0.017313
0.000000
0.000000
0.000000
0.017313
0.000000
0.000000
0.000000
0.007269
0.000000
0.000000
0.000000
Bang, J.K.
Han, Y.H.
Ahn, M.J.
Lee, K.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
57.760
57.760
137.568
C20 H29 N3 O2
343.463
n
3-(8-phenyloctyl)-L-histidine
L-peptide linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C11 H13 N O3
207.226
4-(benzoylamino)butanoic acid
peptide-like
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C4 H10 N O6 P
199.099
n
PHOSPHOTHREONINE
PHOSPHONOTHREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
N
N
3
N
O
N
4
S
C
N
5
N
C
Y
6
N
C
N
7
N
C
N
8
N
C
N
9
N
C
N
10
N
C
N
11
N
C
N
12
N
C
N
13
N
C
N
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
N
Y
22
N
C
Y
23
N
C
Y
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
N
N
56
S
C
N
57
N
C
N
58
N
O
N
59
N
C
N
60
N
O
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
N
N
69
S
C
N
70
N
C
N
71
N
O
N
72
N
C
N
73
N
C
N
74
N
C
N
75
N
N
N
76
N
C
N
77
N
N
N
78
N
N
N
79
N
O
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
N
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
R
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
S
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
N
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
O
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
N
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
Y
196
N
C
Y
197
N
N
Y
198
N
C
Y
199
N
C
Y
200
N
N
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
S
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
N
N
243
N
C
N
244
N
O
Y
245
N
C
Y
246
N
C
Y
247
N
C
Y
248
N
C
Y
249
N
C
Y
250
N
C
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
O
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
N
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
S
N
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
R
C
N
394
N
O
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
R
C
N
409
N
C
N
410
N
O
N
411
N
P
N
412
N
O
N
413
N
O
N
414
N
O
N
415
N
C
N
416
N
O
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
N
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
N
N
456
S
C
N
457
N
C
N
458
N
O
N
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
Y
465
N
C
N
466
N
O
N
467
N
O
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
N
N
480
S
C
N
481
N
C
N
482
N
O
N
483
N
C
N
484
N
C
N
485
N
C
N
486
N
O
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
Y
12
N
doub
Y
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
Y
39
N
doub
Y
40
N
sing
Y
41
N
doub
N
42
N
sing
Y
43
N
sing
N
44
N
sing
Y
45
N
doub
N
46
N
sing
Y
47
N
sing
N
48
N
sing
N
49
N
sing
Y
50
N
sing
Y
51
N
sing
N
52
N
sing
Y
53
N
doub
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
doub
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
Y
195
N
sing
Y
196
N
doub
Y
197
N
doub
N
198
N
sing
Y
199
N
sing
N
200
N
sing
Y
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
Y
236
N
doub
Y
237
N
sing
Y
238
N
doub
Y
239
N
sing
Y
240
N
doub
Y
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
Y
333
N
doub
Y
334
N
sing
Y
335
N
sing
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
Y
423
N
doub
Y
424
N
sing
Y
425
N
sing
N
426
N
sing
Y
427
N
doub
Y
428
N
sing
Y
429
N
sing
N
430
N
sing
Y
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
Y
451
N
doub
Y
452
N
sing
Y
453
N
sing
N
454
N
sing
Y
455
N
doub
N
456
N
sing
Y
457
N
doub
N
458
N
sing
Y
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
doub
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
58
294
304
10.1021/jm501147g
25347203
A new class of peptidomimetics targeting the polo-box domain of polo-like kinase 1.
2015
10.2210/pdb4whl/pdb
pdb_00004whl
TPO B 4 HAS WRONG CHIRALITY AT ATOM CB
93
1
CCD
2013-05-09
ADSC QUANTUM 270
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
7A (6B, 6C1)
PAL/PLS
1.0000
SYNCHROTRON
PAL/PLS BEAMLINE 7A (6B, 6C1)
27285.158
Serine/threonine-protein kinase PLK1
2.7.11.21
UNP RESIDUES 371-603
1
man
polymer
798.843
C6H5(CH2)8-DERIVATIZED PEPTIDE INHIBITOR
1
syn
polymer
18.015
water
1
nat
water
Polo-like kinase 1,PLK-1,Serine/threonine-protein kinase 13,STPK13
no
no
GAHMDCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYN
DGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLS
NGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRSASNRLKAS
GAHMDCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYN
DGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLS
NGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRSASNRLKAS
A
polypeptide(L)
no
yes
(KAC)(56A)S(TPO)(NH2)
XHSTX
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
237
PLK1, PLK
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
Biological sequence
pET28
1
2.10
41.50
VAPOR DIFFUSION, SITTING DROP
3.5
0.1M Citric acid, 28% PEG8000
293
atom_site
chem_comp_atom
chem_comp_bond
database_2
entity_src_gen
pdbx_entity_src_syn
pdbx_struct_oper_list
struct_conn
repository
Initial release
Database references
Structure summary
Atomic model
Data collection
Database references
Derived calculations
Source and taxonomy
1
0
2014-12-03
1
1
2015-01-21
1
2
2015-02-11
2
0
2023-11-15
_atom_site.auth_atom_id
_atom_site.label_atom_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_entity_src_gen.pdbx_alt_source_flag
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_struct_oper_list.symmetry_operation
_struct_conn.ptnr1_label_atom_id
Korea, Republic Of
Korea Basic Science Institute
T34418
Korea, Republic Of
Rural Development Administration
PJ009594
N
RCSB
Y
PDBJ
2014-09-23
REL
REL
HOH
water
32630
synthetic construct
sample
1
5
Enzyme inhibitor
C6H5(CH2)8-derivatized peptide inhibitor
Polypeptide
HOH
2
3
HOH
HOH
701
A
n
1
367
A
n
2
368
A
n
3
369
A
n
4
370
A
ASP
371
n
5
ASP
371
A
CYS
372
n
6
CYS
372
A
HIS
373
n
7
HIS
373
A
LEU
374
n
8
LEU
374
A
SER
375
n
9
SER
375
A
ASP
376
n
10
ASP
376
A
MET
377
n
11
MET
377
A
LEU
378
n
12
LEU
378
A
GLN
379
n
13
GLN
379
A
GLN
380
n
14
GLN
380
A
LEU
381
n
15
LEU
381
A
HIS
382
n
16
HIS
382
A
SER
383
n
17
SER
383
A
VAL
384
n
18
VAL
384
A
ASN
385
n
19
ASN
385
A
ALA
386
n
20
ALA
386
A
SER
387
n
21
SER
387
A
LYS
388
n
22
LYS
388
A
PRO
389
n
23
PRO
389
A
SER
390
n
24
SER
390
A
GLU
391
n
25
GLU
391
A
ARG
392
n
26
ARG
392
A
GLY
393
n
27
GLY
393
A
LEU
394
n
28
LEU
394
A
VAL
395
n
29
VAL
395
A
ARG
396
n
30
ARG
396
A
GLN
397
n
31
GLN
397
A
GLU
398
n
32
GLU
398
A
GLU
399
n
33
GLU
399
A
ALA
400
n
34
ALA
400
A
GLU
401
n
35
GLU
401
A
ASP
402
n
36
ASP
402
A
PRO
403
n
37
PRO
403
A
ALA
404
n
38
ALA
404
A
CYS
405
n
39
CYS
405
A
ILE
406
n
40
ILE
406
A
PRO
407
n
41
PRO
407
A
ILE
408
n
42
ILE
408
A
PHE
409
n
43
PHE
409
A
TRP
410
n
44
TRP
410
A
VAL
411
n
45
VAL
411
A
SER
412
n
46
SER
412
A
LYS
413
n
47
LYS
413
A
TRP
414
n
48
TRP
414
A
VAL
415
n
49
VAL
415
A
ASP
416
n
50
ASP
416
A
TYR
417
n
51
TYR
417
A
SER
418
n
52
SER
418
A
ASP
419
n
53
ASP
419
A
LYS
420
n
54
LYS
420
A
TYR
421
n
55
TYR
421
A
GLY
422
n
56
GLY
422
A
LEU
423
n
57
LEU
423
A
GLY
424
n
58
GLY
424
A
TYR
425
n
59
TYR
425
A
GLN
426
n
60
GLN
426
A
LEU
427
n
61
LEU
427
A
CYS
428
n
62
CYS
428
A
ASP
429
n
63
ASP
429
A
ASN
430
n
64
ASN
430
A
SER
431
n
65
SER
431
A
VAL
432
n
66
VAL
432
A
GLY
433
n
67
GLY
433
A
VAL
434
n
68
VAL
434
A
LEU
435
n
69
LEU
435
A
PHE
436
n
70
PHE
436
A
ASN
437
n
71
ASN
437
A
ASP
438
n
72
ASP
438
A
SER
439
n
73
SER
439
A
THR
440
n
74
THR
440
A
ARG
441
n
75
ARG
441
A
LEU
442
n
76
LEU
442
A
ILE
443
n
77
ILE
443
A
LEU
444
n
78
LEU
444
A
TYR
445
n
79
TYR
445
A
ASN
446
n
80
ASN
446
A
ASP
447
n
81
ASP
447
A
GLY
448
n
82
GLY
448
A
ASP
449
n
83
ASP
449
A
SER
450
n
84
SER
450
A
LEU
451
n
85
LEU
451
A
GLN
452
n
86
GLN
452
A
TYR
453
n
87
TYR
453
A
ILE
454
n
88
ILE
454
A
GLU
455
n
89
GLU
455
A
ARG
456
n
90
ARG
456
A
ASP
457
n
91
ASP
457
A
GLY
458
n
92
GLY
458
A
THR
459
n
93
THR
459
A
GLU
460
n
94
GLU
460
A
SER
461
n
95
SER
461
A
TYR
462
n
96
TYR
462
A
LEU
463
n
97
LEU
463
A
THR
464
n
98
THR
464
A
VAL
465
n
99
VAL
465
A
SER
466
n
100
SER
466
A
SER
467
n
101
SER
467
A
HIS
468
n
102
HIS
468
A
PRO
469
n
103
PRO
469
A
ASN
470
n
104
ASN
470
A
SER
471
n
105
SER
471
A
LEU
472
n
106
LEU
472
A
MET
473
n
107
MET
473
A
LYS
474
n
108
LYS
474
A
LYS
475
n
109
LYS
475
A
ILE
476
n
110
ILE
476
A
THR
477
n
111
THR
477
A
LEU
478
n
112
LEU
478
A
LEU
479
n
113
LEU
479
A
LYS
480
n
114
LYS
480
A
TYR
481
n
115
TYR
481
A
PHE
482
n
116
PHE
482
A
ARG
483
n
117
ARG
483
A
ASN
484
n
118
ASN
484
A
TYR
485
n
119
TYR
485
A
MET
486
n
120
MET
486
A
SER
487
n
121
SER
487
A
GLU
488
n
122
GLU
488
A
HIS
489
n
123
HIS
489
A
LEU
490
n
124
LEU
490
A
LEU
491
n
125
LEU
491
A
LYS
492
n
126
LYS
492
A
ALA
493
n
127
ALA
493
A
GLY
494
n
128
GLY
494
A
ALA
495
n
129
ALA
495
A
ASN
496
n
130
ASN
496
A
ILE
497
n
131
ILE
497
A
THR
498
n
132
THR
498
A
n
133
499
A
n
134
500
A
n
135
501
A
n
136
502
A
n
137
503
A
n
138
504
A
LEU
505
n
139
LEU
505
A
ALA
506
n
140
ALA
506
A
ARG
507
n
141
ARG
507
A
LEU
508
n
142
LEU
508
A
PRO
509
n
143
PRO
509
A
TYR
510
n
144
TYR
510
A
LEU
511
n
145
LEU
511
A
ARG
512
n
146
ARG
512
A
THR
513
n
147
THR
513
A
TRP
514
n
148
TRP
514
A
PHE
515
n
149
PHE
515
A
ARG
516
n
150
ARG
516
A
THR
517
n
151
THR
517
A
ARG
518
n
152
ARG
518
A
SER
519
n
153
SER
519
A
ALA
520
n
154
ALA
520
A
ILE
521
n
155
ILE
521
A
ILE
522
n
156
ILE
522
A
LEU
523
n
157
LEU
523
A
HIS
524
n
158
HIS
524
A
LEU
525
n
159
LEU
525
A
SER
526
n
160
SER
526
A
ASN
527
n
161
ASN
527
A
GLY
528
n
162
GLY
528
A
SER
529
n
163
SER
529
A
VAL
530
n
164
VAL
530
A
GLN
531
n
165
GLN
531
A
ILE
532
n
166
ILE
532
A
ASN
533
n
167
ASN
533
A
PHE
534
n
168
PHE
534
A
PHE
535
n
169
PHE
535
A
GLN
536
n
170
GLN
536
A
ASP
537
n
171
ASP
537
A
HIS
538
n
172
HIS
538
A
THR
539
n
173
THR
539
A
LYS
540
n
174
LYS
540
A
LEU
541
n
175
LEU
541
A
ILE
542
n
176
ILE
542
A
LEU
543
n
177
LEU
543
A
CYS
544
n
178
CYS
544
A
PRO
545
n
179
PRO
545
A
LEU
546
n
180
LEU
546
A
MET
547
n
181
MET
547
A
ALA
548
n
182
ALA
548
A
ALA
549
n
183
ALA
549
A
VAL
550
n
184
VAL
550
A
THR
551
n
185
THR
551
A
TYR
552
n
186
TYR
552
A
ILE
553
n
187
ILE
553
A
ASP
554
n
188
ASP
554
A
GLU
555
n
189
GLU
555
A
LYS
556
n
190
LYS
556
A
ARG
557
n
191
ARG
557
A
ASP
558
n
192
ASP
558
A
PHE
559
n
193
PHE
559
A
ARG
560
n
194
ARG
560
A
THR
561
n
195
THR
561
A
TYR
562
n
196
TYR
562
A
ARG
563
n
197
ARG
563
A
LEU
564
n
198
LEU
564
A
SER
565
n
199
SER
565
A
LEU
566
n
200
LEU
566
A
LEU
567
n
201
LEU
567
A
GLU
568
n
202
GLU
568
A
GLU
569
n
203
GLU
569
A
TYR
570
n
204
TYR
570
A
GLY
571
n
205
GLY
571
A
CYS
572
n
206
CYS
572
A
CYS
573
n
207
CYS
573
A
LYS
574
n
208
LYS
574
A
GLU
575
n
209
GLU
575
A
LEU
576
n
210
LEU
576
A
ALA
577
n
211
ALA
577
A
SER
578
n
212
SER
578
A
ARG
579
n
213
ARG
579
A
LEU
580
n
214
LEU
580
A
ARG
581
n
215
ARG
581
A
TYR
582
n
216
TYR
582
A
ALA
583
n
217
ALA
583
A
ARG
584
n
218
ARG
584
A
THR
585
n
219
THR
585
A
MET
586
n
220
MET
586
A
VAL
587
n
221
VAL
587
A
ASP
588
n
222
ASP
588
A
LYS
589
n
223
LYS
589
A
LEU
590
n
224
LEU
590
A
LEU
591
n
225
LEU
591
A
SER
592
n
226
SER
592
A
n
227
593
A
n
228
594
A
n
229
595
A
n
230
596
A
n
231
597
A
n
232
598
A
n
233
599
A
n
234
600
A
n
235
601
A
n
236
602
A
n
237
603
A
ABA
1
n
1
KAC
1
B
ABA
1
n
2
56A
2
B
ABA
1
n
3
SER
3
B
ABA
1
n
4
TPO
4
B
ABA
1
n
5
NH2
5
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
415
A
N
VAL
49
A
O
GLY
424
A
O
GLY
58
A
N
TYR
425
A
N
TYR
59
A
O
GLY
433
A
O
GLY
67
A
N
VAL
432
A
N
VAL
66
A
O
LEU
444
A
O
LEU
78
A
N
ARG
441
A
N
ARG
75
A
O
ILE
454
A
O
ILE
88
A
N
LEU
451
A
N
LEU
85
A
O
LEU
463
A
O
LEU
97
A
N
THR
513
A
N
THR
147
A
O
HIS
524
A
O
HIS
158
A
N
LEU
525
A
N
LEU
159
A
O
SER
529
A
O
SER
163
A
N
VAL
530
A
N
VAL
164
A
O
LEU
543
A
O
LEU
177
A
N
LYS
540
A
N
LYS
174
A
O
ILE
553
A
O
ILE
187
A
N
TYR
552
A
N
TYR
186
A
O
ARG
560
A
O
ARG
194
1
A
CD
GLN
379
A
CD
GLN
13
1
Y
1
A
OE1
GLN
379
A
OE1
GLN
13
1
Y
1
A
NE2
GLN
379
A
NE2
GLN
13
1
Y
1
A
NE
ARG
456
A
NE
ARG
90
1
Y
1
A
CZ
ARG
456
A
CZ
ARG
90
1
Y
1
A
NH1
ARG
456
A
NH1
ARG
90
1
Y
1
A
NH2
ARG
456
A
NH2
ARG
90
1
Y
1
A
CD
LYS
474
A
CD
LYS
108
1
Y
1
A
CE
LYS
474
A
CE
LYS
108
1
Y
1
A
NZ
LYS
474
A
NZ
LYS
108
1
Y
1
A
CD
LYS
480
A
CD
LYS
114
1
Y
1
A
CE
LYS
480
A
CE
LYS
114
1
Y
1
A
NZ
LYS
480
A
NZ
LYS
114
1
Y
1
A
CD
GLU
488
A
CD
GLU
122
1
Y
1
A
OE1
GLU
488
A
OE1
GLU
122
1
Y
1
A
OE2
GLU
488
A
OE2
GLU
122
1
Y
1
A
CG
GLN
536
A
CG
GLN
170
1
Y
1
A
CD
GLN
536
A
CD
GLN
170
1
Y
1
A
OE1
GLN
536
A
OE1
GLN
170
1
Y
1
A
NE2
GLN
536
A
NE2
GLN
170
1
Y
1
A
CG
LYS
556
A
CG
LYS
190
1
Y
1
A
CD
LYS
556
A
CD
LYS
190
1
Y
1
A
CE
LYS
556
A
CE
LYS
190
1
Y
1
A
NZ
LYS
556
A
NZ
LYS
190
1
Y
1
A
NE
ARG
557
A
NE
ARG
191
1
Y
1
A
CZ
ARG
557
A
CZ
ARG
191
1
Y
1
A
NH1
ARG
557
A
NH1
ARG
191
1
Y
1
A
NH2
ARG
557
A
NH2
ARG
191
1
Y
1
A
NH1
ARG
560
A
NH1
ARG
194
1
Y
1
A
NH2
ARG
560
A
NH2
ARG
194
1
Y
1
A
CZ
ARG
563
A
CZ
ARG
197
1
Y
1
A
NH1
ARG
563
A
NH1
ARG
197
1
Y
1
A
NH2
ARG
563
A
NH2
ARG
197
1
Y
1
A
CD
LYS
574
A
CD
LYS
208
1
Y
1
A
CE
LYS
574
A
CE
LYS
208
1
Y
1
A
NZ
LYS
574
A
NZ
LYS
208
1
Y
1
A
CE
LYS
589
A
CE
LYS
223
1
Y
1
A
NZ
LYS
589
A
NZ
LYS
223
1
Y
1
A
GLY
367
A
GLY
1
1
Y
1
A
ALA
368
A
ALA
2
1
Y
1
A
HIS
369
A
HIS
3
1
Y
1
A
MET
370
A
MET
4
1
Y
1
A
PRO
499
A
PRO
133
1
Y
1
A
ARG
500
A
ARG
134
1
Y
1
A
GLU
501
A
GLU
135
1
Y
1
A
GLY
502
A
GLY
136
1
Y
1
A
ASP
503
A
ASP
137
1
Y
1
A
GLU
504
A
GLU
138
1
Y
1
A
SER
593
A
SER
227
1
Y
1
A
ARG
594
A
ARG
228
1
Y
1
A
SER
595
A
SER
229
1
Y
1
A
ALA
596
A
ALA
230
1
Y
1
A
SER
597
A
SER
231
1
Y
1
A
ASN
598
A
ASN
232
1
Y
1
A
ARG
599
A
ARG
233
1
Y
1
A
LEU
600
A
LEU
234
1
Y
1
A
LYS
601
A
LYS
235
1
Y
1
A
ALA
602
A
ALA
236
1
Y
1
A
SER
603
A
SER
237
1
Y
1
B
CB
TPO
4
WRONG HAND
1
A
GLN
379
-62.72
-72.25
1
A
GLN
380
-25.61
-57.72
1
A
LYS
388
42.23
71.81
1
A
LEU
394
-151.48
86.27
1
A
ASP
402
-166.62
79.17
1
A
ALA
404
-67.52
17.33
1
A
LYS
420
-138.43
-45.27
1
A
ASN
430
73.40
-2.42
1
A
ASP
438
-68.03
4.64
1
A
ASP
449
-135.11
-45.81
1
A
PRO
469
-49.23
155.24
1
A
HIS
489
-107.21
-80.89
1
A
GLU
575
-50.52
-77.10
1
B
SER
3
-58.47
175.02
109.130
47.3450
26.130
-1.6900
0.0000
0.0000
-1.6900
0.0000
3.3900
0.9510
0.9180
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
0.2454
0.1822
0.1854
2.7100
50
340
6519
6519
5.0000
99.9100
0.2308
0.1639
0.8266
11.7970
0.2460
0.3533
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.3530
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
2.7100
50
1
1832
40.80
34.79
56
0
1775
216
0.013
0.020
1819
0.004
0.020
1696
1.627
1.992
2463
1.075
3.011
3897
7.917
5.000
214
36.625
23.462
78
20.923
15.000
305
18.809
15.000
12
0.087
0.200
278
0.007
0.020
2003
0.001
0.020
427
3.453
4.682
865
3.455
4.684
863
5.456
7.006
1076
0.2830
0.2210
2.7760
34
464
498
20
100.0000
2.7
50
4WHL
6904
1
8.8
16.4
99.9
data reduction
HKL-2000
data collection
ADSC
refinement
REFMAC
5.8.0073
data extraction
PDB_EXTRACT
3.15
data scaling
HKL-2000
phasing
PHASER
A New Class of Peptidomimetics Targeting the Polo-box Domain of Polo-like kinase 1
1
N
N
2
N
N
3
N
N
A
ASP
371
A
ASP
5
HELX_P
A
SER
387
A
SER
21
1
AA1
17
A
ARG
396
A
ARG
30
HELX_P
A
GLU
401
A
GLU
35
5
AA2
6
A
ASP
402
A
ASP
36
HELX_P
A
ILE
406
A
ILE
40
5
AA3
5
A
PRO
469
A
PRO
103
HELX_P
A
SER
471
A
SER
105
5
AA4
3
A
LEU
472
A
LEU
106
HELX_P
A
SER
487
A
SER
121
1
AA5
16
A
LEU
564
A
LEU
198
HELX_P
A
GLY
571
A
GLY
205
1
AA6
8
A
CYS
573
A
CYS
207
HELX_P
A
SER
592
A
SER
226
1
AA7
20
covale
1.340
both
B
KAC
1
B
C
KAC
1
1_555
B
56A
2
B
N
56A
2
1_555
covale
1.365
both
B
56A
2
B
C
56A
2
1_555
B
SER
3
B
N
SER
3
1_555
covale
1.317
both
B
SER
3
B
C
SER
3
1_555
B
TPO
4
B
N
TPO
4
1_555
covale
1.339
both
B
TPO
4
B
C
TPO
4
1_555
B
NH2
5
B
N
NH2
5
1_555
TRANSFERASE/TRANSFERASE INHIBITOR
Polo-like kinase, Polo-box domain, Inhibitor, peptide derivative, TRANSFERASE-TRANSFERASE INHIBITOR complex
PLK1_HUMAN
UNP
1
371
P53350
DCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDS
LQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSV
QINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRSASNRLKAS
4WHL
PDB
2
1
4WHL
371
603
4WHL
371
603
P53350
A
1
5
237
1
5
4WHL
1
5
4WHL
B
2
1
5
1
expression tag
GLY
367
4WHL
A
P53350
UNP
1
1
expression tag
ALA
368
4WHL
A
P53350
UNP
2
1
expression tag
HIS
369
4WHL
A
P53350
UNP
3
1
expression tag
MET
370
4WHL
A
P53350
UNP
4
6
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
411
A
VAL
45
A
ASP
416
A
ASP
50
A
GLY
422
A
GLY
56
A
LEU
427
A
LEU
61
A
VAL
432
A
VAL
66
A
PHE
436
A
PHE
70
A
ARG
441
A
ARG
75
A
LEU
444
A
LEU
78
A
SER
450
A
SER
84
A
ILE
454
A
ILE
88
A
GLU
460
A
GLU
94
A
THR
464
A
THR
98
A
LEU
511
A
LEU
145
A
ARG
516
A
ARG
150
A
ALA
520
A
ALA
154
A
LEU
525
A
LEU
159
A
SER
529
A
SER
163
A
PHE
534
A
PHE
168
A
LYS
540
A
LYS
174
A
CYS
544
A
CYS
178
A
ALA
549
A
ALA
183
A
ILE
553
A
ILE
187
A
PHE
559
A
PHE
193
A
ARG
563
A
ARG
197
BINDING SITE FOR CHAIN B OF C6H5(CH2)8-DERIVATIZED PEPTIDE INHIBITOR
Software
17
A
LYS
413
A
LYS
47
17
1_555
A
TRP
414
A
TRP
48
17
1_555
A
VAL
415
A
VAL
49
17
1_555
A
ASP
416
A
ASP
50
17
1_555
A
TYR
421
A
TYR
55
17
1_555
A
SER
450
A
SER
84
17
6_477
A
LEU
451
A
LEU
85
17
6_477
A
TYR
462
A
TYR
96
17
6_477
A
LEU
463
A
LEU
97
17
6_477
A
THR
464
A
THR
98
17
6_477
A
TYR
481
A
TYR
115
17
1_555
A
TYR
485
A
TYR
119
17
1_555
A
LEU
490
A
LEU
124
17
1_555
A
LEU
491
A
LEU
125
17
1_555
A
ARG
516
A
ARG
150
17
1_555
A
HIS
538
A
HIS
172
17
1_555
A
LYS
540
A
LYS
174
17
1_555
96
P 43 21 2