0.017739 0.000000 0.000000 0.000000 0.010293 0.000000 0.000000 0.000000 0.007808 0.00000 0.00000 0.00000 Griese, J.J. Hogbom, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 56.374 97.153 128.067 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mn 2 54.938 MANGANESE (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C16 H32 O2 256.424 PALMITIC ACID non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N MN N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C Y 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N C N 261 N O N 262 N O N 263 N C N 264 N C N 265 N C N 266 N C N 267 N C N 268 N C N 269 N C N 270 N C N 271 N C N 272 N C N 273 N C N 274 N C N 275 N C N 276 N C N 277 N C N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N N N 311 S C N 312 N C N 313 N O N 314 N C N 315 N C N 316 N C N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C N 332 N O N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 R C N 346 N O N 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N N Y 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N N N 386 S C N 387 N C N 388 N O N 389 N C Y 390 N C Y 391 N C Y 392 N C Y 393 N C Y 394 N C Y 395 N C N 396 N O N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N N N 410 S C N 411 N C N 412 N O N 413 N C N 414 N C N 415 N C N 416 N O N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing Y 353 N doub Y 354 N sing Y 355 N sing N 356 N sing Y 357 N doub Y 358 N sing Y 359 N sing N 360 N sing Y 361 N sing Y 362 N doub N 363 N sing Y 364 N doub N 365 N sing Y 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing Y 381 N doub Y 382 N sing Y 383 N sing N 384 N sing Y 385 N doub N 386 N sing Y 387 N doub N 388 N sing Y 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing US J.Biol.Chem. JBCHA3 0071 1083-351X 290 25254 25272 10.1074/jbc.M115.675223 26324712 Structural Basis for Oxygen Activation at a Heterodinuclear Manganese/Iron Cofactor. 2015 10.2210/pdb4xbw/pdb pdb_00004xbw 100 1 CCD 2012-05-03 RAYONIX MX-225 Si(111) SINGLE WAVELENGTH M x-ray 1 0.918410 1.0 14.1 BESSY 0.918410 SYNCHROTRON BESSY BEAMLINE 14.1 36962.809 Ribonucleotide reductase small subunit 1.17.4.1 1 man polymer 54.938 MANGANESE (II) ION 3 syn non-polymer 256.424 PALMITIC ACID 1 syn non-polymer 18.015 water 53 nat water R2-LIKE LIGAND-BINDING OXIDASE no no MAHHHHHHVDDDDKMVHHDGFQTVKATIDWEHPMFKLYEKAKRNGKWNPADIDFSQDQKDFASLTSEEKISALPLVAGFS AGEEAVTLDILPMAHALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKRIFYEALPEAMNRL YADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYYEL FIRYMDELWPHVIGYVDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQISRTKRVDVVEGLEKTAAES MAHHHHHHVDDDDKMVHHDGFQTVKATIDWEHPMFKLYEKAKRNGKWNPADIDFSQDQKDFASLTSEEKISALPLVAGFS AGEEAVTLDILPMAHALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKRIFYEALPEAMNRL YADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYYEL FIRYMDELWPHVIGYVDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQISRTKRVDVVEGLEKTAAES A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 316 GK2771 235909 Geobacillus kaustophilus (strain HTA426) 469008 Escherichia coli BL21(DE3) Plasmid Biological sequence pET-46 Ek/LIC 1 2.37 48.15 VAPOR DIFFUSION, HANGING DROP 7.0 22.5 % (w/v) PEG1500, 0.1 M HEPES-Na, pH 7.0, 22.5 % (w/v) PEG1500, 0.1 M HEPES-Na, pH 7.0 295 atom_site chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn repository Initial release Database references Atomic model Data collection Database references Derived calculations Refinement description 1 0 2015-09-09 1 1 2015-10-28 2 0 2024-01-10 _atom_site.occupancy _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id 4HR0 contains the same protein with aerobically reconstituted Mn/Fe cofactor. 4HR4 contains the same protein with anaerobically reconstituted Mn/Fe cofactor. 4HR5 contains the same protein without metal cofactor. 4XB9 contains the same protein with aerobically reconstituted diiron cofactor. 4XBV contains the same protein with anaerobically reconstituted diiron cofactor. N RCSB Y PDBE 2014-12-17 REL REL MN MANGANESE (II) ION PLM PALMITIC ACID HOH water 4HR4 PDB experimental model MN 1 2 MN MN 401 A MN 2 2 MN MN 402 A MN 3 2 MN MN 403 A PLM 1 3 PLM PLM 404 A HOH 47 4 HOH HOH 501 A HOH 7 4 HOH HOH 502 A HOH 4 4 HOH HOH 503 A HOH 18 4 HOH HOH 504 A HOH 41 4 HOH HOH 505 A HOH 34 4 HOH HOH 506 A HOH 36 4 HOH HOH 507 A HOH 31 4 HOH HOH 508 A HOH 23 4 HOH HOH 509 A HOH 24 4 HOH HOH 510 A HOH 46 4 HOH HOH 511 A HOH 54 4 HOH HOH 512 A HOH 17 4 HOH HOH 513 A HOH 11 4 HOH HOH 514 A HOH 16 4 HOH HOH 515 A HOH 29 4 HOH HOH 516 A HOH 49 4 HOH HOH 517 A HOH 42 4 HOH HOH 518 A HOH 32 4 HOH HOH 519 A HOH 45 4 HOH HOH 520 A HOH 1 4 HOH HOH 521 A HOH 2 4 HOH HOH 522 A HOH 3 4 HOH HOH 523 A HOH 5 4 HOH HOH 524 A HOH 6 4 HOH HOH 525 A HOH 8 4 HOH HOH 526 A HOH 9 4 HOH HOH 527 A HOH 10 4 HOH HOH 528 A HOH 12 4 HOH HOH 529 A HOH 13 4 HOH HOH 530 A HOH 14 4 HOH HOH 531 A HOH 15 4 HOH HOH 532 A HOH 19 4 HOH HOH 533 A HOH 20 4 HOH HOH 534 A HOH 21 4 HOH HOH 535 A HOH 22 4 HOH HOH 536 A HOH 25 4 HOH HOH 537 A HOH 26 4 HOH HOH 538 A HOH 27 4 HOH HOH 539 A HOH 28 4 HOH HOH 540 A HOH 30 4 HOH HOH 541 A HOH 33 4 HOH HOH 542 A HOH 35 4 HOH HOH 543 A HOH 37 4 HOH HOH 544 A HOH 38 4 HOH HOH 545 A HOH 39 4 HOH HOH 546 A HOH 40 4 HOH HOH 547 A HOH 43 4 HOH HOH 548 A HOH 50 4 HOH HOH 549 A HOH 51 4 HOH HOH 550 A HOH 53 4 HOH HOH 551 A HOH 56 4 HOH HOH 552 A HOH 57 4 HOH HOH 553 A C 2 n 1 -13 A n 2 -12 A n 3 -11 A n 4 -10 A n 5 -9 A n 6 -8 A n 7 -7 A n 8 -6 A n 9 -5 A n 10 -4 A n 11 -3 A n 12 -2 A n 13 -1 A n 14 0 A n 15 1 A n 16 2 A n 17 3 A n 18 4 A n 19 5 A n 20 6 A n 21 7 A n 22 8 A n 23 9 A n 24 10 A n 25 11 A n 26 12 A THR 13 n 27 THR 13 A ILE 14 n 28 ILE 14 A ASP 15 n 29 ASP 15 A TRP 16 n 30 TRP 16 A GLU 17 n 31 GLU 17 A HIS 18 n 32 HIS 18 A PRO 19 n 33 PRO 19 A MET 20 n 34 MET 20 A PHE 21 n 35 PHE 21 A LYS 22 n 36 LYS 22 A LEU 23 n 37 LEU 23 A TYR 24 n 38 TYR 24 A GLU 25 n 39 GLU 25 A LYS 26 n 40 LYS 26 A ALA 27 n 41 ALA 27 A LYS 28 n 42 LYS 28 A ARG 29 n 43 ARG 29 A ASN 30 n 44 ASN 30 A GLY 31 n 45 GLY 31 A LYS 32 n 46 LYS 32 A TRP 33 n 47 TRP 33 A ASN 34 n 48 ASN 34 A PRO 35 n 49 PRO 35 A ALA 36 n 50 ALA 36 A ASP 37 n 51 ASP 37 A ILE 38 n 52 ILE 38 A ASP 39 n 53 ASP 39 A PHE 40 n 54 PHE 40 A SER 41 n 55 SER 41 A GLN 42 n 56 GLN 42 A ASP 43 n 57 ASP 43 A GLN 44 n 58 GLN 44 A LYS 45 n 59 LYS 45 A ASP 46 n 60 ASP 46 A PHE 47 n 61 PHE 47 A ALA 48 n 62 ALA 48 A SER 49 n 63 SER 49 A LEU 50 n 64 LEU 50 A THR 51 n 65 THR 51 A SER 52 n 66 SER 52 A GLU 53 n 67 GLU 53 A GLU 54 n 68 GLU 54 A LYS 55 n 69 LYS 55 A ILE 56 n 70 ILE 56 A SER 57 n 71 SER 57 A ALA 58 n 72 ALA 58 A LEU 59 n 73 LEU 59 A PRO 60 n 74 PRO 60 A LEU 61 n 75 LEU 61 A VAL 62 n 76 VAL 62 A ALA 63 n 77 ALA 63 A GLY 64 n 78 GLY 64 A PHE 65 n 79 PHE 65 A SER 66 n 80 SER 66 A ALA 67 n 81 ALA 67 A GLY 68 n 82 GLY 68 A GLU 69 n 83 GLU 69 A GLU 70 n 84 GLU 70 A ALA 71 n 85 ALA 71 A VAL 72 n 86 VAL 72 A THR 73 n 87 THR 73 A LEU 74 n 88 LEU 74 A ASP 75 n 89 ASP 75 A ILE 76 n 90 ILE 76 A LEU 77 n 91 LEU 77 A PRO 78 n 92 PRO 78 A MET 79 n 93 MET 79 A ALA 80 n 94 ALA 80 A HIS 81 n 95 HIS 81 A ALA 82 n 96 ALA 82 A LEU 83 n 97 LEU 83 A ALA 84 n 98 ALA 84 A ARG 85 n 99 ARG 85 A GLN 86 n 100 GLN 86 A GLY 87 n 101 GLY 87 A ARG 88 n 102 ARG 88 A LEU 89 n 103 LEU 89 A GLU 90 n 104 GLU 90 A ASP 91 n 105 ASP 91 A VAL 92 n 106 VAL 92 A LEU 93 n 107 LEU 93 A PHE 94 n 108 PHE 94 A LEU 95 n 109 LEU 95 A THR 96 n 110 THR 96 A THR 97 n 111 THR 97 A PHE 98 n 112 PHE 98 A MET 99 n 113 MET 99 A HIS 100 n 114 HIS 100 A ASP 101 n 115 ASP 101 A GLU 102 n 116 GLU 102 A ALA 103 n 117 ALA 103 A LYS 104 n 118 LYS 104 A HIS 105 n 119 HIS 105 A VAL 106 n 120 VAL 106 A GLU 107 n 121 GLU 107 A MET 108 n 122 MET 108 A PHE 109 n 123 PHE 109 A SER 110 n 124 SER 110 A ARG 111 n 125 ARG 111 A TRP 112 n 126 TRP 112 A GLN 113 n 127 GLN 113 A GLN 114 n 128 GLN 114 A ALA 115 n 129 ALA 115 A VAL 116 n 130 VAL 116 A GLY 117 n 131 GLY 117 A ILE 118 n 132 ILE 118 A GLY 119 n 133 GLY 119 A GLN 120 n 134 GLN 120 A MET 121 n 135 MET 121 A ASP 122 n 136 ASP 122 A LEU 123 n 137 LEU 123 A SER 124 n 138 SER 124 A VAL 125 n 139 VAL 125 A PHE 126 n 140 PHE 126 A HIS 127 n 141 HIS 127 A ASN 128 n 142 ASN 128 A ASP 129 n 143 ASP 129 A HIS 130 n 144 HIS 130 A TYR 131 n 145 TYR 131 A LYS 132 n 146 LYS 132 A ARG 133 n 147 ARG 133 A ILE 134 n 148 ILE 134 A PHE 135 n 149 PHE 135 A TYR 136 n 150 TYR 136 A GLU 137 n 151 GLU 137 A ALA 138 n 152 ALA 138 A LEU 139 n 153 LEU 139 A PRO 140 n 154 PRO 140 A GLU 141 n 155 GLU 141 A ALA 142 n 156 ALA 142 A MET 143 n 157 MET 143 A ASN 144 n 158 ASN 144 A ARG 145 n 159 ARG 145 A LEU 146 n 160 LEU 146 A TYR 147 n 161 TYR 147 A ALA 148 n 162 ALA 148 A ASP 149 n 163 ASP 149 A ASP 150 n 164 ASP 150 A SER 151 n 165 SER 151 A PRO 152 n 166 PRO 152 A GLU 153 n 167 GLU 153 A ALA 154 n 168 ALA 154 A VAL 155 n 169 VAL 155 A ILE 156 n 170 ILE 156 A ARG 157 n 171 ARG 157 A ALA 158 n 172 ALA 158 A ALA 159 n 173 ALA 159 A THR 160 n 174 THR 160 A VAL 161 n 175 VAL 161 A TYR 162 n 176 TYR 162 A ASN 163 n 177 ASN 163 A MET 164 n 178 MET 164 A ILE 165 n 179 ILE 165 A VAL 166 n 180 VAL 166 A GLU 167 n 181 GLU 167 A GLY 168 n 182 GLY 168 A THR 169 n 183 THR 169 A LEU 170 n 184 LEU 170 A ALA 171 n 185 ALA 171 A GLU 172 n 186 GLU 172 A SER 173 n 187 SER 173 A GLY 174 n 188 GLY 174 A TYR 175 n 189 TYR 175 A TYR 176 n 190 TYR 176 A THR 177 n 191 THR 177 A PHE 178 n 192 PHE 178 A ARG 179 n 193 ARG 179 A GLN 180 n 194 GLN 180 A ILE 181 n 195 ILE 181 A TYR 182 n 196 TYR 182 A LYS 183 n 197 LYS 183 A LYS 184 n 198 LYS 184 A ALA 185 n 199 ALA 185 A GLY 186 n 200 GLY 186 A LEU 187 n 201 LEU 187 A PHE 188 n 202 PHE 188 A PRO 189 n 203 PRO 189 A GLY 190 n 204 GLY 190 A LEU 191 n 205 LEU 191 A LEU 192 n 206 LEU 192 A GLN 193 n 207 GLN 193 A GLY 194 n 208 GLY 194 A ILE 195 n 209 ILE 195 A ASP 196 n 210 ASP 196 A TYR 197 n 211 TYR 197 A LEU 198 n 212 LEU 198 A ASN 199 n 213 ASN 199 A MET 200 n 214 MET 200 A ASP 201 n 215 ASP 201 A GLU 202 n 216 GLU 202 A GLY 203 n 217 GLY 203 A ARG 204 n 218 ARG 204 A HIS 205 n 219 HIS 205 A ILE 206 n 220 ILE 206 A GLN 207 n 221 GLN 207 A PHE 208 n 222 PHE 208 A GLY 209 n 223 GLY 209 A ILE 210 n 224 ILE 210 A TYR 211 n 225 TYR 211 A THR 212 n 226 THR 212 A ILE 213 n 227 ILE 213 A GLN 214 n 228 GLN 214 A ARG 215 n 229 ARG 215 A ILE 216 n 230 ILE 216 A VAL 217 n 231 VAL 217 A ASN 218 n 232 ASN 218 A GLU 219 n 233 GLU 219 A ASP 220 n 234 ASP 220 A GLU 221 n 235 GLU 221 A ARG 222 n 236 ARG 222 A TYR 223 n 237 TYR 223 A TYR 224 n 238 TYR 224 A GLU 225 n 239 GLU 225 A LEU 226 n 240 LEU 226 A PHE 227 n 241 PHE 227 A ILE 228 n 242 ILE 228 A ARG 229 n 243 ARG 229 A TYR 230 n 244 TYR 230 A MET 231 n 245 MET 231 A ASP 232 n 246 ASP 232 A GLU 233 n 247 GLU 233 A LEU 234 n 248 LEU 234 A TRP 235 n 249 TRP 235 A PRO 236 n 250 PRO 236 A HIS 237 n 251 HIS 237 A VAL 238 n 252 VAL 238 A ILE 239 n 253 ILE 239 A GLY 240 n 254 GLY 240 A TYR 241 n 255 TYR 241 A VAL 242 n 256 VAL 242 A ASP 243 n 257 ASP 243 A TYR 244 n 258 TYR 244 A LEU 245 n 259 LEU 245 A THR 246 n 260 THR 246 A GLU 247 n 261 GLU 247 A LEU 248 n 262 LEU 248 A GLY 249 n 263 GLY 249 A LYS 250 n 264 LYS 250 A ARG 251 n 265 ARG 251 A GLN 252 n 266 GLN 252 A GLN 253 n 267 GLN 253 A GLN 254 n 268 GLN 254 A LEU 255 n 269 LEU 255 A ALA 256 n 270 ALA 256 A ARG 257 n 271 ARG 257 A THR 258 n 272 THR 258 A TYR 259 n 273 TYR 259 A ALA 260 n 274 ALA 260 A LEU 261 n 275 LEU 261 A GLU 262 n 276 GLU 262 A ILE 263 n 277 ILE 263 A ASP 264 n 278 ASP 264 A TYR 265 n 279 TYR 265 A ASP 266 n 280 ASP 266 A LEU 267 n 281 LEU 267 A LEU 268 n 282 LEU 268 A ARG 269 n 283 ARG 269 A HIS 270 n 284 HIS 270 A TYR 271 n 285 TYR 271 A VAL 272 n 286 VAL 272 A ILE 273 n 287 ILE 273 A LYS 274 n 288 LYS 274 A GLN 275 n 289 GLN 275 A PHE 276 n 290 PHE 276 A ASN 277 n 291 ASN 277 A LEU 278 n 292 LEU 278 A ARG 279 n 293 ARG 279 A LYS 280 n 294 LYS 280 A LYS 281 n 295 LYS 281 A GLN 282 n 296 GLN 282 A ILE 283 n 297 ILE 283 A SER 284 n 298 SER 284 A ARG 285 n 299 ARG 285 A THR 286 n 300 THR 286 A n 301 287 A n 302 288 A n 303 289 A n 304 290 A n 305 291 A n 306 292 A n 307 293 A n 308 294 A n 309 295 A n 310 296 A n 311 297 A n 312 298 A n 313 299 A n 314 300 A n 315 301 A n 316 302 A author_and_software_defined_assembly PISA 2 dimeric 5370 -42 21270 A GLU 69 A OE2 GLU 83 1_555 A MN 401 B MN MN 1_555 A GLU 102 A OE2 GLU 116 1_555 95.5 A GLU 69 A OE2 GLU 83 1_555 A MN 401 B MN MN 1_555 A HIS 105 A ND1 HIS 119 1_555 99.2 A GLU 102 A OE2 GLU 116 1_555 A MN 401 B MN MN 1_555 A HIS 105 A ND1 HIS 119 1_555 89.7 A GLU 69 A OE2 GLU 83 1_555 A MN 401 B MN MN 1_555 A GLU 202 A OE1 GLU 216 1_555 158.8 A GLU 102 A OE2 GLU 116 1_555 A MN 401 B MN MN 1_555 A GLU 202 A OE1 GLU 216 1_555 103.5 A HIS 105 A ND1 HIS 119 1_555 A MN 401 B MN MN 1_555 A GLU 202 A OE1 GLU 216 1_555 90.3 A GLU 69 A OE2 GLU 83 1_555 A MN 401 B MN MN 1_555 A PLM 404 E O1 PLM 1_555 85.6 A GLU 102 A OE2 GLU 116 1_555 A MN 401 B MN MN 1_555 A PLM 404 E O1 PLM 1_555 108.0 A HIS 105 A ND1 HIS 119 1_555 A MN 401 B MN MN 1_555 A PLM 404 E O1 PLM 1_555 161.2 A GLU 202 A OE1 GLU 216 1_555 A MN 401 B MN MN 1_555 A PLM 404 E O1 PLM 1_555 79.8 A GLU 102 A OE1 GLU 116 1_555 A MN 402 C MN MN 1_555 A GLU 167 A OE2 GLU 181 1_555 96.7 A GLU 102 A OE1 GLU 116 1_555 A MN 402 C MN MN 1_555 A GLU 202 A OE1 GLU 216 1_555 105.2 A GLU 167 A OE2 GLU 181 1_555 A MN 402 C MN MN 1_555 A GLU 202 A OE1 GLU 216 1_555 157.3 A GLU 102 A OE1 GLU 116 1_555 A MN 402 C MN MN 1_555 A GLU 202 A OE2 GLU 216 1_555 164.7 A GLU 167 A OE2 GLU 181 1_555 A MN 402 C MN MN 1_555 A GLU 202 A OE2 GLU 216 1_555 98.6 A GLU 202 A OE1 GLU 216 1_555 A MN 402 C MN MN 1_555 A GLU 202 A OE2 GLU 216 1_555 59.6 A GLU 102 A OE1 GLU 116 1_555 A MN 402 C MN MN 1_555 A HIS 205 A ND1 HIS 219 1_555 84.8 A GLU 167 A OE2 GLU 181 1_555 A MN 402 C MN MN 1_555 A HIS 205 A ND1 HIS 219 1_555 94.4 A GLU 202 A OE1 GLU 216 1_555 A MN 402 C MN MN 1_555 A HIS 205 A ND1 HIS 219 1_555 93.4 A GLU 202 A OE2 GLU 216 1_555 A MN 402 C MN MN 1_555 A HIS 205 A ND1 HIS 219 1_555 93.8 A GLU 102 A OE1 GLU 116 1_555 A MN 402 C MN MN 1_555 A PLM 404 E O2 PLM 1_555 75.7 A GLU 167 A OE2 GLU 181 1_555 A MN 402 C MN MN 1_555 A PLM 404 E O2 PLM 1_555 83.9 A GLU 202 A OE1 GLU 216 1_555 A MN 402 C MN MN 1_555 A PLM 404 E O2 PLM 1_555 95.7 A GLU 202 A OE2 GLU 216 1_555 A MN 402 C MN MN 1_555 A PLM 404 E O2 PLM 1_555 106.2 A HIS 205 A ND1 HIS 219 1_555 A MN 402 C MN MN 1_555 A PLM 404 E O2 PLM 1_555 160.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 A HOH 506 F HOH 1 A HOH 509 F HOH 1 A MET -13 A MET 1 1 Y 1 A ALA -12 A ALA 2 1 Y 1 A HIS -11 A HIS 3 1 Y 1 A HIS -10 A HIS 4 1 Y 1 A HIS -9 A HIS 5 1 Y 1 A HIS -8 A HIS 6 1 Y 1 A HIS -7 A HIS 7 1 Y 1 A HIS -6 A HIS 8 1 Y 1 A VAL -5 A VAL 9 1 Y 1 A ASP -4 A ASP 10 1 Y 1 A ASP -3 A ASP 11 1 Y 1 A ASP -2 A ASP 12 1 Y 1 A ASP -1 A ASP 13 1 Y 1 A LYS 0 A LYS 14 1 Y 1 A MET 1 A MET 15 1 Y 1 A VAL 2 A VAL 16 1 Y 1 A HIS 3 A HIS 17 1 Y 1 A HIS 4 A HIS 18 1 Y 1 A ASP 5 A ASP 19 1 Y 1 A GLY 6 A GLY 20 1 Y 1 A PHE 7 A PHE 21 1 Y 1 A GLN 8 A GLN 22 1 Y 1 A THR 9 A THR 23 1 Y 1 A VAL 10 A VAL 24 1 Y 1 A LYS 11 A LYS 25 1 Y 1 A ALA 12 A ALA 26 1 Y 1 A LYS 287 A LYS 301 1 Y 1 A ARG 288 A ARG 302 1 Y 1 A VAL 289 A VAL 303 1 Y 1 A ASP 290 A ASP 304 1 Y 1 A VAL 291 A VAL 305 1 Y 1 A VAL 292 A VAL 306 1 Y 1 A GLU 293 A GLU 307 1 Y 1 A GLY 294 A GLY 308 1 Y 1 A LEU 295 A LEU 309 1 Y 1 A GLU 296 A GLU 310 1 Y 1 A LYS 297 A LYS 311 1 Y 1 A THR 298 A THR 312 1 Y 1 A ALA 299 A ALA 313 1 Y 1 A ALA 300 A ALA 314 1 Y 1 A GLU 301 A GLU 315 1 Y 1 A SER 302 A SER 316 1 Y 1 A A OE2 HE GLU ARG 221 285 1.57 1 A A CB CG GLU GLU 262 262 0.127 0.019 1.517 1.644 N 1 A MET 121 -39.57 115.14 1 A GLU 137 -130.79 -66.58 1 A ILE 165 -98.08 -62.18 1 A THR 169 -120.63 -56.11 1 A ILE 181 -97.11 -63.58 1 A ASP 220 -160.11 102.51 1 A GLU 221 -59.98 -7.47 55.4 0.2243 0.1773 0.1796 1.991 48.760 1222 24403 5.01 99.50 0.24 random selection 1 FREE R-VALUE 1.99 FOURIER SYNTHESIS 23.04 0.90 1.11 4HR4 ML FLAT BULK SOLVENT MODEL 1.991 48.760 53 2344 21 0 2270 0.022 2355 1.313 3161 16.022 876 0.061 330 0.008 407 0.3179 0.2751 2.0711 132 2521 98.00 0.2711 0.2441 2.1654 134 2541 100.00 0.2592 0.2031 2.2796 132 2539 100.00 0.2128 0.1911 2.4224 137 2545 100.00 0.2235 0.1823 2.6094 136 2568 100.00 0.2486 0.1846 2.8720 133 2576 100.00 0.2277 0.1922 3.2875 138 2589 100.00 0.2027 0.1661 4.1415 137 2609 100.00 0.2144 0.1528 48.7744 143 2693 98.00 38.12 1.99 50.00 4XBW 24406 -3.00 0.037 1 21.93 4.1 99.5 0.732 1.99 2.11 1.92 1 4.1 98.7 refinement PHENIX (phenix.refine: dev_1606) data reduction XDS model building Coot data scaling XSCALE R2-like ligand-binding oxidase with aerobically reconstituted dimanganese cofactor 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N A HIS 18 A HIS 32 HELX_P A GLY 31 A GLY 45 1 AA1 14 A ASN 34 A ASN 48 HELX_P A ILE 38 A ILE 52 5 AA2 5 A PHE 40 A PHE 54 HELX_P A LEU 50 A LEU 64 1 AA3 11 A THR 51 A THR 65 HELX_P A ILE 76 A ILE 90 1 AA4 26 A ILE 76 A ILE 90 HELX_P A GLN 86 A GLN 100 1 AA5 11 A ARG 88 A ARG 102 HELX_P A GLY 117 A GLY 131 1 AA6 30 A ASP 122 A ASP 136 HELX_P A HIS 127 A HIS 141 5 AA7 6 A ASN 128 A ASN 142 HELX_P A TYR 136 A TYR 150 1 AA8 9 A GLU 137 A GLU 151 HELX_P A ARG 145 A ARG 159 1 AA9 9 A LEU 146 A LEU 160 HELX_P A ALA 148 A ALA 162 5 AB1 3 A SER 151 A SER 165 HELX_P A ASN 163 A ASN 177 1 AB2 13 A THR 169 A THR 183 HELX_P A GLY 186 A GLY 200 1 AB3 18 A PHE 188 A PHE 202 HELX_P A ASN 218 A ASN 232 1 AB4 31 A GLU 221 A GLU 235 HELX_P A GLN 252 A GLN 266 1 AB5 32 A GLN 253 A GLN 267 HELX_P A TYR 259 A TYR 273 1 AB6 7 A ASP 264 A ASP 278 HELX_P A GLN 282 A GLN 296 1 AB7 19 metalc 2.098 A GLU 69 A OE2 GLU 83 1_555 A MN 401 B MN MN 1_555 metalc 2.123 A GLU 102 A OE2 GLU 116 1_555 A MN 401 B MN MN 1_555 metalc 2.203 A GLU 102 A OE1 GLU 116 1_555 A MN 402 C MN MN 1_555 metalc 2.151 A HIS 105 A ND1 HIS 119 1_555 A MN 401 B MN MN 1_555 metalc 2.286 A HIS 130 A NE2 HIS 144 1_555 A MN 403 D MN MN 1_555 metalc 1.981 A GLU 167 A OE2 GLU 181 1_555 A MN 402 C MN MN 1_555 metalc 2.408 A GLU 202 A OE1 GLU 216 1_555 A MN 401 B MN MN 1_555 metalc 2.352 A GLU 202 A OE1 GLU 216 1_555 A MN 402 C MN MN 1_555 metalc 2.220 A GLU 202 A OE2 GLU 216 1_555 A MN 402 C MN MN 1_555 metalc 2.274 A HIS 205 A ND1 HIS 219 1_555 A MN 402 C MN MN 1_555 metalc 1.515 A MN 401 B MN MN 1_555 A PLM 404 E O1 PLM 1_555 metalc 2.010 A MN 402 C MN MN 1_555 A PLM 404 E O2 PLM 1_555 OXIDOREDUCTASE R2-like ligand-binding oxidase, dimanganese cofactor, ribonucleotide reductase R2 subunit fold, metalloprotein, oxidoreductase Q5KW80_GEOKA UNP 1 1 Q5KW80 MVHHDGFQTVKATIDWEHPMFKLYEKAKRNGKWNPADIDFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMA HALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKRIFYEALPEAMNRLYADDSPEAVIRAAT VYNMIVEGTLAESGYYTFRQIYKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYYELFIRYMDELWPHVIG YVDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQISRTKRVDVVEGLEKTAAES 1 302 4XBW 1 302 Q5KW80 A 1 15 316 1 initiating methionine MET -13 4XBW A Q5KW80 UNP 1 1 expression tag ALA -12 4XBW A Q5KW80 UNP 2 1 expression tag HIS -11 4XBW A Q5KW80 UNP 3 1 expression tag HIS -10 4XBW A Q5KW80 UNP 4 1 expression tag HIS -9 4XBW A Q5KW80 UNP 5 1 expression tag HIS -8 4XBW A Q5KW80 UNP 6 1 expression tag HIS -7 4XBW A Q5KW80 UNP 7 1 expression tag HIS -6 4XBW A Q5KW80 UNP 8 1 expression tag VAL -5 4XBW A Q5KW80 UNP 9 1 expression tag ASP -4 4XBW A Q5KW80 UNP 10 1 expression tag ASP -3 4XBW A Q5KW80 UNP 11 1 expression tag ASP -2 4XBW A Q5KW80 UNP 12 1 expression tag ASP -1 4XBW A Q5KW80 UNP 13 1 expression tag LYS 0 4XBW A Q5KW80 UNP 14 binding site for residue MN A 401 A MN 401 Software 6 binding site for residue MN A 402 A MN 402 Software 6 binding site for residue MN A 403 A MN 403 Software 1 binding site for residue PLM A 404 A PLM 404 Software 14 A GLU 69 A GLU 83 6 1_555 A GLU 102 A GLU 116 6 1_555 A HIS 105 A HIS 119 6 1_555 A GLU 202 A GLU 216 6 1_555 A MN 402 C MN 6 1_555 A PLM 404 E PLM 6 1_555 A GLU 102 A GLU 116 6 1_555 A GLU 167 A GLU 181 6 1_555 A GLU 202 A GLU 216 6 1_555 A HIS 205 A HIS 219 6 1_555 A MN 401 B MN 6 1_555 A PLM 404 E PLM 6 1_555 A HIS 130 A HIS 144 1 1_555 A GLY 64 A GLY 78 14 1_555 A PHE 65 A PHE 79 14 1_555 A GLU 69 A GLU 83 14 1_555 A VAL 72 A VAL 86 14 1_555 A GLU 102 A GLU 116 14 1_555 A HIS 105 A HIS 119 14 1_555 A PHE 135 A PHE 149 14 1_555 A GLU 167 A GLU 181 14 1_555 A LEU 170 A LEU 184 14 1_555 A THR 177 A THR 191 14 1_555 A GLU 202 A GLU 216 14 1_555 A LEU 268 A LEU 282 14 1_555 A MN 401 B MN 14 1_555 A MN 402 C MN 14 1_555 23 I 2 2 2