0.004130 0.002384 0.000000 0.000000 0.004769 0.000000 0.000000 0.000000 0.009114 0.00000 0.00000 0.00000 Blankenship, E. Lodowski, D.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 242.136 242.136 109.721 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-mannopyranose beta-D-mannose; D-mannose; mannose D-saccharide, beta linking C15 H30 O6 306.395 n nonyl beta-D-glucopyranoside Beta-NONYLGLUCOSIDE; nonyl beta-D-glucoside; nonyl D-glucoside; nonyl glucoside D-saccharide C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C16 H32 O2 256.424 PALMITIC ACID non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 R C N 75 S C N 76 S C N 77 S C N 78 R C N 79 N C N 80 N O N 81 N O N 82 N O N 83 N O N 84 N O N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 R C N 99 R C N 100 S C N 101 S C N 102 R C N 103 N C N 104 N C N 105 N C N 106 N C N 107 N C N 108 N C N 109 N C N 110 N C N 111 N C N 112 N C N 113 N O N 114 N O N 115 N O N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N N N 150 R C N 151 N C N 152 N O N 153 N C N 154 N S N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 S C N 165 N C N 166 N O N 167 N C N 168 N C N 169 N C N 170 N O N 171 N N N 172 N O N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N O N 191 N O N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 N C N 204 N C N 205 N O N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N N N 213 S C N 214 N C N 215 N O N 216 N C Y 217 N C Y 218 N N Y 219 N C Y 220 N C Y 221 N N N 222 N O N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N O N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 S C N 241 N C N 242 N C N 243 N C N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N N N 259 S C N 260 N C N 261 N O N 262 N C N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C N 285 N C N 286 N C N 287 N C N 288 N N N 289 N O N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C N 310 N C N 311 N S N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 R C N 326 R C N 327 R C N 328 S C N 329 R C N 330 N C N 331 N C N 332 N C N 333 N N N 334 N O N 335 N O N 336 N O N 337 N O N 338 N O N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N C N 379 N O N 380 N O N 381 N C N 382 N C N 383 N C N 384 N C N 385 N C N 386 N C N 387 N C N 388 N C N 389 N C N 390 N C N 391 N C N 392 N C N 393 N C N 394 N C N 395 N C N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N N N 429 S C N 430 N C N 431 N O N 432 N C N 433 N C N 434 N C N 435 N O N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N N N 446 S C N 447 N C N 448 N O N 449 N C N 450 N O N 451 N O N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N N N 460 S C N 461 N C N 462 N O N 463 R C N 464 N O N 465 N C N 466 N O N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N N N 477 S C N 478 N C N 479 N O N 480 N C Y 481 N C Y 482 N C Y 483 N C Y 484 N N Y 485 N C Y 486 N C Y 487 N C Y 488 N C Y 489 N C N 490 N O N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N N N 504 S C N 505 N C N 506 N O N 507 N C Y 508 N C Y 509 N C Y 510 N C Y 511 N C Y 512 N C Y 513 N C N 514 N O N 515 N O N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N N N 528 S C N 529 N C N 530 N O N 531 N C N 532 N C N 533 N C N 534 N O N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N H N 541 N H N 542 N H N 543 N H N 544 N H N 545 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing Y 215 N sing Y 216 N doub Y 217 N doub N 218 N sing Y 219 N sing N 220 N sing Y 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing Y 353 N doub Y 354 N sing Y 355 N sing N 356 N sing Y 357 N doub N 358 N sing Y 359 N doub N 360 N sing Y 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N doub N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N doub N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N doub N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N doub N 467 N sing N 468 N sing N 469 N sing N 470 N sing Y 471 N doub Y 472 N sing Y 473 N sing N 474 N sing Y 475 N doub Y 476 N sing Y 477 N sing N 478 N sing Y 479 N sing Y 480 N doub N 481 N sing Y 482 N doub N 483 N sing Y 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N doub N 495 N sing N 496 N sing N 497 N sing N 498 N sing Y 499 N doub Y 500 N sing Y 501 N sing N 502 N sing Y 503 N doub N 504 N sing Y 505 N doub N 506 N sing Y 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N doub N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing UK Structure STRUE6 2005 0969-2126 23 2358 2364 10.1016/j.str.2015.09.015 26526852 The High-Resolution Structure of Activated Opsin Reveals a Conserved Solvent Network in the Transmembrane Region Essential for Activation. 2015 10.2210/pdb4x1h/pdb pdb_00004x1h 100 1 PIXEL 2014-08-07 PSI PILATUS 6M CRYO-COOLED SI(111) SINGLE WAVELENGTH M x-ray 1 0.97920 1.0 24-ID-C APS 0.97920 SYNCHROTRON APS BEAMLINE 24-ID-C 39031.457 Rhodopsin 1 nat polymer 1224.447 C-terminal derived peptide of guanine nucleotide-binding protein G(t) subunit alpha-1 1 syn polymer 748.682 beta-D-mannopyranose-(1-2)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 424.401 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 306.395 nonyl beta-D-glucopyranoside 2 syn non-polymer 256.424 PALMITIC ACID 2 syn non-polymer 18.015 water 65 nat water no no MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT LCCGKNPLGDDEASTTVSKTETSQVAPA MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT LCCGKNPLGDDEASTTVSKTETSQVAPA A polypeptide(L) no no VLEDLKSCGLF VLEDLKSCGLF C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Bovine sample 1 348 9913 Bos taurus retina VAPOR DIFFUSION, SITTING DROP 6.0 3.1M ammonium sulfate, 100mM citrate 277 citation pdbx_audit_support pdbx_struct_oper_list software pdbx_audit_support atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_unobs_or_zero_occ_atoms struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn repository Initial release Carbohydrate remediation repository Remediation Database references Database references Author supporting evidence Database references Derived calculations Refinement description Author supporting evidence Advisory Atomic model Data collection Derived calculations Structure summary Data collection Database references Derived calculations Refinement description Structure summary 1 0 2015-11-04 1 1 2015-11-18 1 2 2015-12-16 1 3 2017-09-06 1 4 2017-11-22 1 5 2019-12-11 2 0 2020-07-29 2 1 2023-09-27 _citation.journal_id_CSD _pdbx_audit_support.funding_organization _pdbx_struct_oper_list.symmetry_operation _software.classification _pdbx_audit_support.funding_organization _atom_site.auth_asym_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_entity_id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.type _pdbx_struct_assembly_gen.asym_id_list _pdbx_unobs_or_zero_occ_atoms.label_asym_id _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag United States National Institutes of Health/National Eye Institute (NIH/NEI) EY019718 A NAG 401 n B NAG 1 A NAG 402 n B NAG 2 A BMA 403 n B BMA 3 A BMA 404 n B BMA 4 A NAG 405 n D NAG 1 A NAG 406 n D NAG 2 DManpb b-D-mannopyranose b-D-Manp Man b-nonylglucoside DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc N RCSB Y RCSB 2014-11-24 REL REL oligosaccharide oligosaccharide DManpb1-2DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2-2/a4-b1_b4-c1_c2-d1 3 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(2+1)][b-D-Manp]{}}}}} 3 PDB-CARE LINUCS DGlcpNAcb1-3DGlcpNAcb1- 4 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a3-b1 4 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(3+1)][b-D-GlcpNAc]{}}} 4 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 3 O1 HO4 sing C1 O4 BMA NAG 3 2 3 O1 HO4 sing C1 O2 BMA BMA 4 3 3 O1 HO2 sing C1 O3 NAG NAG 2 1 4 O1 HO3 sing n n n n n n BNG nonyl beta-D-glucopyranoside PLM PALMITIC ACID HOH water 9913 Bos taurus sample 1 11 The C-terminal derived peptide of guanine nucleotide-binding protein G(t) is derived from 340-350 positions in the transducin alpha subunit utilizing a phage display library derived from the C terminal region of transducin (Aris, L, et al 2001) with sequence "IKENLKDCGLF". The construct in this structure has the following sequence: "VLEDLKSCGLF." Hence there are the following mutations I340V, K341L, N342D, and D346S. 3CAP PDB ENTRY 3CAP PDB experimental model BNG 407 5 BNG BNG 407 A BNG 410 5 BNG BNG 410 A PLM 1322 6 PLM PLM 1322 A PLM 1323 6 PLM PLM 1323 A HOH 501 7 HOH HOH 501 A HOH 502 7 HOH HOH 502 A HOH 503 7 HOH HOH 503 A HOH 504 7 HOH HOH 504 A HOH 505 7 HOH HOH 505 A HOH 506 7 HOH HOH 506 A HOH 507 7 HOH HOH 507 A HOH 508 7 HOH HOH 508 A HOH 509 7 HOH HOH 509 A HOH 510 7 HOH HOH 510 A HOH 511 7 HOH HOH 511 A HOH 512 7 HOH HOH 512 A HOH 513 7 HOH HOH 513 A HOH 514 7 HOH HOH 514 A HOH 515 7 HOH HOH 515 A HOH 516 7 HOH HOH 516 A HOH 517 7 HOH HOH 517 A HOH 518 7 HOH HOH 518 A HOH 519 7 HOH HOH 519 A HOH 520 7 HOH HOH 520 A HOH 521 7 HOH HOH 521 A HOH 522 7 HOH HOH 522 A HOH 523 7 HOH HOH 523 A HOH 524 7 HOH HOH 524 A HOH 525 7 HOH HOH 525 A HOH 526 7 HOH HOH 526 A HOH 527 7 HOH HOH 527 A HOH 528 7 HOH HOH 528 A HOH 529 7 HOH HOH 529 A HOH 530 7 HOH HOH 530 A HOH 531 7 HOH HOH 531 A HOH 532 7 HOH HOH 532 A HOH 533 7 HOH HOH 533 A HOH 534 7 HOH HOH 534 A HOH 535 7 HOH HOH 535 A HOH 536 7 HOH HOH 536 A HOH 537 7 HOH HOH 537 A HOH 538 7 HOH HOH 538 A HOH 539 7 HOH HOH 539 A HOH 540 7 HOH HOH 540 A HOH 541 7 HOH HOH 541 A HOH 542 7 HOH HOH 542 A HOH 543 7 HOH HOH 543 A HOH 544 7 HOH HOH 544 A HOH 545 7 HOH HOH 545 A HOH 546 7 HOH HOH 546 A HOH 547 7 HOH HOH 547 A HOH 548 7 HOH HOH 548 A HOH 549 7 HOH HOH 549 A HOH 550 7 HOH HOH 550 A HOH 551 7 HOH HOH 551 A HOH 552 7 HOH HOH 552 A HOH 553 7 HOH HOH 553 A HOH 554 7 HOH HOH 554 A HOH 555 7 HOH HOH 555 A HOH 556 7 HOH HOH 556 A HOH 557 7 HOH HOH 557 A HOH 558 7 HOH HOH 558 A HOH 559 7 HOH HOH 559 A HOH 560 7 HOH HOH 560 A HOH 561 7 HOH HOH 561 A HOH 562 7 HOH HOH 562 A HOH 563 7 HOH HOH 563 A HOH 501 7 HOH HOH 501 C HOH 502 7 HOH HOH 502 C MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A GLY 3 n 3 GLY 3 A THR 4 n 4 THR 4 A GLU 5 n 5 GLU 5 A GLY 6 n 6 GLY 6 A PRO 7 n 7 PRO 7 A ASN 8 n 8 ASN 8 A PHE 9 n 9 PHE 9 A TYR 10 n 10 TYR 10 A VAL 11 n 11 VAL 11 A PRO 12 n 12 PRO 12 A PHE 13 n 13 PHE 13 A SER 14 n 14 SER 14 A ASN 15 n 15 ASN 15 A LYS 16 n 16 LYS 16 A THR 17 n 17 THR 17 A GLY 18 n 18 GLY 18 A VAL 19 n 19 VAL 19 A VAL 20 n 20 VAL 20 A ARG 21 n 21 ARG 21 A SER 22 n 22 SER 22 A PRO 23 n 23 PRO 23 A PHE 24 n 24 PHE 24 A GLU 25 n 25 GLU 25 A ALA 26 n 26 ALA 26 A PRO 27 n 27 PRO 27 A GLN 28 n 28 GLN 28 A TYR 29 n 29 TYR 29 A TYR 30 n 30 TYR 30 A LEU 31 n 31 LEU 31 A ALA 32 n 32 ALA 32 A GLU 33 n 33 GLU 33 A PRO 34 n 34 PRO 34 A TRP 35 n 35 TRP 35 A GLN 36 n 36 GLN 36 A PHE 37 n 37 PHE 37 A SER 38 n 38 SER 38 A MET 39 n 39 MET 39 A LEU 40 n 40 LEU 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A TYR 43 n 43 TYR 43 A MET 44 n 44 MET 44 A PHE 45 n 45 PHE 45 A LEU 46 n 46 LEU 46 A LEU 47 n 47 LEU 47 A ILE 48 n 48 ILE 48 A MET 49 n 49 MET 49 A LEU 50 n 50 LEU 50 A GLY 51 n 51 GLY 51 A PHE 52 n 52 PHE 52 A PRO 53 n 53 PRO 53 A ILE 54 n 54 ILE 54 A ASN 55 n 55 ASN 55 A PHE 56 n 56 PHE 56 A LEU 57 n 57 LEU 57 A THR 58 n 58 THR 58 A LEU 59 n 59 LEU 59 A TYR 60 n 60 TYR 60 A VAL 61 n 61 VAL 61 A THR 62 n 62 THR 62 A VAL 63 n 63 VAL 63 A GLN 64 n 64 GLN 64 A HIS 65 n 65 HIS 65 A LYS 66 n 66 LYS 66 A LYS 67 n 67 LYS 67 A LEU 68 n 68 LEU 68 A ARG 69 n 69 ARG 69 A THR 70 n 70 THR 70 A PRO 71 n 71 PRO 71 A LEU 72 n 72 LEU 72 A ASN 73 n 73 ASN 73 A TYR 74 n 74 TYR 74 A ILE 75 n 75 ILE 75 A LEU 76 n 76 LEU 76 A LEU 77 n 77 LEU 77 A ASN 78 n 78 ASN 78 A LEU 79 n 79 LEU 79 A ALA 80 n 80 ALA 80 A VAL 81 n 81 VAL 81 A ALA 82 n 82 ALA 82 A ASP 83 n 83 ASP 83 A LEU 84 n 84 LEU 84 A PHE 85 n 85 PHE 85 A MET 86 n 86 MET 86 A VAL 87 n 87 VAL 87 A PHE 88 n 88 PHE 88 A GLY 89 n 89 GLY 89 A GLY 90 n 90 GLY 90 A PHE 91 n 91 PHE 91 A THR 92 n 92 THR 92 A THR 93 n 93 THR 93 A THR 94 n 94 THR 94 A LEU 95 n 95 LEU 95 A TYR 96 n 96 TYR 96 A THR 97 n 97 THR 97 A SER 98 n 98 SER 98 A LEU 99 n 99 LEU 99 A HIS 100 n 100 HIS 100 A GLY 101 n 101 GLY 101 A TYR 102 n 102 TYR 102 A PHE 103 n 103 PHE 103 A VAL 104 n 104 VAL 104 A PHE 105 n 105 PHE 105 A GLY 106 n 106 GLY 106 A PRO 107 n 107 PRO 107 A THR 108 n 108 THR 108 A GLY 109 n 109 GLY 109 A CYS 110 n 110 CYS 110 A ASN 111 n 111 ASN 111 A LEU 112 n 112 LEU 112 A GLU 113 n 113 GLU 113 A GLY 114 n 114 GLY 114 A PHE 115 n 115 PHE 115 A PHE 116 n 116 PHE 116 A ALA 117 n 117 ALA 117 A THR 118 n 118 THR 118 A LEU 119 n 119 LEU 119 A GLY 120 n 120 GLY 120 A GLY 121 n 121 GLY 121 A GLU 122 n 122 GLU 122 A ILE 123 n 123 ILE 123 A ALA 124 n 124 ALA 124 A LEU 125 n 125 LEU 125 A TRP 126 n 126 TRP 126 A SER 127 n 127 SER 127 A LEU 128 n 128 LEU 128 A VAL 129 n 129 VAL 129 A VAL 130 n 130 VAL 130 A LEU 131 n 131 LEU 131 A ALA 132 n 132 ALA 132 A ILE 133 n 133 ILE 133 A GLU 134 n 134 GLU 134 A ARG 135 n 135 ARG 135 A TYR 136 n 136 TYR 136 A VAL 137 n 137 VAL 137 A VAL 138 n 138 VAL 138 A VAL 139 n 139 VAL 139 A CYS 140 n 140 CYS 140 A LYS 141 n 141 LYS 141 A PRO 142 n 142 PRO 142 A MET 143 n 143 MET 143 A SER 144 n 144 SER 144 A ASN 145 n 145 ASN 145 A PHE 146 n 146 PHE 146 A ARG 147 n 147 ARG 147 A PHE 148 n 148 PHE 148 A GLY 149 n 149 GLY 149 A GLU 150 n 150 GLU 150 A ASN 151 n 151 ASN 151 A HIS 152 n 152 HIS 152 A ALA 153 n 153 ALA 153 A ILE 154 n 154 ILE 154 A MET 155 n 155 MET 155 A GLY 156 n 156 GLY 156 A VAL 157 n 157 VAL 157 A ALA 158 n 158 ALA 158 A PHE 159 n 159 PHE 159 A THR 160 n 160 THR 160 A TRP 161 n 161 TRP 161 A VAL 162 n 162 VAL 162 A MET 163 n 163 MET 163 A ALA 164 n 164 ALA 164 A LEU 165 n 165 LEU 165 A ALA 166 n 166 ALA 166 A CYS 167 n 167 CYS 167 A ALA 168 n 168 ALA 168 A ALA 169 n 169 ALA 169 A PRO 170 n 170 PRO 170 A PRO 171 n 171 PRO 171 A LEU 172 n 172 LEU 172 A VAL 173 n 173 VAL 173 A GLY 174 n 174 GLY 174 A TRP 175 n 175 TRP 175 A SER 176 n 176 SER 176 A ARG 177 n 177 ARG 177 A TYR 178 n 178 TYR 178 A ILE 179 n 179 ILE 179 A PRO 180 n 180 PRO 180 A GLU 181 n 181 GLU 181 A GLY 182 n 182 GLY 182 A MET 183 n 183 MET 183 A GLN 184 n 184 GLN 184 A CYS 185 n 185 CYS 185 A SER 186 n 186 SER 186 A CYS 187 n 187 CYS 187 A GLY 188 n 188 GLY 188 A ILE 189 n 189 ILE 189 A ASP 190 n 190 ASP 190 A TYR 191 n 191 TYR 191 A TYR 192 n 192 TYR 192 A THR 193 n 193 THR 193 A PRO 194 n 194 PRO 194 A HIS 195 n 195 HIS 195 A GLU 196 n 196 GLU 196 A GLU 197 n 197 GLU 197 A THR 198 n 198 THR 198 A ASN 199 n 199 ASN 199 A ASN 200 n 200 ASN 200 A GLU 201 n 201 GLU 201 A SER 202 n 202 SER 202 A PHE 203 n 203 PHE 203 A VAL 204 n 204 VAL 204 A ILE 205 n 205 ILE 205 A TYR 206 n 206 TYR 206 A MET 207 n 207 MET 207 A PHE 208 n 208 PHE 208 A VAL 209 n 209 VAL 209 A VAL 210 n 210 VAL 210 A HIS 211 n 211 HIS 211 A PHE 212 n 212 PHE 212 A ILE 213 n 213 ILE 213 A ILE 214 n 214 ILE 214 A PRO 215 n 215 PRO 215 A LEU 216 n 216 LEU 216 A ILE 217 n 217 ILE 217 A VAL 218 n 218 VAL 218 A ILE 219 n 219 ILE 219 A PHE 220 n 220 PHE 220 A PHE 221 n 221 PHE 221 A CYS 222 n 222 CYS 222 A TYR 223 n 223 TYR 223 A GLY 224 n 224 GLY 224 A GLN 225 n 225 GLN 225 A LEU 226 n 226 LEU 226 A VAL 227 n 227 VAL 227 A PHE 228 n 228 PHE 228 A THR 229 n 229 THR 229 A VAL 230 n 230 VAL 230 A LYS 231 n 231 LYS 231 A GLU 232 n 232 GLU 232 A ALA 233 n 233 ALA 233 A ALA 234 n 234 ALA 234 A ALA 235 n 235 ALA 235 A GLN 236 n 236 GLN 236 A GLN 237 n 237 GLN 237 A GLN 238 n 238 GLN 238 A GLU 239 n 239 GLU 239 A SER 240 n 240 SER 240 A ALA 241 n 241 ALA 241 A THR 242 n 242 THR 242 A THR 243 n 243 THR 243 A GLN 244 n 244 GLN 244 A LYS 245 n 245 LYS 245 A ALA 246 n 246 ALA 246 A GLU 247 n 247 GLU 247 A LYS 248 n 248 LYS 248 A GLU 249 n 249 GLU 249 A VAL 250 n 250 VAL 250 A THR 251 n 251 THR 251 A ARG 252 n 252 ARG 252 A MET 253 n 253 MET 253 A VAL 254 n 254 VAL 254 A ILE 255 n 255 ILE 255 A ILE 256 n 256 ILE 256 A MET 257 n 257 MET 257 A VAL 258 n 258 VAL 258 A ILE 259 n 259 ILE 259 A ALA 260 n 260 ALA 260 A PHE 261 n 261 PHE 261 A LEU 262 n 262 LEU 262 A ILE 263 n 263 ILE 263 A CYS 264 n 264 CYS 264 A TRP 265 n 265 TRP 265 A LEU 266 n 266 LEU 266 A PRO 267 n 267 PRO 267 A TYR 268 n 268 TYR 268 A ALA 269 n 269 ALA 269 A GLY 270 n 270 GLY 270 A VAL 271 n 271 VAL 271 A ALA 272 n 272 ALA 272 A PHE 273 n 273 PHE 273 A TYR 274 n 274 TYR 274 A ILE 275 n 275 ILE 275 A PHE 276 n 276 PHE 276 A THR 277 n 277 THR 277 A HIS 278 n 278 HIS 278 A GLN 279 n 279 GLN 279 A GLY 280 n 280 GLY 280 A SER 281 n 281 SER 281 A ASP 282 n 282 ASP 282 A PHE 283 n 283 PHE 283 A GLY 284 n 284 GLY 284 A PRO 285 n 285 PRO 285 A ILE 286 n 286 ILE 286 A PHE 287 n 287 PHE 287 A MET 288 n 288 MET 288 A THR 289 n 289 THR 289 A ILE 290 n 290 ILE 290 A PRO 291 n 291 PRO 291 A ALA 292 n 292 ALA 292 A PHE 293 n 293 PHE 293 A PHE 294 n 294 PHE 294 A ALA 295 n 295 ALA 295 A LYS 296 n 296 LYS 296 A THR 297 n 297 THR 297 A SER 298 n 298 SER 298 A ALA 299 n 299 ALA 299 A VAL 300 n 300 VAL 300 A TYR 301 n 301 TYR 301 A ASN 302 n 302 ASN 302 A PRO 303 n 303 PRO 303 A VAL 304 n 304 VAL 304 A ILE 305 n 305 ILE 305 A TYR 306 n 306 TYR 306 A ILE 307 n 307 ILE 307 A MET 308 n 308 MET 308 A MET 309 n 309 MET 309 A ASN 310 n 310 ASN 310 A LYS 311 n 311 LYS 311 A GLN 312 n 312 GLN 312 A PHE 313 n 313 PHE 313 A ARG 314 n 314 ARG 314 A ASN 315 n 315 ASN 315 A CYS 316 n 316 CYS 316 A MET 317 n 317 MET 317 A VAL 318 n 318 VAL 318 A THR 319 n 319 THR 319 A THR 320 n 320 THR 320 A LEU 321 n 321 LEU 321 A CYS 322 n 322 CYS 322 A CYS 323 n 323 CYS 323 A GLY 324 n 324 GLY 324 A LYS 325 n 325 LYS 325 A ASN 326 n 326 ASN 326 A n 327 327 A n 328 328 A n 329 329 A n 330 330 A n 331 331 A n 332 332 A n 333 333 A n 334 334 A n 335 335 A n 336 336 A n 337 337 A n 338 338 A n 339 339 A n 340 340 A n 341 341 A n 342 342 A n 343 343 A n 344 344 A n 345 345 A n 346 346 A n 347 347 A n 348 348 A VAL 340 n 1 VAL 340 C LEU 341 n 2 LEU 341 C GLU 342 n 3 GLU 342 C ASP 343 n 4 ASP 343 C LEU 344 n 5 LEU 344 C LYS 345 n 6 LYS 345 C SER 346 n 7 SER 346 C CYS 347 n 8 CYS 347 C GLY 348 n 9 GLY 348 C LEU 349 n 10 LEU 349 C PHE 350 n 11 PHE 350 C 4.3454 -3.7707 -1.1687 9.4111 5.4167 3.6838 -0.0899 0.1805 -0.1110 0.4486 0.1161 1.1012 0.6999 -0.2875 -0.0174 0.5952 -0.0511 -0.0094 0.3035 0.1878 0.9137 refined 19.7998 -65.4033 -38.4804 X-RAY DIFFRACTION 1.3209 -0.8568 -0.0239 2.3769 0.1424 1.2240 -0.0543 -0.0749 -0.0358 0.2766 0.0101 -0.3866 0.0365 -0.0135 0.0254 0.3487 0.0085 0.0516 0.2448 0.0714 0.6120 refined 19.7868 -38.1699 -40.1027 X-RAY DIFFRACTION 5.8354 0.4622 0.6078 2.7707 0.1150 4.3955 -0.3995 -0.6658 0.4105 0.7293 0.1418 0.6164 -0.5508 -0.2201 0.2163 0.6098 0.0961 0.1178 0.3557 0.0222 0.4004 refined 7.5914 -25.9207 -24.6398 X-RAY DIFFRACTION 2.9529 -1.8031 -2.2404 3.2721 2.8112 2.6611 -0.6457 -0.1799 -0.5955 0.6260 0.2994 0.2285 0.3123 -0.2001 0.2338 0.6307 0.1155 0.1258 0.3554 0.1674 0.7749 refined 18.7642 -51.7568 -31.3877 X-RAY DIFFRACTION 3.8289 -0.9699 -1.2147 0.4076 0.8776 2.8306 -0.2181 -0.3094 -0.9232 0.3426 0.1043 0.0796 0.8015 -0.1626 -0.0413 0.7197 0.0188 0.2001 0.4380 0.1965 0.8706 refined 10.2418 -52.5469 -29.1612 X-RAY DIFFRACTION 3.9705 -4.3828 3.3223 7.7854 -5.8634 6.3582 -0.3453 -0.3235 0.4224 0.4063 0.3585 0.7425 -0.3517 -0.7067 -0.0694 0.3819 0.0600 0.1538 0.4732 -0.0006 0.7845 refined -8.5810 -25.4130 -36.9252 X-RAY DIFFRACTION 5.7948 -5.0213 1.2670 6.4099 -1.1336 2.9001 -0.1855 -0.1389 0.0704 0.0477 0.1240 -0.2363 0.1319 -0.3690 0.0838 0.3277 -0.0022 0.1161 0.3766 -0.0394 0.6612 refined -0.2040 -35.4983 -42.5854 X-RAY DIFFRACTION 0.7960 0.3129 1.2797 0.2944 0.2059 2.5966 -0.0355 -0.1077 -1.1566 0.8417 0.0154 0.3736 1.0210 0.0694 -0.1585 0.7080 0.0391 0.1933 0.3519 0.0452 1.1024 refined 10.7290 -46.3657 -43.7458 X-RAY DIFFRACTION 5.7608 6.3862 -4.4993 8.9413 -2.4053 9.0282 0.1532 0.0768 0.1745 -0.0388 0.1251 0.0566 -0.3562 0.0972 -0.3973 0.5237 0.0914 0.0550 0.3421 0.0746 0.8125 refined 14.6797 -16.9530 -48.2677 X-RAY DIFFRACTION 9.9619 -2.9519 4.9010 4.1923 -0.0929 2.9687 -0.2639 0.3075 0.8262 0.9278 0.2487 0.9118 -1.4576 -0.7778 0.1742 0.6174 0.1955 0.1419 0.5003 0.1375 0.8582 refined -0.6051 -14.9053 -38.9274 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'A' and (resid 1 through 16 ) X-RAY DIFFRACTION 2 chain 'A' and (resid 17 through 140 ) X-RAY DIFFRACTION 3 chain 'A' and (resid 141 through 168 ) X-RAY DIFFRACTION 4 chain 'A' and (resid 169 through 185 ) X-RAY DIFFRACTION 5 chain 'A' and (resid 186 through 212 ) X-RAY DIFFRACTION 6 chain 'A' and (resid 213 through 240 ) X-RAY DIFFRACTION 7 chain 'A' and (resid 241 through 277 ) X-RAY DIFFRACTION 8 chain 'A' and (resid 278 through 306 ) X-RAY DIFFRACTION 9 chain 'A' and (resid 307 through 326 ) X-RAY DIFFRACTION 10 chain 'C' and (resid 340 through 350 ) author_and_software_defined_assembly PISA 2 dimeric 5130 27 17540 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 4 A N THR 4 A O VAL 11 A O VAL 11 A N GLU 181 A N GLU 181 A O SER 186 A O SER 186 1 A C7 PLM 1322 G C7 PLM 1 1 N 1 A C8 PLM 1322 G C8 PLM 1 1 N 1 A C9 PLM 1322 G C9 PLM 1 1 N 1 A CA PLM 1322 G CA PLM 1 1 N 1 A CB PLM 1322 G CB PLM 1 1 N 1 A CC PLM 1322 G CC PLM 1 1 N 1 A CD PLM 1322 G CD PLM 1 1 N 1 A CE PLM 1322 G CE PLM 1 1 N 1 A CF PLM 1322 G CF PLM 1 1 N 1 A CG PLM 1322 G CG PLM 1 1 N 1 A PRO 327 A PRO 327 1 Y 1 A LEU 328 A LEU 328 1 Y 1 A GLY 329 A GLY 329 1 Y 1 A ASP 330 A ASP 330 1 Y 1 A ASP 331 A ASP 331 1 Y 1 A GLU 332 A GLU 332 1 Y 1 A ALA 333 A ALA 333 1 Y 1 A SER 334 A SER 334 1 Y 1 A THR 335 A THR 335 1 Y 1 A THR 336 A THR 336 1 Y 1 A VAL 337 A VAL 337 1 Y 1 A SER 338 A SER 338 1 Y 1 A LYS 339 A LYS 339 1 Y 1 A THR 340 A THR 340 1 Y 1 A GLU 341 A GLU 341 1 Y 1 A THR 342 A THR 342 1 Y 1 A SER 343 A SER 343 1 Y 1 A GLN 344 A GLN 344 1 Y 1 A VAL 345 A VAL 345 1 Y 1 A ALA 346 A ALA 346 1 Y 1 A PRO 347 A PRO 347 1 Y 1 A ALA 348 A ALA 348 1 Y 1 A ASN 2 72.81 -12.33 1 A GLN 28 -102.49 43.13 1 A SER 176 62.22 -160.66 1 A PHE 212 -139.53 -56.53 1 A GLN 237 -149.30 54.07 1 A HIS 278 -111.81 67.05 0.2285 0.2171 0.2177 2.290 39.907 2554 50642 5.04 91.84 0.26 Derived from 3CAP, extended to higher resolution 1 FREE R-VALUE 1.34 MOLECULAR REPLACEMENT 29.09 0.90 1.11 PDB ENTRY 3CAP ML FLAT BULK SOLVENT MODEL 2.290 39.907 65 2886 144 0 2677 0.004 2972 0.878 4046 13.420 1082 0.036 465 0.004 488 0.3405 0.3672 2.3341 117 2346 81.00 0.3425 0.3386 2.3817 131 2577 89.00 0.3743 0.3369 2.4335 146 2587 90.00 0.3474 0.3164 2.4901 137 2603 90.00 0.2726 0.2815 2.5524 155 2574 90.00 0.2908 0.2780 2.6214 121 2607 90.00 0.3164 0.2852 2.6985 114 2613 89.00 0.3427 0.2629 2.7856 135 2496 86.00 0.2729 0.2370 2.8851 125 2515 85.00 0.2713 0.2262 3.0006 139 2703 94.00 0.2493 0.2213 3.1371 158 2745 95.00 0.2432 0.2157 3.3024 142 2775 96.00 0.2288 0.2167 3.5092 179 2766 96.00 0.2112 0.1941 3.7799 153 2697 93.00 0.1944 0.1908 4.1600 155 2857 98.00 0.1870 0.1878 4.7611 158 2884 99.00 0.2039 0.1877 5.9952 143 2882 98.00 0.1799 0.1945 39.9135 146 2861 95.00 2.23 39.91 4X1H 193355 57205 0.026 1 56.7 3.4 96 0.85 2.23 2.29 1.2 1 2.5 92 refinement PHENIX (phenix.refine: dev_1839) data scaling XDS data scaling Aimless phasing PHASER Opsin/G(alpha) peptide complex stabilized by nonyl-glucoside 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N 6 N N 7 N N 7 N N A GLU 33 A GLU 33 HELX_P A HIS 65 A HIS 65 1 AA1 33 A LYS 66 A LYS 66 HELX_P A ARG 69 A ARG 69 5 AA2 4 A THR 70 A THR 70 HELX_P A LEU 72 A LEU 72 5 AA3 3 A ASN 73 A ASN 73 HELX_P A GLY 90 A GLY 90 1 AA4 18 A GLY 90 A GLY 90 HELX_P A LEU 99 A LEU 99 1 AA5 10 A PHE 105 A PHE 105 HELX_P A LYS 141 A LYS 141 1 AA6 37 A GLY 149 A GLY 149 HELX_P A ALA 169 A ALA 169 1 AA7 21 A PRO 170 A PRO 170 HELX_P A VAL 173 A VAL 173 5 AA8 4 A HIS 195 A HIS 195 HELX_P A THR 198 A THR 198 5 AA9 4 A ASN 199 A ASN 199 HELX_P A HIS 211 A HIS 211 1 AB1 13 A PHE 212 A PHE 212 HELX_P A GLN 236 A GLN 236 1 AB2 25 A SER 240 A SER 240 HELX_P A HIS 278 A HIS 278 1 AB3 39 A GLY 284 A GLY 284 HELX_P A THR 297 A THR 297 1 AB4 14 A THR 297 A THR 297 HELX_P A ILE 307 A ILE 307 1 AB5 11 A ASN 310 A ASN 310 HELX_P A CYS 322 A CYS 322 1 AB6 13 C LEU 341 B LEU 2 HELX_P C CYS 347 B CYS 8 1 AB7 7 disulf 2.037 A CYS 110 A SG CYS 110 1_555 A CYS 187 A SG CYS 187 1_555 covale 1.442 one N-Glycosylation A ASN 2 A ND2 ASN 2 1_555 D NAG 1 D C1 NAG 1_555 covale 1.443 one N-Glycosylation A ASN 15 A ND2 ASN 15 1_555 B NAG 1 C C1 NAG 1_555 covale 1.767 one A CYS 322 A SG CYS 322 1_555 A PLM 1322 G C1 PLM 1_555 covale 1.767 one A CYS 323 A SG CYS 323 1_555 A PLM 1323 H C1 PLM 1_555 covale 1.442 both B NAG 1 C O4 NAG 1_555 B NAG 2 C C1 NAG 1_555 covale 1.462 both B NAG 2 C O4 NAG 1_555 B BMA 3 C C1 BMA 1_555 covale 1.465 both B BMA 3 C O2 BMA 1_555 B BMA 4 C C1 BMA 1_555 covale 1.439 both D NAG 1 D O3 NAG 1_555 D NAG 2 D C1 NAG 1_555 SIGNALING PROTEIN rhodopsin, GPCR, membrane protein, SIGNALING PROTEIN OPSD_BOVIN UNP 1 1 P02699 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT LCCGKNPLGDDEASTTVSKTETSQVAPA 4X1H PDB 2 1 4X1H 1 348 4X1H 1 348 P02699 A 1 1 348 340 350 4X1H 340 350 4X1H C 2 1 11 2 2 anti-parallel anti-parallel A THR 4 A THR 4 A GLY 6 A GLY 6 A PHE 9 A PHE 9 A VAL 11 A VAL 11 A TYR 178 A TYR 178 A GLU 181 A GLU 181 A SER 186 A SER 186 A ILE 189 A ILE 189 155 H 3 2