 A GLU 161 A GLU 4 1 Y 1 A GLY 336 A GLY 179 1 Y 1 A GLY 337 A GLY 180 1 Y 1 A SER 338 A SER 181 1 Y 1 A GLN 339 A GLN 182 1 Y 1 A SER 207 -97.53 -77.87 1 A ASP 209 95.03 -13.18 1 A GLU 213 -73.84 -169.81 1 A THR 233 -100.41 -60.22 156.250 43.8576 13.570 0.2592 0.2168 0.2189 1.9000 53.8620 748 14204 14952 5.0000 93.0100 0.2800 1 FREE R-VALUE 2.000 MOLECULAR REPLACEMENT 30.7200 0.9000 1.1100 2xmi ML FLAT BULK SOLVENT MODEL 1.9000 53.8620 153 1820 44.14 37.43 9 0 1658 213 0.003 1720 0.714 2318 0.027 250 0.004 297 14.376 645 0.3780 0.3191 2.0470 130 2460 2590 5 82.0000 0.3205 0.2696 2.2530 144 2743 2887 5 90.0000 0.3072 0.2591 2.5790 153 2895 3048 5 95.0000 0.2873 0.2335 3.2492 158 3007 3165 5 99.0000 0.2008 0.1692 53.8840 163 3099 3262 5 99.0000 23.650 0.150 1.900 60 4WDH 14974 -3.000 0.069 0.083 0.982 1 9.490 42879 2.9 93.000 1.306 0.722 1.900 1.950 1.270 1555 1175 850 0.927 1 1.8 0 72.300 0.975 0.580 1.950 2.000 1.690 2203 1171 1005 0.723 1 0 85.800 0.750 0.470 2.000 2.060 2.220 2346 1116 996 0.581 1 0 89.200 0.459 0.332 2.060 2.120 3.120 2295 1069 959 0.409 1 0 89.700 0.396 0.268 2.120 2.190 3.670 2396 1069 965 0.330 1 0 90.300 0.348 0.230 2.190 2.270 4.450 2378 1004 921 0.284 1 0 91.700 0.334 0.200 2.270 2.360 4.830 2432 997 925 0.247 1 0 92.800 0.279 0.174 2.360 2.450 5.590 2478 951 907 0.213 1 0 95.400 0.257 0.164 2.450 2.560 6.330 2504 904 874 0.200 1 0 96.700 0.211 0.130 2.560 2.690 7.880 2539 885 859 0.158 1 0 97.100 0.151 0.102 2.690 2.830 9.620 2543 836 820 0.123 1 0 98.100 0.114 0.089 2.830 3.000 11.650 2524 781 776 0.107 1 0 99.400 0.073 0.070 3.000 3.210 15.090 2531 739 738 0.083 1 0 99.900 0.045 0.055 3.210 3.470 19.860 2444 689 683 0.065 1 0 99.100 0.041 0.050 3.470 3.800 21.550 2283 633 630 0.059 1 0 99.500 0.038 0.051 3.800 4.250 23.740 2114 581 579 0.060 1 0 99.700 0.035 0.049 4.250 4.910 23.780 1843 518 516 0.057 1 0 99.600 0.032 0.043 4.910 6.010 23.380 1561 434 431 0.050 1 0 99.300 0.029 0.037 6.010 8.500 24.050 1225 342 340 0.043 1 0 99.400 0.024 0.034 8.500 25.690 685 202 200 0.040 1 0 99.000 data reduction XDS model building Coot refinement PHENIX (phenix.refine: 1.9_1692) data extraction PDB_EXTRACT 3.15 data scaling XSCALE phasing PHASER Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation Y168A 1 N N 2 N N 3 N N 3 N N 4 N N biological unit is the same as asym. A THR 174 A THR 17 HELX_P A ASN 194 A ASN 37 1 AA1 21 A HIS 195 A HIS 38 HELX_P A LYS 200 A LYS 43 1 AA2 6 A GLU 201 A GLU 44 HELX_P A ILE 206 A ILE 49 1 AA3 6 A GLU 216 A GLU 59 HELX_P A PHE 221 A PHE 64 1 AA4 6 A ASP 237 A ASP 80 HELX_P A LYS 240 A LYS 83 5 AA5 4 A GLY 243 A GLY 86 HELX_P A GLN 249 A GLN 92 1 AA6 7 A GLN 250 A GLN 93 HELX_P A TYR 257 A TYR 100 1 AA7 8 A THR 282 A THR 125 HELX_P A GLN 287 A GLN 130 1 AA8 6 A PRO 296 A PRO 139 HELX_P A GLY 301 A GLY 144 5 AA9 6 A VAL 321 A VAL 164 HELX_P A VAL 334 A VAL 177 1 AB1 14 HYDROLASE hydrolase, myelin, nervous system CN37_MOUSE UNP 1 179 P16330 GLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSYFGKRPPGVLHCTTKFCDY GKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQVVLTDQELQLWPSDLDKPSASEGLPPGSRAHVTLGCAADV QPVQTGLDLLDILQQVKGGSQGEAVGELPRGKLYSLGKGRWMLSLTKKMEVKAIFTGYYG 179 398 4WDH 159 378 P16330 A 1 2 221 1 expression tag GLY 158 4WDH A P16330 UNP 1 1 TYR engineered mutation ALA 168 4WDH A P16330 UNP 188 11 6 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A HIS 230 A HIS 73 A PHE 235 A PHE 78 A ALA 168 A ALA 11 A LEU 173 A LEU 16 A ARG 358 A ARG 201 A TYR 376 A TYR 219 A ALA 260 A ALA 103 A VAL 270 A VAL 113 A THR 274 A THR 117 A VAL 280 A VAL 123 A HIS 309 A HIS 152 A CYS 314 A CYS 157 A HIS 230 A HIS 73 A PHE 235 A PHE 78 A ALA 168 A ALA 11 A LEU 173 A LEU 16 A ARG 358 A ARG 201 A TYR 376 A TYR 219 A GLY 349 A GLY 192 A GLY 355 A GLY 198 A GLY 344 A GLY 187 A LEU 346 A LEU 189 binding site for residue ACY A 401 A ACY 401 Software 7 binding site for residue CL A 402 A CL 402 Software 2 binding site for residue CL A 403 A CL 403 Software 2 A TRP 289 A TRP 132 7 1_555 A LEU 293 A LEU 136 7 1_555 A PRO 296 A PRO 139 7 1_555 A SER 297 A SER 140 7 1_555 A GLY 305 A GLY 148 7 1_555 A SER 306 A SER 149 7 1_555 A ARG 307 A ARG 150 7 1_555 A ALA 260 A ALA 103 2 1_555 A HOH 561 E HOH 2 1_555 A SER 178 A SER 21 2 1_555 A ARG 182 A ARG 25 2 1_555 4 P 1 21 1