0.019433
0.000000
0.000000
0.000000
0.012995
0.000000
0.000000
0.000000
0.009284
0.00000
0.00000
0.00000
Fischer, M.
Fraser, J.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
51.460
76.950
107.710
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C7 H8 N2
120.152
BENZAMIDINE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
Y
74
N
C
Y
75
N
C
Y
76
N
C
Y
77
N
C
Y
78
N
C
Y
79
N
C
N
80
N
C
N
81
N
N
N
82
N
N
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
N
N
92
R
C
N
93
N
C
N
94
N
O
N
95
N
C
N
96
N
S
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
N
N
106
S
C
N
107
N
C
N
108
N
O
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
N
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
N
N
126
S
C
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
Y
158
N
C
Y
159
N
C
Y
160
N
C
Y
161
N
C
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
O
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
C
Y
175
N
C
Y
176
N
C
Y
177
N
C
Y
178
N
C
N
179
N
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
O
Y
192
N
N
N
193
N
N
Y
194
N
N
N
195
N
N
N
196
N
FE
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
Y
234
N
C
Y
235
N
N
Y
236
N
C
Y
237
N
C
Y
238
N
N
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
S
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
N
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
S
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
N
370
N
C
N
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
N
387
N
O
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
R
C
N
401
N
O
N
402
N
C
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
N
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
N
451
N
O
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
N
469
N
C
N
470
N
C
N
471
N
O
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
Y
70
N
doub
Y
71
N
sing
N
72
N
sing
Y
73
N
sing
N
74
N
sing
Y
75
N
doub
N
76
N
sing
Y
77
N
sing
N
78
N
sing
Y
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
E
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
Y
158
N
doub
Y
159
N
sing
Y
160
N
sing
N
161
N
sing
Y
162
N
doub
N
163
N
sing
Y
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
sing
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
Y
239
N
sing
Y
240
N
doub
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
Y
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
Y
416
N
doub
Y
417
N
sing
Y
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
Y
444
N
doub
Y
445
N
sing
Y
446
N
sing
N
447
N
sing
Y
448
N
doub
N
449
N
sing
Y
450
N
doub
N
451
N
sing
Y
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
GE
Chembiochem
1439-7633
16
1560
1564
10.1002/cbic.201500196
26032594
One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites.
2015
UK
Nat Chem
1755-4349
6
575
583
10.1038/nchem.1954
24950326
Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery.
2014
10.2210/pdb4xv8/pdb
pdb_00004xv8
273
1
CCD
2011-09-27
ADSC QUANTUM 315r
KOHZU DUAL DOUBLE CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
0.95372
1.0
257569
0.053
1.01
1.570
60219
99.40
8.3.1
ALS
0.95372
SYNCHROTRON
ALS BEAMLINE 8.3.1
33290.062
Cytochrome c peroxidase, mitochondrial
1.11.1.5
unp residues 71-361
P190G, W191G
1
man
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
man
non-polymer
120.152
BENZAMIDINE
1
syn
non-polymer
18.015
water
295
nat
water
CCP
no
no
MKTLVHVASVEKGRSYEDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDP
SNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQR
LNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP
KYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL
MKTLVHVASVEKGRSYEDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDP
SNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQR
LNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP
KYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Baker's yeast
ATCC 204508 / S288c
sample
1
292
CCP1, CCP, CPO, YKR066C
559292
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
469008
Escherichia coli
BL21(DE3)
plasmid
Biological sequence
1
3.18
61.33
VAPOR DIFFUSION, HANGING DROP
6
Compound soaked into crystal grown in equal volume of 500mM MES buffer and 25% MPD
283
entity_src_gen
pdbx_audit_support
pdbx_struct_oper_list
pdbx_validate_close_contact
pdbx_audit_support
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
diffrn_radiation_wavelength
repository
Initial release
Database references
Database references
Advisory
Author supporting evidence
Derived calculations
Source and taxonomy
Author supporting evidence
Author supporting evidence
Data collection
Database references
1
0
2015-02-18
1
1
2015-06-24
1
2
2015-07-29
1
3
2017-09-20
1
4
2019-11-27
1
5
2019-12-11
1
6
2024-02-28
_entity_src_gen.pdbx_alt_source_flag
_pdbx_audit_support.funding_organization
_pdbx_struct_oper_list.symmetry_operation
_pdbx_audit_support.funding_organization
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM59957
United States
National Institutes of Health/Office of the Director
OD009180
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
110580
United States
National Science Foundation (NSF, United States)
STC-1231306
collected at RT on the same crystal as 4NVC
N
RCSB
Y
RCSB
2015-01-26
REL
REL
0.031
1302
0.029
1634
0.031
1920
0.035
2169
0.038
2390
0.042
2587
0.048
2790
0.054
2923
0.061
3141
0.071
3266
0.087
3414
0.106
3556
0.139
3705
0.174
3802
0.225
3931
0.285
4086
0.367
4160
0.434
4303
0.555
4400
HEM
PROTOPORPHYRIN IX CONTAINING FE
BEN
BENZAMIDINE
HOH
water
HEM
301
2
HEM
HEM
301
A
BEN
302
3
BEN
BEN
302
A
HOH
401
4
HOH
HOH
401
A
HOH
402
4
HOH
HOH
402
A
HOH
403
4
HOH
HOH
403
A
HOH
404
4
HOH
HOH
404
A
HOH
405
4
HOH
HOH
405
A
HOH
406
4
HOH
HOH
406
A
HOH
407
4
HOH
HOH
407
A
HOH
408
4
HOH
HOH
408
A
HOH
409
4
HOH
HOH
409
A
HOH
410
4
HOH
HOH
410
A
HOH
411
4
HOH
HOH
411
A
HOH
412
4
HOH
HOH
412
A
HOH
413
4
HOH
HOH
413
A
HOH
414
4
HOH
HOH
414
A
HOH
415
4
HOH
HOH
415
A
HOH
416
4
HOH
HOH
416
A
HOH
417
4
HOH
HOH
417
A
HOH
418
4
HOH
HOH
418
A
HOH
419
4
HOH
HOH
419
A
HOH
420
4
HOH
HOH
420
A
HOH
421
4
HOH
HOH
421
A
HOH
422
4
HOH
HOH
422
A
HOH
423
4
HOH
HOH
423
A
HOH
424
4
HOH
HOH
424
A
HOH
425
4
HOH
HOH
425
A
HOH
426
4
HOH
HOH
426
A
HOH
427
4
HOH
HOH
427
A
HOH
428
4
HOH
HOH
428
A
HOH
429
4
HOH
HOH
429
A
HOH
430
4
HOH
HOH
430
A
HOH
431
4
HOH
HOH
431
A
HOH
432
4
HOH
HOH
432
A
HOH
433
4
HOH
HOH
433
A
HOH
434
4
HOH
HOH
434
A
HOH
435
4
HOH
HOH
435
A
HOH
436
4
HOH
HOH
436
A
HOH
437
4
HOH
HOH
437
A
HOH
438
4
HOH
HOH
438
A
HOH
439
4
HOH
HOH
439
A
HOH
440
4
HOH
HOH
440
A
HOH
441
4
HOH
HOH
441
A
HOH
442
4
HOH
HOH
442
A
HOH
443
4
HOH
HOH
443
A
HOH
444
4
HOH
HOH
444
A
HOH
445
4
HOH
HOH
445
A
HOH
446
4
HOH
HOH
446
A
HOH
447
4
HOH
HOH
447
A
HOH
448
4
HOH
HOH
448
A
HOH
449
4
HOH
HOH
449
A
HOH
450
4
HOH
HOH
450
A
HOH
451
4
HOH
HOH
451
A
HOH
452
4
HOH
HOH
452
A
HOH
453
4
HOH
HOH
453
A
HOH
454
4
HOH
HOH
454
A
HOH
455
4
HOH
HOH
455
A
HOH
456
4
HOH
HOH
456
A
HOH
457
4
HOH
HOH
457
A
HOH
458
4
HOH
HOH
458
A
HOH
459
4
HOH
HOH
459
A
HOH
460
4
HOH
HOH
460
A
HOH
461
4
HOH
HOH
461
A
HOH
462
4
HOH
HOH
462
A
HOH
463
4
HOH
HOH
463
A
HOH
464
4
HOH
HOH
464
A
HOH
465
4
HOH
HOH
465
A
HOH
466
4
HOH
HOH
466
A
HOH
467
4
HOH
HOH
467
A
HOH
468
4
HOH
HOH
468
A
HOH
469
4
HOH
HOH
469
A
HOH
470
4
HOH
HOH
470
A
HOH
471
4
HOH
HOH
471
A
HOH
472
4
HOH
HOH
472
A
HOH
473
4
HOH
HOH
473
A
HOH
474
4
HOH
HOH
474
A
HOH
475
4
HOH
HOH
475
A
HOH
476
4
HOH
HOH
476
A
HOH
477
4
HOH
HOH
477
A
HOH
478
4
HOH
HOH
478
A
HOH
479
4
HOH
HOH
479
A
HOH
480
4
HOH
HOH
480
A
HOH
481
4
HOH
HOH
481
A
HOH
482
4
HOH
HOH
482
A
HOH
483
4
HOH
HOH
483
A
HOH
484
4
HOH
HOH
484
A
HOH
485
4
HOH
HOH
485
A
HOH
486
4
HOH
HOH
486
A
HOH
487
4
HOH
HOH
487
A
HOH
488
4
HOH
HOH
488
A
HOH
489
4
HOH
HOH
489
A
HOH
490
4
HOH
HOH
490
A
HOH
491
4
HOH
HOH
491
A
HOH
492
4
HOH
HOH
492
A
HOH
493
4
HOH
HOH
493
A
HOH
494
4
HOH
HOH
494
A
HOH
495
4
HOH
HOH
495
A
HOH
496
4
HOH
HOH
496
A
HOH
497
4
HOH
HOH
497
A
HOH
498
4
HOH
HOH
498
A
HOH
499
4
HOH
HOH
499
A
HOH
500
4
HOH
HOH
500
A
HOH
501
4
HOH
HOH
501
A
HOH
502
4
HOH
HOH
502
A
HOH
503
4
HOH
HOH
503
A
HOH
504
4
HOH
HOH
504
A
HOH
505
4
HOH
HOH
505
A
HOH
506
4
HOH
HOH
506
A
HOH
507
4
HOH
HOH
507
A
HOH
508
4
HOH
HOH
508
A
HOH
509
4
HOH
HOH
509
A
HOH
510
4
HOH
HOH
510
A
HOH
511
4
HOH
HOH
511
A
HOH
512
4
HOH
HOH
512
A
HOH
513
4
HOH
HOH
513
A
HOH
514
4
HOH
HOH
514
A
HOH
515
4
HOH
HOH
515
A
HOH
516
4
HOH
HOH
516
A
HOH
517
4
HOH
HOH
517
A
HOH
518
4
HOH
HOH
518
A
HOH
519
4
HOH
HOH
519
A
HOH
520
4
HOH
HOH
520
A
HOH
521
4
HOH
HOH
521
A
HOH
522
4
HOH
HOH
522
A
HOH
523
4
HOH
HOH
523
A
HOH
524
4
HOH
HOH
524
A
HOH
525
4
HOH
HOH
525
A
HOH
526
4
HOH
HOH
526
A
HOH
527
4
HOH
HOH
527
A
HOH
528
4
HOH
HOH
528
A
HOH
529
4
HOH
HOH
529
A
HOH
530
4
HOH
HOH
530
A
HOH
531
4
HOH
HOH
531
A
HOH
532
4
HOH
HOH
532
A
HOH
533
4
HOH
HOH
533
A
HOH
534
4
HOH
HOH
534
A
HOH
535
4
HOH
HOH
535
A
HOH
536
4
HOH
HOH
536
A
HOH
537
4
HOH
HOH
537
A
HOH
538
4
HOH
HOH
538
A
HOH
539
4
HOH
HOH
539
A
HOH
540
4
HOH
HOH
540
A
HOH
541
4
HOH
HOH
541
A
HOH
542
4
HOH
HOH
542
A
HOH
543
4
HOH
HOH
543
A
HOH
544
4
HOH
HOH
544
A
HOH
545
4
HOH
HOH
545
A
HOH
546
4
HOH
HOH
546
A
HOH
547
4
HOH
HOH
547
A
HOH
548
4
HOH
HOH
548
A
HOH
549
4
HOH
HOH
549
A
HOH
550
4
HOH
HOH
550
A
HOH
551
4
HOH
HOH
551
A
HOH
552
4
HOH
HOH
552
A
HOH
553
4
HOH
HOH
553
A
HOH
554
4
HOH
HOH
554
A
HOH
555
4
HOH
HOH
555
A
HOH
556
4
HOH
HOH
556
A
HOH
557
4
HOH
HOH
557
A
HOH
558
4
HOH
HOH
558
A
HOH
559
4
HOH
HOH
559
A
HOH
560
4
HOH
HOH
560
A
HOH
561
4
HOH
HOH
561
A
HOH
562
4
HOH
HOH
562
A
HOH
563
4
HOH
HOH
563
A
HOH
564
4
HOH
HOH
564
A
HOH
565
4
HOH
HOH
565
A
HOH
566
4
HOH
HOH
566
A
HOH
567
4
HOH
HOH
567
A
HOH
568
4
HOH
HOH
568
A
HOH
569
4
HOH
HOH
569
A
HOH
570
4
HOH
HOH
570
A
HOH
571
4
HOH
HOH
571
A
HOH
572
4
HOH
HOH
572
A
HOH
573
4
HOH
HOH
573
A
HOH
574
4
HOH
HOH
574
A
HOH
575
4
HOH
HOH
575
A
HOH
576
4
HOH
HOH
576
A
HOH
577
4
HOH
HOH
577
A
HOH
578
4
HOH
HOH
578
A
HOH
579
4
HOH
HOH
579
A
HOH
580
4
HOH
HOH
580
A
HOH
581
4
HOH
HOH
581
A
HOH
582
4
HOH
HOH
582
A
HOH
583
4
HOH
HOH
583
A
HOH
584
4
HOH
HOH
584
A
HOH
585
4
HOH
HOH
585
A
HOH
586
4
HOH
HOH
586
A
HOH
587
4
HOH
HOH
587
A
HOH
588
4
HOH
HOH
588
A
HOH
589
4
HOH
HOH
589
A
HOH
590
4
HOH
HOH
590
A
HOH
591
4
HOH
HOH
591
A
HOH
592
4
HOH
HOH
592
A
HOH
593
4
HOH
HOH
593
A
HOH
594
4
HOH
HOH
594
A
HOH
595
4
HOH
HOH
595
A
HOH
596
4
HOH
HOH
596
A
HOH
597
4
HOH
HOH
597
A
HOH
598
4
HOH
HOH
598
A
HOH
599
4
HOH
HOH
599
A
HOH
600
4
HOH
HOH
600
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
609
4
HOH
HOH
609
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
621
4
HOH
HOH
621
A
HOH
622
4
HOH
HOH
622
A
HOH
623
4
HOH
HOH
623
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
631
4
HOH
HOH
631
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
640
4
HOH
HOH
640
A
HOH
641
4
HOH
HOH
641
A
HOH
642
4
HOH
HOH
642
A
HOH
643
4
HOH
HOH
643
A
HOH
644
4
HOH
HOH
644
A
HOH
645
4
HOH
HOH
645
A
HOH
646
4
HOH
HOH
646
A
HOH
647
4
HOH
HOH
647
A
HOH
648
4
HOH
HOH
648
A
HOH
649
4
HOH
HOH
649
A
HOH
650
4
HOH
HOH
650
A
HOH
651
4
HOH
HOH
651
A
HOH
652
4
HOH
HOH
652
A
HOH
653
4
HOH
HOH
653
A
HOH
654
4
HOH
HOH
654
A
HOH
655
4
HOH
HOH
655
A
HOH
656
4
HOH
HOH
656
A
HOH
657
4
HOH
HOH
657
A
HOH
658
4
HOH
HOH
658
A
HOH
659
4
HOH
HOH
659
A
HOH
660
4
HOH
HOH
660
A
HOH
661
4
HOH
HOH
661
A
HOH
662
4
HOH
HOH
662
A
HOH
663
4
HOH
HOH
663
A
HOH
664
4
HOH
HOH
664
A
HOH
665
4
HOH
HOH
665
A
HOH
666
4
HOH
HOH
666
A
HOH
667
4
HOH
HOH
667
A
HOH
668
4
HOH
HOH
668
A
HOH
669
4
HOH
HOH
669
A
HOH
670
4
HOH
HOH
670
A
HOH
671
4
HOH
HOH
671
A
HOH
672
4
HOH
HOH
672
A
HOH
673
4
HOH
HOH
673
A
HOH
674
4
HOH
HOH
674
A
HOH
675
4
HOH
HOH
675
A
HOH
676
4
HOH
HOH
676
A
HOH
677
4
HOH
HOH
677
A
HOH
678
4
HOH
HOH
678
A
HOH
679
4
HOH
HOH
679
A
HOH
680
4
HOH
HOH
680
A
HOH
681
4
HOH
HOH
681
A
HOH
682
4
HOH
HOH
682
A
HOH
683
4
HOH
HOH
683
A
HOH
684
4
HOH
HOH
684
A
HOH
685
4
HOH
HOH
685
A
HOH
686
4
HOH
HOH
686
A
HOH
687
4
HOH
HOH
687
A
HOH
688
4
HOH
HOH
688
A
HOH
689
4
HOH
HOH
689
A
HOH
690
4
HOH
HOH
690
A
HOH
691
4
HOH
HOH
691
A
HOH
692
4
HOH
HOH
692
A
HOH
693
4
HOH
HOH
693
A
HOH
694
4
HOH
HOH
694
A
HOH
695
4
HOH
HOH
695
A
n
1
1
A
n
2
2
A
n
3
3
A
LEU
4
n
4
LEU
4
A
VAL
5
n
5
VAL
5
A
HIS
6
n
6
HIS
6
A
VAL
7
n
7
VAL
7
A
ALA
8
n
8
ALA
8
A
SER
9
n
9
SER
9
A
VAL
10
n
10
VAL
10
A
GLU
11
n
11
GLU
11
A
LYS
12
n
12
LYS
12
A
GLY
13
n
13
GLY
13
A
ARG
14
n
14
ARG
14
A
SER
15
n
15
SER
15
A
TYR
16
n
16
TYR
16
A
GLU
17
n
17
GLU
17
A
ASP
18
n
18
ASP
18
A
PHE
19
n
19
PHE
19
A
GLN
20
n
20
GLN
20
A
LYS
21
n
21
LYS
21
A
VAL
22
n
22
VAL
22
A
TYR
23
n
23
TYR
23
A
ASN
24
n
24
ASN
24
A
ALA
25
n
25
ALA
25
A
ILE
26
n
26
ILE
26
A
ALA
27
n
27
ALA
27
A
LEU
28
n
28
LEU
28
A
LYS
29
n
29
LYS
29
A
LEU
30
n
30
LEU
30
A
ARG
31
n
31
ARG
31
A
GLU
32
n
32
GLU
32
A
ASP
33
n
33
ASP
33
A
ASP
34
n
34
ASP
34
A
GLU
35
n
35
GLU
35
A
TYR
36
n
36
TYR
36
A
ASP
37
n
37
ASP
37
A
ASN
38
n
38
ASN
38
A
TYR
39
n
39
TYR
39
A
ILE
40
n
40
ILE
40
A
GLY
41
n
41
GLY
41
A
TYR
42
n
42
TYR
42
A
GLY
43
n
43
GLY
43
A
PRO
44
n
44
PRO
44
A
VAL
45
n
45
VAL
45
A
LEU
46
n
46
LEU
46
A
VAL
47
n
47
VAL
47
A
ARG
48
n
48
ARG
48
A
LEU
49
n
49
LEU
49
A
ALA
50
n
50
ALA
50
A
TRP
51
n
51
TRP
51
A
HIS
52
n
52
HIS
52
A
ILE
53
n
53
ILE
53
A
SER
54
n
54
SER
54
A
GLY
55
n
55
GLY
55
A
THR
56
n
56
THR
56
A
TRP
57
n
57
TRP
57
A
ASP
58
n
58
ASP
58
A
LYS
59
n
59
LYS
59
A
HIS
60
n
60
HIS
60
A
ASP
61
n
61
ASP
61
A
ASN
62
n
62
ASN
62
A
THR
63
n
63
THR
63
A
GLY
64
n
64
GLY
64
A
GLY
65
n
65
GLY
65
A
SER
66
n
66
SER
66
A
TYR
67
n
67
TYR
67
A
GLY
68
n
68
GLY
68
A
GLY
69
n
69
GLY
69
A
THR
70
n
70
THR
70
A
TYR
71
n
71
TYR
71
A
ARG
72
n
72
ARG
72
A
PHE
73
n
73
PHE
73
A
LYS
74
n
74
LYS
74
A
LYS
75
n
75
LYS
75
A
GLU
76
n
76
GLU
76
A
PHE
77
n
77
PHE
77
A
ASN
78
n
78
ASN
78
A
ASP
79
n
79
ASP
79
A
PRO
80
n
80
PRO
80
A
SER
81
n
81
SER
81
A
ASN
82
n
82
ASN
82
A
ALA
83
n
83
ALA
83
A
GLY
84
n
84
GLY
84
A
LEU
85
n
85
LEU
85
A
GLN
86
n
86
GLN
86
A
ASN
87
n
87
ASN
87
A
GLY
88
n
88
GLY
88
A
PHE
89
n
89
PHE
89
A
LYS
90
n
90
LYS
90
A
PHE
91
n
91
PHE
91
A
LEU
92
n
92
LEU
92
A
GLU
93
n
93
GLU
93
A
PRO
94
n
94
PRO
94
A
ILE
95
n
95
ILE
95
A
HIS
96
n
96
HIS
96
A
LYS
97
n
97
LYS
97
A
GLU
98
n
98
GLU
98
A
PHE
99
n
99
PHE
99
A
PRO
100
n
100
PRO
100
A
TRP
101
n
101
TRP
101
A
ILE
102
n
102
ILE
102
A
SER
103
n
103
SER
103
A
SER
104
n
104
SER
104
A
GLY
105
n
105
GLY
105
A
ASP
106
n
106
ASP
106
A
LEU
107
n
107
LEU
107
A
PHE
108
n
108
PHE
108
A
SER
109
n
109
SER
109
A
LEU
110
n
110
LEU
110
A
GLY
111
n
111
GLY
111
A
GLY
112
n
112
GLY
112
A
VAL
113
n
113
VAL
113
A
THR
114
n
114
THR
114
A
ALA
115
n
115
ALA
115
A
VAL
116
n
116
VAL
116
A
GLN
117
n
117
GLN
117
A
GLU
118
n
118
GLU
118
A
MET
119
n
119
MET
119
A
GLN
120
n
120
GLN
120
A
GLY
121
n
121
GLY
121
A
PRO
122
n
122
PRO
122
A
LYS
123
n
123
LYS
123
A
ILE
124
n
124
ILE
124
A
PRO
125
n
125
PRO
125
A
TRP
126
n
126
TRP
126
A
ARG
127
n
127
ARG
127
A
CYS
128
n
128
CYS
128
A
GLY
129
n
129
GLY
129
A
ARG
130
n
130
ARG
130
A
VAL
131
n
131
VAL
131
A
ASP
132
n
132
ASP
132
A
THR
133
n
133
THR
133
A
PRO
134
n
134
PRO
134
A
GLU
135
n
135
GLU
135
A
ASP
136
n
136
ASP
136
A
THR
137
n
137
THR
137
A
THR
138
n
138
THR
138
A
PRO
139
n
139
PRO
139
A
ASP
140
n
140
ASP
140
A
ASN
141
n
141
ASN
141
A
GLY
142
n
142
GLY
142
A
ARG
143
n
143
ARG
143
A
LEU
144
n
144
LEU
144
A
PRO
145
n
145
PRO
145
A
ASP
146
n
146
ASP
146
A
ALA
147
n
147
ALA
147
A
ASP
148
n
148
ASP
148
A
LYS
149
n
149
LYS
149
A
ASP
150
n
150
ASP
150
A
ALA
151
n
151
ALA
151
A
GLY
152
n
152
GLY
152
A
TYR
153
n
153
TYR
153
A
VAL
154
n
154
VAL
154
A
ARG
155
n
155
ARG
155
A
THR
156
n
156
THR
156
A
PHE
157
n
157
PHE
157
A
PHE
158
n
158
PHE
158
A
GLN
159
n
159
GLN
159
A
ARG
160
n
160
ARG
160
A
LEU
161
n
161
LEU
161
A
ASN
162
n
162
ASN
162
A
MET
163
n
163
MET
163
A
ASN
164
n
164
ASN
164
A
ASP
165
n
165
ASP
165
A
ARG
166
n
166
ARG
166
A
GLU
167
n
167
GLU
167
A
VAL
168
n
168
VAL
168
A
VAL
169
n
169
VAL
169
A
ALA
170
n
170
ALA
170
A
LEU
171
n
171
LEU
171
A
MET
172
n
172
MET
172
A
GLY
173
n
173
GLY
173
A
ALA
174
n
174
ALA
174
A
HIS
175
n
175
HIS
175
A
ALA
176
n
176
ALA
176
A
LEU
177
n
177
LEU
177
A
GLY
178
n
178
GLY
178
A
LYS
179
n
179
LYS
179
A
THR
180
n
180
THR
180
A
HIS
181
n
181
HIS
181
A
LEU
182
n
182
LEU
182
A
LYS
183
n
183
LYS
183
A
ASN
184
n
184
ASN
184
A
SER
185
n
185
SER
185
A
GLY
186
n
186
GLY
186
A
TYR
187
n
187
TYR
187
A
GLU
188
n
188
GLU
188
A
GLY
189
n
189
GLY
189
A
GLY
190
n
190
GLY
190
A
GLY
191
n
191
GLY
191
A
ALA
192
n
192
ALA
192
A
ASN
193
n
193
ASN
193
A
ASN
194
n
194
ASN
194
A
VAL
195
n
195
VAL
195
A
PHE
196
n
196
PHE
196
A
THR
197
n
197
THR
197
A
ASN
198
n
198
ASN
198
A
GLU
199
n
199
GLU
199
A
PHE
200
n
200
PHE
200
A
TYR
201
n
201
TYR
201
A
LEU
202
n
202
LEU
202
A
ASN
203
n
203
ASN
203
A
LEU
204
n
204
LEU
204
A
LEU
205
n
205
LEU
205
A
ASN
206
n
206
ASN
206
A
GLU
207
n
207
GLU
207
A
ASP
208
n
208
ASP
208
A
TRP
209
n
209
TRP
209
A
LYS
210
n
210
LYS
210
A
LEU
211
n
211
LEU
211
A
GLU
212
n
212
GLU
212
A
LYS
213
n
213
LYS
213
A
ASN
214
n
214
ASN
214
A
ASP
215
n
215
ASP
215
A
ALA
216
n
216
ALA
216
A
ASN
217
n
217
ASN
217
A
ASN
218
n
218
ASN
218
A
GLU
219
n
219
GLU
219
A
GLN
220
n
220
GLN
220
A
TRP
221
n
221
TRP
221
A
ASP
222
n
222
ASP
222
A
SER
223
n
223
SER
223
A
LYS
224
n
224
LYS
224
A
SER
225
n
225
SER
225
A
GLY
226
n
226
GLY
226
A
TYR
227
n
227
TYR
227
A
MET
228
n
228
MET
228
A
MET
229
n
229
MET
229
A
LEU
230
n
230
LEU
230
A
PRO
231
n
231
PRO
231
A
THR
232
n
232
THR
232
A
ASP
233
n
233
ASP
233
A
TYR
234
n
234
TYR
234
A
SER
235
n
235
SER
235
A
LEU
236
n
236
LEU
236
A
ILE
237
n
237
ILE
237
A
GLN
238
n
238
GLN
238
A
ASP
239
n
239
ASP
239
A
PRO
240
n
240
PRO
240
A
LYS
241
n
241
LYS
241
A
TYR
242
n
242
TYR
242
A
LEU
243
n
243
LEU
243
A
SER
244
n
244
SER
244
A
ILE
245
n
245
ILE
245
A
VAL
246
n
246
VAL
246
A
LYS
247
n
247
LYS
247
A
GLU
248
n
248
GLU
248
A
TYR
249
n
249
TYR
249
A
ALA
250
n
250
ALA
250
A
ASN
251
n
251
ASN
251
A
ASP
252
n
252
ASP
252
A
GLN
253
n
253
GLN
253
A
ASP
254
n
254
ASP
254
A
LYS
255
n
255
LYS
255
A
PHE
256
n
256
PHE
256
A
PHE
257
n
257
PHE
257
A
LYS
258
n
258
LYS
258
A
ASP
259
n
259
ASP
259
A
PHE
260
n
260
PHE
260
A
SER
261
n
261
SER
261
A
LYS
262
n
262
LYS
262
A
ALA
263
n
263
ALA
263
A
PHE
264
n
264
PHE
264
A
GLU
265
n
265
GLU
265
A
LYS
266
n
266
LYS
266
A
LEU
267
n
267
LEU
267
A
LEU
268
n
268
LEU
268
A
GLU
269
n
269
GLU
269
A
ASN
270
n
270
ASN
270
A
GLY
271
n
271
GLY
271
A
ILE
272
n
272
ILE
272
A
THR
273
n
273
THR
273
A
PHE
274
n
274
PHE
274
A
PRO
275
n
275
PRO
275
A
LYS
276
n
276
LYS
276
A
ASP
277
n
277
ASP
277
A
ALA
278
n
278
ALA
278
A
PRO
279
n
279
PRO
279
A
SER
280
n
280
SER
280
A
PRO
281
n
281
PRO
281
A
PHE
282
n
282
PHE
282
A
ILE
283
n
283
ILE
283
A
PHE
284
n
284
PHE
284
A
LYS
285
n
285
LYS
285
A
THR
286
n
286
THR
286
A
LEU
287
n
287
LEU
287
A
GLU
288
n
288
GLU
288
A
GLU
289
n
289
GLU
289
A
GLN
290
n
290
GLN
290
A
GLY
291
n
291
GLY
291
A
LEU
292
n
292
LEU
292
A
author_and_software_defined_assembly
PISA
1
monomeric
A
HIS
175
A
NE2
HIS
175
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
NA
HEM
1_555
94.7
A
HIS
175
A
NE2
HIS
175
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
NB
HEM
1_555
90.3
A
HEM
301
B
NA
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
NB
HEM
1_555
88.9
A
HIS
175
A
NE2
HIS
175
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
NC
HEM
1_555
87.6
A
HEM
301
B
NA
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
NC
HEM
1_555
177.6
A
HEM
301
B
NB
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
NC
HEM
1_555
90.7
A
HIS
175
A
NE2
HIS
175
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
ND
HEM
1_555
92.2
A
HEM
301
B
NA
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
ND
HEM
1_555
91.3
A
HEM
301
B
NB
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
ND
HEM
1_555
177.4
A
HEM
301
B
NC
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HEM
301
B
ND
HEM
1_555
89.1
A
HIS
175
A
NE2
HIS
175
1_555
A
HEM
301
B
FE
HEM
1_555
A
HOH
459
D
O
HOH
1_555
177.7
A
HEM
301
B
NA
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HOH
459
D
O
HOH
1_555
85.1
A
HEM
301
B
NB
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HOH
459
D
O
HOH
1_555
87.4
A
HEM
301
B
NC
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HOH
459
D
O
HOH
1_555
92.5
A
HEM
301
B
ND
HEM
1_555
A
HEM
301
B
FE
HEM
1_555
A
HOH
459
D
O
HOH
1_555
90.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
6
A
N
HIS
6
A
O
THR
273
A
O
THR
273
A
N
LYS
210
A
N
LYS
210
A
O
ASP
222
A
O
ASP
222
A
N
TRP
221
A
N
TRP
221
A
O
MET
229
A
O
MET
229
1
A
MET
1
A
MET
1
1
Y
1
A
LYS
2
A
LYS
2
1
Y
1
A
THR
3
A
THR
3
1
Y
1
A
ASP
252
-150.15
89.70
23.52
0.140
0.108
0.110
1.57
39.76
3040
60160
5.050
99.5
0.140
Random selection
1
FREE R-VALUE
1.350
MOLECULAR REPLACEMENT
11.490
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
1.57
39.76
295
2675
52
0
2328
0.017
2653
1.592
3631
15.167
987
0.108
351
0.010
490
0.1975
0.1696
1.5945
150
2540
100.00
0.2161
0.1638
1.6207
140
2555
100.00
0.1928
0.1493
1.6486
141
2552
100.00
0.1954
0.1548
1.6786
154
2589
100.00
0.1772
0.1459
1.7109
132
2602
100.00
0.1293
0.1306
1.7458
134
2540
100.00
0.1614
0.1246
1.7838
134
2582
100.00
0.1532
0.1123
1.8253
122
2585
100.00
0.1581
0.1002
1.8709
153
2564
100.00
0.1212
0.0969
1.9215
142
2606
100.00
0.1228
0.0938
1.9780
152
2564
100.00
0.1455
0.0936
2.0419
143
2563
100.00
0.1319
0.0981
2.1149
131
2584
100.00
0.1407
0.0932
2.1995
136
2604
100.00
0.1288
0.0970
2.2996
114
2623
100.00
0.1291
0.1020
2.4209
147
2580
100.00
0.1322
0.1119
2.5725
137
2636
99.00
0.1477
0.1139
2.7711
142
2584
99.00
0.1415
0.1112
3.0499
139
2620
99.00
0.1309
0.1078
3.4909
120
2658
99.00
0.1148
0.0919
4.3973
136
2639
98.00
0.1467
0.1112
39.7685
141
2750
97.00
17.76
1.570
39.760
4XV8
60219
-3.000
0.05300
1
14.9000
4.300
99.6
0.55500
1.57
1.61
2.400
1
4.20
99.8
refinement
PHENIX
data reduction
xia2
0.3.3.3
phasing
PHASER
data extraction
PDB_EXTRACT
3.15
CcP gateless cavity
1
N
N
2
N
N
3
N
N
4
N
N
biological assembly is a monomer
A
SER
15
A
SER
15
HELX_P
A
ASP
33
A
ASP
33
1
AA1
19
A
GLU
35
A
GLU
35
HELX_P
A
ILE
40
A
ILE
40
1
AA2
6
A
TYR
42
A
TYR
42
HELX_P
A
GLY
55
A
GLY
55
1
AA3
14
A
GLY
69
A
GLY
69
HELX_P
A
ARG
72
A
ARG
72
5
AA4
4
A
PHE
73
A
PHE
73
HELX_P
A
ASN
78
A
ASN
78
1
AA5
6
A
ASP
79
A
ASP
79
HELX_P
A
GLY
84
A
GLY
84
5
AA6
6
A
LEU
85
A
LEU
85
HELX_P
A
PHE
99
A
PHE
99
1
AA7
15
A
SER
103
A
SER
103
HELX_P
A
MET
119
A
MET
119
1
AA8
17
A
PRO
134
A
PRO
134
HELX_P
A
THR
138
A
THR
138
5
AA9
5
A
ASP
150
A
ASP
150
HELX_P
A
ARG
160
A
ARG
160
1
AB1
11
A
ASN
164
A
ASN
164
HELX_P
A
GLY
173
A
GLY
173
1
AB2
10
A
ALA
174
A
ALA
174
HELX_P
A
LEU
177
A
LEU
177
5
AB3
4
A
HIS
181
A
HIS
181
HELX_P
A
GLY
186
A
GLY
186
1
AB4
6
A
ASN
198
A
ASN
198
HELX_P
A
GLU
207
A
GLU
207
1
AB5
10
A
LEU
230
A
LEU
230
HELX_P
A
ASP
239
A
ASP
239
1
AB6
10
A
ASP
239
A
ASP
239
HELX_P
A
ASN
251
A
ASN
251
1
AB7
13
A
ASP
252
A
ASP
252
HELX_P
A
ASN
270
A
ASN
270
1
AB8
19
A
THR
286
A
THR
286
HELX_P
A
GLY
291
A
GLY
291
1
AB9
6
metalc
2.219
A
HIS
175
A
NE2
HIS
175
1_555
A
HEM
301
B
FE
HEM
1_555
metalc
2.193
A
HEM
301
B
FE
HEM
1_555
A
HOH
459
D
O
HOH
1_555
OXIDOREDUCTASE
Model system, flexibility, thermodynamics, cryptic site, transient protein sites, ligand binding, OXIDOREDUCTASE
CCPR_YEAST
UNP
1
71
P00431
LVHVASVEKGRSYEDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNA
GLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNM
NDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK
YLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL
71
361
4XV8
4
292
P00431
A
1
4
292
1
initiating methionine
MET
1
4XV8
A
P00431
UNP
1
1
expression tag
LYS
2
4XV8
A
P00431
UNP
2
1
expression tag
THR
3
4XV8
A
P00431
UNP
3
1
THR
conflict
ILE
53
4XV8
A
P00431
UNP
120
53
1
ASP
conflict
GLY
152
4XV8
A
P00431
UNP
219
152
1
PRO
engineered mutation
GLY
190
4XV8
A
P00431
UNP
257
190
1
TRP
engineered mutation
GLY
191
4XV8
A
P00431
UNP
258
191
1
GLY
deletion
4XV8
A
P00431
UNP
259
1
ALA
deletion
4XV8
A
P00431
UNP
260
2
3
parallel
anti-parallel
anti-parallel
A
HIS
6
A
HIS
6
A
VAL
7
A
VAL
7
A
ILE
272
A
ILE
272
A
THR
273
A
THR
273
A
LYS
210
A
LYS
210
A
LYS
213
A
LYS
213
A
GLU
219
A
GLU
219
A
ASP
222
A
ASP
222
A
MET
228
A
MET
228
A
MET
229
A
MET
229
binding site for residue HEM A 301
A
HEM
301
Software
23
binding site for residue BEN A 302
A
BEN
302
Software
8
A
PRO
44
A
PRO
44
23
1_555
A
ARG
48
A
ARG
48
23
1_555
A
TRP
51
A
TRP
51
23
1_555
A
PRO
145
A
PRO
145
23
1_555
A
ASP
146
A
ASP
146
23
1_555
A
ALA
147
A
ALA
147
23
1_555
A
LEU
171
A
LEU
171
23
1_555
A
ALA
174
A
ALA
174
23
1_555
A
HIS
175
A
HIS
175
23
1_555
A
LEU
177
A
LEU
177
23
1_555
A
GLY
178
A
GLY
178
23
1_555
A
LYS
179
A
LYS
179
23
1_555
A
THR
180
A
THR
180
23
1_555
A
HIS
181
A
HIS
181
23
1_555
A
ASN
184
A
ASN
184
23
1_555
A
SER
185
A
SER
185
23
1_555
A
LEU
230
A
LEU
230
23
1_555
A
THR
232
A
THR
232
23
1_555
A
BEN
302
C
BEN
23
1_555
A
HOH
459
D
HOH
23
1_555
A
HOH
471
D
HOH
23
1_555
A
HOH
500
D
HOH
23
1_555
A
HOH
504
D
HOH
23
1_555
A
HIS
175
A
HIS
175
8
1_555
A
LEU
177
A
LEU
177
8
1_555
A
MET
228
A
MET
228
8
1_555
A
MET
229
A
MET
229
8
1_555
A
ASP
233
A
ASP
233
8
1_555
A
HEM
301
B
HEM
8
1_555
A
HOH
475
D
HOH
8
1_555
A
HOH
485
D
HOH
8
1_555
19
P 21 21 21