0.004130
0.002384
0.000000
0.000000
0.004769
0.000000
0.000000
0.000000
0.009114
0.00000
0.00000
0.00000
Blankenship, E.
Lodowski, D.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
242.136
242.136
109.721
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
beta-D-mannose; D-mannose; mannose
D-saccharide, beta linking
C15 H30 O6
306.395
n
nonyl beta-D-glucopyranoside
Beta-NONYLGLUCOSIDE; nonyl beta-D-glucoside; nonyl D-glucoside; nonyl glucoside
D-saccharide
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C16 H32 O2
256.424
PALMITIC ACID
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
S
C
N
76
S
C
N
77
S
C
N
78
R
C
N
79
N
C
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
R
C
N
99
R
C
N
100
S
C
N
101
S
C
N
102
R
C
N
103
N
C
N
104
N
C
N
105
N
C
N
106
N
C
N
107
N
C
N
108
N
C
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
C
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
R
C
N
151
N
C
N
152
N
O
N
153
N
C
N
154
N
S
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
N
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
O
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
Y
217
N
C
Y
218
N
N
Y
219
N
C
Y
220
N
C
Y
221
N
N
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
S
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
N
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
S
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
R
C
N
326
R
C
N
327
R
C
N
328
S
C
N
329
R
C
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
N
N
334
N
O
N
335
N
O
N
336
N
O
N
337
N
O
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
C
N
379
N
O
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
C
N
385
N
C
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
C
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
N
433
N
C
N
434
N
C
N
435
N
O
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
N
N
446
S
C
N
447
N
C
N
448
N
O
N
449
N
C
N
450
N
O
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
N
N
460
S
C
N
461
N
C
N
462
N
O
N
463
R
C
N
464
N
O
N
465
N
C
N
466
N
O
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
N
N
477
S
C
N
478
N
C
N
479
N
O
N
480
N
C
Y
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
N
Y
485
N
C
Y
486
N
C
Y
487
N
C
Y
488
N
C
Y
489
N
C
N
490
N
O
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
N
N
504
S
C
N
505
N
C
N
506
N
O
N
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
C
Y
512
N
C
Y
513
N
C
N
514
N
O
N
515
N
O
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
N
N
528
S
C
N
529
N
C
N
530
N
O
N
531
N
C
N
532
N
C
N
533
N
C
N
534
N
O
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
Y
215
N
sing
Y
216
N
doub
Y
217
N
doub
N
218
N
sing
Y
219
N
sing
N
220
N
sing
Y
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
Y
353
N
doub
Y
354
N
sing
Y
355
N
sing
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
doub
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
doub
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
Y
471
N
doub
Y
472
N
sing
Y
473
N
sing
N
474
N
sing
Y
475
N
doub
Y
476
N
sing
Y
477
N
sing
N
478
N
sing
Y
479
N
sing
Y
480
N
doub
N
481
N
sing
Y
482
N
doub
N
483
N
sing
Y
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
doub
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
Y
499
N
doub
Y
500
N
sing
Y
501
N
sing
N
502
N
sing
Y
503
N
doub
N
504
N
sing
Y
505
N
doub
N
506
N
sing
Y
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
doub
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
UK
Structure
STRUE6
2005
0969-2126
23
2358
2364
10.1016/j.str.2015.09.015
26526852
The High-Resolution Structure of Activated Opsin Reveals a Conserved Solvent Network in the Transmembrane Region Essential for Activation.
2015
10.2210/pdb4x1h/pdb
pdb_00004x1h
100
1
PIXEL
2014-08-07
PSI PILATUS 6M
CRYO-COOLED SI(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97920
1.0
24-ID-C
APS
0.97920
SYNCHROTRON
APS BEAMLINE 24-ID-C
39031.457
Rhodopsin
1
nat
polymer
1224.447
C-terminal derived peptide of guanine nucleotide-binding protein G(t) subunit alpha-1
1
syn
polymer
748.682
beta-D-mannopyranose-(1-2)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
306.395
nonyl beta-D-glucopyranoside
2
syn
non-polymer
256.424
PALMITIC ACID
2
syn
non-polymer
18.015
water
65
nat
water
no
no
MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA
VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT
WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES
ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT
LCCGKNPLGDDEASTTVSKTETSQVAPA
MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA
VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT
WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES
ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT
LCCGKNPLGDDEASTTVSKTETSQVAPA
A
polypeptide(L)
no
no
VLEDLKSCGLF
VLEDLKSCGLF
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bovine
sample
1
348
9913
Bos taurus
retina
VAPOR DIFFUSION, SITTING DROP
6.0
3.1M ammonium sulfate, 100mM citrate
277
citation
pdbx_audit_support
pdbx_struct_oper_list
software
pdbx_audit_support
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_unobs_or_zero_occ_atoms
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Database references
Author supporting evidence
Database references
Derived calculations
Refinement description
Author supporting evidence
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Derived calculations
Refinement description
Structure summary
1
0
2015-11-04
1
1
2015-11-18
1
2
2015-12-16
1
3
2017-09-06
1
4
2017-11-22
1
5
2019-12-11
2
0
2020-07-29
2
1
2023-09-27
_citation.journal_id_CSD
_pdbx_audit_support.funding_organization
_pdbx_struct_oper_list.symmetry_operation
_software.classification
_pdbx_audit_support.funding_organization
_atom_site.auth_asym_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
United States
National Institutes of Health/National Eye Institute (NIH/NEI)
EY019718
A
NAG
401
n
B
NAG
1
A
NAG
402
n
B
NAG
2
A
BMA
403
n
B
BMA
3
A
BMA
404
n
B
BMA
4
A
NAG
405
n
D
NAG
1
A
NAG
406
n
D
NAG
2
DManpb
b-D-mannopyranose
b-D-Manp
Man
b-nonylglucoside
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
N
RCSB
Y
RCSB
2014-11-24
REL
REL
oligosaccharide
oligosaccharide
DManpb1-2DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2-2/a4-b1_b4-c1_c2-d1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(2+1)][b-D-Manp]{}}}}}
3
PDB-CARE
LINUCS
DGlcpNAcb1-3DGlcpNAcb1-
4
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a3-b1
4
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(3+1)][b-D-GlcpNAc]{}}}
4
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
3
O1
HO4
sing
C1
O4
BMA
NAG
3
2
3
O1
HO4
sing
C1
O2
BMA
BMA
4
3
3
O1
HO2
sing
C1
O3
NAG
NAG
2
1
4
O1
HO3
sing
n
n
n
n
n
n
BNG
nonyl beta-D-glucopyranoside
PLM
PALMITIC ACID
HOH
water
9913
Bos taurus
sample
1
11
The C-terminal derived peptide of guanine nucleotide-binding protein G(t) is derived from 340-350 positions in the transducin alpha subunit utilizing a phage display library derived from the C terminal region of transducin (Aris, L, et al 2001) with sequence "IKENLKDCGLF". The construct in this structure has the following sequence: "VLEDLKSCGLF." Hence there are the following mutations I340V, K341L, N342D, and D346S.
3CAP
PDB ENTRY 3CAP
PDB
experimental model
BNG
407
5
BNG
BNG
407
A
BNG
410
5
BNG
BNG
410
A
PLM
1322
6
PLM
PLM
1322
A
PLM
1323
6
PLM
PLM
1323
A
HOH
501
7
HOH
HOH
501
A
HOH
502
7
HOH
HOH
502
A
HOH
503
7
HOH
HOH
503
A
HOH
504
7
HOH
HOH
504
A
HOH
505
7
HOH
HOH
505
A
HOH
506
7
HOH
HOH
506
A
HOH
507
7
HOH
HOH
507
A
HOH
508
7
HOH
HOH
508
A
HOH
509
7
HOH
HOH
509
A
HOH
510
7
HOH
HOH
510
A
HOH
511
7
HOH
HOH
511
A
HOH
512
7
HOH
HOH
512
A
HOH
513
7
HOH
HOH
513
A
HOH
514
7
HOH
HOH
514
A
HOH
515
7
HOH
HOH
515
A
HOH
516
7
HOH
HOH
516
A
HOH
517
7
HOH
HOH
517
A
HOH
518
7
HOH
HOH
518
A
HOH
519
7
HOH
HOH
519
A
HOH
520
7
HOH
HOH
520
A
HOH
521
7
HOH
HOH
521
A
HOH
522
7
HOH
HOH
522
A
HOH
523
7
HOH
HOH
523
A
HOH
524
7
HOH
HOH
524
A
HOH
525
7
HOH
HOH
525
A
HOH
526
7
HOH
HOH
526
A
HOH
527
7
HOH
HOH
527
A
HOH
528
7
HOH
HOH
528
A
HOH
529
7
HOH
HOH
529
A
HOH
530
7
HOH
HOH
530
A
HOH
531
7
HOH
HOH
531
A
HOH
532
7
HOH
HOH
532
A
HOH
533
7
HOH
HOH
533
A
HOH
534
7
HOH
HOH
534
A
HOH
535
7
HOH
HOH
535
A
HOH
536
7
HOH
HOH
536
A
HOH
537
7
HOH
HOH
537
A
HOH
538
7
HOH
HOH
538
A
HOH
539
7
HOH
HOH
539
A
HOH
540
7
HOH
HOH
540
A
HOH
541
7
HOH
HOH
541
A
HOH
542
7
HOH
HOH
542
A
HOH
543
7
HOH
HOH
543
A
HOH
544
7
HOH
HOH
544
A
HOH
545
7
HOH
HOH
545
A
HOH
546
7
HOH
HOH
546
A
HOH
547
7
HOH
HOH
547
A
HOH
548
7
HOH
HOH
548
A
HOH
549
7
HOH
HOH
549
A
HOH
550
7
HOH
HOH
550
A
HOH
551
7
HOH
HOH
551
A
HOH
552
7
HOH
HOH
552
A
HOH
553
7
HOH
HOH
553
A
HOH
554
7
HOH
HOH
554
A
HOH
555
7
HOH
HOH
555
A
HOH
556
7
HOH
HOH
556
A
HOH
557
7
HOH
HOH
557
A
HOH
558
7
HOH
HOH
558
A
HOH
559
7
HOH
HOH
559
A
HOH
560
7
HOH
HOH
560
A
HOH
561
7
HOH
HOH
561
A
HOH
562
7
HOH
HOH
562
A
HOH
563
7
HOH
HOH
563
A
HOH
501
7
HOH
HOH
501
C
HOH
502
7
HOH
HOH
502
C
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
GLY
3
n
3
GLY
3
A
THR
4
n
4
THR
4
A
GLU
5
n
5
GLU
5
A
GLY
6
n
6
GLY
6
A
PRO
7
n
7
PRO
7
A
ASN
8
n
8
ASN
8
A
PHE
9
n
9
PHE
9
A
TYR
10
n
10
TYR
10
A
VAL
11
n
11
VAL
11
A
PRO
12
n
12
PRO
12
A
PHE
13
n
13
PHE
13
A
SER
14
n
14
SER
14
A
ASN
15
n
15
ASN
15
A
LYS
16
n
16
LYS
16
A
THR
17
n
17
THR
17
A
GLY
18
n
18
GLY
18
A
VAL
19
n
19
VAL
19
A
VAL
20
n
20
VAL
20
A
ARG
21
n
21
ARG
21
A
SER
22
n
22
SER
22
A
PRO
23
n
23
PRO
23
A
PHE
24
n
24
PHE
24
A
GLU
25
n
25
GLU
25
A
ALA
26
n
26
ALA
26
A
PRO
27
n
27
PRO
27
A
GLN
28
n
28
GLN
28
A
TYR
29
n
29
TYR
29
A
TYR
30
n
30
TYR
30
A
LEU
31
n
31
LEU
31
A
ALA
32
n
32
ALA
32
A
GLU
33
n
33
GLU
33
A
PRO
34
n
34
PRO
34
A
TRP
35
n
35
TRP
35
A
GLN
36
n
36
GLN
36
A
PHE
37
n
37
PHE
37
A
SER
38
n
38
SER
38
A
MET
39
n
39
MET
39
A
LEU
40
n
40
LEU
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
TYR
43
n
43
TYR
43
A
MET
44
n
44
MET
44
A
PHE
45
n
45
PHE
45
A
LEU
46
n
46
LEU
46
A
LEU
47
n
47
LEU
47
A
ILE
48
n
48
ILE
48
A
MET
49
n
49
MET
49
A
LEU
50
n
50
LEU
50
A
GLY
51
n
51
GLY
51
A
PHE
52
n
52
PHE
52
A
PRO
53
n
53
PRO
53
A
ILE
54
n
54
ILE
54
A
ASN
55
n
55
ASN
55
A
PHE
56
n
56
PHE
56
A
LEU
57
n
57
LEU
57
A
THR
58
n
58
THR
58
A
LEU
59
n
59
LEU
59
A
TYR
60
n
60
TYR
60
A
VAL
61
n
61
VAL
61
A
THR
62
n
62
THR
62
A
VAL
63
n
63
VAL
63
A
GLN
64
n
64
GLN
64
A
HIS
65
n
65
HIS
65
A
LYS
66
n
66
LYS
66
A
LYS
67
n
67
LYS
67
A
LEU
68
n
68
LEU
68
A
ARG
69
n
69
ARG
69
A
THR
70
n
70
THR
70
A
PRO
71
n
71
PRO
71
A
LEU
72
n
72
LEU
72
A
ASN
73
n
73
ASN
73
A
TYR
74
n
74
TYR
74
A
ILE
75
n
75
ILE
75
A
LEU
76
n
76
LEU
76
A
LEU
77
n
77
LEU
77
A
ASN
78
n
78
ASN
78
A
LEU
79
n
79
LEU
79
A
ALA
80
n
80
ALA
80
A
VAL
81
n
81
VAL
81
A
ALA
82
n
82
ALA
82
A
ASP
83
n
83
ASP
83
A
LEU
84
n
84
LEU
84
A
PHE
85
n
85
PHE
85
A
MET
86
n
86
MET
86
A
VAL
87
n
87
VAL
87
A
PHE
88
n
88
PHE
88
A
GLY
89
n
89
GLY
89
A
GLY
90
n
90
GLY
90
A
PHE
91
n
91
PHE
91
A
THR
92
n
92
THR
92
A
THR
93
n
93
THR
93
A
THR
94
n
94
THR
94
A
LEU
95
n
95
LEU
95
A
TYR
96
n
96
TYR
96
A
THR
97
n
97
THR
97
A
SER
98
n
98
SER
98
A
LEU
99
n
99
LEU
99
A
HIS
100
n
100
HIS
100
A
GLY
101
n
101
GLY
101
A
TYR
102
n
102
TYR
102
A
PHE
103
n
103
PHE
103
A
VAL
104
n
104
VAL
104
A
PHE
105
n
105
PHE
105
A
GLY
106
n
106
GLY
106
A
PRO
107
n
107
PRO
107
A
THR
108
n
108
THR
108
A
GLY
109
n
109
GLY
109
A
CYS
110
n
110
CYS
110
A
ASN
111
n
111
ASN
111
A
LEU
112
n
112
LEU
112
A
GLU
113
n
113
GLU
113
A
GLY
114
n
114
GLY
114
A
PHE
115
n
115
PHE
115
A
PHE
116
n
116
PHE
116
A
ALA
117
n
117
ALA
117
A
THR
118
n
118
THR
118
A
LEU
119
n
119
LEU
119
A
GLY
120
n
120
GLY
120
A
GLY
121
n
121
GLY
121
A
GLU
122
n
122
GLU
122
A
ILE
123
n
123
ILE
123
A
ALA
124
n
124
ALA
124
A
LEU
125
n
125
LEU
125
A
TRP
126
n
126
TRP
126
A
SER
127
n
127
SER
127
A
LEU
128
n
128
LEU
128
A
VAL
129
n
129
VAL
129
A
VAL
130
n
130
VAL
130
A
LEU
131
n
131
LEU
131
A
ALA
132
n
132
ALA
132
A
ILE
133
n
133
ILE
133
A
GLU
134
n
134
GLU
134
A
ARG
135
n
135
ARG
135
A
TYR
136
n
136
TYR
136
A
VAL
137
n
137
VAL
137
A
VAL
138
n
138
VAL
138
A
VAL
139
n
139
VAL
139
A
CYS
140
n
140
CYS
140
A
LYS
141
n
141
LYS
141
A
PRO
142
n
142
PRO
142
A
MET
143
n
143
MET
143
A
SER
144
n
144
SER
144
A
ASN
145
n
145
ASN
145
A
PHE
146
n
146
PHE
146
A
ARG
147
n
147
ARG
147
A
PHE
148
n
148
PHE
148
A
GLY
149
n
149
GLY
149
A
GLU
150
n
150
GLU
150
A
ASN
151
n
151
ASN
151
A
HIS
152
n
152
HIS
152
A
ALA
153
n
153
ALA
153
A
ILE
154
n
154
ILE
154
A
MET
155
n
155
MET
155
A
GLY
156
n
156
GLY
156
A
VAL
157
n
157
VAL
157
A
ALA
158
n
158
ALA
158
A
PHE
159
n
159
PHE
159
A
THR
160
n
160
THR
160
A
TRP
161
n
161
TRP
161
A
VAL
162
n
162
VAL
162
A
MET
163
n
163
MET
163
A
ALA
164
n
164
ALA
164
A
LEU
165
n
165
LEU
165
A
ALA
166
n
166
ALA
166
A
CYS
167
n
167
CYS
167
A
ALA
168
n
168
ALA
168
A
ALA
169
n
169
ALA
169
A
PRO
170
n
170
PRO
170
A
PRO
171
n
171
PRO
171
A
LEU
172
n
172
LEU
172
A
VAL
173
n
173
VAL
173
A
GLY
174
n
174
GLY
174
A
TRP
175
n
175
TRP
175
A
SER
176
n
176
SER
176
A
ARG
177
n
177
ARG
177
A
TYR
178
n
178
TYR
178
A
ILE
179
n
179
ILE
179
A
PRO
180
n
180
PRO
180
A
GLU
181
n
181
GLU
181
A
GLY
182
n
182
GLY
182
A
MET
183
n
183
MET
183
A
GLN
184
n
184
GLN
184
A
CYS
185
n
185
CYS
185
A
SER
186
n
186
SER
186
A
CYS
187
n
187
CYS
187
A
GLY
188
n
188
GLY
188
A
ILE
189
n
189
ILE
189
A
ASP
190
n
190
ASP
190
A
TYR
191
n
191
TYR
191
A
TYR
192
n
192
TYR
192
A
THR
193
n
193
THR
193
A
PRO
194
n
194
PRO
194
A
HIS
195
n
195
HIS
195
A
GLU
196
n
196
GLU
196
A
GLU
197
n
197
GLU
197
A
THR
198
n
198
THR
198
A
ASN
199
n
199
ASN
199
A
ASN
200
n
200
ASN
200
A
GLU
201
n
201
GLU
201
A
SER
202
n
202
SER
202
A
PHE
203
n
203
PHE
203
A
VAL
204
n
204
VAL
204
A
ILE
205
n
205
ILE
205
A
TYR
206
n
206
TYR
206
A
MET
207
n
207
MET
207
A
PHE
208
n
208
PHE
208
A
VAL
209
n
209
VAL
209
A
VAL
210
n
210
VAL
210
A
HIS
211
n
211
HIS
211
A
PHE
212
n
212
PHE
212
A
ILE
213
n
213
ILE
213
A
ILE
214
n
214
ILE
214
A
PRO
215
n
215
PRO
215
A
LEU
216
n
216
LEU
216
A
ILE
217
n
217
ILE
217
A
VAL
218
n
218
VAL
218
A
ILE
219
n
219
ILE
219
A
PHE
220
n
220
PHE
220
A
PHE
221
n
221
PHE
221
A
CYS
222
n
222
CYS
222
A
TYR
223
n
223
TYR
223
A
GLY
224
n
224
GLY
224
A
GLN
225
n
225
GLN
225
A
LEU
226
n
226
LEU
226
A
VAL
227
n
227
VAL
227
A
PHE
228
n
228
PHE
228
A
THR
229
n
229
THR
229
A
VAL
230
n
230
VAL
230
A
LYS
231
n
231
LYS
231
A
GLU
232
n
232
GLU
232
A
ALA
233
n
233
ALA
233
A
ALA
234
n
234
ALA
234
A
ALA
235
n
235
ALA
235
A
GLN
236
n
236
GLN
236
A
GLN
237
n
237
GLN
237
A
GLN
238
n
238
GLN
238
A
GLU
239
n
239
GLU
239
A
SER
240
n
240
SER
240
A
ALA
241
n
241
ALA
241
A
THR
242
n
242
THR
242
A
THR
243
n
243
THR
243
A
GLN
244
n
244
GLN
244
A
LYS
245
n
245
LYS
245
A
ALA
246
n
246
ALA
246
A
GLU
247
n
247
GLU
247
A
LYS
248
n
248
LYS
248
A
GLU
249
n
249
GLU
249
A
VAL
250
n
250
VAL
250
A
THR
251
n
251
THR
251
A
ARG
252
n
252
ARG
252
A
MET
253
n
253
MET
253
A
VAL
254
n
254
VAL
254
A
ILE
255
n
255
ILE
255
A
ILE
256
n
256
ILE
256
A
MET
257
n
257
MET
257
A
VAL
258
n
258
VAL
258
A
ILE
259
n
259
ILE
259
A
ALA
260
n
260
ALA
260
A
PHE
261
n
261
PHE
261
A
LEU
262
n
262
LEU
262
A
ILE
263
n
263
ILE
263
A
CYS
264
n
264
CYS
264
A
TRP
265
n
265
TRP
265
A
LEU
266
n
266
LEU
266
A
PRO
267
n
267
PRO
267
A
TYR
268
n
268
TYR
268
A
ALA
269
n
269
ALA
269
A
GLY
270
n
270
GLY
270
A
VAL
271
n
271
VAL
271
A
ALA
272
n
272
ALA
272
A
PHE
273
n
273
PHE
273
A
TYR
274
n
274
TYR
274
A
ILE
275
n
275
ILE
275
A
PHE
276
n
276
PHE
276
A
THR
277
n
277
THR
277
A
HIS
278
n
278
HIS
278
A
GLN
279
n
279
GLN
279
A
GLY
280
n
280
GLY
280
A
SER
281
n
281
SER
281
A
ASP
282
n
282
ASP
282
A
PHE
283
n
283
PHE
283
A
GLY
284
n
284
GLY
284
A
PRO
285
n
285
PRO
285
A
ILE
286
n
286
ILE
286
A
PHE
287
n
287
PHE
287
A
MET
288
n
288
MET
288
A
THR
289
n
289
THR
289
A
ILE
290
n
290
ILE
290
A
PRO
291
n
291
PRO
291
A
ALA
292
n
292
ALA
292
A
PHE
293
n
293
PHE
293
A
PHE
294
n
294
PHE
294
A
ALA
295
n
295
ALA
295
A
LYS
296
n
296
LYS
296
A
THR
297
n
297
THR
297
A
SER
298
n
298
SER
298
A
ALA
299
n
299
ALA
299
A
VAL
300
n
300
VAL
300
A
TYR
301
n
301
TYR
301
A
ASN
302
n
302
ASN
302
A
PRO
303
n
303
PRO
303
A
VAL
304
n
304
VAL
304
A
ILE
305
n
305
ILE
305
A
TYR
306
n
306
TYR
306
A
ILE
307
n
307
ILE
307
A
MET
308
n
308
MET
308
A
MET
309
n
309
MET
309
A
ASN
310
n
310
ASN
310
A
LYS
311
n
311
LYS
311
A
GLN
312
n
312
GLN
312
A
PHE
313
n
313
PHE
313
A
ARG
314
n
314
ARG
314
A
ASN
315
n
315
ASN
315
A
CYS
316
n
316
CYS
316
A
MET
317
n
317
MET
317
A
VAL
318
n
318
VAL
318
A
THR
319
n
319
THR
319
A
THR
320
n
320
THR
320
A
LEU
321
n
321
LEU
321
A
CYS
322
n
322
CYS
322
A
CYS
323
n
323
CYS
323
A
GLY
324
n
324
GLY
324
A
LYS
325
n
325
LYS
325
A
ASN
326
n
326
ASN
326
A
n
327
327
A
n
328
328
A
n
329
329
A
n
330
330
A
n
331
331
A
n
332
332
A
n
333
333
A
n
334
334
A
n
335
335
A
n
336
336
A
n
337
337
A
n
338
338
A
n
339
339
A
n
340
340
A
n
341
341
A
n
342
342
A
n
343
343
A
n
344
344
A
n
345
345
A
n
346
346
A
n
347
347
A
n
348
348
A
VAL
340
n
1
VAL
340
C
LEU
341
n
2
LEU
341
C
GLU
342
n
3
GLU
342
C
ASP
343
n
4
ASP
343
C
LEU
344
n
5
LEU
344
C
LYS
345
n
6
LYS
345
C
SER
346
n
7
SER
346
C
CYS
347
n
8
CYS
347
C
GLY
348
n
9
GLY
348
C
LEU
349
n
10
LEU
349
C
PHE
350
n
11
PHE
350
C
4.3454
-3.7707
-1.1687
9.4111
5.4167
3.6838
-0.0899
0.1805
-0.1110
0.4486
0.1161
1.1012
0.6999
-0.2875
-0.0174
0.5952
-0.0511
-0.0094
0.3035
0.1878
0.9137
refined
19.7998
-65.4033
-38.4804
X-RAY DIFFRACTION
1.3209
-0.8568
-0.0239
2.3769
0.1424
1.2240
-0.0543
-0.0749
-0.0358
0.2766
0.0101
-0.3866
0.0365
-0.0135
0.0254
0.3487
0.0085
0.0516
0.2448
0.0714
0.6120
refined
19.7868
-38.1699
-40.1027
X-RAY DIFFRACTION
5.8354
0.4622
0.6078
2.7707
0.1150
4.3955
-0.3995
-0.6658
0.4105
0.7293
0.1418
0.6164
-0.5508
-0.2201
0.2163
0.6098
0.0961
0.1178
0.3557
0.0222
0.4004
refined
7.5914
-25.9207
-24.6398
X-RAY DIFFRACTION
2.9529
-1.8031
-2.2404
3.2721
2.8112
2.6611
-0.6457
-0.1799
-0.5955
0.6260
0.2994
0.2285
0.3123
-0.2001
0.2338
0.6307
0.1155
0.1258
0.3554
0.1674
0.7749
refined
18.7642
-51.7568
-31.3877
X-RAY DIFFRACTION
3.8289
-0.9699
-1.2147
0.4076
0.8776
2.8306
-0.2181
-0.3094
-0.9232
0.3426
0.1043
0.0796
0.8015
-0.1626
-0.0413
0.7197
0.0188
0.2001
0.4380
0.1965
0.8706
refined
10.2418
-52.5469
-29.1612
X-RAY DIFFRACTION
3.9705
-4.3828
3.3223
7.7854
-5.8634
6.3582
-0.3453
-0.3235
0.4224
0.4063
0.3585
0.7425
-0.3517
-0.7067
-0.0694
0.3819
0.0600
0.1538
0.4732
-0.0006
0.7845
refined
-8.5810
-25.4130
-36.9252
X-RAY DIFFRACTION
5.7948
-5.0213
1.2670
6.4099
-1.1336
2.9001
-0.1855
-0.1389
0.0704
0.0477
0.1240
-0.2363
0.1319
-0.3690
0.0838
0.3277
-0.0022
0.1161
0.3766
-0.0394
0.6612
refined
-0.2040
-35.4983
-42.5854
X-RAY DIFFRACTION
0.7960
0.3129
1.2797
0.2944
0.2059
2.5966
-0.0355
-0.1077
-1.1566
0.8417
0.0154
0.3736
1.0210
0.0694
-0.1585
0.7080
0.0391
0.1933
0.3519
0.0452
1.1024
refined
10.7290
-46.3657
-43.7458
X-RAY DIFFRACTION
5.7608
6.3862
-4.4993
8.9413
-2.4053
9.0282
0.1532
0.0768
0.1745
-0.0388
0.1251
0.0566
-0.3562
0.0972
-0.3973
0.5237
0.0914
0.0550
0.3421
0.0746
0.8125
refined
14.6797
-16.9530
-48.2677
X-RAY DIFFRACTION
9.9619
-2.9519
4.9010
4.1923
-0.0929
2.9687
-0.2639
0.3075
0.8262
0.9278
0.2487
0.9118
-1.4576
-0.7778
0.1742
0.6174
0.1955
0.1419
0.5003
0.1375
0.8582
refined
-0.6051
-14.9053
-38.9274
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resid 1 through 16 )
X-RAY DIFFRACTION
2
chain 'A' and (resid 17 through 140 )
X-RAY DIFFRACTION
3
chain 'A' and (resid 141 through 168 )
X-RAY DIFFRACTION
4
chain 'A' and (resid 169 through 185 )
X-RAY DIFFRACTION
5
chain 'A' and (resid 186 through 212 )
X-RAY DIFFRACTION
6
chain 'A' and (resid 213 through 240 )
X-RAY DIFFRACTION
7
chain 'A' and (resid 241 through 277 )
X-RAY DIFFRACTION
8
chain 'A' and (resid 278 through 306 )
X-RAY DIFFRACTION
9
chain 'A' and (resid 307 through 326 )
X-RAY DIFFRACTION
10
chain 'C' and (resid 340 through 350 )
author_and_software_defined_assembly
PISA
2
dimeric
5130
27
17540
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
4
A
N
THR
4
A
O
VAL
11
A
O
VAL
11
A
N
GLU
181
A
N
GLU
181
A
O
SER
186
A
O
SER
186
1
A
C7
PLM
1322
G
C7
PLM
1
1
N
1
A
C8
PLM
1322
G
C8
PLM
1
1
N
1
A
C9
PLM
1322
G
C9
PLM
1
1
N
1
A
CA
PLM
1322
G
CA
PLM
1
1
N
1
A
CB
PLM
1322
G
CB
PLM
1
1
N
1
A
CC
PLM
1322
G
CC
PLM
1
1
N
1
A
CD
PLM
1322
G
CD
PLM
1
1
N
1
A
CE
PLM
1322
G
CE
PLM
1
1
N
1
A
CF
PLM
1322
G
CF
PLM
1
1
N
1
A
CG
PLM
1322
G
CG
PLM
1
1
N
1
A
PRO
327
A
PRO
327
1
Y
1
A
LEU
328
A
LEU
328
1
Y
1
A
GLY
329
A
GLY
329
1
Y
1
A
ASP
330
A
ASP
330
1
Y
1
A
ASP
331
A
ASP
331
1
Y
1
A
GLU
332
A
GLU
332
1
Y
1
A
ALA
333
A
ALA
333
1
Y
1
A
SER
334
A
SER
334
1
Y
1
A
THR
335
A
THR
335
1
Y
1
A
THR
336
A
THR
336
1
Y
1
A
VAL
337
A
VAL
337
1
Y
1
A
SER
338
A
SER
338
1
Y
1
A
LYS
339
A
LYS
339
1
Y
1
A
THR
340
A
THR
340
1
Y
1
A
GLU
341
A
GLU
341
1
Y
1
A
THR
342
A
THR
342
1
Y
1
A
SER
343
A
SER
343
1
Y
1
A
GLN
344
A
GLN
344
1
Y
1
A
VAL
345
A
VAL
345
1
Y
1
A
ALA
346
A
ALA
346
1
Y
1
A
PRO
347
A
PRO
347
1
Y
1
A
ALA
348
A
ALA
348
1
Y
1
A
ASN
2
72.81
-12.33
1
A
GLN
28
-102.49
43.13
1
A
SER
176
62.22
-160.66
1
A
PHE
212
-139.53
-56.53
1
A
GLN
237
-149.30
54.07
1
A
HIS
278
-111.81
67.05
0.2285
0.2171
0.2177
2.290
39.907
2554
50642
5.04
91.84
0.26
Derived from 3CAP, extended to higher resolution
1
FREE R-VALUE
1.34
MOLECULAR REPLACEMENT
29.09
0.90
1.11
PDB ENTRY 3CAP
ML
FLAT BULK SOLVENT MODEL
2.290
39.907
65
2886
144
0
2677
0.004
2972
0.878
4046
13.420
1082
0.036
465
0.004
488
0.3405
0.3672
2.3341
117
2346
81.00
0.3425
0.3386
2.3817
131
2577
89.00
0.3743
0.3369
2.4335
146
2587
90.00
0.3474
0.3164
2.4901
137
2603
90.00
0.2726
0.2815
2.5524
155
2574
90.00
0.2908
0.2780
2.6214
121
2607
90.00
0.3164
0.2852
2.6985
114
2613
89.00
0.3427
0.2629
2.7856
135
2496
86.00
0.2729
0.2370
2.8851
125
2515
85.00
0.2713
0.2262
3.0006
139
2703
94.00
0.2493
0.2213
3.1371
158
2745
95.00
0.2432
0.2157
3.3024
142
2775
96.00
0.2288
0.2167
3.5092
179
2766
96.00
0.2112
0.1941
3.7799
153
2697
93.00
0.1944
0.1908
4.1600
155
2857
98.00
0.1870
0.1878
4.7611
158
2884
99.00
0.2039
0.1877
5.9952
143
2882
98.00
0.1799
0.1945
39.9135
146
2861
95.00
2.23
39.91
4X1H
193355
57205
0.026
1
56.7
3.4
96
0.85
2.23
2.29
1.2
1
2.5
92
refinement
PHENIX
(phenix.refine: dev_1839)
data scaling
XDS
data scaling
Aimless
phasing
PHASER
Opsin/G(alpha) peptide complex stabilized by nonyl-glucoside
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
6
N
N
7
N
N
7
N
N
A
GLU
33
A
GLU
33
HELX_P
A
HIS
65
A
HIS
65
1
AA1
33
A
LYS
66
A
LYS
66
HELX_P
A
ARG
69
A
ARG
69
5
AA2
4
A
THR
70
A
THR
70
HELX_P
A
LEU
72
A
LEU
72
5
AA3
3
A
ASN
73
A
ASN
73
HELX_P
A
GLY
90
A
GLY
90
1
AA4
18
A
GLY
90
A
GLY
90
HELX_P
A
LEU
99
A
LEU
99
1
AA5
10
A
PHE
105
A
PHE
105
HELX_P
A
LYS
141
A
LYS
141
1
AA6
37
A
GLY
149
A
GLY
149
HELX_P
A
ALA
169
A
ALA
169
1
AA7
21
A
PRO
170
A
PRO
170
HELX_P
A
VAL
173
A
VAL
173
5
AA8
4
A
HIS
195
A
HIS
195
HELX_P
A
THR
198
A
THR
198
5
AA9
4
A
ASN
199
A
ASN
199
HELX_P
A
HIS
211
A
HIS
211
1
AB1
13
A
PHE
212
A
PHE
212
HELX_P
A
GLN
236
A
GLN
236
1
AB2
25
A
SER
240
A
SER
240
HELX_P
A
HIS
278
A
HIS
278
1
AB3
39
A
GLY
284
A
GLY
284
HELX_P
A
THR
297
A
THR
297
1
AB4
14
A
THR
297
A
THR
297
HELX_P
A
ILE
307
A
ILE
307
1
AB5
11
A
ASN
310
A
ASN
310
HELX_P
A
CYS
322
A
CYS
322
1
AB6
13
C
LEU
341
B
LEU
2
HELX_P
C
CYS
347
B
CYS
8
1
AB7
7
disulf
2.037
A
CYS
110
A
SG
CYS
110
1_555
A
CYS
187
A
SG
CYS
187
1_555
covale
1.442
one
N-Glycosylation
A
ASN
2
A
ND2
ASN
2
1_555
D
NAG
1
D
C1
NAG
1_555
covale
1.443
one
N-Glycosylation
A
ASN
15
A
ND2
ASN
15
1_555
B
NAG
1
C
C1
NAG
1_555
covale
1.767
one
A
CYS
322
A
SG
CYS
322
1_555
A
PLM
1322
G
C1
PLM
1_555
covale
1.767
one
A
CYS
323
A
SG
CYS
323
1_555
A
PLM
1323
H
C1
PLM
1_555
covale
1.442
both
B
NAG
1
C
O4
NAG
1_555
B
NAG
2
C
C1
NAG
1_555
covale
1.462
both
B
NAG
2
C
O4
NAG
1_555
B
BMA
3
C
C1
BMA
1_555
covale
1.465
both
B
BMA
3
C
O2
BMA
1_555
B
BMA
4
C
C1
BMA
1_555
covale
1.439
both
D
NAG
1
D
O3
NAG
1_555
D
NAG
2
D
C1
NAG
1_555
SIGNALING PROTEIN
rhodopsin, GPCR, membrane protein, SIGNALING PROTEIN
OPSD_BOVIN
UNP
1
1
P02699
MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA
VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT
WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES
ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT
LCCGKNPLGDDEASTTVSKTETSQVAPA
4X1H
PDB
2
1
4X1H
1
348
4X1H
1
348
P02699
A
1
1
348
340
350
4X1H
340
350
4X1H
C
2
1
11
2
2
anti-parallel
anti-parallel
A
THR
4
A
THR
4
A
GLY
6
A
GLY
6
A
PHE
9
A
PHE
9
A
VAL
11
A
VAL
11
A
TYR
178
A
TYR
178
A
GLU
181
A
GLU
181
A
SER
186
A
SER
186
A
ILE
189
A
ILE
189
155
H 3 2