0.013966 0.008064 0.000000 0.000000 0.016127 0.000000 0.000000 0.000000 0.005056 0.00000 0.00000 0.00000 Wong, J. Midtgaard, S. Gysel, K. Thygesen, M.B. Sorensen, K.K. Jensen, K.J. Stougaard, J. Thirup, S. Blaise, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 71.600 71.600 197.790 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Acta Crystallogr.,Sect.D ABCRE6 1399-0047 71 592 605 10.1107/S139900471402793X 25760608 An intermolecular binding mechanism involving multiple LysM domains mediates carbohydrate recognition by an endopeptidase. 2015 100 1 CCD 2012-09-29 MARMOSAIC 225 mm CCD SINGLE WAVELENGTH M x-ray 1 0.979 1.0 I911-3 MAX II 0.979 SYNCHROTRON MAX II BEAMLINE I911-3 26689.967 Cell wall-binding endopeptidase-related protein UNP residues 15-258 2 man polymer 18.015 water 16 nat water no yes AQATYTVAPGDTLYSIARRYGTTVEEL(MSE)RLNGLESFLLQPGQVLKLPSRERTHVVAPGDTLFSLARRYGTTVEAL (MSE)RLNGLSSPEIKVGQVLRLPEEGEAPPPPPPEPEALDPESPLLRAVLRYLGVPYKYGANSPLALDCSAFVAQVYAE LGVALPRTTKEQYQAFPPVEAPRPGDLVFFSFGGKEVDHVGIYLGRGVFAHASSYGSRVVIESLEAPFYRKVYRGARRV (MSE)ASPEPPPAPSATP AQATYTVAPGDTLYSIARRYGTTVEELMRLNGLESFLLQPGQVLKLPSRERTHVVAPGDTLFSLARRYGTTVEALMRLNG LSSPEIKVGQVLRLPEEGEAPPPPPPEPEALDPESPLLRAVLRYLGVPYKYGANSPLALDCSAFVAQVYAELGVALPRTT KEQYQAFPPVEAPRPGDLVFFSFGGKEVDHVGIYLGRGVFAHASSYGSRVVIESLEAPFYRKVYRGARRVMASPEPPPAP SATP A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 244 TTHA0266 300852 Thermus thermophilus HB8 469008 Escherichia coli BL21(DE3) rosetta2 Biological sequence 2.75 55 VAPOR DIFFUSION, SITTING DROP 5.5 0.1 M sodium citrate pH 5.5, 16% PEG 4000, 15% 2-propanol 292 diffrn_source repository Initial release Database references Database references Data collection 1 0 2015-01-14 1 1 2015-03-11 1 2 2016-07-20 1 3 2018-01-17 _diffrn_source.pdbx_synchrotron_site N RCSB Y PDBE 2014-12-18 REL REL HOH water HOH 6 2 HOH HOH 301 A HOH 1 2 HOH HOH 302 A HOH 2 2 HOH HOH 303 A HOH 4 2 HOH HOH 304 A HOH 13 2 HOH HOH 305 A HOH 15 2 HOH HOH 306 A HOH 21 2 HOH HOH 307 A HOH 23 2 HOH HOH 308 A HOH 22 2 HOH HOH 301 B HOH 11 2 HOH HOH 302 B HOH 3 2 HOH HOH 303 B HOH 5 2 HOH HOH 304 B HOH 9 2 HOH HOH 305 B HOH 10 2 HOH HOH 306 B HOH 12 2 HOH HOH 307 B HOH 24 2 HOH HOH 308 B n 1 15 A n 2 16 A ALA 17 n 3 ALA 17 A THR 18 n 4 THR 18 A TYR 19 n 5 TYR 19 A THR 20 n 6 THR 20 A VAL 21 n 7 VAL 21 A ALA 22 n 8 ALA 22 A PRO 23 n 9 PRO 23 A GLY 24 n 10 GLY 24 A ASP 25 n 11 ASP 25 A THR 26 n 12 THR 26 A LEU 27 n 13 LEU 27 A TYR 28 n 14 TYR 28 A SER 29 n 15 SER 29 A ILE 30 n 16 ILE 30 A ALA 31 n 17 ALA 31 A ARG 32 n 18 ARG 32 A ARG 33 n 19 ARG 33 A TYR 34 n 20 TYR 34 A GLY 35 n 21 GLY 35 A THR 36 n 22 THR 36 A THR 37 n 23 THR 37 A VAL 38 n 24 VAL 38 A GLU 39 n 25 GLU 39 A GLU 40 n 26 GLU 40 A LEU 41 n 27 LEU 41 A MSE 42 n 28 MSE 42 A ARG 43 n 29 ARG 43 A LEU 44 n 30 LEU 44 A ASN 45 n 31 ASN 45 A GLY 46 n 32 GLY 46 A LEU 47 n 33 LEU 47 A GLU 48 n 34 GLU 48 A SER 49 n 35 SER 49 A PHE 50 n 36 PHE 50 A LEU 51 n 37 LEU 51 A LEU 52 n 38 LEU 52 A GLN 53 n 39 GLN 53 A PRO 54 n 40 PRO 54 A GLY 55 n 41 GLY 55 A GLN 56 n 42 GLN 56 A VAL 57 n 43 VAL 57 A LEU 58 n 44 LEU 58 A LYS 59 n 45 LYS 59 A LEU 60 n 46 LEU 60 A PRO 61 n 47 PRO 61 A n 48 62 A n 49 63 A n 50 64 A n 51 65 A n 52 66 A n 53 67 A n 54 68 A n 55 69 A n 56 70 A n 57 71 A n 58 72 A n 59 73 A n 60 74 A n 61 75 A n 62 76 A n 63 77 A n 64 78 A n 65 79 A n 66 80 A n 67 81 A n 68 82 A n 69 83 A n 70 84 A n 71 85 A n 72 86 A n 73 87 A n 74 88 A n 75 89 A n 76 90 A n 77 91 A n 78 92 A n 79 93 A n 80 94 A n 81 95 A n 82 96 A n 83 97 A n 84 98 A n 85 99 A n 86 100 A n 87 101 A n 88 102 A n 89 103 A n 90 104 A n 91 105 A n 92 106 A n 93 107 A n 94 108 A n 95 109 A n 96 110 A n 97 111 A n 98 112 A n 99 113 A n 100 114 A n 101 115 A n 102 116 A PRO 117 n 103 PRO 117 A PRO 118 n 104 PRO 118 A PRO 119 n 105 PRO 119 A PRO 120 n 106 PRO 120 A GLU 121 n 107 GLU 121 A PRO 122 n 108 PRO 122 A GLU 123 n 109 GLU 123 A ALA 124 n 110 ALA 124 A LEU 125 n 111 LEU 125 A ASP 126 n 112 ASP 126 A PRO 127 n 113 PRO 127 A GLU 128 n 114 GLU 128 A SER 129 n 115 SER 129 A PRO 130 n 116 PRO 130 A LEU 131 n 117 LEU 131 A LEU 132 n 118 LEU 132 A ARG 133 n 119 ARG 133 A ALA 134 n 120 ALA 134 A VAL 135 n 121 VAL 135 A LEU 136 n 122 LEU 136 A ARG 137 n 123 ARG 137 A TYR 138 n 124 TYR 138 A LEU 139 n 125 LEU 139 A GLY 140 n 126 GLY 140 A VAL 141 n 127 VAL 141 A PRO 142 n 128 PRO 142 A TYR 143 n 129 TYR 143 A LYS 144 n 130 LYS 144 A TYR 145 n 131 TYR 145 A GLY 146 n 132 GLY 146 A ALA 147 n 133 ALA 147 A ASN 148 n 134 ASN 148 A SER 149 n 135 SER 149 A PRO 150 n 136 PRO 150 A LEU 151 n 137 LEU 151 A ALA 152 n 138 ALA 152 A LEU 153 n 139 LEU 153 A ASP 154 n 140 ASP 154 A CYS 155 n 141 CYS 155 A SER 156 n 142 SER 156 A ALA 157 n 143 ALA 157 A PHE 158 n 144 PHE 158 A VAL 159 n 145 VAL 159 A ALA 160 n 146 ALA 160 A GLN 161 n 147 GLN 161 A VAL 162 n 148 VAL 162 A TYR 163 n 149 TYR 163 A ALA 164 n 150 ALA 164 A GLU 165 n 151 GLU 165 A LEU 166 n 152 LEU 166 A GLY 167 n 153 GLY 167 A VAL 168 n 154 VAL 168 A ALA 169 n 155 ALA 169 A LEU 170 n 156 LEU 170 A PRO 171 n 157 PRO 171 A ARG 172 n 158 ARG 172 A THR 173 n 159 THR 173 A THR 174 n 160 THR 174 A LYS 175 n 161 LYS 175 A GLU 176 n 162 GLU 176 A GLN 177 n 163 GLN 177 A TYR 178 n 164 TYR 178 A GLN 179 n 165 GLN 179 A ALA 180 n 166 ALA 180 A PHE 181 n 167 PHE 181 A PRO 182 n 168 PRO 182 A PRO 183 n 169 PRO 183 A VAL 184 n 170 VAL 184 A GLU 185 n 171 GLU 185 A ALA 186 n 172 ALA 186 A PRO 187 n 173 PRO 187 A ARG 188 n 174 ARG 188 A PRO 189 n 175 PRO 189 A GLY 190 n 176 GLY 190 A ASP 191 n 177 ASP 191 A LEU 192 n 178 LEU 192 A VAL 193 n 179 VAL 193 A PHE 194 n 180 PHE 194 A PHE 195 n 181 PHE 195 A SER 196 n 182 SER 196 A PHE 197 n 183 PHE 197 A GLY 198 n 184 GLY 198 A GLY 199 n 185 GLY 199 A LYS 200 n 186 LYS 200 A GLU 201 n 187 GLU 201 A VAL 202 n 188 VAL 202 A ASP 203 n 189 ASP 203 A HIS 204 n 190 HIS 204 A VAL 205 n 191 VAL 205 A GLY 206 n 192 GLY 206 A ILE 207 n 193 ILE 207 A TYR 208 n 194 TYR 208 A LEU 209 n 195 LEU 209 A GLY 210 n 196 GLY 210 A ARG 211 n 197 ARG 211 A GLY 212 n 198 GLY 212 A VAL 213 n 199 VAL 213 A PHE 214 n 200 PHE 214 A ALA 215 n 201 ALA 215 A HIS 216 n 202 HIS 216 A ALA 217 n 203 ALA 217 A SER 218 n 204 SER 218 A SER 219 n 205 SER 219 A TYR 220 n 206 TYR 220 A GLY 221 n 207 GLY 221 A SER 222 n 208 SER 222 A ARG 223 n 209 ARG 223 A VAL 224 n 210 VAL 224 A VAL 225 n 211 VAL 225 A ILE 226 n 212 ILE 226 A GLU 227 n 213 GLU 227 A SER 228 n 214 SER 228 A LEU 229 n 215 LEU 229 A GLU 230 n 216 GLU 230 A ALA 231 n 217 ALA 231 A PRO 232 n 218 PRO 232 A PHE 233 n 219 PHE 233 A TYR 234 n 220 TYR 234 A ARG 235 n 221 ARG 235 A LYS 236 n 222 LYS 236 A VAL 237 n 223 VAL 237 A TYR 238 n 224 TYR 238 A ARG 239 n 225 ARG 239 A GLY 240 n 226 GLY 240 A ALA 241 n 227 ALA 241 A ARG 242 n 228 ARG 242 A ARG 243 n 229 ARG 243 A VAL 244 n 230 VAL 244 A MSE 245 n 231 MSE 245 A ALA 246 n 232 ALA 246 A n 233 247 A n 234 248 A n 235 249 A n 236 250 A n 237 251 A n 238 252 A n 239 253 A n 240 254 A n 241 255 A n 242 256 A n 243 257 A n 244 258 A n 1 15 B n 2 16 B ALA 17 n 3 ALA 17 B THR 18 n 4 THR 18 B TYR 19 n 5 TYR 19 B THR 20 n 6 THR 20 B VAL 21 n 7 VAL 21 B ALA 22 n 8 ALA 22 B PRO 23 n 9 PRO 23 B GLY 24 n 10 GLY 24 B ASP 25 n 11 ASP 25 B THR 26 n 12 THR 26 B LEU 27 n 13 LEU 27 B TYR 28 n 14 TYR 28 B SER 29 n 15 SER 29 B ILE 30 n 16 ILE 30 B ALA 31 n 17 ALA 31 B ARG 32 n 18 ARG 32 B ARG 33 n 19 ARG 33 B TYR 34 n 20 TYR 34 B GLY 35 n 21 GLY 35 B THR 36 n 22 THR 36 B THR 37 n 23 THR 37 B VAL 38 n 24 VAL 38 B GLU 39 n 25 GLU 39 B GLU 40 n 26 GLU 40 B LEU 41 n 27 LEU 41 B MSE 42 n 28 MSE 42 B ARG 43 n 29 ARG 43 B LEU 44 n 30 LEU 44 B ASN 45 n 31 ASN 45 B GLY 46 n 32 GLY 46 B LEU 47 n 33 LEU 47 B GLU 48 n 34 GLU 48 B SER 49 n 35 SER 49 B PHE 50 n 36 PHE 50 B LEU 51 n 37 LEU 51 B LEU 52 n 38 LEU 52 B GLN 53 n 39 GLN 53 B PRO 54 n 40 PRO 54 B GLY 55 n 41 GLY 55 B GLN 56 n 42 GLN 56 B VAL 57 n 43 VAL 57 B LEU 58 n 44 LEU 58 B LYS 59 n 45 LYS 59 B LEU 60 n 46 LEU 60 B PRO 61 n 47 PRO 61 B SER 62 n 48 SER 62 B ARG 63 n 49 ARG 63 B GLU 64 n 50 GLU 64 B ARG 65 n 51 ARG 65 B THR 66 n 52 THR 66 B HIS 67 n 53 HIS 67 B VAL 68 n 54 VAL 68 B VAL 69 n 55 VAL 69 B ALA 70 n 56 ALA 70 B PRO 71 n 57 PRO 71 B GLY 72 n 58 GLY 72 B ASP 73 n 59 ASP 73 B THR 74 n 60 THR 74 B LEU 75 n 61 LEU 75 B PHE 76 n 62 PHE 76 B SER 77 n 63 SER 77 B LEU 78 n 64 LEU 78 B ALA 79 n 65 ALA 79 B ARG 80 n 66 ARG 80 B ARG 81 n 67 ARG 81 B TYR 82 n 68 TYR 82 B GLY 83 n 69 GLY 83 B THR 84 n 70 THR 84 B THR 85 n 71 THR 85 B VAL 86 n 72 VAL 86 B GLU 87 n 73 GLU 87 B ALA 88 n 74 ALA 88 B LEU 89 n 75 LEU 89 B MSE 90 n 76 MSE 90 B ARG 91 n 77 ARG 91 B LEU 92 n 78 LEU 92 B ASN 93 n 79 ASN 93 B GLY 94 n 80 GLY 94 B LEU 95 n 81 LEU 95 B SER 96 n 82 SER 96 B SER 97 n 83 SER 97 B PRO 98 n 84 PRO 98 B GLU 99 n 85 GLU 99 B ILE 100 n 86 ILE 100 B LYS 101 n 87 LYS 101 B VAL 102 n 88 VAL 102 B GLY 103 n 89 GLY 103 B GLN 104 n 90 GLN 104 B VAL 105 n 91 VAL 105 B LEU 106 n 92 LEU 106 B ARG 107 n 93 ARG 107 B LEU 108 n 94 LEU 108 B PRO 109 n 95 PRO 109 B GLU 110 n 96 GLU 110 B n 97 111 B n 98 112 B n 99 113 B n 100 114 B n 101 115 B n 102 116 B n 103 117 B n 104 118 B n 105 119 B n 106 120 B n 107 121 B PRO 122 n 108 PRO 122 B GLU 123 n 109 GLU 123 B ALA 124 n 110 ALA 124 B LEU 125 n 111 LEU 125 B ASP 126 n 112 ASP 126 B PRO 127 n 113 PRO 127 B GLU 128 n 114 GLU 128 B SER 129 n 115 SER 129 B PRO 130 n 116 PRO 130 B LEU 131 n 117 LEU 131 B LEU 132 n 118 LEU 132 B ARG 133 n 119 ARG 133 B ALA 134 n 120 ALA 134 B VAL 135 n 121 VAL 135 B LEU 136 n 122 LEU 136 B ARG 137 n 123 ARG 137 B TYR 138 n 124 TYR 138 B LEU 139 n 125 LEU 139 B GLY 140 n 126 GLY 140 B VAL 141 n 127 VAL 141 B PRO 142 n 128 PRO 142 B TYR 143 n 129 TYR 143 B LYS 144 n 130 LYS 144 B TYR 145 n 131 TYR 145 B GLY 146 n 132 GLY 146 B ALA 147 n 133 ALA 147 B ASN 148 n 134 ASN 148 B SER 149 n 135 SER 149 B PRO 150 n 136 PRO 150 B LEU 151 n 137 LEU 151 B ALA 152 n 138 ALA 152 B LEU 153 n 139 LEU 153 B ASP 154 n 140 ASP 154 B CYS 155 n 141 CYS 155 B SER 156 n 142 SER 156 B ALA 157 n 143 ALA 157 B PHE 158 n 144 PHE 158 B VAL 159 n 145 VAL 159 B ALA 160 n 146 ALA 160 B GLN 161 n 147 GLN 161 B VAL 162 n 148 VAL 162 B TYR 163 n 149 TYR 163 B ALA 164 n 150 ALA 164 B GLU 165 n 151 GLU 165 B LEU 166 n 152 LEU 166 B GLY 167 n 153 GLY 167 B VAL 168 n 154 VAL 168 B ALA 169 n 155 ALA 169 B LEU 170 n 156 LEU 170 B PRO 171 n 157 PRO 171 B ARG 172 n 158 ARG 172 B THR 173 n 159 THR 173 B THR 174 n 160 THR 174 B LYS 175 n 161 LYS 175 B GLU 176 n 162 GLU 176 B GLN 177 n 163 GLN 177 B TYR 178 n 164 TYR 178 B GLN 179 n 165 GLN 179 B ALA 180 n 166 ALA 180 B PHE 181 n 167 PHE 181 B PRO 182 n 168 PRO 182 B PRO 183 n 169 PRO 183 B VAL 184 n 170 VAL 184 B GLU 185 n 171 GLU 185 B ALA 186 n 172 ALA 186 B PRO 187 n 173 PRO 187 B ARG 188 n 174 ARG 188 B PRO 189 n 175 PRO 189 B GLY 190 n 176 GLY 190 B ASP 191 n 177 ASP 191 B LEU 192 n 178 LEU 192 B VAL 193 n 179 VAL 193 B PHE 194 n 180 PHE 194 B PHE 195 n 181 PHE 195 B SER 196 n 182 SER 196 B PHE 197 n 183 PHE 197 B GLY 198 n 184 GLY 198 B GLY 199 n 185 GLY 199 B LYS 200 n 186 LYS 200 B GLU 201 n 187 GLU 201 B VAL 202 n 188 VAL 202 B ASP 203 n 189 ASP 203 B HIS 204 n 190 HIS 204 B VAL 205 n 191 VAL 205 B GLY 206 n 192 GLY 206 B ILE 207 n 193 ILE 207 B TYR 208 n 194 TYR 208 B LEU 209 n 195 LEU 209 B GLY 210 n 196 GLY 210 B ARG 211 n 197 ARG 211 B GLY 212 n 198 GLY 212 B VAL 213 n 199 VAL 213 B PHE 214 n 200 PHE 214 B ALA 215 n 201 ALA 215 B HIS 216 n 202 HIS 216 B ALA 217 n 203 ALA 217 B SER 218 n 204 SER 218 B SER 219 n 205 SER 219 B TYR 220 n 206 TYR 220 B GLY 221 n 207 GLY 221 B SER 222 n 208 SER 222 B ARG 223 n 209 ARG 223 B VAL 224 n 210 VAL 224 B VAL 225 n 211 VAL 225 B ILE 226 n 212 ILE 226 B GLU 227 n 213 GLU 227 B SER 228 n 214 SER 228 B LEU 229 n 215 LEU 229 B GLU 230 n 216 GLU 230 B ALA 231 n 217 ALA 231 B PRO 232 n 218 PRO 232 B PHE 233 n 219 PHE 233 B TYR 234 n 220 TYR 234 B ARG 235 n 221 ARG 235 B LYS 236 n 222 LYS 236 B VAL 237 n 223 VAL 237 B TYR 238 n 224 TYR 238 B ARG 239 n 225 ARG 239 B GLY 240 n 226 GLY 240 B ALA 241 n 227 ALA 241 B ARG 242 n 228 ARG 242 B ARG 243 n 229 ARG 243 B VAL 244 n 230 VAL 244 B MSE 245 n 231 MSE 245 B n 232 246 B n 233 247 B n 234 248 B n 235 249 B n 236 250 B n 237 251 B n 238 252 B n 239 253 B n 240 254 B n 241 255 B n 242 256 B n 243 257 B n 244 258 B 3.4154 3.4156 5.0244 9.1943 5.4354 10.1269 0.8270 0.0872 -1.2441 1.1720 -0.1427 -0.4224 1.4915 -0.3203 -0.6334 0.8095 -0.2029 -0.0869 0.7224 -0.1181 0.7158 refined -51.0697 -17.6172 -4.5884 X-RAY DIFFRACTION 0.7720 2.7042 0.7390 7.2370 0.0995 4.8408 -1.0991 1.3664 0.8295 -0.6138 0.6009 0.6116 -0.6939 0.3590 0.2186 1.1366 -0.2299 -0.2660 0.8596 0.0128 0.9546 refined -47.6647 -2.8125 -8.5911 X-RAY DIFFRACTION 8.0482 3.9166 -0.7654 10.7082 -1.1668 5.5867 -0.0046 0.2940 0.5765 -0.0072 -0.1090 -0.0167 -0.3517 0.2263 0.0383 0.6009 -0.0814 0.0516 0.4251 0.0953 0.4631 refined -35.5846 14.2311 3.2161 X-RAY DIFFRACTION 4.9333 -1.9155 -2.1395 4.6588 -0.1252 1.3345 -0.1898 0.3145 -0.7377 -0.2508 -0.1363 -2.3940 -0.0856 1.0530 0.2876 0.6270 -0.1705 0.1086 1.0828 0.1480 1.5946 refined -14.1845 18.0453 -1.8182 X-RAY DIFFRACTION 4.5854 -1.4484 -2.1059 4.8550 -3.6243 10.0344 -0.0396 0.5350 0.0040 -0.6242 0.2035 0.0322 0.9254 0.0486 -0.0571 1.4020 0.2488 -0.1921 1.7125 -0.1293 1.1330 refined 14.5080 21.8545 10.5412 X-RAY DIFFRACTION 8.8556 7.1712 1.2717 4.6022 1.3150 -0.3237 -1.5116 1.7405 -0.5566 -0.9224 1.6769 -0.5235 -0.8356 0.3890 -0.1236 1.3618 0.0563 -0.0831 1.2877 -0.1213 1.1991 refined -9.1836 9.4728 4.6206 X-RAY DIFFRACTION 7.9249 3.7646 5.1831 6.1523 1.7037 8.7367 0.6484 -0.1666 -1.0364 0.6568 -0.0824 -0.2487 1.8208 -0.1014 -0.4841 1.0215 -0.0175 -0.0477 0.3704 -0.0140 0.4562 refined -39.1509 -10.4327 9.2544 X-RAY DIFFRACTION 8.7872 -3.8872 -0.3411 6.5514 0.0120 3.1607 0.4896 -0.1547 -0.4799 0.8819 -0.2168 -0.5740 0.8790 0.2116 -0.1527 1.0829 0.0553 -0.2093 0.5153 0.0236 0.4821 refined -32.6277 -6.5517 18.3077 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'A' and (resid 17 through 59 ) X-RAY DIFFRACTION 2 chain 'A' and (resid 60 through 129 ) X-RAY DIFFRACTION 3 chain 'A' and (resid 130 through 246 ) X-RAY DIFFRACTION 4 chain 'B' and (resid 17 through 64 ) X-RAY DIFFRACTION 5 chain 'B' and (resid 65 through 104 ) X-RAY DIFFRACTION 6 chain 'B' and (resid 105 through 129 ) X-RAY DIFFRACTION 7 chain 'B' and (resid 130 through 228 ) X-RAY DIFFRACTION 8 chain 'B' and (resid 229 through 245 ) software_defined_assembly PISA 2 dimeric 4320 -29 19090 A MSE 42 modified residue A MSE 28 MET A MSE 245 modified residue A MSE 231 MET B MSE 42 modified residue B MSE 28 MET B MSE 90 modified residue B MSE 76 MET B MSE 245 modified residue B MSE 231 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 19 A N TYR 5 A O LEU 58 A O LEU 44 A O GLU 227 A O GLU 213 A N PHE 214 A N PHE 200 A O VAL 213 A O VAL 199 A N LEU 209 A N LEU 195 A O HIS 204 A O HIS 190 A N PHE 195 A N PHE 181 A N LEU 192 A N LEU 178 A O ARG 242 A O ARG 228 B N TYR 19 B N TYR 5 B O LEU 58 B O LEU 44 B N HIS 67 B N HIS 53 B O LEU 106 B O LEU 92 B N VAL 184 B N VAL 170 B O ALA 241 B O ALA 227 B O GLY 240 B O GLY 226 B N PHE 194 B N PHE 180 B N VAL 193 B N VAL 179 B O GLY 206 B O GLY 192 B N ILE 207 B N ILE 193 B O ALA 215 B O ALA 201 B N PHE 214 B N PHE 200 B O GLU 227 B O GLU 213 1 A ALA 15 A ALA 1 1 Y 1 A GLN 16 A GLN 2 1 Y 1 A SER 62 A SER 48 1 Y 1 A ARG 63 A ARG 49 1 Y 1 A GLU 64 A GLU 50 1 Y 1 A ARG 65 A ARG 51 1 Y 1 A THR 66 A THR 52 1 Y 1 A HIS 67 A HIS 53 1 Y 1 A VAL 68 A VAL 54 1 Y 1 A VAL 69 A VAL 55 1 Y 1 A ALA 70 A ALA 56 1 Y 1 A PRO 71 A PRO 57 1 Y 1 A GLY 72 A GLY 58 1 Y 1 A ASP 73 A ASP 59 1 Y 1 A THR 74 A THR 60 1 Y 1 A LEU 75 A LEU 61 1 Y 1 A PHE 76 A PHE 62 1 Y 1 A SER 77 A SER 63 1 Y 1 A LEU 78 A LEU 64 1 Y 1 A ALA 79 A ALA 65 1 Y 1 A ARG 80 A ARG 66 1 Y 1 A ARG 81 A ARG 67 1 Y 1 A TYR 82 A TYR 68 1 Y 1 A GLY 83 A GLY 69 1 Y 1 A THR 84 A THR 70 1 Y 1 A THR 85 A THR 71 1 Y 1 A VAL 86 A VAL 72 1 Y 1 A GLU 87 A GLU 73 1 Y 1 A ALA 88 A ALA 74 1 Y 1 A LEU 89 A LEU 75 1 Y 1 A MSE 90 A MSE 76 1 Y 1 A ARG 91 A ARG 77 1 Y 1 A LEU 92 A LEU 78 1 Y 1 A ASN 93 A ASN 79 1 Y 1 A GLY 94 A GLY 80 1 Y 1 A LEU 95 A LEU 81 1 Y 1 A SER 96 A SER 82 1 Y 1 A SER 97 A SER 83 1 Y 1 A PRO 98 A PRO 84 1 Y 1 A GLU 99 A GLU 85 1 Y 1 A ILE 100 A ILE 86 1 Y 1 A LYS 101 A LYS 87 1 Y 1 A VAL 102 A VAL 88 1 Y 1 A GLY 103 A GLY 89 1 Y 1 A GLN 104 A GLN 90 1 Y 1 A VAL 105 A VAL 91 1 Y 1 A LEU 106 A LEU 92 1 Y 1 A ARG 107 A ARG 93 1 Y 1 A LEU 108 A LEU 94 1 Y 1 A PRO 109 A PRO 95 1 Y 1 A GLU 110 A GLU 96 1 Y 1 A GLU 111 A GLU 97 1 Y 1 A GLY 112 A GLY 98 1 Y 1 A GLU 113 A GLU 99 1 Y 1 A ALA 114 A ALA 100 1 Y 1 A PRO 115 A PRO 101 1 Y 1 A PRO 116 A PRO 102 1 Y 1 A SER 247 A SER 233 1 Y 1 A PRO 248 A PRO 234 1 Y 1 A GLU 249 A GLU 235 1 Y 1 A PRO 250 A PRO 236 1 Y 1 A PRO 251 A PRO 237 1 Y 1 A PRO 252 A PRO 238 1 Y 1 A ALA 253 A ALA 239 1 Y 1 A PRO 254 A PRO 240 1 Y 1 A SER 255 A SER 241 1 Y 1 A ALA 256 A ALA 242 1 Y 1 A THR 257 A THR 243 1 Y 1 A PRO 258 A PRO 244 1 Y 1 B ALA 15 B ALA 1 1 Y 1 B GLN 16 B GLN 2 1 Y 1 B GLU 111 B GLU 97 1 Y 1 B GLY 112 B GLY 98 1 Y 1 B GLU 113 B GLU 99 1 Y 1 B ALA 114 B ALA 100 1 Y 1 B PRO 115 B PRO 101 1 Y 1 B PRO 116 B PRO 102 1 Y 1 B PRO 117 B PRO 103 1 Y 1 B PRO 118 B PRO 104 1 Y 1 B PRO 119 B PRO 105 1 Y 1 B PRO 120 B PRO 106 1 Y 1 B GLU 121 B GLU 107 1 Y 1 B ALA 246 B ALA 232 1 Y 1 B SER 247 B SER 233 1 Y 1 B PRO 248 B PRO 234 1 Y 1 B GLU 249 B GLU 235 1 Y 1 B PRO 250 B PRO 236 1 Y 1 B PRO 251 B PRO 237 1 Y 1 B PRO 252 B PRO 238 1 Y 1 B ALA 253 B ALA 239 1 Y 1 B PRO 254 B PRO 240 1 Y 1 B SER 255 B SER 241 1 Y 1 B ALA 256 B ALA 242 1 Y 1 B THR 257 B THR 243 1 Y 1 B PRO 258 B PRO 244 1 Y 1 A A OH O TYR GLY 163 190 2.04 1 B B OH OD2 TYR ASP 19 25 2.15 1 B B OH O TYR GLY 163 190 2.17 1 B B NH1 OE1 ARG GLU 137 165 2.19 1 A THR 36 -128.93 -163.42 1 A PRO 127 -48.70 -14.23 1 B GLU 123 -127.56 -159.31 1 B ALA 124 -158.22 -68.09 1 B ASP 203 -141.53 22.31 1 B SER 222 59.97 11.65 0.2383 0.1941 0.1986 2.650 29.584 3316 32875 10.09 99.87 0.32 1 FREE R-VALUE 1.39 SAD 27.73 0.90 1.11 ML FLAT BULK SOLVENT MODEL 2.650 29.584 16 3072 0 0 3056 0.003 3134 0.706 4262 13.630 1169 0.044 470 0.004 555 0.3269 0.3050 2.6880 136 1252 100.00 2.7281 126 1191 100.00 0.3351 0.2634 2.7707 146 1230 100.00 0.3443 0.2592 2.8160 140 1252 100.00 0.3563 0.2727 2.8646 140 1289 100.00 0.3305 0.2792 2.9166 122 1185 100.00 0.3782 0.2543 2.9727 148 1234 100.00 0.2954 0.2476 3.0333 144 1209 100.00 0.3149 0.2482 3.0992 133 1271 100.00 0.3557 0.2338 3.1712 140 1196 100.00 0.2990 0.2303 3.2504 144 1281 100.00 0.2942 0.2360 3.3382 128 1185 100.00 0.2511 0.2081 3.4362 142 1254 100.00 0.3039 0.2195 3.5470 134 1221 100.00 0.2714 0.1996 3.6735 138 1197 100.00 0.2672 0.1980 3.8203 152 1274 100.00 0.2115 0.1883 3.9938 140 1230 100.00 0.2394 0.1716 4.2038 136 1248 100.00 0.1849 0.1649 4.4663 140 1225 100.00 0.1691 0.1392 4.8098 138 1229 100.00 0.1897 0.1451 5.2914 141 1217 100.00 0.1834 0.1828 6.0514 128 1234 100.00 0.2230 0.1824 7.6026 132 1247 100.00 0.1932 0.1747 29.5858 148 1208 99.00 2.6 30 4XCM 34882 34817 0.06 1 15.3 5.9 99.8 0.75 2.6 2.65 2.1 1 5.9 99.8 refinement PHENIX (phenix.refine: 1.8_1069) data reduction XDS data scaling XSCALE phasing PHENIX P60 Crystal structure of the putative NlpC/P60 D,L endopeptidase from T. thermophilus 1 N N 1 N N 2 N N 2 N N A THR 26 A THR 12 HELX_P A TYR 34 A TYR 20 1 AA1 9 A THR 37 A THR 23 HELX_P A GLY 46 A GLY 32 1 AA2 10 A SER 129 A SER 115 HELX_P A LEU 139 A LEU 125 1 AA3 11 A PRO 150 A PRO 136 HELX_P A GLU 165 A GLU 151 1 AA4 16 A THR 173 A THR 159 HELX_P A PHE 181 A PHE 167 1 AA5 9 A ALA 231 A ALA 217 HELX_P A VAL 237 A VAL 223 1 AA6 7 B THR 26 B THR 12 HELX_P B TYR 34 B TYR 20 1 AA7 9 B THR 37 B THR 23 HELX_P B GLY 46 B GLY 32 1 AA8 10 B THR 74 B THR 60 HELX_P B GLY 83 B GLY 69 1 AA9 10 B GLU 87 B GLU 73 HELX_P B LEU 92 B LEU 78 1 AB1 6 B SER 129 B SER 115 HELX_P B ARG 137 B ARG 123 1 AB2 9 B PRO 150 B PRO 136 HELX_P B GLU 165 B GLU 151 1 AB3 16 B THR 173 B THR 159 HELX_P B GLN 179 B GLN 165 1 AB4 7 B ALA 231 B ALA 217 HELX_P B VAL 237 B VAL 223 1 AB5 7 covale 1.330 both A LEU 41 A C LEU 27 1_555 A MSE 42 A N MSE 28 1_555 covale 1.330 both A MSE 42 A C MSE 28 1_555 A ARG 43 A N ARG 29 1_555 covale 1.331 both A VAL 244 A C VAL 230 1_555 A MSE 245 A N MSE 231 1_555 covale 1.331 both A MSE 245 A C MSE 231 1_555 A ALA 246 A N ALA 232 1_555 covale 1.330 both B LEU 41 B C LEU 27 1_555 B MSE 42 B N MSE 28 1_555 covale 1.330 both B MSE 42 B C MSE 28 1_555 B ARG 43 B N ARG 29 1_555 covale 1.328 both B LEU 89 B C LEU 75 1_555 B MSE 90 B N MSE 76 1_555 covale 1.331 both B MSE 90 B C MSE 76 1_555 B ARG 91 B N ARG 77 1_555 covale 1.329 both B VAL 244 B C VAL 230 1_555 B MSE 245 B N MSE 231 1_555 HYDROLASE NlpC/P60, D, L-endopeptidase, LysM domain, hydrolase Q5SLM7_THET8 UNP 1 15 Q5SLM7 AQATYTVAPGDTLYSIARRYGTTVEELMRLNGLESFLLQPGQVLKLPSRERTHVVAPGDTLFSLARRYGTTVEALMRLNG LSSPEIKVGQVLRLPEEGEAPPPPPPEPEALDPESPLLRAVLRYLGVPYKYGANSPLALDCSAFVAQVYAELGVALPRTT KEQYQAFPPVEAPRPGDLVFFSFGGKEVDHVGIYLGRGVFAHASSYGSRVVIESLEAPFYRKVYRGARRVMASPEPPPAP SATP 15 258 4XCM 15 258 Q5SLM7 A 1 1 244 15 258 4XCM 15 258 Q5SLM7 B 1 1 244 2 5 2 2 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 18 A THR 4 A THR 20 A THR 6 A VAL 57 A VAL 43 A LYS 59 A LYS 45 A VAL 224 A VAL 210 A SER 228 A SER 214 A VAL 213 A VAL 199 A ALA 217 A ALA 203 A HIS 204 A HIS 190 A GLY 210 A GLY 196 A LEU 192 A LEU 178 A PHE 195 A PHE 181 A TYR 238 A TYR 224 A ARG 242 A ARG 228 B THR 18 B THR 4 B THR 20 B THR 6 B VAL 57 B VAL 43 B LYS 59 B LYS 45 B ARG 65 B ARG 51 B VAL 68 B VAL 54 B VAL 105 B VAL 91 B LEU 108 B LEU 94 B PRO 183 B PRO 169 B VAL 184 B VAL 170 B TYR 238 B TYR 224 B ARG 242 B ARG 228 B LEU 192 B LEU 178 B PHE 195 B PHE 181 B HIS 204 B HIS 190 B GLY 210 B GLY 196 B VAL 213 B VAL 199 B ALA 217 B ALA 203 B VAL 224 B VAL 210 B SER 228 B SER 214 169 P 61