0.023516 0.000000 0.000000 0.000000 0.015297 0.000000 0.000000 0.000000 0.011825 0.00000 0.00000 0.00000 McCulloch, K.M. McCranie, E.K. Sarwar, M. Mathieu, J.L. Gitschlag, B.L. Du, Y. Bachmann, B.O. Iverson, T.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 42.524 65.372 84.567 C5 H6 O5 146.098 2-OXOGLUTARIC ACID non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C3 H5 N2 1 69.085 IMIDAZOLE non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Ni 2 58.693 NICKEL (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O N 3 N O N 4 N C N 5 N O N 6 N C N 7 N C N 8 N C N 9 N O N 10 N O N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N N N 18 S C N 19 N C N 20 N O N 21 N C N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N N N 31 S C N 32 N C N 33 N O N 34 N C N 35 N C N 36 N C N 37 N N N 38 N C N 39 N N N 40 N N N 41 N O N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N N N 58 S C N 59 N C N 60 N O N 61 N C N 62 N C N 63 N O N 64 N N N 65 N O N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N O N 81 N O N 82 N O N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N N N 91 R C N 92 N C N 93 N O N 94 N C N 95 N S N 96 N O N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N N N 105 S C N 106 N C N 107 N O N 108 N C N 109 N C N 110 N C N 111 N O N 112 N N N 113 N O N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N N N 125 S C N 126 N C N 127 N O N 128 N C N 129 N C N 130 N C N 131 N O N 132 N O N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N N N 144 N C N 145 N C N 146 N O N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N N N 154 S C N 155 N C N 156 N O N 157 N C Y 158 N C Y 159 N N Y 160 N C Y 161 N C Y 162 N N N 163 N O N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N O N 175 N H N 176 N H N 177 N N N 178 S C N 179 N C N 180 N O N 181 S C N 182 N C N 183 N C N 184 N C N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H Y 199 N N Y 200 N C Y 201 N N Y 202 N C Y 203 N C N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N N N 210 S C N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N C N 217 N O N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N C N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 N C N 261 N C N 262 N S N 263 N C N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N NI N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C Y 282 N C Y 283 N C Y 284 N C Y 285 N C Y 286 N C Y 287 N C N 288 N O N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C N 305 N C N 306 N C N 307 N O N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 N C N 322 N O N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 R C N 336 N O N 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N N Y 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N N N 376 S C N 377 N C N 378 N O N 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C N 386 N O N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C N 404 N C N 405 N C N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N doub N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N doub N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N doub N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing Y 155 N sing Y 156 N doub Y 157 N doub N 158 N sing Y 159 N sing N 160 N sing Y 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing Y 188 N sing Y 189 N sing N 190 N sing Y 191 N doub N 192 N sing Y 193 N sing N 194 N sing Y 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing Y 273 N doub Y 274 N sing Y 275 N sing N 276 N sing Y 277 N doub N 278 N sing Y 279 N doub N 280 N sing Y 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N doub Y 347 N sing Y 348 N sing N 349 N sing Y 350 N sing Y 351 N doub N 352 N sing Y 353 N doub N 354 N sing Y 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N doub N 366 N sing N 367 N sing N 368 N sing N 369 N sing Y 370 N doub Y 371 N sing Y 372 N sing N 373 N sing Y 374 N doub N 375 N sing Y 376 N doub N 377 N sing Y 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N doub N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 1091-6490 112 11547 11552 10.1073/pnas.1500964112 26240321 Oxidative cyclizations in orthosomycin biosynthesis expand the known chemistry of an oxygenase superfamily. 2015 10.2210/pdb4xac/pdb pdb_00004xac 100 1 CCD 2011-11-07 MARMOSAIC 300 mm CCD SINGLE WAVELENGTH M x-ray 1 1.127 1.0 21-ID-D APS 1.127 SYNCHROTRON APS BEAMLINE 21-ID-D 28611.170 EvdO2 1 man polymer 58.693 NICKEL (II) ION 1 syn non-polymer 69.085 IMIDAZOLE 1 syn non-polymer 146.098 2-OXOGLUTARIC ACID 1 syn non-polymer 18.015 water 128 nat water no no MDAMEVVGTIDHRDREEFRSRGFAILPQVASESEVAWLRQAYDRLFVRRATPGAEDFYDIAGQRDREGPPLLPQIIKPEK YVPELLDSPHFARCRSIASAFLDMAEEELEFYGHAILKPPRYGAPTPWHQDEAYMDPRWRRRGLSIWTTLDEATVESGCL HYLPGGHRGPVLPHHHIDNDDRIRGLMTDDVDPTSAVACPLAPGGAVVHDFRTPHYAGPNLTDQPRRAYVLVFMSAPAEV ADPEPRPWMDWG MDAMEVVGTIDHRDREEFRSRGFAILPQVASESEVAWLRQAYDRLFVRRATPGAEDFYDIAGQRDREGPPLLPQIIKPEK YVPELLDSPHFARCRSIASAFLDMAEEELEFYGHAILKPPRYGAPTPWHQDEAYMDPRWRRRGLSIWTTLDEATVESGCL HYLPGGHRGPVLPHHHIDNDDRIRGLMTDDVDPTSAVACPLAPGGAVVHDFRTPHYAGPNLTDQPRRAYVLVFMSAPAEV ADPEPRPWMDWG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 252 47853 Micromonospora carbonacea var. aurantiaca 469008 Escherichia coli BL21(DE3) plasmid Biological sequence pET28a(+) 1 2.05 40.12 VAPOR DIFFUSION, HANGING DROP 8.0 38% PEG 8000, 100 mM imidazole, 250 mM NaCl. Crystals soaked 30 min in 20 mM 2-oxoglutarate solution 293 citation diffrn_detector pdbx_struct_oper_list software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn repository Initial release Database references Database references Data collection Database references Derived calculations Refinement description Data collection Database references Derived calculations Refinement description 1 0 2015-08-05 1 1 2015-08-19 1 2 2015-09-30 1 3 2017-08-23 1 4 2023-09-27 _citation.journal_id_CSD _diffrn_detector.type _pdbx_struct_oper_list.symmetry_operation _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id N RCSB Y RCSB 2014-12-13 REL REL NI NICKEL (II) ION IMD IMIDAZOLE AKG 2-OXOGLUTARIC ACID HOH water 4XAB PDB experimental model NI 301 2 NI NI 301 A IMD 302 3 IMD IMD 302 A AKG 303 4 AKG AKG 303 A HOH 402 5 HOH HOH 401 A HOH 403 5 HOH HOH 402 A HOH 404 5 HOH HOH 403 A HOH 405 5 HOH HOH 404 A HOH 406 5 HOH HOH 405 A HOH 408 5 HOH HOH 406 A HOH 409 5 HOH HOH 407 A HOH 410 5 HOH HOH 408 A HOH 411 5 HOH HOH 409 A HOH 412 5 HOH HOH 410 A HOH 413 5 HOH HOH 411 A HOH 414 5 HOH HOH 412 A HOH 415 5 HOH HOH 413 A HOH 416 5 HOH HOH 414 A HOH 417 5 HOH HOH 415 A HOH 418 5 HOH HOH 416 A HOH 419 5 HOH HOH 417 A HOH 420 5 HOH HOH 418 A HOH 421 5 HOH HOH 419 A HOH 422 5 HOH HOH 420 A HOH 423 5 HOH HOH 421 A HOH 424 5 HOH HOH 422 A HOH 401 5 HOH HOH 423 A HOH 425 5 HOH HOH 424 A HOH 426 5 HOH HOH 425 A HOH 427 5 HOH HOH 426 A HOH 428 5 HOH HOH 427 A HOH 429 5 HOH HOH 428 A HOH 431 5 HOH HOH 429 A HOH 432 5 HOH HOH 430 A HOH 433 5 HOH HOH 431 A HOH 434 5 HOH HOH 432 A HOH 435 5 HOH HOH 433 A HOH 436 5 HOH HOH 434 A HOH 437 5 HOH HOH 435 A HOH 438 5 HOH HOH 436 A HOH 439 5 HOH HOH 437 A HOH 440 5 HOH HOH 438 A HOH 441 5 HOH HOH 439 A HOH 442 5 HOH HOH 440 A HOH 443 5 HOH HOH 441 A HOH 444 5 HOH HOH 442 A HOH 447 5 HOH HOH 443 A HOH 448 5 HOH HOH 444 A HOH 449 5 HOH HOH 445 A HOH 450 5 HOH HOH 446 A HOH 451 5 HOH HOH 447 A HOH 452 5 HOH HOH 448 A HOH 453 5 HOH HOH 449 A HOH 454 5 HOH HOH 450 A HOH 445 5 HOH HOH 451 A HOH 455 5 HOH HOH 452 A HOH 456 5 HOH HOH 453 A HOH 457 5 HOH HOH 454 A HOH 407 5 HOH HOH 455 A HOH 430 5 HOH HOH 456 A HOH 446 5 HOH HOH 457 A HOH 458 5 HOH HOH 458 A HOH 459 5 HOH HOH 459 A HOH 460 5 HOH HOH 460 A HOH 461 5 HOH HOH 461 A HOH 462 5 HOH HOH 462 A HOH 463 5 HOH HOH 463 A HOH 464 5 HOH HOH 464 A HOH 465 5 HOH HOH 465 A HOH 466 5 HOH HOH 466 A HOH 467 5 HOH HOH 467 A HOH 468 5 HOH HOH 468 A HOH 469 5 HOH HOH 469 A HOH 470 5 HOH HOH 470 A HOH 471 5 HOH HOH 471 A HOH 472 5 HOH HOH 472 A HOH 473 5 HOH HOH 473 A HOH 474 5 HOH HOH 474 A HOH 475 5 HOH HOH 475 A HOH 476 5 HOH HOH 476 A HOH 477 5 HOH HOH 477 A HOH 478 5 HOH HOH 478 A HOH 479 5 HOH HOH 479 A HOH 480 5 HOH HOH 480 A HOH 481 5 HOH HOH 481 A HOH 482 5 HOH HOH 482 A HOH 483 5 HOH HOH 483 A HOH 484 5 HOH HOH 484 A HOH 485 5 HOH HOH 485 A HOH 486 5 HOH HOH 486 A HOH 487 5 HOH HOH 487 A HOH 488 5 HOH HOH 488 A HOH 489 5 HOH HOH 489 A HOH 490 5 HOH HOH 490 A HOH 491 5 HOH HOH 491 A HOH 492 5 HOH HOH 492 A HOH 493 5 HOH HOH 493 A HOH 494 5 HOH HOH 494 A HOH 495 5 HOH HOH 495 A HOH 496 5 HOH HOH 496 A HOH 497 5 HOH HOH 497 A HOH 498 5 HOH HOH 498 A HOH 499 5 HOH HOH 499 A HOH 500 5 HOH HOH 500 A HOH 501 5 HOH HOH 501 A HOH 502 5 HOH HOH 502 A HOH 503 5 HOH HOH 503 A HOH 504 5 HOH HOH 504 A HOH 505 5 HOH HOH 505 A HOH 506 5 HOH HOH 506 A HOH 507 5 HOH HOH 507 A HOH 508 5 HOH HOH 508 A HOH 509 5 HOH HOH 509 A HOH 510 5 HOH HOH 510 A HOH 511 5 HOH HOH 511 A HOH 512 5 HOH HOH 512 A HOH 513 5 HOH HOH 513 A HOH 514 5 HOH HOH 514 A HOH 515 5 HOH HOH 515 A HOH 516 5 HOH HOH 516 A HOH 517 5 HOH HOH 517 A HOH 518 5 HOH HOH 518 A HOH 519 5 HOH HOH 519 A HOH 520 5 HOH HOH 520 A HOH 521 5 HOH HOH 521 A HOH 522 5 HOH HOH 522 A HOH 523 5 HOH HOH 523 A HOH 524 5 HOH HOH 524 A HOH 525 5 HOH HOH 525 A HOH 526 5 HOH HOH 526 A HOH 527 5 HOH HOH 527 A HOH 528 5 HOH HOH 528 A n 1 1 A n 2 2 A n 3 3 A MET 4 n 4 MET 4 A GLU 5 n 5 GLU 5 A VAL 6 n 6 VAL 6 A VAL 7 n 7 VAL 7 A GLY 8 n 8 GLY 8 A THR 9 n 9 THR 9 A ILE 10 n 10 ILE 10 A ASP 11 n 11 ASP 11 A HIS 12 n 12 HIS 12 A ARG 13 n 13 ARG 13 A ASP 14 n 14 ASP 14 A ARG 15 n 15 ARG 15 A GLU 16 n 16 GLU 16 A GLU 17 n 17 GLU 17 A PHE 18 n 18 PHE 18 A ARG 19 n 19 ARG 19 A SER 20 n 20 SER 20 A ARG 21 n 21 ARG 21 A GLY 22 n 22 GLY 22 A PHE 23 n 23 PHE 23 A ALA 24 n 24 ALA 24 A ILE 25 n 25 ILE 25 A LEU 26 n 26 LEU 26 A PRO 27 n 27 PRO 27 A GLN 28 n 28 GLN 28 A VAL 29 n 29 VAL 29 A ALA 30 n 30 ALA 30 A SER 31 n 31 SER 31 A GLU 32 n 32 GLU 32 A SER 33 n 33 SER 33 A GLU 34 n 34 GLU 34 A VAL 35 n 35 VAL 35 A ALA 36 n 36 ALA 36 A TRP 37 n 37 TRP 37 A LEU 38 n 38 LEU 38 A ARG 39 n 39 ARG 39 A GLN 40 n 40 GLN 40 A ALA 41 n 41 ALA 41 A TYR 42 n 42 TYR 42 A ASP 43 n 43 ASP 43 A ARG 44 n 44 ARG 44 A LEU 45 n 45 LEU 45 A PHE 46 n 46 PHE 46 A VAL 47 n 47 VAL 47 A ARG 48 n 48 ARG 48 A ARG 49 n 49 ARG 49 A ALA 50 n 50 ALA 50 A THR 51 n 51 THR 51 A PRO 52 n 52 PRO 52 A GLY 53 n 53 GLY 53 A ALA 54 n 54 ALA 54 A GLU 55 n 55 GLU 55 A ASP 56 n 56 ASP 56 A PHE 57 n 57 PHE 57 A TYR 58 n 58 TYR 58 A ASP 59 n 59 ASP 59 A ILE 60 n 60 ILE 60 A ALA 61 n 61 ALA 61 A GLY 62 n 62 GLY 62 A GLN 63 n 63 GLN 63 A ARG 64 n 64 ARG 64 A n 65 65 A n 66 66 A n 67 67 A GLY 68 n 68 GLY 68 A PRO 69 n 69 PRO 69 A PRO 70 n 70 PRO 70 A LEU 71 n 71 LEU 71 A LEU 72 n 72 LEU 72 A PRO 73 n 73 PRO 73 A GLN 74 n 74 GLN 74 A ILE 75 n 75 ILE 75 A ILE 76 n 76 ILE 76 A LYS 77 n 77 LYS 77 A PRO 78 n 78 PRO 78 A GLU 79 n 79 GLU 79 A LYS 80 n 80 LYS 80 A TYR 81 n 81 TYR 81 A VAL 82 n 82 VAL 82 A PRO 83 n 83 PRO 83 A GLU 84 n 84 GLU 84 A LEU 85 n 85 LEU 85 A LEU 86 n 86 LEU 86 A ASP 87 n 87 ASP 87 A SER 88 n 88 SER 88 A PRO 89 n 89 PRO 89 A HIS 90 n 90 HIS 90 A PHE 91 n 91 PHE 91 A ALA 92 n 92 ALA 92 A ARG 93 n 93 ARG 93 A CYS 94 n 94 CYS 94 A ARG 95 n 95 ARG 95 A SER 96 n 96 SER 96 A ILE 97 n 97 ILE 97 A ALA 98 n 98 ALA 98 A SER 99 n 99 SER 99 A ALA 100 n 100 ALA 100 A PHE 101 n 101 PHE 101 A LEU 102 n 102 LEU 102 A ASP 103 n 103 ASP 103 A MET 104 n 104 MET 104 A ALA 105 n 105 ALA 105 A GLU 106 n 106 GLU 106 A GLU 107 n 107 GLU 107 A GLU 108 n 108 GLU 108 A LEU 109 n 109 LEU 109 A GLU 110 n 110 GLU 110 A PHE 111 n 111 PHE 111 A TYR 112 n 112 TYR 112 A GLY 113 n 113 GLY 113 A HIS 114 n 114 HIS 114 A ALA 115 n 115 ALA 115 A ILE 116 n 116 ILE 116 A LEU 117 n 117 LEU 117 A LYS 118 n 118 LYS 118 A PRO 119 n 119 PRO 119 A PRO 120 n 120 PRO 120 A ARG 121 n 121 ARG 121 A TYR 122 n 122 TYR 122 A GLY 123 n 123 GLY 123 A ALA 124 n 124 ALA 124 A PRO 125 n 125 PRO 125 A THR 126 n 126 THR 126 A PRO 127 n 127 PRO 127 A TRP 128 n 128 TRP 128 A HIS 129 n 129 HIS 129 A GLN 130 n 130 GLN 130 A ASP 131 n 131 ASP 131 A GLU 132 n 132 GLU 132 A ALA 133 n 133 ALA 133 A TYR 134 n 134 TYR 134 A MET 135 n 135 MET 135 A ASP 136 n 136 ASP 136 A PRO 137 n 137 PRO 137 A ARG 138 n 138 ARG 138 A TRP 139 n 139 TRP 139 A ARG 140 n 140 ARG 140 A ARG 141 n 141 ARG 141 A ARG 142 n 142 ARG 142 A GLY 143 n 143 GLY 143 A LEU 144 n 144 LEU 144 A SER 145 n 145 SER 145 A ILE 146 n 146 ILE 146 A TRP 147 n 147 TRP 147 A THR 148 n 148 THR 148 A THR 149 n 149 THR 149 A LEU 150 n 150 LEU 150 A ASP 151 n 151 ASP 151 A GLU 152 n 152 GLU 152 A ALA 153 n 153 ALA 153 A THR 154 n 154 THR 154 A VAL 155 n 155 VAL 155 A GLU 156 n 156 GLU 156 A SER 157 n 157 SER 157 A GLY 158 n 158 GLY 158 A CYS 159 n 159 CYS 159 A LEU 160 n 160 LEU 160 A HIS 161 n 161 HIS 161 A TYR 162 n 162 TYR 162 A LEU 163 n 163 LEU 163 A PRO 164 n 164 PRO 164 A GLY 165 n 165 GLY 165 A GLY 166 n 166 GLY 166 A HIS 167 n 167 HIS 167 A ARG 168 n 168 ARG 168 A GLY 169 n 169 GLY 169 A PRO 170 n 170 PRO 170 A VAL 171 n 171 VAL 171 A LEU 172 n 172 LEU 172 A PRO 173 n 173 PRO 173 A HIS 174 n 174 HIS 174 A HIS 175 n 175 HIS 175 A HIS 176 n 176 HIS 176 A ILE 177 n 177 ILE 177 A ASP 178 n 178 ASP 178 A ASN 179 n 179 ASN 179 A ASP 180 n 180 ASP 180 A ASP 181 n 181 ASP 181 A ARG 182 n 182 ARG 182 A ILE 183 n 183 ILE 183 A ARG 184 n 184 ARG 184 A GLY 185 n 185 GLY 185 A LEU 186 n 186 LEU 186 A MET 187 n 187 MET 187 A THR 188 n 188 THR 188 A ASP 189 n 189 ASP 189 A ASP 190 n 190 ASP 190 A VAL 191 n 191 VAL 191 A ASP 192 n 192 ASP 192 A PRO 193 n 193 PRO 193 A THR 194 n 194 THR 194 A SER 195 n 195 SER 195 A ALA 196 n 196 ALA 196 A VAL 197 n 197 VAL 197 A ALA 198 n 198 ALA 198 A CYS 199 n 199 CYS 199 A PRO 200 n 200 PRO 200 A LEU 201 n 201 LEU 201 A ALA 202 n 202 ALA 202 A PRO 203 n 203 PRO 203 A GLY 204 n 204 GLY 204 A GLY 205 n 205 GLY 205 A ALA 206 n 206 ALA 206 A VAL 207 n 207 VAL 207 A VAL 208 n 208 VAL 208 A HIS 209 n 209 HIS 209 A ASP 210 n 210 ASP 210 A PHE 211 n 211 PHE 211 A ARG 212 n 212 ARG 212 A THR 213 n 213 THR 213 A PRO 214 n 214 PRO 214 A HIS 215 n 215 HIS 215 A TYR 216 n 216 TYR 216 A ALA 217 n 217 ALA 217 A GLY 218 n 218 GLY 218 A PRO 219 n 219 PRO 219 A ASN 220 n 220 ASN 220 A LEU 221 n 221 LEU 221 A THR 222 n 222 THR 222 A ASP 223 n 223 ASP 223 A GLN 224 n 224 GLN 224 A PRO 225 n 225 PRO 225 A ARG 226 n 226 ARG 226 A ARG 227 n 227 ARG 227 A ALA 228 n 228 ALA 228 A TYR 229 n 229 TYR 229 A VAL 230 n 230 VAL 230 A LEU 231 n 231 LEU 231 A VAL 232 n 232 VAL 232 A PHE 233 n 233 PHE 233 A MET 234 n 234 MET 234 A SER 235 n 235 SER 235 A ALA 236 n 236 ALA 236 A PRO 237 n 237 PRO 237 A ALA 238 n 238 ALA 238 A GLU 239 n 239 GLU 239 A VAL 240 n 240 VAL 240 A ALA 241 n 241 ALA 241 A ASP 242 n 242 ASP 242 A PRO 243 n 243 PRO 243 A GLU 244 n 244 GLU 244 A PRO 245 n 245 PRO 245 A ARG 246 n 246 ARG 246 A PRO 247 n 247 PRO 247 A TRP 248 n 248 TRP 248 A MET 249 n 249 MET 249 A ASP 250 n 250 ASP 250 A TRP 251 n 251 TRP 251 A n 252 252 A 3.3542 0.1667 0.3758 3.1832 -1.1997 3.3283 0.1129 0.2924 -0.0834 0.0021 0.0709 0.1932 0.1820 -0.1880 -0.1481 0.1632 0.0360 -0.0053 0.1782 -0.0013 0.1862 refined 19.3591 34.1915 46.1854 X-RAY DIFFRACTION 3.2653 1.1205 -1.8041 4.2823 -2.9162 2.6952 0.2153 -0.4160 -0.1229 0.1870 -0.5255 -0.2181 0.1219 0.5988 0.0934 0.3198 0.0318 -0.0150 0.2879 0.0522 0.3475 refined 29.7293 19.8020 62.9590 X-RAY DIFFRACTION 1.2637 0.0411 0.5685 1.2359 0.3890 0.4818 -0.0099 0.1367 -0.1302 -0.0610 -0.0445 -0.0056 -0.0342 0.0981 0.0607 0.2133 0.0523 0.0036 0.2436 0.0235 0.1921 refined 32.9479 33.3761 48.9885 X-RAY DIFFRACTION 2.5025 0.2166 -0.0933 1.2183 0.0121 1.7706 0.0480 -0.2641 -0.0327 0.1893 -0.1057 -0.0671 -0.0004 0.1829 0.0372 0.1953 -0.0001 0.0073 0.1564 0.0472 0.1598 refined 32.6450 38.4966 56.9101 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 (CHAIN A AND RESID 4:44) X-RAY DIFFRACTION 2 (CHAIN A AND RESID 45:87) X-RAY DIFFRACTION 3 (CHAIN A AND RESID 88:142) X-RAY DIFFRACTION 4 (CHAIN A AND RESID 143:251) author_defined_assembly 1 monomeric A HIS 129 A NE2 HIS 129 1_555 A NI 301 B NI NI 1_555 A ASP 131 A OD1 ASP 131 1_555 92.8 A HIS 129 A NE2 HIS 129 1_555 A NI 301 B NI NI 1_555 A HIS 215 A NE2 HIS 215 1_555 85.6 A ASP 131 A OD1 ASP 131 1_555 A NI 301 B NI NI 1_555 A HIS 215 A NE2 HIS 215 1_555 93.6 A HIS 129 A NE2 HIS 129 1_555 A NI 301 B NI NI 1_555 A IMD 302 C N3 IMD 1_555 94.6 A ASP 131 A OD1 ASP 131 1_555 A NI 301 B NI NI 1_555 A IMD 302 C N3 IMD 1_555 86.7 A HIS 215 A NE2 HIS 215 1_555 A NI 301 B NI NI 1_555 A IMD 302 C N3 IMD 1_555 179.6 A HIS 129 A NE2 HIS 129 1_555 A NI 301 B NI NI 1_555 A AKG 303 D O2 AKG 1_555 171.6 A ASP 131 A OD1 ASP 131 1_555 A NI 301 B NI NI 1_555 A AKG 303 D O2 AKG 1_555 95.5 A HIS 215 A NE2 HIS 215 1_555 A NI 301 B NI NI 1_555 A AKG 303 D O2 AKG 1_555 92.7 A IMD 302 C N3 IMD 1_555 A NI 301 B NI NI 1_555 A AKG 303 D O2 AKG 1_555 87.1 A HIS 129 A NE2 HIS 129 1_555 A NI 301 B NI NI 1_555 A AKG 303 D O5 AKG 1_555 90.2 A ASP 131 A OD1 ASP 131 1_555 A NI 301 B NI NI 1_555 A AKG 303 D O5 AKG 1_555 171.8 A HIS 215 A NE2 HIS 215 1_555 A NI 301 B NI NI 1_555 A AKG 303 D O5 AKG 1_555 94.3 A IMD 302 C N3 IMD 1_555 A NI 301 B NI NI 1_555 A AKG 303 D O5 AKG 1_555 85.4 A AKG 303 D O2 AKG 1_555 A NI 301 B NI NI 1_555 A AKG 303 D O5 AKG 1_555 81.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 26 A N LEU 26 A O ALA 206 A O ALA 206 A O VAL 207 A O VAL 207 A N TRP 147 A N TRP 147 A N ILE 146 A N ILE 146 A O LEU 231 A O LEU 231 A O VAL 230 A O VAL 230 A N HIS 114 A N HIS 114 A O ALA 115 A O ALA 115 A N ILE 75 A N ILE 75 A N ARG 49 A N ARG 49 A O PHE 57 A O PHE 57 A N THR 126 A N THR 126 A O ALA 217 A O ALA 217 A O TYR 216 A O TYR 216 A N HIS 161 A N HIS 161 A N LEU 160 A N LEU 160 A O CYS 199 A O CYS 199 A N ARG 140 A N ARG 140 A O ALA 238 A O ALA 238 A N HIS 175 A N HIS 175 A O MET 187 A O MET 187 1 A CG GLU 5 A CG GLU 5 1 Y 1 A CD GLU 5 A CD GLU 5 1 Y 1 A OE1 GLU 5 A OE1 GLU 5 1 Y 1 A OE2 GLU 5 A OE2 GLU 5 1 Y 1 A CB ASP 43 A CB ASP 43 1 Y 1 A CG ASP 43 A CG ASP 43 1 Y 1 A OD1 ASP 43 A OD1 ASP 43 1 Y 1 A OD2 ASP 43 A OD2 ASP 43 1 Y 1 A CG ARG 44 A CG ARG 44 1 Y 1 A CD ARG 44 A CD ARG 44 1 Y 1 A NE ARG 44 A NE ARG 44 1 Y 1 A CZ ARG 44 A CZ ARG 44 1 Y 1 A NH1 ARG 44 A NH1 ARG 44 1 Y 1 A NH2 ARG 44 A NH2 ARG 44 1 Y 1 A CG LYS 80 A CG LYS 80 1 Y 1 A CD LYS 80 A CD LYS 80 1 Y 1 A CE LYS 80 A CE LYS 80 1 Y 1 A NZ LYS 80 A NZ LYS 80 1 Y 1 A CG GLU 84 A CG GLU 84 1 Y 1 A CD GLU 84 A CD GLU 84 1 Y 1 A OE1 GLU 84 A OE1 GLU 84 1 Y 1 A OE2 GLU 84 A OE2 GLU 84 1 Y 1 A CB LEU 86 A CB LEU 86 1 Y 1 A CG LEU 86 A CG LEU 86 1 Y 1 A CD1 LEU 86 A CD1 LEU 86 1 Y 1 A CD2 LEU 86 A CD2 LEU 86 1 Y 1 A CB ASP 87 A CB ASP 87 1 Y 1 A CG ASP 87 A CG ASP 87 1 Y 1 A OD1 ASP 87 A OD1 ASP 87 1 Y 1 A OD2 ASP 87 A OD2 ASP 87 1 Y 1 A MET 1 A MET 1 1 Y 1 A ASP 2 A ASP 2 1 Y 1 A ALA 3 A ALA 3 1 Y 1 A ASP 65 A ASP 65 1 Y 1 A ARG 66 A ARG 66 1 Y 1 A GLU 67 A GLU 67 1 Y 1 A GLY 252 A GLY 252 1 Y 1 A ALA 54 -114.61 -159.87 1 A ASP 181 -154.32 63.89 1 A ASP 190 -97.97 35.06 1 A ARG 246 38.33 64.84 34.18 0.209 0.168 0.171 1.87 37.99 1440 19681 7.320 96.7 0.160 1 FREE R-VALUE 1.370 MOLECULAR REPLACEMENT 20.000 0.90 1.10 4XAB ML FLAT BULK SOLVENT MODEL 1.87 37.99 128 2077 16 0 1933 0.009 2103 1.110 2877 15.172 800 0.045 289 0.006 388 0.2278 0.1890 1.9295 135 1726 93.00 0.2152 0.1740 2.0068 145 1823 99.00 0.2231 0.1728 2.0981 144 1842 99.00 0.2155 0.1697 2.2087 141 1824 99.00 0.2252 0.1679 2.3471 149 1845 98.00 0.2290 0.1746 2.5283 142 1830 98.00 0.2351 0.1836 2.7826 143 1839 98.00 0.2250 0.1793 3.1851 147 1827 97.00 0.2124 0.1561 4.0122 143 1838 95.00 0.1747 0.1609 37.9992 151 1847 92.00 25.90 1.870 50.000 4XAC 19714 0.07400 1 14.0000 5.700 97.2 0.32400 1.87 1.94 1 5.70 98.7 refinement PHENIX dev_1839 data reduction HKL-2000 data extraction PDB_EXTRACT 3.15 data scaling HKL-2000 phasing PHASER Crystal Structure of EvdO2 from Micromonospora carbonacea var. aurantiaca complexed with 2-oxoglutarate 1 N N 2 N N 3 N N 4 N N 5 N N A ASP 11 A ASP 11 HELX_P A GLY 22 A GLY 22 1 AA1 12 A SER 31 A SER 31 HELX_P A PHE 46 A PHE 46 1 AA2 16 A PRO 78 A PRO 78 HELX_P A TYR 81 A TYR 81 5 AA3 4 A VAL 82 A VAL 82 HELX_P A ASP 87 A ASP 87 5 AA4 6 A SER 88 A SER 88 HELX_P A ASP 103 A ASP 103 1 AA5 16 A ALA 105 A ALA 105 HELX_P A LEU 109 A LEU 109 5 AA6 5 A GLN 130 A GLN 130 HELX_P A MET 135 A MET 135 5 AA7 6 A GLY 165 A GLY 165 HELX_P A GLY 169 A GLY 169 5 AA8 5 A ASP 181 A ASP 181 HELX_P A ARG 184 A ARG 184 5 AA9 4 A ASP 192 A ASP 192 HELX_P A ALA 196 A ALA 196 5 AB1 5 metalc 2.084 A HIS 129 A NE2 HIS 129 1_555 A NI 301 B NI NI 1_555 metalc 2.048 A ASP 131 A OD1 ASP 131 1_555 A NI 301 B NI NI 1_555 metalc 2.086 A HIS 215 A NE2 HIS 215 1_555 A NI 301 B NI NI 1_555 metalc 2.010 A NI 301 B NI NI 1_555 A IMD 302 C N3 IMD 1_555 metalc 2.059 A NI 301 B NI NI 1_555 A AKG 303 D O2 AKG 1_555 metalc 2.072 A NI 301 B NI NI 1_555 A AKG 303 D O5 AKG 1_555 OXIDOREDUCTASE oxidoreductase, double stranded beta helix 4XAC PDB 1 1 4XAC 1 252 4XAC 1 252 4XAC A 1 1 252 6 2 4 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A PHE 23 A PHE 23 A LEU 26 A LEU 26 A ALA 206 A ALA 206 A ASP 210 A ASP 210 A GLY 143 A GLY 143 A THR 149 A THR 149 A ARG 226 A ARG 226 A MET 234 A MET 234 A GLU 110 A GLU 110 A LYS 118 A LYS 118 A GLN 74 A GLN 74 A ILE 76 A ILE 76 A ARG 48 A ARG 48 A ARG 49 A ARG 49 A PHE 57 A PHE 57 A TYR 58 A TYR 58 A THR 126 A THR 126 A HIS 129 A HIS 129 A HIS 215 A HIS 215 A ALA 217 A ALA 217 A LEU 160 A LEU 160 A TYR 162 A TYR 162 A VAL 197 A VAL 197 A CYS 199 A CYS 199 A TRP 139 A TRP 139 A ARG 140 A ARG 140 A ALA 238 A ALA 238 A GLU 239 A GLU 239 A HIS 175 A HIS 175 A HIS 176 A HIS 176 A LEU 186 A LEU 186 A MET 187 A MET 187 binding site for residue NI A 301 A NI 301 Software 5 binding site for residue IMD A 302 A IMD 302 Software 5 binding site for residue AKG A 303 A AKG 303 Software 13 A HIS 129 A HIS 129 5 1_555 A ASP 131 A ASP 131 5 1_555 A HIS 215 A HIS 215 5 1_555 A IMD 302 C IMD 5 1_555 A AKG 303 D AKG 5 1_555 A HIS 129 A HIS 129 5 1_555 A ASP 131 A ASP 131 5 1_555 A NI 301 B NI 5 1_555 A AKG 303 D AKG 5 1_555 A HOH 521 E HOH 5 1_555 A ILE 116 A ILE 116 13 1_555 A LYS 118 A LYS 118 13 1_555 A THR 126 A THR 126 13 1_555 A HIS 129 A HIS 129 13 1_555 A ASP 131 A ASP 131 13 1_555 A TRP 147 A TRP 147 13 1_555 A HIS 209 A HIS 209 13 1_555 A HIS 215 A HIS 215 13 1_555 A ALA 217 A ALA 217 13 1_555 A ARG 226 A ARG 226 13 1_555 A NI 301 B NI 13 1_555 A IMD 302 C IMD 13 1_555 A HOH 460 E HOH 13 1_555 19 P 21 21 21