0.026446
0.000000
0.004777
0.000000
0.019616
0.000000
0.000000
0.000000
0.017645
0.00000
0.00000
0.00000
Grant, R.A.
Qian, W.-J.
Yaffe, M.B.
Burke, T.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
100.24
90.00
37.813
50.979
57.590
C13 H23 N O4
257.326
n
(4R)-1-acetyl-4-(hexyloxy)-L-proline
(4R)-1-acetyl-4-(hex-5-en-1-yloxy)-L-proline (bound form)
L-peptide linking
C20 H29 N3 O2
343.463
n
3-(8-phenyloctyl)-L-histidine
L-peptide linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C4 H10 N O6 P
199.099
n
PHOSPHOTHREONINE
PHOSPHONOTHREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
C
N
3
N
C
N
4
N
C
N
5
N
C
N
6
N
O
N
7
S
C
N
8
N
C
N
9
N
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
R
C
N
14
N
O
N
15
N
C
N
16
N
C
N
17
N
C
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
C
N
43
N
N
N
44
N
O
N
45
S
C
N
46
N
C
Y
47
N
C
N
48
N
C
N
49
N
C
N
50
N
C
N
51
N
C
N
52
N
C
N
53
N
C
N
54
N
C
N
55
N
C
Y
56
N
C
Y
57
N
C
Y
58
N
C
Y
59
N
C
Y
60
N
C
Y
61
N
C
Y
62
N
N
Y
63
N
C
Y
64
N
C
Y
65
N
N
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
N
N
117
N
C
N
118
N
N
N
119
N
N
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
N
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
N
158
N
C
N
159
N
O
N
160
N
O
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
R
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
S
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
N
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
O
N
211
N
O
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
N
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
Y
237
N
C
Y
238
N
N
Y
239
N
C
Y
240
N
C
Y
241
N
N
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
S
C
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
N
305
N
C
N
306
N
C
N
307
N
C
N
308
N
N
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
C
N
331
N
S
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
N
376
N
C
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
O
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
R
C
N
407
N
O
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
R
C
N
422
N
C
N
423
N
O
N
424
N
P
N
425
N
O
N
426
N
O
N
427
N
O
N
428
N
C
N
429
N
O
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
N
Y
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
N
N
469
S
C
N
470
N
C
N
471
N
O
N
472
N
C
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
N
479
N
O
N
480
N
O
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
N
N
493
S
C
N
494
N
C
N
495
N
O
N
496
N
C
N
497
N
C
N
498
N
C
N
499
N
O
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
doub
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
Y
53
N
doub
Y
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
Y
80
N
doub
Y
81
N
sing
Y
82
N
doub
N
83
N
sing
Y
84
N
sing
N
85
N
sing
Y
86
N
doub
N
87
N
sing
Y
88
N
sing
N
89
N
sing
N
90
N
sing
Y
91
N
sing
Y
92
N
sing
N
93
N
sing
Y
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
Y
236
N
sing
Y
237
N
doub
Y
238
N
doub
N
239
N
sing
Y
240
N
sing
N
241
N
sing
Y
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
doub
N
351
N
sing
Y
352
N
doub
N
353
N
sing
Y
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
doub
Y
441
N
sing
Y
442
N
sing
N
443
N
sing
Y
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
doub
N
448
N
sing
Y
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
Y
464
N
doub
Y
465
N
sing
Y
466
N
sing
N
467
N
sing
Y
468
N
doub
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
doub
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
US
Biopolymers
BIPMAA
0161
1079-0282
104
663
673
10.1002/bip.22698
26152807
Neighbor-directed histidine N ( tau )-alkylation: A route to imidazolium-containing phosphopeptide macrocycles.
2015
10.2210/pdb4x9r/pdb
pdb_00004x9r
100
1
PIXEL
2013-11-30
PSI PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
0.97950
1.0
24-ID-C
APS
0.97950
SYNCHROTRON
APS BEAMLINE 24-ID-C
27285.158
Serine/threonine-protein kinase PLK1
2.7.11.21
Polo-box domain residues 371-603
1
man
polymer
962.101
Phosphopeptide macrocycle 3B
1
syn
polymer
18.015
water
189
nat
water
Polo-like kinase 1,PLK-1,Serine/threonine-protein kinase 13,STPK13
1-(1-methylethyl)-1H-benzimidazole-2-sulfonic acid
no
no
GAHMDCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYN
DGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLS
NGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRSASNRLKAS
GAHMDCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYN
DGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLS
NGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRSASNRLKAS
A
polypeptide(L)
no
yes
(4L0)L(56A)S(TPO)(NH2)
XLHSTX
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
237
PLK1, PLK
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
2.00
38.56
VAPOR DIFFUSION, HANGING DROP
8
Frozen stocks of protein at 37 mg/mL in 10 mM TRIS pH8, 0.5 M NaCl, 10 mM DTT were thawed and diluted to 10 mg/ml with the same buffer. Complexes with each of three macrocycle compounds (3b, 3c and 4b) were prepared by adding 100 mM stocks of the macrocycle in DMSO directly to the diluted protein to achieve a final concentration of 1 mM. Crystals were grown by hanging drop vapor diffusion, with drops made by mixing equal volumes of protein-macrocycle complex and well solution containing 2-6% PEG-3350. Crystals were cryo-protected by quickly dipping in a solution of 37.5% ethylene glycol in well solution and frozen in liquid nitrogen
291
pdbx_audit_support
pdbx_struct_oper_list
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
atom_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Database references
Source and taxonomy
Author supporting evidence
Derived calculations
Author supporting evidence
Data collection
Database references
Refinement description
Atomic model
Data collection
1
0
2015-07-29
1
1
2016-01-27
1
2
2017-09-20
1
3
2019-12-04
1
4
2023-09-27
2
0
2023-11-15
_pdbx_audit_support.funding_organization
_pdbx_struct_oper_list.symmetry_operation
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.label_atom_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
United States
National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)
ES015339
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM68762
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM103403
United States
Department of Energy (DOE, United States)
DE-AC02-06CH11357
Same protein complexed with a different ligand
N
RCSB
Y
RCSB
2014-12-11
REL
REL
HOH
water
32630
synthetic construct
sample
1
6
3RQ7
PDB
experimental model
HOH
91
3
HOH
HOH
801
A
HOH
124
3
HOH
HOH
802
A
HOH
113
3
HOH
HOH
803
A
HOH
215
3
HOH
HOH
804
A
HOH
131
3
HOH
HOH
805
A
HOH
107
3
HOH
HOH
806
A
HOH
209
3
HOH
HOH
807
A
HOH
183
3
HOH
HOH
808
A
HOH
82
3
HOH
HOH
809
A
HOH
127
3
HOH
HOH
810
A
HOH
123
3
HOH
HOH
811
A
HOH
171
3
HOH
HOH
812
A
HOH
206
3
HOH
HOH
813
A
HOH
169
3
HOH
HOH
814
A
HOH
220
3
HOH
HOH
815
A
HOH
154
3
HOH
HOH
816
A
HOH
152
3
HOH
HOH
817
A
HOH
126
3
HOH
HOH
818
A
HOH
55
3
HOH
HOH
819
A
HOH
146
3
HOH
HOH
820
A
HOH
137
3
HOH
HOH
821
A
HOH
37
3
HOH
HOH
822
A
HOH
182
3
HOH
HOH
823
A
HOH
76
3
HOH
HOH
824
A
HOH
153
3
HOH
HOH
825
A
HOH
60
3
HOH
HOH
826
A
HOH
18
3
HOH
HOH
827
A
HOH
114
3
HOH
HOH
828
A
HOH
189
3
HOH
HOH
829
A
HOH
58
3
HOH
HOH
830
A
HOH
49
3
HOH
HOH
831
A
HOH
144
3
HOH
HOH
832
A
HOH
19
3
HOH
HOH
833
A
HOH
177
3
HOH
HOH
834
A
HOH
120
3
HOH
HOH
835
A
HOH
44
3
HOH
HOH
836
A
HOH
80
3
HOH
HOH
837
A
HOH
112
3
HOH
HOH
838
A
HOH
14
3
HOH
HOH
839
A
HOH
128
3
HOH
HOH
840
A
HOH
12
3
HOH
HOH
841
A
HOH
31
3
HOH
HOH
842
A
HOH
59
3
HOH
HOH
843
A
HOH
199
3
HOH
HOH
844
A
HOH
45
3
HOH
HOH
845
A
HOH
196
3
HOH
HOH
846
A
HOH
217
3
HOH
HOH
847
A
HOH
150
3
HOH
HOH
848
A
HOH
61
3
HOH
HOH
849
A
HOH
22
3
HOH
HOH
850
A
HOH
221
3
HOH
HOH
851
A
HOH
145
3
HOH
HOH
852
A
HOH
5
3
HOH
HOH
853
A
HOH
138
3
HOH
HOH
854
A
HOH
115
3
HOH
HOH
855
A
HOH
89
3
HOH
HOH
856
A
HOH
25
3
HOH
HOH
857
A
HOH
190
3
HOH
HOH
858
A
HOH
172
3
HOH
HOH
859
A
HOH
184
3
HOH
HOH
860
A
HOH
72
3
HOH
HOH
861
A
HOH
214
3
HOH
HOH
862
A
HOH
2
3
HOH
HOH
863
A
HOH
161
3
HOH
HOH
864
A
HOH
27
3
HOH
HOH
865
A
HOH
64
3
HOH
HOH
866
A
HOH
163
3
HOH
HOH
867
A
HOH
88
3
HOH
HOH
868
A
HOH
111
3
HOH
HOH
869
A
HOH
10
3
HOH
HOH
870
A
HOH
197
3
HOH
HOH
871
A
HOH
56
3
HOH
HOH
872
A
HOH
74
3
HOH
HOH
873
A
HOH
134
3
HOH
HOH
874
A
HOH
39
3
HOH
HOH
875
A
HOH
121
3
HOH
HOH
876
A
HOH
11
3
HOH
HOH
877
A
HOH
6
3
HOH
HOH
878
A
HOH
83
3
HOH
HOH
879
A
HOH
30
3
HOH
HOH
880
A
HOH
179
3
HOH
HOH
881
A
HOH
68
3
HOH
HOH
882
A
HOH
43
3
HOH
HOH
883
A
HOH
160
3
HOH
HOH
884
A
HOH
158
3
HOH
HOH
885
A
HOH
26
3
HOH
HOH
886
A
HOH
180
3
HOH
HOH
887
A
HOH
185
3
HOH
HOH
888
A
HOH
24
3
HOH
HOH
889
A
HOH
70
3
HOH
HOH
890
A
HOH
42
3
HOH
HOH
891
A
HOH
62
3
HOH
HOH
892
A
HOH
223
3
HOH
HOH
893
A
HOH
194
3
HOH
HOH
894
A
HOH
116
3
HOH
HOH
895
A
HOH
52
3
HOH
HOH
896
A
HOH
122
3
HOH
HOH
897
A
HOH
35
3
HOH
HOH
898
A
HOH
33
3
HOH
HOH
899
A
HOH
213
3
HOH
HOH
900
A
HOH
187
3
HOH
HOH
901
A
HOH
222
3
HOH
HOH
902
A
HOH
78
3
HOH
HOH
903
A
HOH
164
3
HOH
HOH
904
A
HOH
155
3
HOH
HOH
905
A
HOH
139
3
HOH
HOH
906
A
HOH
186
3
HOH
HOH
907
A
HOH
17
3
HOH
HOH
908
A
HOH
109
3
HOH
HOH
909
A
HOH
151
3
HOH
HOH
910
A
HOH
118
3
HOH
HOH
911
A
HOH
168
3
HOH
HOH
912
A
HOH
21
3
HOH
HOH
913
A
HOH
149
3
HOH
HOH
914
A
HOH
198
3
HOH
HOH
915
A
HOH
46
3
HOH
HOH
916
A
HOH
79
3
HOH
HOH
917
A
HOH
51
3
HOH
HOH
918
A
HOH
143
3
HOH
HOH
919
A
HOH
101
3
HOH
HOH
920
A
HOH
106
3
HOH
HOH
921
A
HOH
212
3
HOH
HOH
922
A
HOH
53
3
HOH
HOH
923
A
HOH
119
3
HOH
HOH
924
A
HOH
132
3
HOH
HOH
925
A
HOH
165
3
HOH
HOH
926
A
HOH
90
3
HOH
HOH
927
A
HOH
133
3
HOH
HOH
928
A
HOH
193
3
HOH
HOH
929
A
HOH
178
3
HOH
HOH
930
A
HOH
159
3
HOH
HOH
931
A
HOH
156
3
HOH
HOH
932
A
HOH
4
3
HOH
HOH
933
A
HOH
54
3
HOH
HOH
934
A
HOH
188
3
HOH
HOH
935
A
HOH
218
3
HOH
HOH
936
A
HOH
201
3
HOH
HOH
937
A
HOH
219
3
HOH
HOH
938
A
HOH
47
3
HOH
HOH
939
A
HOH
98
3
HOH
HOH
940
A
HOH
69
3
HOH
HOH
941
A
HOH
36
3
HOH
HOH
942
A
HOH
157
3
HOH
HOH
943
A
HOH
41
3
HOH
HOH
944
A
HOH
166
3
HOH
HOH
945
A
HOH
147
3
HOH
HOH
946
A
HOH
148
3
HOH
HOH
947
A
HOH
32
3
HOH
HOH
948
A
HOH
130
3
HOH
HOH
949
A
HOH
216
3
HOH
HOH
950
A
HOH
66
3
HOH
HOH
951
A
HOH
175
3
HOH
HOH
952
A
HOH
181
3
HOH
HOH
953
A
HOH
81
3
HOH
HOH
954
A
HOH
110
3
HOH
HOH
955
A
HOH
99
3
HOH
HOH
956
A
HOH
173
3
HOH
HOH
957
A
HOH
174
3
HOH
HOH
958
A
HOH
195
3
HOH
HOH
959
A
HOH
162
3
HOH
HOH
960
A
HOH
57
3
HOH
HOH
961
A
HOH
38
3
HOH
HOH
962
A
HOH
207
3
HOH
HOH
963
A
HOH
210
3
HOH
HOH
964
A
HOH
140
3
HOH
HOH
965
A
HOH
191
3
HOH
HOH
966
A
HOH
211
3
HOH
HOH
967
A
HOH
71
3
HOH
HOH
968
A
HOH
65
3
HOH
HOH
969
A
HOH
208
3
HOH
HOH
970
A
HOH
205
3
HOH
HOH
971
A
HOH
204
3
HOH
HOH
972
A
HOH
28
3
HOH
HOH
973
A
HOH
86
3
HOH
HOH
974
A
HOH
170
3
HOH
HOH
975
A
HOH
135
3
HOH
HOH
101
B
HOH
8
3
HOH
HOH
102
B
HOH
40
3
HOH
HOH
103
B
HOH
16
3
HOH
HOH
104
B
HOH
103
3
HOH
HOH
105
B
HOH
100
3
HOH
HOH
106
B
HOH
102
3
HOH
HOH
107
B
HOH
105
3
HOH
HOH
108
B
HOH
104
3
HOH
HOH
109
B
HOH
20
3
HOH
HOH
110
B
HOH
29
3
HOH
HOH
111
B
HOH
141
3
HOH
HOH
112
B
HOH
129
3
HOH
HOH
113
B
HOH
142
3
HOH
HOH
114
B
n
1
367
A
n
2
368
A
n
3
369
A
n
4
370
A
n
5
371
A
n
6
372
A
HIS
373
n
7
HIS
373
A
LEU
374
n
8
LEU
374
A
SER
375
n
9
SER
375
A
ASP
376
n
10
ASP
376
A
MET
377
n
11
MET
377
A
LEU
378
n
12
LEU
378
A
GLN
379
n
13
GLN
379
A
GLN
380
n
14
GLN
380
A
LEU
381
n
15
LEU
381
A
HIS
382
n
16
HIS
382
A
SER
383
n
17
SER
383
A
VAL
384
n
18
VAL
384
A
ASN
385
n
19
ASN
385
A
ALA
386
n
20
ALA
386
A
SER
387
n
21
SER
387
A
LYS
388
n
22
LYS
388
A
PRO
389
n
23
PRO
389
A
SER
390
n
24
SER
390
A
GLU
391
n
25
GLU
391
A
ARG
392
n
26
ARG
392
A
GLY
393
n
27
GLY
393
A
LEU
394
n
28
LEU
394
A
VAL
395
n
29
VAL
395
A
ARG
396
n
30
ARG
396
A
GLN
397
n
31
GLN
397
A
GLU
398
n
32
GLU
398
A
GLU
399
n
33
GLU
399
A
ALA
400
n
34
ALA
400
A
GLU
401
n
35
GLU
401
A
ASP
402
n
36
ASP
402
A
PRO
403
n
37
PRO
403
A
ALA
404
n
38
ALA
404
A
CYS
405
n
39
CYS
405
A
ILE
406
n
40
ILE
406
A
PRO
407
n
41
PRO
407
A
ILE
408
n
42
ILE
408
A
PHE
409
n
43
PHE
409
A
TRP
410
n
44
TRP
410
A
VAL
411
n
45
VAL
411
A
SER
412
n
46
SER
412
A
LYS
413
n
47
LYS
413
A
TRP
414
n
48
TRP
414
A
VAL
415
n
49
VAL
415
A
ASP
416
n
50
ASP
416
A
TYR
417
n
51
TYR
417
A
SER
418
n
52
SER
418
A
ASP
419
n
53
ASP
419
A
LYS
420
n
54
LYS
420
A
TYR
421
n
55
TYR
421
A
GLY
422
n
56
GLY
422
A
LEU
423
n
57
LEU
423
A
GLY
424
n
58
GLY
424
A
TYR
425
n
59
TYR
425
A
GLN
426
n
60
GLN
426
A
LEU
427
n
61
LEU
427
A
CYS
428
n
62
CYS
428
A
ASP
429
n
63
ASP
429
A
ASN
430
n
64
ASN
430
A
SER
431
n
65
SER
431
A
VAL
432
n
66
VAL
432
A
GLY
433
n
67
GLY
433
A
VAL
434
n
68
VAL
434
A
LEU
435
n
69
LEU
435
A
PHE
436
n
70
PHE
436
A
ASN
437
n
71
ASN
437
A
ASP
438
n
72
ASP
438
A
SER
439
n
73
SER
439
A
THR
440
n
74
THR
440
A
ARG
441
n
75
ARG
441
A
LEU
442
n
76
LEU
442
A
ILE
443
n
77
ILE
443
A
LEU
444
n
78
LEU
444
A
TYR
445
n
79
TYR
445
A
ASN
446
n
80
ASN
446
A
ASP
447
n
81
ASP
447
A
GLY
448
n
82
GLY
448
A
ASP
449
n
83
ASP
449
A
SER
450
n
84
SER
450
A
LEU
451
n
85
LEU
451
A
GLN
452
n
86
GLN
452
A
TYR
453
n
87
TYR
453
A
ILE
454
n
88
ILE
454
A
GLU
455
n
89
GLU
455
A
ARG
456
n
90
ARG
456
A
ASP
457
n
91
ASP
457
A
GLY
458
n
92
GLY
458
A
THR
459
n
93
THR
459
A
GLU
460
n
94
GLU
460
A
SER
461
n
95
SER
461
A
TYR
462
n
96
TYR
462
A
LEU
463
n
97
LEU
463
A
THR
464
n
98
THR
464
A
VAL
465
n
99
VAL
465
A
SER
466
n
100
SER
466
A
SER
467
n
101
SER
467
A
HIS
468
n
102
HIS
468
A
PRO
469
n
103
PRO
469
A
ASN
470
n
104
ASN
470
A
SER
471
n
105
SER
471
A
LEU
472
n
106
LEU
472
A
MET
473
n
107
MET
473
A
LYS
474
n
108
LYS
474
A
LYS
475
n
109
LYS
475
A
ILE
476
n
110
ILE
476
A
THR
477
n
111
THR
477
A
LEU
478
n
112
LEU
478
A
LEU
479
n
113
LEU
479
A
LYS
480
n
114
LYS
480
A
TYR
481
n
115
TYR
481
A
PHE
482
n
116
PHE
482
A
ARG
483
n
117
ARG
483
A
ASN
484
n
118
ASN
484
A
TYR
485
n
119
TYR
485
A
MET
486
n
120
MET
486
A
SER
487
n
121
SER
487
A
GLU
488
n
122
GLU
488
A
HIS
489
n
123
HIS
489
A
LEU
490
n
124
LEU
490
A
LEU
491
n
125
LEU
491
A
LYS
492
n
126
LYS
492
A
ALA
493
n
127
ALA
493
A
GLY
494
n
128
GLY
494
A
ALA
495
n
129
ALA
495
A
ASN
496
n
130
ASN
496
A
ILE
497
n
131
ILE
497
A
THR
498
n
132
THR
498
A
PRO
499
n
133
PRO
499
A
ARG
500
n
134
ARG
500
A
GLU
501
n
135
GLU
501
A
GLY
502
n
136
GLY
502
A
ASP
503
n
137
ASP
503
A
GLU
504
n
138
GLU
504
A
LEU
505
n
139
LEU
505
A
ALA
506
n
140
ALA
506
A
ARG
507
n
141
ARG
507
A
LEU
508
n
142
LEU
508
A
PRO
509
n
143
PRO
509
A
TYR
510
n
144
TYR
510
A
LEU
511
n
145
LEU
511
A
ARG
512
n
146
ARG
512
A
THR
513
n
147
THR
513
A
TRP
514
n
148
TRP
514
A
PHE
515
n
149
PHE
515
A
ARG
516
n
150
ARG
516
A
THR
517
n
151
THR
517
A
ARG
518
n
152
ARG
518
A
SER
519
n
153
SER
519
A
ALA
520
n
154
ALA
520
A
ILE
521
n
155
ILE
521
A
ILE
522
n
156
ILE
522
A
LEU
523
n
157
LEU
523
A
HIS
524
n
158
HIS
524
A
LEU
525
n
159
LEU
525
A
SER
526
n
160
SER
526
A
ASN
527
n
161
ASN
527
A
GLY
528
n
162
GLY
528
A
SER
529
n
163
SER
529
A
VAL
530
n
164
VAL
530
A
GLN
531
n
165
GLN
531
A
ILE
532
n
166
ILE
532
A
ASN
533
n
167
ASN
533
A
PHE
534
n
168
PHE
534
A
PHE
535
n
169
PHE
535
A
GLN
536
n
170
GLN
536
A
ASP
537
n
171
ASP
537
A
HIS
538
n
172
HIS
538
A
THR
539
n
173
THR
539
A
LYS
540
n
174
LYS
540
A
LEU
541
n
175
LEU
541
A
ILE
542
n
176
ILE
542
A
LEU
543
n
177
LEU
543
A
CYS
544
n
178
CYS
544
A
PRO
545
n
179
PRO
545
A
LEU
546
n
180
LEU
546
A
MET
547
n
181
MET
547
A
ALA
548
n
182
ALA
548
A
ALA
549
n
183
ALA
549
A
VAL
550
n
184
VAL
550
A
THR
551
n
185
THR
551
A
TYR
552
n
186
TYR
552
A
ILE
553
n
187
ILE
553
A
ASP
554
n
188
ASP
554
A
GLU
555
n
189
GLU
555
A
LYS
556
n
190
LYS
556
A
ARG
557
n
191
ARG
557
A
ASP
558
n
192
ASP
558
A
PHE
559
n
193
PHE
559
A
ARG
560
n
194
ARG
560
A
THR
561
n
195
THR
561
A
TYR
562
n
196
TYR
562
A
ARG
563
n
197
ARG
563
A
LEU
564
n
198
LEU
564
A
SER
565
n
199
SER
565
A
LEU
566
n
200
LEU
566
A
LEU
567
n
201
LEU
567
A
GLU
568
n
202
GLU
568
A
GLU
569
n
203
GLU
569
A
TYR
570
n
204
TYR
570
A
GLY
571
n
205
GLY
571
A
CYS
572
n
206
CYS
572
A
CYS
573
n
207
CYS
573
A
LYS
574
n
208
LYS
574
A
GLU
575
n
209
GLU
575
A
LEU
576
n
210
LEU
576
A
ALA
577
n
211
ALA
577
A
SER
578
n
212
SER
578
A
ARG
579
n
213
ARG
579
A
LEU
580
n
214
LEU
580
A
ARG
581
n
215
ARG
581
A
TYR
582
n
216
TYR
582
A
ALA
583
n
217
ALA
583
A
ARG
584
n
218
ARG
584
A
THR
585
n
219
THR
585
A
MET
586
n
220
MET
586
A
VAL
587
n
221
VAL
587
A
ASP
588
n
222
ASP
588
A
LYS
589
n
223
LYS
589
A
LEU
590
n
224
LEU
590
A
LEU
591
n
225
LEU
591
A
SER
592
n
226
SER
592
A
n
227
593
A
n
228
594
A
n
229
595
A
n
230
596
A
n
231
597
A
n
232
598
A
n
233
599
A
n
234
600
A
n
235
601
A
n
236
602
A
n
237
603
A
QQQ
1
n
1
4L0
1
B
QQQ
1
n
2
LEU
2
B
QQQ
1
n
3
56A
3
B
QQQ
1
n
4
SER
4
B
QQQ
1
n
5
TPO
5
B
QQQ
1
n
6
NH2
6
B
author_and_software_defined_assembly
PISA
2
dimeric
1410
-8
11110
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
415
A
N
VAL
49
A
O
GLY
424
A
O
GLY
58
A
N
TYR
425
A
N
TYR
59
A
O
GLY
433
A
O
GLY
67
A
N
VAL
432
A
N
VAL
66
A
O
LEU
444
A
O
LEU
78
A
N
ILE
443
A
N
ILE
77
A
O
GLN
452
A
O
GLN
86
A
N
LEU
451
A
N
LEU
85
A
O
LEU
463
A
O
LEU
97
A
N
PHE
515
A
N
PHE
149
A
O
ILE
522
A
O
ILE
156
A
N
LEU
523
A
N
LEU
157
A
O
GLN
531
A
O
GLN
165
A
N
VAL
530
A
N
VAL
164
A
O
LEU
543
A
O
LEU
177
A
N
LYS
540
A
N
LYS
174
A
O
ILE
553
A
O
ILE
187
A
N
VAL
550
A
N
VAL
184
A
O
TYR
562
A
O
TYR
196
1
A
CG
ARG
456
A
CG
ARG
90
1
Y
1
A
CD
ARG
456
A
CD
ARG
90
1
Y
1
A
NE
ARG
456
A
NE
ARG
90
1
Y
1
A
CZ
ARG
456
A
CZ
ARG
90
1
Y
1
A
NH1
ARG
456
A
NH1
ARG
90
1
Y
1
A
NH2
ARG
456
A
NH2
ARG
90
1
Y
1
A
CG
TYR
462
A
CG
TYR
96
1
Y
1
A
CD1
TYR
462
A
CD1
TYR
96
1
Y
1
A
CD2
TYR
462
A
CD2
TYR
96
1
Y
1
A
CE1
TYR
462
A
CE1
TYR
96
1
Y
1
A
CE2
TYR
462
A
CE2
TYR
96
1
Y
1
A
CZ
TYR
462
A
CZ
TYR
96
1
Y
1
A
OH
TYR
462
A
OH
TYR
96
1
Y
1
A
CG
ARG
500
A
CG
ARG
134
1
Y
1
A
CD
ARG
500
A
CD
ARG
134
1
Y
1
A
NE
ARG
500
A
NE
ARG
134
1
Y
1
A
CZ
ARG
500
A
CZ
ARG
134
1
Y
1
A
NH1
ARG
500
A
NH1
ARG
134
1
Y
1
A
NH2
ARG
500
A
NH2
ARG
134
1
Y
1
A
CG
GLU
501
A
CG
GLU
135
1
Y
1
A
CD
GLU
501
A
CD
GLU
135
1
Y
1
A
OE1
GLU
501
A
OE1
GLU
135
1
Y
1
A
OE2
GLU
501
A
OE2
GLU
135
1
Y
1
A
CG
ARG
507
A
CG
ARG
141
1
Y
1
A
CD
ARG
507
A
CD
ARG
141
1
Y
1
A
NE
ARG
507
A
NE
ARG
141
1
Y
1
A
CZ
ARG
507
A
CZ
ARG
141
1
Y
1
A
NH1
ARG
507
A
NH1
ARG
141
1
Y
1
A
NH2
ARG
507
A
NH2
ARG
141
1
Y
1
A
CG
LYS
556
A
CG
LYS
190
1
Y
1
A
CD
LYS
556
A
CD
LYS
190
1
Y
1
A
CE
LYS
556
A
CE
LYS
190
1
Y
1
A
NZ
LYS
556
A
NZ
LYS
190
1
Y
1
A
GLY
367
A
GLY
1
1
Y
1
A
ALA
368
A
ALA
2
1
Y
1
A
HIS
369
A
HIS
3
1
Y
1
A
MET
370
A
MET
4
1
Y
1
A
ASP
371
A
ASP
5
1
Y
1
A
CYS
372
A
CYS
6
1
Y
1
A
SER
593
A
SER
227
1
Y
1
A
ARG
594
A
ARG
228
1
Y
1
A
SER
595
A
SER
229
1
Y
1
A
ALA
596
A
ALA
230
1
Y
1
A
SER
597
A
SER
231
1
Y
1
A
ASN
598
A
ASN
232
1
Y
1
A
ARG
599
A
ARG
233
1
Y
1
A
LEU
600
A
LEU
234
1
Y
1
A
LYS
601
A
LYS
235
1
Y
1
A
ALA
602
A
ALA
236
1
Y
1
A
SER
603
A
SER
237
1
Y
1
A
A
O
O
HOH
HOH
887
953
1.86
1
A
A
O
O
HOH
HOH
823
953
1.90
1
A
A
OD2
O
ASP
HOH
419
801
2.14
1
-4.34
0.50
120.30
115.96
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
516
516
516
N
1
A
A
O
O
HOH
HOH
904
905
2.10
1_555
2_547
1
A
TYR
421
-127.87
-52.90
1
A
ASP
449
-135.93
-39.27
1
A
LEU
463
-164.59
-165.03
1
A
LEU
490
80.66
155.66
0.1789
0.1493
0.1507
1.398
37.901
2000
42002
4.76
98.32
0.13
random
1
FREE R-VALUE
1.35
MOLECULAR REPLACEMENT
17.24
0.90
1.11
3RQ7
ML
FLAT BULK SOLVENT MODEL
1.398
37.901
189
2014
67
0
1758
0.012
1982
1.472
2708
12.598
797
0.089
302
0.007
359
0.2167
0.1558
1.4329
138
2757
96.00
0.2311
0.1481
1.4716
141
2813
97.00
0.1891
0.1367
1.5149
142
2855
98.00
0.2038
0.1235
1.5638
141
2811
98.00
0.1820
0.1225
1.6197
143
2863
98.00
0.1826
0.1254
1.6846
142
2851
99.00
0.1804
0.1216
1.7612
144
2879
99.00
0.1880
0.1287
1.8541
142
2823
98.00
0.1950
0.1329
1.9703
144
2901
99.00
0.1862
0.1340
2.1224
145
2878
99.00
0.1540
0.1342
2.3359
144
2903
100.00
0.1788
0.1500
2.6739
142
2823
97.00
0.1688
0.1686
3.3685
146
2916
100.00
0.1778
0.1648
37.9151
146
2929
98.00
1.398
50
4X9R
42019
0.064
1
3.1
6.5
98.4
.480
1.398
1.42
1.5
1
6.1
96.3
refinement
PHENIX
dev_1951
data extraction
PDB_EXTRACT
3.15
data reduction
HKL-2000
data scaling
HKL-2000
model building
Coot
PLK-1 polo-box domain in complex with Bioactive Imidazolium-containing phosphopeptide macrocycle 3B
1
N
N
2
N
N
3
N
N
3
N
N
A
HIS
373
A
HIS
7
HELX_P
A
SER
387
A
SER
21
1
AA1
15
A
LYS
388
A
LYS
22
HELX_P
A
ARG
392
A
ARG
26
5
AA2
5
A
ARG
396
A
ARG
30
HELX_P
A
GLU
401
A
GLU
35
5
AA3
6
A
ASP
402
A
ASP
36
HELX_P
A
ILE
406
A
ILE
40
5
AA4
5
A
PRO
469
A
PRO
103
HELX_P
A
SER
471
A
SER
105
5
AA5
3
A
LEU
472
A
LEU
106
HELX_P
A
HIS
489
A
HIS
123
1
AA6
18
A
LEU
564
A
LEU
198
HELX_P
A
GLY
571
A
GLY
205
1
AA7
8
A
CYS
573
A
CYS
207
HELX_P
A
SER
592
A
SER
226
1
AA8
20
covale
1.336
both
B
4L0
1
B
C
4L0
1
1_555
B
LEU
2
B
N
LEU
2
1_555
covale
1.472
one
B
4L0
1
B
C12
4L0
1
1_555
B
56A
3
B
NE2
56A
3
1_555
covale
1.327
both
B
LEU
2
B
C
LEU
2
1_555
B
56A
3
B
N
56A
3
1_555
covale
1.332
both
B
56A
3
B
C
56A
3
1_555
B
SER
4
B
N
SER
4
1_555
covale
1.336
both
B
SER
4
B
C
SER
4
1_555
B
TPO
5
B
N
TPO
5
1_555
covale
1.332
both
B
TPO
5
B
C
TPO
5
1_555
B
NH2
6
B
N
NH2
6
1_555
TRANSFERASE/TRANSFERASE INHIBITOR
POLO BOX DOMAIN PHOSPHOPEPTIDE MACROCYCLE INHIBITOR COMPLEX, TRANSFERASE-TRANSFERASE INHIBITOR complex
PLK1_HUMAN
UNP
1
371
P53350
DCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDS
LQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSV
QINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRSASNRLKAS
4X9R
PDB
2
1
4X9R
371
603
4X9R
371
603
P53350
A
1
5
237
1
6
4X9R
1
6
4X9R
B
2
1
6
1
expression tag
GLY
367
4X9R
A
P53350
UNP
1
1
expression tag
ALA
368
4X9R
A
P53350
UNP
2
1
expression tag
HIS
369
4X9R
A
P53350
UNP
3
1
expression tag
MET
370
4X9R
A
P53350
UNP
4
6
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
411
A
VAL
45
A
TYR
417
A
TYR
51
A
GLY
422
A
GLY
56
A
LEU
427
A
LEU
61
A
VAL
432
A
VAL
66
A
PHE
436
A
PHE
70
A
ARG
441
A
ARG
75
A
LEU
444
A
LEU
78
A
SER
450
A
SER
84
A
ILE
454
A
ILE
88
A
GLU
460
A
GLU
94
A
THR
464
A
THR
98
A
LEU
511
A
LEU
145
A
ARG
516
A
ARG
150
A
ALA
520
A
ALA
154
A
LEU
525
A
LEU
159
A
VAL
530
A
VAL
164
A
PHE
534
A
PHE
168
A
LYS
540
A
LYS
174
A
CYS
544
A
CYS
178
A
ALA
549
A
ALA
183
A
ILE
553
A
ILE
187
A
PHE
559
A
PHE
193
A
ARG
563
A
ARG
197
4
P 1 21 1